BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031465
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF
FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACS
FSLQRTILLARISPSPWMKSRNQQQICDVTDYNRQVLLV

High Scoring Gene Products

Symbol, full name Information P value
AT2G04700 protein from Arabidopsis thaliana 1.8e-39
ftrC
Ferredoxin-thioredoxin reductase, catalytic chain
protein from Synechocystis sp. PCC 6803 substr. Kazusa 2.8e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031465
        (159 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2049228 - symbol:AT2G04700 species:3702 "Arabi...   421  1.8e-39   1
UNIPROTKB|Q55389 - symbol:ftrC "Ferredoxin-thioredoxin re...   306  2.8e-27   1


>TAIR|locus:2049228 [details] [associations]
            symbol:AT2G04700 species:3702 "Arabidopsis thaliana"
            [GO:0008937 "ferredoxin-NAD(P) reductase activity" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0030385
            "ferredoxin:thioredoxin reductase activity" evidence=ISS]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0000023 "maltose metabolic process"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0043085 "positive regulation of catalytic
            activity" evidence=RCA] InterPro:IPR004209 InterPro:IPR024707
            Pfam:PF02943 PIRSF:PIRSF000260 GO:GO:0009570 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0009941 GO:GO:0051539
            EMBL:AC006955 EMBL:AY063795 EMBL:AY117167 EMBL:AY088058
            IPI:IPI00538107 PIR:D84460 RefSeq:NP_178547.1 UniGene:At.27480
            HSSP:Q55389 ProteinModelPortal:Q9SJ89 SMR:Q9SJ89 STRING:Q9SJ89
            PaxDb:Q9SJ89 PRIDE:Q9SJ89 EnsemblPlants:AT2G04700.1 GeneID:815013
            KEGG:ath:AT2G04700 TAIR:At2g04700 eggNOG:COG4802
            HOGENOM:HOG000265597 InParanoid:Q9SJ89 OMA:QYAKRTG PhylomeDB:Q9SJ89
            ProtClustDB:CLSN2683009 Genevestigator:Q9SJ89 GO:GO:0008937
            Gene3D:3.90.460.10 SUPFAM:SSF57662 Uniprot:Q9SJ89
        Length = 146

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/125 (68%), Positives = 90/125 (72%)

Query:     1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
             M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct:     1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query:    59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
             T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    
Sbjct:    57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query:   119 CSFSL 123
             C   L
Sbjct:   117 CMLFL 121


>UNIPROTKB|Q55389 [details] [associations]
            symbol:ftrC "Ferredoxin-thioredoxin reductase, catalytic
            chain" species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004209
            InterPro:IPR024707 Pfam:PF02943 PIRSF:PIRSF000260 GO:GO:0046872
            GO:GO:0051539 EMBL:BA000022 GenomeReviews:BA000022_GR PDB:2PVG
            PDB:2PVO PDBsum:2PVG PDBsum:2PVO eggNOG:COG4802
            HOGENOM:HOG000265597 OMA:QYAKRTG GO:GO:0008937 Gene3D:3.90.460.10
            SUPFAM:SSF57662 PDB:2PU9 PDBsum:2PU9 PDB:2PUK PDBsum:2PUK KO:K00535
            PIR:S75744 RefSeq:NP_442409.1 RefSeq:YP_005652469.1 PDB:1DJ7
            PDB:2PUO PDB:2PVD PDBsum:1DJ7 PDBsum:2PUO PDBsum:2PVD
            ProteinModelPortal:Q55389 SMR:Q55389 IntAct:Q55389 STRING:Q55389
            GeneID:12253701 GeneID:952408 KEGG:syn:sll0554 KEGG:syy:SYNGTS_2516
            PATRIC:23842512 ProtClustDB:CLSK893554 BioCyc:MetaCyc:MONOMER-14463
            EvolutionaryTrace:Q55389 Uniprot:Q55389
        Length = 118

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query:    39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
             + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct:     8 NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 67

Query:    99 AQQGFWNCPCVPMRERNATACSFSL 123
              +  FWNCPCVPMRER    C   L
Sbjct:    68 VKNTFWNCPCVPMRERKECHCMLFL 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.133   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       159   0.00091  106 3  11 22  0.45    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.40u 0.14s 15.54t   Elapsed:  00:00:01
  Total cpu time:  15.40u 0.14s 15.54t   Elapsed:  00:00:01
  Start:  Sat May 11 03:08:12 2013   End:  Sat May 11 03:08:13 2013

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