BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031463
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39096|ERD15_ARATH Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana
GN=ERD15 PE=1 SV=1
Length = 163
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 107/168 (63%), Gaps = 14/168 (8%)
Query: 1 MALVSGR-STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLS-QHQDEDGFYD 58
MA+VSGR STLNP+APLFIPAA RQVEDFSPEWWQL+TTSTWY +YW+S Q Q DGFYD
Sbjct: 1 MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60
Query: 59 NG----GDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESEL-ENISSPLPA 113
NG G D VADLLP++FD D E+F +A EF F+ + S
Sbjct: 61 NGENENGGGHID---VADLLPESFDFDDMEDFFDTDAA--EFDQGFDGRMYYQAPSEFGF 115
Query: 114 NDADALMKNMRVSISPKSSMEAAKYVEKPAKYVNPK--CSPRRIQQPR 159
++K + SP+S +E AKY EKPAK+ N + +PR I QPR
Sbjct: 116 GKNGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163
>sp|Q94AR4|CID2_ARATH Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis
thaliana GN=CID2 PE=1 SV=1
Length = 143
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 42/164 (25%)
Query: 8 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDV 67
STLNPNAP+F P FR+VEDFSP+WW L+TTS W+ ++WLS + + + GGDD
Sbjct: 10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD---- 62
Query: 68 SNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALMKNMRVSI 127
FS +E +F+E + S S+ +++ + D + +K M ++I
Sbjct: 63 ------------------FSVMEEEFEEMIAS--SDGGSMADTVTEADVASYLK-MLLNI 101
Query: 128 S---------PKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 159
+ K S + KY +K KY+NP + RR I QPR
Sbjct: 102 AESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
>sp|Q8T113|P27K_BOMMO 27 kDa glycoprotein OS=Bombyx mori PE=1 SV=1
Length = 227
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 80 LDAGENFSSIE--AQFDEFVMSFESELENISSPLPANDADALMKNMR 124
+++ N S +E A+ DE LE S+P PAN A++L+K MR
Sbjct: 168 VESANNLSLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESLIKFMR 214
>sp|O32254|YVBT_BACSU Uncharacterized protein YvbT OS=Bacillus subtilis (strain 168)
GN=yvbT PE=4 SV=1
Length = 336
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 42 YHNYWLSQHQDEDGF----------YDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEA 91
YH YWL++H + +G + GG + V + +LP+ L E F ++E
Sbjct: 44 YHRYWLAEHHNIEGVASSATAVLIGHIAGGTKKIRVGSGGIMLPNHSSLVIAEQFGTLET 103
Query: 92 QF 93
+
Sbjct: 104 LY 105
>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus
GN=Ptprd PE=1 SV=3
Length = 1912
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 61 GDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALM 120
G+ E N+ + ++ GEN + +E +F S IS+ LP N +
Sbjct: 1616 GNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRL 1675
Query: 121 KNM------RVSISPKSSMEAAKYV 139
N+ RV + P +E + Y+
Sbjct: 1676 VNIMPYESTRVCLQPIRGVEGSDYI 1700
>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens
GN=PTPRD PE=1 SV=2
Length = 1912
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 61 GDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALM 120
G+ E N+ + ++ GEN + +E +F S IS+ LP N +
Sbjct: 1616 GNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRL 1675
Query: 121 KNM------RVSISPKSSMEAAKYV 139
N+ RV + P +E + Y+
Sbjct: 1676 VNIMPYESTRVCLQPIRGVEGSDYI 1700
>sp|Q55288|MXIJ_SHISO Lipoprotein MxiJ OS=Shigella sonnei GN=mxiJ PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 50 HQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISS 109
H YD+ + E VSN+ L +TF EN S I +E+V + ++ I S
Sbjct: 146 HISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKS 205
Query: 110 PLPANDADALMKNMRVSI 127
N+ L M V +
Sbjct: 206 EFLTNEVIYLFLGMAVLV 223
>sp|Q25513|HGLY_MANSE 27 kDa hemolymph glycoprotein OS=Manduca sexta PE=1 SV=1
Length = 233
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 56 FYDNGGDDEF-----DVSNVADLLPDTF-DLDAGENFSSIE--AQFDEFVMSFESELENI 107
F +GG + F D+ A+ + ++F ++A + S + +FD+ + LE
Sbjct: 145 FIAHGGSECFKNSTEDLKKCAEEMKNSFPSVEAAKAMSLPDKCGKFDDLTTCMVTSLEKC 204
Query: 108 SSPLPANDADALMKNMR 124
+P PAN A++L+K +R
Sbjct: 205 ENPTPANMAESLLKFIR 221
>sp|Q06081|MXIJ_SHIFL Lipoprotein MxiJ OS=Shigella flexneri GN=mxiJ PE=3 SV=1
Length = 241
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 50 HQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISS 109
H YD+ + E VSN+ L +TF EN S I +E+V + ++ + S
Sbjct: 146 HISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEVKS 205
Query: 110 PLPANDADALMKNMRVSI 127
N+ L M V +
Sbjct: 206 EFLTNEVIYLFLGMAVLV 223
>sp|Q49409|Y277_MYCGE Uncharacterized protein MG277 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG277 PE=4 SV=1
Length = 970
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 38 TSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDT-----FDLDAGENFSSIEAQ 92
T+TW + YW + + F N +D F+ DL+ + F + +G NF I+
Sbjct: 841 TTTWTYFYWFKRSLKDKVFIKNLFNDNFNSQWKIDLIESSSLVFIFIIYSGFNFGGIDGN 900
Query: 93 FD 94
F+
Sbjct: 901 FN 902
>sp|A7HYC4|SYD_PARL1 Aspartate--tRNA ligase OS=Parvibaculum lavamentivorans (strain DS-1
/ DSM 13023 / NCIMB 13966) GN=aspS PE=3 SV=1
Length = 607
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 58 DNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESEL-----ENISSPLP 112
D+GG D+ + L FD D E F+ E E+V++ E ++ E I++ LP
Sbjct: 32 DHGGLLFIDLRDNYGLTQLVFDPDRAEAFALAEKLRAEYVVAIEGKVVARSAETINANLP 91
Query: 113 ANDADALMKNMRV 125
D + + +M V
Sbjct: 92 TGDIEIAVSSMEV 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,453,211
Number of Sequences: 539616
Number of extensions: 2694183
Number of successful extensions: 6884
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6872
Number of HSP's gapped (non-prelim): 26
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)