Query 031467
Match_columns 159
No_of_seqs 135 out of 445
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 14:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.4 3.4E-13 7.4E-18 102.7 5.6 68 85-155 38-105 (111)
2 COG0484 DnaJ DnaJ-class molecu 99.3 5.5E-13 1.2E-17 118.8 3.3 79 71-151 121-212 (371)
3 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.3 5.3E-12 1.2E-16 86.7 3.9 56 91-146 1-66 (66)
4 PRK14298 chaperone protein Dna 99.0 3.1E-10 6.7E-15 100.2 4.3 80 71-150 120-212 (377)
5 PRK14276 chaperone protein Dna 99.0 3.7E-10 7.9E-15 99.6 4.6 79 71-149 125-216 (380)
6 PRK14280 chaperone protein Dna 99.0 4.8E-10 1E-14 98.8 5.2 80 71-150 122-214 (376)
7 PRK14282 chaperone protein Dna 99.0 5.2E-10 1.1E-14 98.2 5.1 80 71-150 131-223 (369)
8 PRK14278 chaperone protein Dna 99.0 4.2E-10 9.1E-15 99.3 4.3 80 71-150 118-210 (378)
9 PRK14296 chaperone protein Dna 99.0 4.2E-10 9E-15 99.3 3.5 79 71-149 128-219 (372)
10 TIGR02349 DnaJ_bact chaperone 98.9 1.1E-09 2.3E-14 95.2 5.4 80 71-150 122-214 (354)
11 PRK14277 chaperone protein Dna 98.9 1E-09 2.2E-14 97.0 4.7 79 71-149 134-225 (386)
12 PRK14279 chaperone protein Dna 98.9 1.6E-09 3.5E-14 96.1 5.3 75 71-149 152-239 (392)
13 PRK14281 chaperone protein Dna 98.9 1.2E-09 2.5E-14 97.1 4.1 80 71-150 142-233 (397)
14 PRK14285 chaperone protein Dna 98.9 1.7E-09 3.7E-14 95.1 4.6 75 71-149 125-212 (365)
15 PRK14297 chaperone protein Dna 98.9 2.1E-09 4.5E-14 94.7 4.8 79 71-149 127-218 (380)
16 PRK14286 chaperone protein Dna 98.9 2.4E-09 5.1E-14 94.4 5.0 75 72-150 130-217 (372)
17 PRK14287 chaperone protein Dna 98.9 2.1E-09 4.5E-14 94.7 4.5 79 71-149 117-208 (371)
18 PTZ00037 DnaJ_C chaperone prot 98.9 3E-09 6.4E-14 95.8 5.3 80 71-150 129-222 (421)
19 PRK14300 chaperone protein Dna 98.9 3.2E-09 7E-14 93.4 5.4 76 71-150 124-212 (372)
20 PRK14284 chaperone protein Dna 98.8 2.7E-09 5.8E-14 94.5 4.4 75 71-149 137-224 (391)
21 PRK10767 chaperone protein Dna 98.8 4.4E-09 9.6E-14 92.2 5.2 75 72-150 122-209 (371)
22 PRK14288 chaperone protein Dna 98.8 3.6E-09 7.8E-14 93.2 4.5 76 71-150 119-206 (369)
23 PRK14301 chaperone protein Dna 98.8 2.8E-09 6E-14 94.0 3.8 76 71-150 123-211 (373)
24 PRK14295 chaperone protein Dna 98.8 4.9E-09 1.1E-13 93.0 4.9 76 71-150 145-233 (389)
25 PRK14283 chaperone protein Dna 98.8 5.4E-09 1.2E-13 92.1 4.9 80 71-150 125-217 (378)
26 PRK14289 chaperone protein Dna 98.8 4.5E-09 9.8E-14 92.7 4.2 79 72-150 134-225 (386)
27 PRK14293 chaperone protein Dna 98.8 5E-09 1.1E-13 92.2 4.4 80 71-150 122-214 (374)
28 PRK14291 chaperone protein Dna 98.8 6.5E-09 1.4E-13 91.8 4.9 75 72-150 136-222 (382)
29 PRK14294 chaperone protein Dna 98.8 4.7E-09 1E-13 92.1 3.3 76 71-150 123-211 (366)
30 PRK14290 chaperone protein Dna 98.7 8.8E-09 1.9E-13 90.4 4.8 80 71-150 128-219 (365)
31 PRK14292 chaperone protein Dna 98.7 1.1E-08 2.4E-13 89.8 4.2 80 71-150 118-211 (371)
32 KOG2813 Predicted molecular ch 98.6 1.3E-08 2.9E-13 90.5 2.8 113 37-151 114-271 (406)
33 COG1107 Archaea-specific RecJ- 98.6 2.3E-08 5E-13 94.3 3.9 64 88-151 2-83 (715)
34 KOG0712 Molecular chaperone (D 98.0 5.2E-06 1.1E-10 73.7 4.6 79 71-149 106-199 (337)
35 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 1.1E-05 2.3E-10 55.4 3.9 39 102-149 1-54 (66)
36 COG0484 DnaJ DnaJ-class molecu 97.4 0.0001 2.2E-09 66.4 3.1 39 87-137 158-209 (371)
