Query 031465
Match_columns 159
No_of_seqs 108 out of 182
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 23:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj7_A Ferredoxin thioredoxin 100.0 4.9E-46 1.7E-50 284.5 5.3 101 34-134 2-102 (117)
2 1n0z_A ZNF265; zinc finger, RN 62.1 2.6 8.8E-05 26.6 0.9 20 99-118 10-34 (45)
3 2k1p_A Zinc finger RAN-binding 55.4 4.4 0.00015 23.8 1.1 18 100-117 3-23 (33)
4 1u2m_A Histone-like protein HL 53.1 14 0.00049 26.7 3.8 37 39-75 95-142 (143)
5 2kvo_A Photosystem II reaction 46.4 10 0.00034 28.9 2.1 45 20-64 64-111 (120)
6 2cly_C ATP synthase coupling f 37.6 47 0.0016 23.4 4.3 43 42-85 12-54 (77)
7 2k9i_A Plasmid PRN1, complete 33.6 36 0.0012 20.3 2.8 32 44-77 18-49 (55)
8 2qv5_A AGR_C_5032P, uncharacte 29.4 1.4E+02 0.0047 24.6 6.6 47 33-79 186-235 (261)
9 2pyq_A Uncharacterized protein 29.1 80 0.0027 23.7 4.6 33 42-76 5-37 (114)
10 2cpg_A REPA protein, transcrip 29.0 56 0.0019 18.8 3.1 30 44-76 11-40 (45)
11 1cyi_A Cytochrome C6, cytochro 29.0 50 0.0017 20.8 3.1 25 37-61 66-90 (90)
12 1qpz_A PURA, protein (purine n 27.2 71 0.0024 24.9 4.3 42 45-86 30-91 (340)
13 3kjx_A Transcriptional regulat 27.1 60 0.0021 25.3 3.9 42 45-86 40-101 (344)
14 1gh9_A 8.3 kDa protein (gene M 24.6 20 0.00068 24.6 0.5 22 86-110 6-28 (71)
15 2lk0_A RNA-binding protein 5; 23.6 22 0.00077 20.5 0.5 12 100-111 2-14 (32)
16 3dbi_A Sugar-binding transcrip 23.3 52 0.0018 25.6 2.8 47 44-90 32-100 (338)
17 1l1o_C Replication protein A 7 22.8 21 0.00071 27.4 0.4 57 84-143 43-118 (181)
18 3vu7_H DNA repair protein REV1 20.7 1.7E+02 0.006 21.6 5.1 40 36-81 53-92 (124)
19 3jvd_A Transcriptional regulat 20.6 60 0.0021 25.4 2.7 46 44-89 35-100 (333)
20 1jx6_A LUXP protein; protein-l 20.5 95 0.0032 24.0 3.8 44 43-86 15-77 (342)
21 2hsg_A Glucose-resistance amyl 20.1 1.2E+02 0.004 23.4 4.2 42 45-86 32-93 (332)
22 1th8_A Anti-sigma F factor; SP 20.0 1.4E+02 0.0046 20.3 4.1 45 40-85 13-57 (145)
No 1
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=100.00 E-value=4.9e-46 Score=284.46 Aligned_cols=101 Identities=52% Similarity=1.006 Sum_probs=93.1
Q ss_pred ccCCcCHHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCccccc
Q 031465 34 AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRE 113 (159)
Q Consensus 34 ~~~~~see~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~~CPCRl~~DkE~ev~D~diICPCvy~~E 113 (159)
.+++++++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||++.|+|++++.++|||||+||++
T Consensus 2 ~~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re 81 (117)
T 1dj7_A 2 SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRE 81 (117)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhh
Confidence 46789999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred CceeeEeeeeccchhhccCCC
Q 031465 114 RNATACSFSLQRTILLARISP 134 (159)
Q Consensus 114 ~G~CHC~LFvs~e~~~a~~~~ 134 (159)
+|+|||||||++|+.|+|...
