Query 031463
Match_columns 159
No_of_seqs 62 out of 64
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 23:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031463.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031463hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkza_ f.3.1.1 (A:) Light-har 51.8 2.4 0.00017 26.8 1.0 14 34-47 33-46 (53)
2 d1ijda_ f.3.1.1 (A:) Light-har 51.7 2.4 0.00018 26.1 1.1 13 34-46 33-45 (46)
3 d2ftra1 d.58.4.15 (A:4-106) Hy 19.1 16 0.0011 23.6 0.8 13 40-52 18-30 (103)
4 d3ci0k2 a.60.16.1 (K:94-203) P 16.5 62 0.0045 21.1 3.5 31 7-37 70-100 (110)
5 d1l3wa5 b.1.6.1 (A:434-540) C- 16.3 20 0.0015 22.3 0.8 17 11-27 1-17 (107)
6 d1o7za_ d.9.1.1 (A:) IP-10/CXC 7.7 36 0.0026 21.0 -0.3 9 8-16 44-52 (61)
7 d1wfra_ d.106.1.1 (A:) Hypothe 7.4 69 0.005 21.9 1.2 21 24-44 7-31 (143)
8 d2h8pc1 f.14.1.1 (C:22-78) Pot 7.1 64 0.0046 19.5 0.7 9 32-40 46-54 (57)
9 d1j0ha3 c.1.8.1 (A:124-505) Ne 6.0 53 0.0038 24.0 -0.1 7 40-46 130-136 (382)
10 d3b7sa3 d.92.1.13 (A:209-460) 6.0 37 0.0027 24.1 -1.1 24 27-50 88-111 (252)
No 1
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=51.84 E-value=2.4 Score=26.85 Aligned_cols=14 Identities=29% Similarity=1.163 Sum_probs=11.7
Q ss_pred HHhhcchhHHHHHH
Q 031463 34 QLITTSTWYHNYWL 47 (159)
Q Consensus 34 ~LV~ts~wFRD~Wl 47 (159)
.++++++||-+||-
T Consensus 33 avl~~TtW~~~~~~ 46 (53)
T d1nkza_ 33 AILSHTTWFPAYWQ 46 (53)
T ss_dssp HHHHHCSHHHHHHH
T ss_pred HHHhcChhHHHHhc
Confidence 46789999999993
No 2
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=51.74 E-value=2.4 Score=26.10 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=11.2
Q ss_pred HHhhcchhHHHHH
Q 031463 34 QLITTSTWYHNYW 46 (159)
Q Consensus 34 ~LV~ts~wFRD~W 46 (159)
.++++++||-+||
T Consensus 33 avl~nTtW~~~~~ 45 (46)
T d1ijda_ 33 AVLTHTTWYAAFL 45 (46)
T ss_dssp HHHHSCSHHHHHT
T ss_pred HHHhcCchHHHhh
Confidence 4678999999998
No 3
>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}
Probab=19.09 E-value=16 Score=23.58 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=10.4
Q ss_pred hhHHHHHHhhccC
Q 031463 40 TWYHNYWLSQHQD 52 (159)
Q Consensus 40 ~wFRD~Wl~q~~~ 52 (159)
.-|++||+..|-.
T Consensus 18 e~F~~yy~~~H~p 30 (103)
T d2ftra1 18 QAFDEHYFNTHAP 30 (103)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHhhHH
Confidence 3599999998854
No 4
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=16.51 E-value=62 Score=21.10 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCCCCCCCccccchhhhccCCChHHHHHhh
Q 031463 7 RSTLNPNAPLFIPAAFRQVEDFSPEWWQLIT 37 (159)
Q Consensus 7 ~StLNPnAplFIPaa~rqVEDFSpeWW~LV~ 37 (159)
.+-+.+|.|+--..-+|.|..|+|+.|+.+.