37 PLN03165 chaperone protein dna 97.2 0.00034 7.3E-09 53.6 3.0 34 89-137 53-98 (111)
38 PRK14279 chaperone protein Dna 97.1 0.00043 9.3E-09 61.8 3.4 41 100-149 174-225 (392)
39 PRK14296 chaperone protein Dna 97.0 0.00051 1.1E-08 60.9 3.4 41 100-149 150-205 (372)
40 PRK14284 chaperone protein Dna 97.0 0.00047 1E-08 61.3 3.1 41 100-149 159-210 (391)
41 PRK10767 chaperone protein Dna 97.0 0.00073 1.6E-08 59.5 3.6 41 100-149 143-194 (371)
42 PRK14282 chaperone protein Dna 96.9 0.00079 1.7E-08 59.4 3.4 41 100-149 153-208 (369)
43 PRK14298 chaperone protein Dna 96.9 0.00066 1.4E-08 60.3 2.9 39 87-137 157-210 (377)
44 PRK14300 chaperone protein Dna 96.9 0.00055 1.2E-08 60.5 2.3 23 126-148 163-196 (372)
45 PRK14301 chaperone protein Dna 96.9 0.00085 1.8E-08 59.5 3.4 41 100-149 145-196 (373)
46 PRK14286 chaperone protein Dna 96.9 0.0009 1.9E-08 59.3 3.6 41 100-149 151-202 (372)
47 PRK14276 chaperone protein Dna 96.8 0.00078 1.7E-08 59.8 2.7 41 100-149 147-202 (380)
48 PRK14285 chaperone protein Dna 96.8 0.00085 1.8E-08 59.3 2.9 10 101-110 187-196 (365)
49 COG1107 Archaea-specific RecJ- 96.8 0.00081 1.8E-08 64.2 2.7 23 89-111 54-80 (715)
50 PRK14297 chaperone protein Dna 96.8 0.0011 2.4E-08 58.8 3.2 41 100-149 149-204 (380)
51 PRK14295 chaperone protein Dna 96.8 0.0012 2.7E-08 58.8 3.5 41 100-149 167-218 (389)
52 PRK14278 chaperone protein Dna 96.8 0.00086 1.9E-08 59.5 2.4 39 87-137 155-208 (378)
53 cd03031 GRX_GRX_like Glutaredo 96.7 0.002 4.4E-08 50.9 4.1 63 71-139 85-147 (147)
54 PTZ00037 DnaJ_C chaperone prot 96.7 0.0017 3.6E-08 58.9 3.9 42 86-137 164-220 (421)
55 PRK14288 chaperone protein Dna 96.7 0.0013 2.8E-08 58.3 2.9 22 127-148 158-190 (369)
56 PRK14287 chaperone protein Dna 96.7 0.0013 2.7E-08 58.3 2.9 41 100-149 139-194 (371)
57 PRK14290 chaperone protein Dna 96.7 0.0013 2.8E-08 58.0 2.9 39 87-137 164-217 (365)
58 PRK14294 chaperone protein Dna 96.6 0.0016 3.6E-08 57.4 3.5 41 100-149 145-196 (366)
59 TIGR02642 phage_xxxx uncharact 96.6 0.0013 2.7E-08 54.4 2.4 10 139-148 118-127 (186)
60 PRK14289 chaperone protein Dna 96.6 0.0013 2.9E-08 58.3 2.6 40 86-137 169-223 (386)
61 PRK14291 chaperone protein Dna 96.6 0.0018 3.8E-08 57.6 3.3 40 100-148 157-207 (382)
62 PRK14280 chaperone protein Dna 96.6 0.0012 2.7E-08 58.4 2.1 40 86-137 158-212 (376)
63 PRK14293 chaperone protein Dna 96.4 0.0031 6.7E-08 55.8 3.9 40 100-148 144-198 (374)
64 PRK14277 chaperone protein Dna 96.4 0.0018 4E-08 57.5 2.5 39 87-137 171-224 (386)
65 KOG2824 Glutaredoxin-related p 96.4 0.0042 9.2E-08 54.4 4.6 51 89-143 230-280 (281)
66 PRK14281 chaperone protein Dna 96.4 0.0024 5.2E-08 57.1 3.1 39 87-137 178-231 (397)
67 TIGR02349 DnaJ_bact chaperone 96.4 0.0022 4.8E-08 56.0 2.6 39 87-137 159-212 (354)
68 PRK14283 chaperone protein Dna 96.4 0.0029 6.4E-08 56.0 3.4 41 100-149 147-202 (378)
69 KOG2813 Predicted molecular ch 96.0 0.0029 6.2E-08 57.0 1.6 34 90-138 236-269 (406)
70 PRK14292 chaperone protein Dna 96.0 0.0045 9.8E-08 54.5 2.7 38 88-137 157-209 (371)
71 TIGR02642 phage_xxxx uncharact 95.7 0.0074 1.6E-07 49.9 2.4 28 87-114 98-130 (186)
72 KOG0715 Molecular chaperone (D 95.5 0.0055 1.2E-07 53.1 1.0 60 86-149 162-230 (288)
73 PF07092 DUF1356: Protein of u 91.4 0.077 1.7E-06 45.6 0.8 29 125-153 27-55 (238)
74 KOG0712 Molecular chaperone (D 89.7 0.27 5.9E-06 44.1 2.7 41 87-137 142-198 (337)
75 TIGR00630 uvra excinuclease AB 87.7 0.4 8.6E-06 47.9 2.6 33 101-136 738-770 (924)