T Consensus 82 ~G~ChC~Lfvt~e~~~~g~~~ 102 (117)
T 1dj7_A 82 RKECHCMLFLTPDNDFAGDAQ 102 (117)
T ss_dssp HCCCTTSSSBCTTSTTBCSCS
T ss_pred cCceeEeeeecccccccCccc
Confidence 999999999999999999653
No 2
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=62.14 E-value=2.6 Score=26.58 Aligned_cols=20 Identities=30% Similarity=0.800 Sum_probs=15.0
Q ss_pred hhCCceeec---Cccc--ccCceee
Q 031465 99 AQQGFWNCP---CVPM--RERNATA 118 (159)
Q Consensus 99 v~D~diICP---Cvy~--~E~G~CH 118 (159)
.+..||+|| |-.+ ..+..|+
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~ 34 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCD 34 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCS
T ss_pred CCCCCcCCCCCCCCCEEcccccccc
Confidence 458999999 9885 5566664
No 3
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=55.42 E-value=4.4 Score=23.82 Aligned_cols=18 Identities=22% Similarity=0.700 Sum_probs=12.1
Q ss_pred hCCceeec-Cccc--ccCcee
Q 031465 100 QQGFWNCP-CVPM--RERNAT 117 (159)
Q Consensus 100 ~D~diICP-Cvy~--~E~G~C 117 (159)
+..||+|| |-.+ ..+-.|
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C 23 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSEC 23 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBC
T ss_pred CCCCcccCCCCCccccccccc
Confidence 47899999 7764 444444
No 4
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=53.07 E-value=14 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHhhhcCcE----------eccCh-hhHHHHHHHH
Q 031465 39 SEKSVEIMRKFSEQYARRSDTF----------FCVDK-SVTSVVIKGL 75 (159)
Q Consensus 39 see~le~~~~f~ekyAek~Gy~----------lNPD~-evt~~Vi~GL 75 (159)
...-.+++.+.++.+|+..||- .+|.- ++|+.|++.|
T Consensus 95 ~~~i~~~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 95 RGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 3455667888999999999984 35676 8899988765
No 5
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=46.35 E-value=10 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=31.0
Q ss_pred ccccccCCceeeee--ccCC-cCHHHHHHHHHHHHHHhhhcCcEeccC
Q 031465 20 RPIIARPRPVTQIR--AQVE-PSEKSVEIMRKFSEQYARRSDTFFCVD 64 (159)
Q Consensus 20 ~~~~~~~~~~~~~~--~~~~-~see~le~~~~f~ekyAek~Gy~lNPD 64 (159)
|||=+++-++-... +.-. .++++-+.+.+|+++||+.+|.-|.-.
T Consensus 64 ~~v~aKFvnGkp~~iEa~y~m~s~~~WdRFMRFMeRYA~~Ngl~f~k~ 111 (120)
T 2kvo_A 64 REVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENGLGFSKS 111 (120)
T ss_dssp CCEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHHHHCCSSSCST
T ss_pred EecceEEECCceeEEEEEEEECCHHHHHHHHHHHHHHHHhcCCccccC
Confidence 44545544443322 2222 488999999999999999999877654
No 6
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=37.58 E-value=47 Score=23.43 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCC
Q 031465 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (159)
Q Consensus 42 ~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~ 85 (159)
=++++|++..+-+. .|=...+.+++-..+-+-|.+-...||..
T Consensus 12 FldKIREYk~Ks~~-~G~lVD~~Pe~~kel~~el~kL~~~YGgg 54 (77)
T 2cly_C 12 FVDKIREYRTKRQT-SGGPVDAGPEYQQDLDRELFKLKQMYGKA 54 (77)
T ss_dssp HHHHHHHHHHHHTC-CSSSSSCCTHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhccc-CCCCCCCCHHHHHHHHHHHHHHHHHHCcc
Confidence 47888888776663 47899999999999999999999999976
No 7
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=33.59 E-value=36 Score=20.32 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHH
Q 031465 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD 77 (159)
Q Consensus 44 e~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~ 77 (159)
+++++.++.+|++.|. +..+-+-.+|.+-|.+
T Consensus 18 ~el~~~l~~~a~~~g~--s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNL--TLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 3455668889999996 4444444444444433
No 8
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=29.45 E-value=1.4e+02 Score=24.58 Aligned_cols=47 Identities=17% Similarity=0.014 Sum_probs=38.5
Q ss_pred eccCCcCHHHHHHHHHHHHHHhhhcCcEe---ccChhhHHHHHHHHHHhH
Q 031465 33 RAQVEPSEKSVEIMRKFSEQYARRSDTFF---CVDKSVTSVVIKGLADHK 79 (159)
Q Consensus 33 ~~~~~~see~le~~~~f~ekyAek~Gy~l---NPD~evt~~Vi~GLa~NK 79 (159)
.-+.+.+++.+.+..+.+.+.|++.|+.+ .|-++-++.|.+.|..-+
T Consensus 186 FLD~~~~~~~I~~qL~~a~~~Ar~~G~AIaIGhp~p~Ti~aL~~~~~~l~ 235 (261)
T 2qv5_A 186 LLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAG 235 (261)
T ss_dssp ETTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEECCHHHHHHHHHHHHHGG
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHhhhhh
Confidence 34457889999999999999999999986 688887887777776654
No 9
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=29.10 E-value=80 Score=23.73 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHH
Q 031465 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLA 76 (159)
Q Consensus 42 ~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa 76 (159)
.-|.|-++++.+-++-| .+||.+++..|..||-
T Consensus 5 ~de~ia~Y~~d~k~k~~--~~~D~~ll~kv~~~lG 37 (114)
T 2pyq_A 5 RDDLIAQYADDLRNKCG--MEPDMALLEKVTKGCG 37 (114)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcC
Confidence 34556666666544544 5999999999999983
No 10
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=29.02 E-value=56 Score=18.75 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHH
Q 031465 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLA 76 (159)
Q Consensus 44 e~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa 76 (159)
+++.+.++++|++.|. + -.+++...++..+
T Consensus 11 ~~l~~~Ld~~a~~~g~--s-rS~~ir~ai~~~l 40 (45)
T 2cpg_A 11 ESVLENLEKMAREMGL--S-KSAMISVALENYK 40 (45)
T ss_dssp HHHHHHHHHHHHHHTC--C-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc--C-HHHHHHHHHHHHH
Confidence 3456678889999995 3 3444444444333
No 11
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=28.96 E-value=50 Score=20.83 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.3
Q ss_pred CcCHHHHHHHHHHHHHHhhhcCcEe
Q 031465 37 EPSEKSVEIMRKFSEQYARRSDTFF 61 (159)
Q Consensus 37 ~~see~le~~~~f~ekyAek~Gy~l 61 (159)
..++++++.+-.|+.....+.||.|
T Consensus 66 ~ls~~ei~~l~~yl~~~~~~~~W~~ 90 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQATDAAWKY 90 (90)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCC-
T ss_pred cCCHHHHHHHHHHHHhcccccCCCC
Confidence 4799999999999999998888864
No 12
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.15 E-value=71 Score=24.88 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhcCcEec------------------c--ChhhHHHHHHHHHHhHhhhCCCC
Q 031465 45 IMRKFSEQYARRSDTFFC------------------V--DKSVTSVVIKGLADHKDSLGAPL 86 (159)
Q Consensus 45 ~~~~f~ekyAek~Gy~lN------------------P--D~evt~~Vi~GLa~NK~rYG~~~ 86 (159)
++++.+.+.|++.||.-| | +..+...+++|+.+--.++|+..
T Consensus 30 ~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 91 (340)
T 1qpz_A 30 ETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTL 91 (340)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 345556666666676533 2 34567789999999888899864
No 13
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=27.13 E-value=60 Score=25.34 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 031465 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (159)
Q Consensus 45 ~~~~f~ekyAek~Gy~lNP--------------------D~evt~~Vi~GLa~NK~rYG~~~ 86 (159)
++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..
T Consensus 40 ~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 101 (344)
T 3kjx_A 40 ATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQP 101 (344)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 4455577788888887664 23467889999999999999875
No 14
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=24.64 E-value=20 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=16.7
Q ss_pred CCCCcccc-chhhhhhCCceeecCcc
Q 031465 86 LCPCRHYD-DKAAEAQQGFWNCPCVP 110 (159)
Q Consensus 86 ~CPCRl~~-DkE~ev~D~diICPCvy 110 (159)
-|||...+ -++- .+.-.|||-.
T Consensus 6 ~C~C~~~~~~~~~---~kT~~C~CG~ 28 (71)
T 1gh9_A 6 RCDCGRALYSREG---AKTRKCVCGR 28 (71)
T ss_dssp EETTSCCEEEETT---CSEEEETTTE
T ss_pred ECCCCCEEEEcCC---CcEEECCCCC
Confidence 38999887 5554 6777899987
No 15
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=23.62 E-value=22 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=8.7
Q ss_pred hCCceeec-Cccc
Q 031465 100 QQGFWNCP-CVPM 111 (159)
Q Consensus 100 ~D~diICP-Cvy~ 111 (159)
|.+||+|| |..+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 47899996 6553
No 16
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.34 E-value=52 Score=25.59 Aligned_cols=47 Identities=13% Similarity=-0.076 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhcCcEecc----------------------ChhhHHHHHHHHHHhHhhhCCCCCCCc
Q 031465 44 EIMRKFSEQYARRSDTFFCV----------------------DKSVTSVVIKGLADHKDSLGAPLCPCR 90 (159)
Q Consensus 44 e~~~~f~ekyAek~Gy~lNP----------------------D~evt~~Vi~GLa~NK~rYG~~~CPCR 90 (159)
+++++.+.+.|++.||.-|+ +..+...++.|+.+--.++|+..=-+.