T Consensus 70 ~py~~~n~~l~s~sEL~~v~G~~~~~~~~L~ 100 (110)
T d3ci0k2 70 VPFYAANQPLADISEMRVVQGMDAGLYQKLK 100 (110)
T ss_dssp SCBCCCCSCCSSGGGGGGSTTCCHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHhhccCCCHHHHHHHh
Confidence 4557789999999999999999999999875
No 5
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=16.33 E-value=20 Score=22.27 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.4
Q ss_pred CCCCCccccchhhhccC
Q 031463 11 NPNAPLFIPAAFRQVED 27 (159)
Q Consensus 11 NPnAplFIPaa~rqVED 27 (159)
|=|||.|.|..|...|.
T Consensus 1 NDNaP~f~~~~~~v~e~ 17 (107)
T d1l3wa5 1 NDNGPVPSPRVFTMCDQ 17 (107)
T ss_dssp CCSCCCBSCCCEEECSS
T ss_pred CCCCCccCCCEEEEEec
Confidence 66999999988876554
No 6
>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.71 E-value=36 Score=21.01 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=7.0
Q ss_pred CCCCCCCCc
Q 031463 8 STLNPNAPL 16 (159)
Q Consensus 8 StLNPnApl 16 (159)
==|||+||.
T Consensus 44 vCLdP~a~~ 52 (61)
T d1o7za_ 44 RCLNPESKA 52 (61)
T ss_dssp EEECSSSHH
T ss_pred EecCCCCHH
Confidence 369999984
No 7
>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401) {Thermus thermophilus [TaxId: 274]}
Probab=7.38 E-value=69 Score=21.87 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.6
Q ss_pred hccCCChHHHH----HhhcchhHHH
Q 031463 24 QVEDFSPEWWQ----LITTSTWYHN 44 (159)
Q Consensus 24 qVEDFSpeWW~----LV~ts~wFRD 44 (159)
.|+=||+||.+ +++.++-|++
T Consensus 7 ~~~~~S~EW~~~~~~~~N~~~e~~~ 31 (143)
T d1wfra_ 7 GMELFTEAWAQAYCRKLNESEAYRK 31 (143)
T ss_dssp CSCCSSHHHHHHHHHHHHHCHHHHH
T ss_pred hhhcCCHHHHHHHHHHHcCCHHHHH
Confidence 36679999997 4556666654
No 8
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.07 E-value=64 Score=19.53 Aligned_cols=9 Identities=44% Similarity=1.151 Sum_probs=7.5
Q ss_pred HHHHhhcch
Q 031463 32 WWQLITTST 40 (159)
Q Consensus 32 WW~LV~ts~ 40 (159)
||..|+-++
T Consensus 46 WWaivT~TT 54 (57)
T d2h8pc1 46 WWACETATT 54 (57)
T ss_dssp HHHHHHHTT
T ss_pred hhheeeeec
Confidence 999998664
No 9
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.00 E-value=53 Score=23.96 Aligned_cols=7 Identities=14% Similarity=0.819 Sum_probs=3.1
Q ss_pred hhHHHHH
Q 031463 40 TWYHNYW 46 (159)
Q Consensus 40 ~wFRD~W 46 (159)
+||..+|
T Consensus 130 ~~~~~~~ 136 (382)
T d1j0ha3 130 APFQDVW 136 (382)
T ss_dssp HHHHHHH
T ss_pred ccchhhh
Confidence 4444443
No 10
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.00 E-value=37 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.597 Sum_probs=19.5
Q ss_pred CCChHHHHHhhcchhHHHHHHhhc
Q 031463 27 DFSPEWWQLITTSTWYHNYWLSQH 50 (159)
Q Consensus 27 DFSpeWW~LV~ts~wFRD~Wl~q~ 50 (159)
-..=+||--.-|..|..|.||.|-
T Consensus 88 E~aHqWfG~~Vt~~~w~~~WL~EG 111 (252)
T d3b7sa3 88 QISHSWTGNLVTNKTWDHFWLNEG 111 (252)
T ss_dssp HHHTTTBTTTEEESSGGGHHHHHH
T ss_pred HHHHHHHhhhceeccccchHhhcc
Confidence 345689988888889999999874
Done!