76 PF07092 DUF1356: Protein of u 84.9 0.46 9.9E-06 40.9 1.3 26 88-113 27-52 (238)
77 COG0178 UvrA Excinuclease ATPa 84.1 0.79 1.7E-05 45.9 2.7 32 101-135 732-763 (935)
78 PRK00349 uvrA excinuclease ABC 82.4 0.93 2E-05 45.4 2.4 32 101-135 740-771 (943)
79 PRK00635 excinuclease ABC subu 82.0 0.95 2.1E-05 48.3 2.4 33 101-136 1609-1641(1809)
80 TIGR00630 uvra excinuclease AB 81.8 0.93 2E-05 45.3 2.2 26 125-150 736-773 (924)
81 cd03031 GRX_GRX_like Glutaredo 78.5 1.7 3.7E-05 34.4 2.3 11 100-110 100-110 (147)
82 PRK00349 uvrA excinuclease ABC 74.4 1.6 3.4E-05 43.8 1.4 26 125-150 738-775 (943)
83 KOG2824 Glutaredoxin-related p 70.9 3.2 7E-05 36.6 2.3 25 126-150 230-254 (281)
84 PRK00635 excinuclease ABC subu 70.7 2.4 5.3E-05 45.4 1.8 25 125-149 1607-1643(1809)
85 TIGR03655 anti_R_Lar restricti 64.9 8.5 0.00018 25.1 2.9 11 100-110 2-12 (53)
86 COG5082 AIR1 Arginine methyltr 64.1 7 0.00015 32.7 2.9 28 83-110 55-89 (190)
87 PF13901 DUF4206: Domain of un 56.3 5 0.00011 32.9 0.8 49 87-142 141-195 (202)
88 COG1198 PriA Primosomal protei 56.1 39 0.00085 33.4 6.9 65 71-145 408-484 (730)
89 KOG0715 Molecular chaperone (D 55.2 6.8 0.00015 34.1 1.4 10 139-148 206-215 (288)
90 PF14353 CpXC: CpXC protein 55.0 13 0.00029 27.7 2.9 38 100-137 2-50 (128)
91 PF13719 zinc_ribbon_5: zinc-r 52.7 13 0.00027 22.8 2.0 12 100-111 3-14 (37)
92 COG0178 UvrA Excinuclease ATPa 52.4 8.5 0.00018 38.9 1.8 23 126-148 731-765 (935)
93 TIGR02098 MJ0042_CXXC MJ0042 f 51.8 18 0.00039 21.6 2.6 12 100-111 3-14 (38)
94 PRK00488 pheS phenylalanyl-tRN 51.6 8.4 0.00018 34.7 1.5 20 126-148 261-280 (339)
95 PF03589 Antiterm: Antitermina 50.1 6.8 0.00015 29.0 0.5 10 101-110 7-16 (95)
96 PF08273 Prim_Zn_Ribbon: Zinc- 50.1 13 0.00027 23.8 1.7 31 100-133 4-34 (40)
97 COG5222 Uncharacterized conser 48.9 5.8 0.00013 36.1 0.0 28 77-104 263-290 (427)
98 KOG2593 Transcription initiati 45.3 19 0.0004 33.8 2.7 38 71-108 111-162 (436)
99 PRK04023 DNA polymerase II lar 44.6 24 0.00052 36.5 3.5 51 82-145 620-672 (1121)
100 PRK14890 putative Zn-ribbon RN 44.6 34 0.00073 23.8 3.3 43 86-143 5-55 (59)
101 PF14369 zf-RING_3: zinc-finge 41.8 24 0.00052 21.6 2.0 6 128-133 24-29 (35)
102 TIGR00595 priA primosomal prot 41.5 28 0.00061 32.3 3.3 48 88-145 213-262 (505)
103 PTZ00368 universal minicircle 40.6 34 0.00074 26.1 3.2 12 138-149 105-116 (148)
104 PF08792 A2L_zn_ribbon: A2L zi 40.4 34 0.00073 20.8 2.5 12 100-111 4-15 (33)
105 PF14354 Lar_restr_allev: Rest 38.1 35 0.00075 22.2 2.5 15 100-115 4-18 (61)
106 PF07295 DUF1451: Protein of u 36.4 25 0.00055 28.0 1.9 13 96-108 109-121 (146)
107 TIGR00757 RNaseEG ribonuclease 36.2 18 0.0004 33.1 1.2 12 138-149 392-403 (414)
108 PRK14559 putative protein seri 34.9 33 0.00071 33.4 2.7 42 89-144 2-49 (645)
109 smart00778 Prim_Zn_Ribbon Zinc 34.9 39 0.00084 21.2 2.2 16 100-115 4-19 (37)
110 COG4643 Uncharacterized protei 34.8 30 0.00065 31.7 2.3 38 94-136 28-66 (366)
111 PRK00420 hypothetical protein; 33.5 47 0.001 25.5 2.9 34 70-107 9-48 (112)
112 PF07295 DUF1451: Protein of u 32.4 38 0.00083 26.9 2.3 27 124-150 111-144 (146)
113 PRK05580 primosome assembly pr 32.1 59 0.0013 31.3 3.9 48 88-145 381-430 (679)
114 PRK03564 formate dehydrogenase 32.0 53 0.0011 29.3 3.4 63 71-145 170-261 (309)
115 PRK00488 pheS phenylalanyl-tRN 29.5 27 0.00059 31.4 1.2 23 88-113 260-282 (339)
