BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031465
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Glycine max GN=FTRC PE=2 SV=1
Length = 144
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 99/144 (68%), Gaps = 13/144 (9%)
Query: 1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
MT Q+S V + + TP R R +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56
Query: 61 FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACS 120
FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE QGFWNCPCVPMRER C
Sbjct: 57 FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCM 116
Query: 121 FSL---------QRTILLARISPS 135
L ++TI L I S
Sbjct: 117 LFLTPDNDFAGNEQTITLDEIKES 140
>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1
Length = 146
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 90/125 (72%), Gaps = 6/125 (4%)
Query: 1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
M LQ+ C G S TPR R IRA+ EPSEKSVEIMRKFSEQYARRS
Sbjct: 1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56
Query: 59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE QGFWNCPCVPMRER
Sbjct: 57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116
Query: 119 CSFSL 123
C L
Sbjct: 117 CMLFL 121
>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea PE=2 SV=1
Length = 148
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/97 (78%), Positives = 83/97 (85%)
Query: 27 RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
RP I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86
Query: 87 CPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
CPCR+YDDKAAEA QGFWNCPCVPMRER C L
Sbjct: 87 CPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFL 123
>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea GN=FTRC PE=1 SV=2
Length = 144
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 24 ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
A PR ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19 ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78
Query: 83 GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
GAPLCPCRHYDDK AEA+QGFWNCPCVPMRER C L
Sbjct: 79 GAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFL 119
>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Zea mays GN=FTRC PE=2 SV=1
Length = 152
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/104 (70%), Positives = 82/104 (78%), Gaps = 5/104 (4%)
Query: 24 ARPRPVTQIRAQVEPSE----KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
RPR +RAQ ++ KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25 GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83
Query: 80 DSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
D+LGAPLCPCRHYDDKAAE QGFWNCPCVPMRER C L
Sbjct: 84 DTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFL 127
>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2
SV=1
Length = 146
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 72/83 (86%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPCRHYDDKAAE
Sbjct: 39 KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPCRHYDDKAAEVA 98
Query: 101 QGFWNCPCVPMRERNATACSFSL 123
QGFWNCPCVPMRER C L
Sbjct: 99 QGFWNCPCVPMRERKECHCMLFL 121
>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
purpurea GN=ftrB PE=3 SV=1
Length = 118
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 70/107 (65%), Gaps = 13/107 (12%)
Query: 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD GAPLCPCRHY+DK AE
Sbjct: 12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISA 71
Query: 102 GFWNCPCVPMRERNATACSFSL-------------QRTILLARISPS 135
+WNCPCVPMRER C L +T LL +I+ S
Sbjct: 72 TYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKTTLLEKIASS 118
>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
yezoensis GN=ftrB PE=3 SV=2
Length = 116
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 64/83 (77%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
+++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD GAPLCPCRHY+DK AE
Sbjct: 11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEIS 70
Query: 101 QGFWNCPCVPMRERNATACSFSL 123
+WNCPCVPMRER C L
Sbjct: 71 ATYWNCPCVPMRERRECHCMLFL 93
>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia
theta GN=ftrB PE=3 SV=1
Length = 102
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 63/90 (70%)
Query: 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDK 95
+E S M+KF+E YA+R++TFFC D S+T +V++GLA HKD GAPLCPCRHYDDK
Sbjct: 2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDK 61
Query: 96 AAEAQQGFWNCPCVPMRERNATACSFSLQR 125
+ E +WNCPCVPMRER C L +
Sbjct: 62 SEEVASTYWNCPCVPMRERKECHCMLFLTK 91
>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium
caldarium GN=ftrB PE=3 SV=1
Length = 111
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 63/84 (75%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD GAPLCPCRHY++K E
Sbjct: 6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVL 65
Query: 101 QGFWNCPCVPMRERNATACSFSLQ 124
+WNCPCVPMRER C LQ
Sbjct: 66 AAYWNCPCVPMRERKECHCMLFLQ 89
>sp|P46224|CH60_PYRSA 60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL
PE=3 SV=1
Length = 585
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 46 MRKFSEQYARRSD-TFFCVDKSVTSVVIKGLADHKDSLGA 84
MR+FSE Y ++ TFFC + S+T+VVI+GL HK+ GA
Sbjct: 1 MRRFSETYGQKKQITFFCSNLSITAVVIEGLLKHKEEYGA 40
>sp|Q608Y9|NUON_METCA NADH-quinone oxidoreductase subunit N OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=nuoN PE=3
SV=1
Length = 493
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 18 TPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCV 63
TP P PVT A V + ++R F+ +A RS+TF CV
Sbjct: 224 TPDVYQGAPTPVTAFLATVSKASVFALLLRFFTAAHAERSETFLCV 269
>sp|Q72DH6|SYY_DESVH Tyrosine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=tyrS PE=3
SV=1
Length = 398
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 79 KDSLGAPLCPCRHYDDKAAEAQQGF 103
K+SL L H +DKAAEAQQGF
Sbjct: 289 KESLAYELTTRYHGEDKAAEAQQGF 313
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana
GN=At3g44820 PE=2 SV=2
Length = 651
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 136 PWMKSRNQQQICDVTDYNR 154
PW+ R+++Q+C++ DY R
Sbjct: 461 PWLSDRDKEQLCNIMDYQR 479
>sp|P47715|RPOB_MYCGA DNA-directed RNA polymerase subunit beta OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=rpoB PE=3 SV=2
Length = 1390
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 49 FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLG 83
F ++ A + DT F ++KS T +IK L +H S+G
Sbjct: 1120 FDKKLADQLDTVFGLEKSKTQSLIKNLVEHMKSIG 1154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,135,047
Number of Sequences: 539616
Number of extensions: 1855076
Number of successful extensions: 5259
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5243
Number of HSP's gapped (non-prelim): 17
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)