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD 100 (338)
T ss_dssp ----------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34555567777777775443 345778999999999999998754433
No 17
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=22.80 E-value=21 Score=27.39 Aligned_cols=57 Identities=11% Similarity=0.235 Sum_probs=42.0
Q ss_pred CCCCC---CccccchhhhhhCCceeec-Ccc---------------cccCceeeEeeeeccchhhccCCCCcccccccc
Q 031465 84 APLCP---CRHYDDKAAEAQQGFWNCP-CVP---------------MRERNATACSFSLQRTILLARISPSPWMKSRNQ 143 (159)
Q Consensus 84 ~~~CP---CRl~~DkE~ev~D~diICP-Cvy---------------~~E~G~CHC~LFvs~e~~~a~~~~~~~~~~~~~ 143 (159)
|+.|| |+---..+. ++.|.|+ |.. +..-|.-+|.+|=...-..-|.|+...++-+.+
T Consensus 43 Y~aC~~~~CnKKv~~~~---~g~~~CekC~~~~~~~~~ry~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~ 118 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQ---NGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK 118 (181)
T ss_dssp EEBCCSTTCCCBCEEET---TTEEEETTTTEEESSCCEEEEEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTS
T ss_pred ECCCCchhcCCccccCC---CCeEECCCCCCcCCCceEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhh
Confidence 89999 987543333 6789999 654 266888999999877766778888777765543
No 18
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=20.71 E-value=1.7e+02 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=25.6
Q ss_pred CCcCHHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhh
Q 031465 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDS 81 (159)
Q Consensus 36 ~~~see~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~r 81 (159)
..|.+++++.+.+|+.+.++. -|-+-+..|++-|-+.-++
T Consensus 53 ~~P~~~DV~~l~~yL~~lVee------k~Lek~~~vlk~l~rlv~~ 92 (124)
T 3vu7_H 53 SDPMEEDILQVVKYCTDLIEE------KDLEKLDLVIKYMKRLMQQ 92 (124)
T ss_dssp CSCCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHhc
Confidence 346777777777777777753 3566666666666555433
No 19
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.58 E-value=60 Score=25.45 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCCCCC
Q 031465 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (159)
Q Consensus 44 e~~~~f~ekyAek~Gy~lNP--------------------D~evt~~Vi~GLa~NK~rYG~~~CPC 89 (159)
+++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..=-+
T Consensus 35 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 100 (333)
T 3jvd_A 35 PQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA 100 (333)
T ss_dssp -----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34455566677777776543 33578889999999999999865433
No 20
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=20.52 E-value=95 Score=23.95 Aligned_cols=44 Identities=7% Similarity=-0.046 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhcCcEec----------------cC---hhhHHHHHHHHHHhHhhhCCCC
Q 031465 43 VEIMRKFSEQYARRSDTFFC----------------VD---KSVTSVVIKGLADHKDSLGAPL 86 (159)
Q Consensus 43 le~~~~f~ekyAek~Gy~lN----------------PD---~evt~~Vi~GLa~NK~rYG~~~ 86 (159)
-+++++.+.+.|++.||.-| |+ ..+...+++|+..--.++|+.+
T Consensus 15 s~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 15 FPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 35677888888888888655 43 3577889999999888999853
No 21
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.08 E-value=1.2e+02 Score=23.43 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCcEec------------------c--ChhhHHHHHHHHHHhHhhhCCCC
Q 031465 45 IMRKFSEQYARRSDTFFC------------------V--DKSVTSVVIKGLADHKDSLGAPL 86 (159)
Q Consensus 45 ~~~~f~ekyAek~Gy~lN------------------P--D~evt~~Vi~GLa~NK~rYG~~~ 86 (159)
++++.+.+.|++.||.-| | +..+...+++|+.+--.++|+..
T Consensus 32 ~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 93 (332)
T 2hsg_A 32 STRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNI 93 (332)
T ss_dssp HHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 455556677777777544 2 23467889999999888899864
No 22
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=20.04 E-value=1.4e+02 Score=20.27 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCC
Q 031465 40 EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (159)
Q Consensus 40 ee~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~ 85 (159)
.+.+...+.++..+++..+.-. .|...+..++.-|+.|--+||..
T Consensus 13 ~~~~~~~r~~~~~~~~~~~~~~-~~~~~l~~il~~l~~Nai~h~~~ 57 (145)
T 1th8_A 13 SENESFARVTVAAFVAQLDPTM-DELTEIKTVVSEAVTNAIIHGYN 57 (145)
T ss_dssp TTHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhhHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888999999998877544 46778889999999999999975
Done!