116 PF04438 zf-HIT: HIT zinc fing 29.0 39 0.00085 20.1 1.4 18 126-143 3-20 (30)
117 TIGR00757 RNaseEG ribonuclease 28.9 29 0.00063 31.8 1.2 14 100-113 391-404 (414)
118 PRK14714 DNA polymerase II lar 27.9 59 0.0013 34.4 3.3 44 89-145 668-718 (1337)
119 PRK11032 hypothetical protein; 26.9 43 0.00094 27.2 1.8 13 138-150 144-156 (160)
120 PRK14873 primosome assembly pr 26.4 59 0.0013 31.6 2.9 49 88-146 383-432 (665)
121 TIGR01562 FdhE formate dehydro 26.2 72 0.0016 28.3 3.2 51 98-151 183-239 (305)
122 PF01155 HypA: Hydrogenase exp 25.7 43 0.00094 25.0 1.5 31 80-110 62-97 (113)
123 PF13453 zf-TFIIB: Transcripti 24.9 53 0.0011 20.2 1.6 6 102-107 2-7 (41)
124 PF08271 TF_Zn_Ribbon: TFIIB z 24.6 88 0.0019 19.3 2.6 9 101-109 2-10 (43)
125 TIGR00595 priA primosomal prot 24.0 69 0.0015 29.7 2.8 37 86-135 220-263 (505)
126 PRK11032 hypothetical protein; 23.4 69 0.0015 26.1 2.3 33 96-136 121-153 (160)
127 PF13717 zinc_ribbon_4: zinc-r 22.8 68 0.0015 19.6 1.7 11 100-110 3-13 (36)
128 PRK12380 hydrogenase nickel in 22.7 90 0.0019 23.4 2.7 30 80-109 62-96 (113)
129 PRK12775 putative trifunctiona 22.4 66 0.0014 32.6 2.5 53 99-157 796-856 (1006)
130 PRK06921 hypothetical protein; 22.3 47 0.001 28.1 1.3 10 101-110 34-43 (266)
131 PRK12722 transcriptional activ 22.2 53 0.0012 27.4 1.5 24 74-97 115-143 (187)
132 PRK11712 ribonuclease G; Provi 22.0 34 0.00073 32.2 0.4 12 126-137 403-414 (489)
133 PRK14892 putative transcriptio 21.4 85 0.0018 23.6 2.3 10 133-142 39-48 (99)
134 PRK05978 hypothetical protein; 21.2 47 0.001 26.7 1.0 7 126-132 53-59 (148)
135 PF14205 Cys_rich_KTR: Cystein 20.4 91 0.002 21.5 2.1 34 98-134 3-37 (55)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.40 E-value=3.4e-13 Score=102.74 Aligned_cols=68 Identities=25% Similarity=0.735 Sum_probs=57.5
Q ss_pred CCCCccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceeeCCCCCceeEEeeccCCC
Q 031467 85 QPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEP 155 (159)
Q Consensus 85 ~~r~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~C~~C~GtG~v~kwl~~~ 155 (159)
....+.|..|+|+|..+|+.|+|+|++..... ...+..++|+.|.|+|+..|+.|+|.|++.+||..-
T Consensus 38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~---g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~ 105 (111)
T PLN03165 38 RENTQPCFPCSGTGAQVCRFCVGSGNVTVELG---GGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRR 105 (111)
T ss_pred hccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC---CcEEEEEECCCCCCcceeeCCCCCCCEEEeeeeccc
Confidence 34578899999999999999999999864321 122567899999999999999999999999999764
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.5e-13 Score=118.83 Aligned_cols=79 Identities=32% Similarity=0.600 Sum_probs=64.9
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
++..-||.|..-..+ ++.+.|+.|+|+|+ ++|+.|+|+|+++..+++ ...+.+++|+.|+|+|.+
T Consensus 121 ~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~ 198 (371)
T COG0484 121 NLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKD 198 (371)
T ss_pred EEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCC
Confidence 555556666555544 67889999999987 689999999999887755 233678999999999998
Q ss_pred eCCCCCceeEEeec
Q 031467 138 CCSDCKGTGFRAKW 151 (159)
Q Consensus 138 ~C~~C~GtG~v~kw 151 (159)
+|++|+|.|++.++
T Consensus 199 pC~~C~G~G~v~~~ 212 (371)
T COG0484 199 PCGKCKGKGRVKKK 212 (371)
T ss_pred CCCCCCCCCeEeee
Confidence 89999999999876
No 3
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.25 E-value=5.3e-12 Score=86.74 Aligned_cols=56 Identities=34% Similarity=0.778 Sum_probs=43.9
Q ss_pred CCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee----eCCCCCcee
Q 031467 91 CSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV----CCSDCKGTG 146 (159)
Q Consensus 91 C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i----~C~~C~GtG 146 (159)
|+.|+|+|+ .+|+.|+|+|++....+....+.+..++|+.|+|+|++ +|++|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999998 57999999999987665433444678999999999998 599999986
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.1e-10 Score=100.24 Aligned_cols=80 Identities=33% Similarity=0.600 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++....+......+..++|+.|.|+|.+
T Consensus 120 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 199 (377)
T PRK14298 120 DLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIES 199 (377)
T ss_pred EEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCC
Confidence 444446777665555 57889999999996 67999999999876554322333667899999999987
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|+.|+|.|.+..
T Consensus 200 ~C~~C~G~g~v~~ 212 (377)
T PRK14298 200 PCPVCSGTGKVRK 212 (377)
T ss_pred CCCCCCCccEEEE
Confidence 9999999999853
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.7e-10 Score=99.64 Aligned_cols=79 Identities=28% Similarity=0.652 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++....++.....+...+|+.|.|+|++
T Consensus 125 ~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 204 (380)
T PRK14276 125 RVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKE 204 (380)
T ss_pred EEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccC
Confidence 344446676655544 67889999999996 57999999999876655433222457899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|.|++.
T Consensus 205 ~C~~C~G~g~~~ 216 (380)
T PRK14276 205 PCQTCHGTGHEK 216 (380)
T ss_pred CCCCCCCceEEE
Confidence 999999999875
No 6
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=4.8e-10 Score=98.79 Aligned_cols=80 Identities=26% Similarity=0.592 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++....+......+...+|+.|+|+|.+
T Consensus 122 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 201 (376)
T PRK14280 122 TMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKE 201 (376)
T ss_pred EEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecC
Confidence 344446777665554 57889999999995 57999999999876554322222457899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|+.|+|.|.+.+
T Consensus 202 ~C~~C~G~g~v~~ 214 (376)
T PRK14280 202 KCPTCHGKGKVRK 214 (376)
T ss_pred CCCCCCCceEEEE
Confidence 8999999998853
No 7
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=5.2e-10 Score=98.20 Aligned_cols=80 Identities=24% Similarity=0.509 Sum_probs=61.7
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. ++|+.|+|+|++....++.....+..++|+.|.|+|++
T Consensus 131 ~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 210 (369)
T PRK14282 131 EIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGE 210 (369)
T ss_pred EEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCC
Confidence 344445666554444 57889999999996 57999999999876655433333567899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
.|+.|+|.|++..
T Consensus 211 ~C~~C~G~g~v~~ 223 (369)
T PRK14282 211 YCHECGGSGRIRR 223 (369)
T ss_pred CCCCCCCceeEEE
Confidence 9999999998765
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=4.2e-10 Score=99.31 Aligned_cols=80 Identities=23% Similarity=0.482 Sum_probs=61.2
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++....+.+....+..++|+.|+|+|.+
T Consensus 118 ~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 197 (378)
T PRK14278 118 RMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPD 197 (378)
T ss_pred EEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCC
Confidence 344446777665555 57889999999996 57999999999866544322222457799999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|+.|+|.|.+.+
T Consensus 198 ~C~~C~G~g~v~~ 210 (378)
T PRK14278 198 PCHECAGDGRVRA 210 (378)
T ss_pred CCCCCCCceeEec
Confidence 9999999998753
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=4.2e-10 Score=99.26 Aligned_cols=79 Identities=25% Similarity=0.534 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++....++.....+..++|+.|.|+|++
T Consensus 128 ~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~ 207 (372)
T PRK14296 128 DIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKN 207 (372)
T ss_pred EeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecc
Confidence 555566777655544 57889999999996 57999999999876654322222456899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
.|+.|+|.|.+.
T Consensus 208 ~C~~C~G~g~v~ 219 (372)
T PRK14296 208 KCKNCKGKGKYL 219 (372)
T ss_pred cccCCCCceEEE
Confidence 899999999875
No 10
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.94 E-value=1.1e-09 Score=95.22 Aligned_cols=80 Identities=30% Similarity=0.611 Sum_probs=61.9
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++....++.....+...+|+.|.|+|.+
T Consensus 122 ~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 201 (354)
T TIGR02349 122 DLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE 201 (354)
T ss_pred EEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCC
Confidence 334446777665555 67899999999995 57999999999876655433333557899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|+.|+|.|.+..
T Consensus 202 ~C~~C~G~g~v~~ 214 (354)
T TIGR02349 202 PCSTCKGKGRVKE 214 (354)
T ss_pred CCCCCCCCcEecc
Confidence 8999999998753
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=1e-09 Score=96.97 Aligned_cols=79 Identities=28% Similarity=0.532 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++....++.....+..++|+.|.|+|.+
T Consensus 134 ~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 213 (386)
T PRK14277 134 DLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITD 213 (386)
T ss_pred EEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccC
Confidence 444456777765555 57889999999996 57999999999876555332222456899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|.|.+.
T Consensus 214 ~C~~C~G~g~v~ 225 (386)
T PRK14277 214 PCNKCGGTGRIR 225 (386)
T ss_pred CCCCCCCCcEEe
Confidence 899999999985
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=1.6e-09 Score=96.10 Aligned_cols=75 Identities=27% Similarity=0.605 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....++ +.+++|+.|+|+|++
T Consensus 152 ~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~i~~ 227 (392)
T PRK14279 152 ETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAF----GFSEPCTDCRGTGSIIED 227 (392)
T ss_pred EEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecce----EEEEecCCCCceeEEeCC
Confidence 444456777655544 57889999999996 5799999999986554332 356899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|.|.+.
T Consensus 228 ~C~~C~G~g~v~ 239 (392)
T PRK14279 228 PCEECKGTGVTT 239 (392)
T ss_pred cCCCCCCCeEEE
Confidence 999999999885
No 13
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=1.2e-09 Score=97.06 Aligned_cols=80 Identities=25% Similarity=0.540 Sum_probs=62.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C 138 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~ 138 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++....+.+....+.+++|+.|.|+|.+ +
T Consensus 142 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~ 221 (397)
T PRK14281 142 RLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDR 221 (397)
T ss_pred EEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCC
Confidence 455556777765555 57889999999996 57999999999876554333332457899999999997 9
Q ss_pred CCCCCceeEEee
Q 031467 139 CSDCKGTGFRAK 150 (159)
Q Consensus 139 C~~C~GtG~v~k 150 (159)
|+.|+|.|.+..
T Consensus 222 C~~C~G~g~v~~ 233 (397)
T PRK14281 222 CPACYGEGIKQG 233 (397)
T ss_pred CCCCCCCccEec
Confidence 999999999853
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=1.7e-09 Score=95.08 Aligned_cols=75 Identities=31% Similarity=0.640 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
++..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....+ + +.+++|+.|.|+|.+
T Consensus 125 ~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~---~-~~~~~C~~C~G~G~~~~~ 200 (365)
T PRK14285 125 QIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGF---F-RVTTTCPKCYGNGKIISN 200 (365)
T ss_pred EEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCce---e-EEeeecCCCCCcccccCC
Confidence 444456777765555 57889999999996 579999999998764332 2 457899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|.|.+.
T Consensus 201 ~C~~C~G~g~v~ 212 (365)
T PRK14285 201 PCKSCKGKGSLK 212 (365)
T ss_pred CCCCCCCCCEEe
Confidence 999999999875
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.1e-09 Score=94.74 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=60.4
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++....+......+...+|+.|+|+|.+
T Consensus 127 ~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 206 (380)
T PRK14297 127 TINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIED 206 (380)
T ss_pred EEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCC
Confidence 344446666655544 57889999999996 57999999999876554332233567899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|..|+|.|.+.
T Consensus 207 ~C~~C~G~g~v~ 218 (380)
T PRK14297 207 PCNKCHGKGKVR 218 (380)
T ss_pred CCCCCCCCeEEE
Confidence 999999999764
No 16
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=2.4e-09 Score=94.40 Aligned_cols=75 Identities=37% Similarity=0.710 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467 72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C 138 (159)
Q Consensus 72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~ 138 (159)
+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....+ + +...+|+.|.|+|++ +
T Consensus 130 l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~---~-~~~~~C~~C~G~G~~~~~~ 205 (372)
T PRK14286 130 LEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGF---F-SVATTCPTCRGKGTVISNP 205 (372)
T ss_pred EEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEece---E-EEEEeCCCCCceeeEeccc
Confidence 33445677655555 67889999999996 679999999998655322 1 456799999999998 9
Q ss_pred CCCCCceeEEee
Q 031467 139 CSDCKGTGFRAK 150 (159)
Q Consensus 139 C~~C~GtG~v~k 150 (159)
|+.|+|.|.+.+
T Consensus 206 C~~C~G~g~~~~ 217 (372)
T PRK14286 206 CKTCGGQGLQEK 217 (372)
T ss_pred CCCCCCCcEEec
Confidence 999999999863
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=2.1e-09 Score=94.71 Aligned_cols=79 Identities=24% Similarity=0.589 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++....+......+..++|+.|.|+|++
T Consensus 117 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 196 (371)
T PRK14287 117 TMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ 196 (371)
T ss_pred EEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc
Confidence 333445666554444 57889999999995 57999999999876655433332457899999999998
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|.|.+.
T Consensus 197 ~C~~C~G~g~v~ 208 (371)
T PRK14287 197 KCATCGGKGKVR 208 (371)
T ss_pred cCCCCCCeeEEe
Confidence 899999999875
No 18
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.85 E-value=3e-09 Score=95.79 Aligned_cols=80 Identities=28% Similarity=0.682 Sum_probs=60.2
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee----
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---- 137 (159)
++..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++....++...+.+...+|+.|+|+|.+
T Consensus 129 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~ 208 (421)
T PTZ00037 129 HLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES 208 (421)
T ss_pred EeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc
Confidence 455556776655544 57889999999996 57999999998654443221222457899999999997
Q ss_pred -eCCCCCceeEEee
Q 031467 138 -CCSDCKGTGFRAK 150 (159)
Q Consensus 138 -~C~~C~GtG~v~k 150 (159)
+|+.|+|.|++..
T Consensus 209 ~~C~~C~G~g~v~~ 222 (421)
T PTZ00037 209 KKCKNCSGKGVKKT 222 (421)
T ss_pred ccCCcCCCcceeee
Confidence 6999999999863
No 19
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=3.2e-09 Score=93.43 Aligned_cols=76 Identities=26% Similarity=0.664 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....++ +...+|+.|.|+|.+
T Consensus 124 ~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~~~~ 199 (372)
T PRK14300 124 NLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFF----TIEQACHKCQGNGQIIKN 199 (372)
T ss_pred EEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceE----EEEEeCCCCCccceEeCC
Confidence 333445677665555 57899999999995 6799999999986543221 356799999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|++|+|.|++..
T Consensus 200 ~C~~C~G~g~v~~ 212 (372)
T PRK14300 200 PCKKCHGMGRYHK 212 (372)
T ss_pred CCCCCCCceEEEe
Confidence 9999999999853
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=2.7e-09 Score=94.49 Aligned_cols=75 Identities=29% Similarity=0.591 Sum_probs=58.6
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||++..-..+ .+.+.|..|+|+|. ++|+.|+|+|++.....+ + +...+|+.|+|+|.+
T Consensus 137 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~---~-~~~~~C~~C~G~G~~~~~ 212 (391)
T PRK14284 137 HITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGF---F-SMASTCPECGGEGRVITD 212 (391)
T ss_pred EEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEece---E-EEEEECCCCCCCCcccCC
Confidence 444446777655555 57889999999996 579999999998654322 1 456799999999997
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|.|++.
T Consensus 213 ~C~~C~G~g~v~ 224 (391)
T PRK14284 213 PCSVCRGQGRIK 224 (391)
T ss_pred cCCCCCCcceec
Confidence 999999999984
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=4.4e-09 Score=92.20 Aligned_cols=75 Identities=28% Similarity=0.658 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467 72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C 138 (159)
Q Consensus 72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~ 138 (159)
+..-||+++.-..+ .+.+.|..|+|+|. ..|+.|+|+|++.....++ +...+|+.|.|+|++ .
T Consensus 122 l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~~~~~ 197 (371)
T PRK10767 122 MEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFF----TVQQTCPTCHGRGKIIKDP 197 (371)
T ss_pred EEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceE----EEEEeCCCCCCceeECCCC
Confidence 33445677655444 57889999999996 4799999999986554321 356799999999998 9
Q ss_pred CCCCCceeEEee
Q 031467 139 CSDCKGTGFRAK 150 (159)
Q Consensus 139 C~~C~GtG~v~k 150 (159)
|+.|+|.|.+..
T Consensus 198 C~~C~G~g~v~~ 209 (371)
T PRK10767 198 CKKCHGQGRVEK 209 (371)
T ss_pred CCCCCCCceEee
Confidence 999999998853
No 22
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=3.6e-09 Score=93.17 Aligned_cols=76 Identities=29% Similarity=0.635 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C 138 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~ 138 (159)
.+..-||++..-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....++ +..++|+.|.|+|.+ +
T Consensus 119 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~~~~~ 194 (369)
T PRK14288 119 TIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFM----SFAQTCGACQGKGKIIKTP 194 (369)
T ss_pred eccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceE----EEEEecCCCCCCceEcccc
Confidence 455556777655444 46789999999996 5799999999986554322 455799999999987 9
Q ss_pred CCCCCceeEEee
Q 031467 139 CSDCKGTGFRAK 150 (159)
Q Consensus 139 C~~C~GtG~v~k 150 (159)
|+.|+|.|++.+
T Consensus 195 C~~C~G~g~v~~ 206 (369)
T PRK14288 195 CQACKGKTYILK 206 (369)
T ss_pred CccCCCcceEEE
Confidence 999999998854
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=2.8e-09 Score=94.00 Aligned_cols=76 Identities=29% Similarity=0.700 Sum_probs=60.2
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....+ + +...+|+.|.|+|++
T Consensus 123 ~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~---~-~~~~~C~~C~G~G~~~~~ 198 (373)
T PRK14301 123 NLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF---F-QIAVPCPVCRGEGRVITH 198 (373)
T ss_pred EEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeee---E-EEEEeCCCCCceeeecCC
Confidence 455567777765554 57889999999996 579999999998654322 1 457899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
.|+.|+|.|.+..
T Consensus 199 ~C~~C~G~g~v~~ 211 (373)
T PRK14301 199 PCPKCKGSGIVQQ 211 (373)
T ss_pred CCCCCCCCceecc
Confidence 9999999999853
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=4.9e-09 Score=93.02 Aligned_cols=76 Identities=25% Similarity=0.500 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++..... .+ +.+.+|+.|.|+|++
T Consensus 145 ~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g---~~-~~~~~C~~C~G~G~~~~~ 220 (389)
T PRK14295 145 EVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSG---GF-SLSEPCPDCKGRGLIADD 220 (389)
T ss_pred EEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEec---ce-EEEEecCCCcceeEEecc
Confidence 444456777765555 57889999999996 57999999999865432 12 456799999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|+.|+|.|++..
T Consensus 221 ~C~~C~G~g~~~~ 233 (389)
T PRK14295 221 PCLVCKGSGRAKS 233 (389)
T ss_pred CCCCCCCCceEee
Confidence 8999999998854
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=5.4e-09 Score=92.09 Aligned_cols=80 Identities=28% Similarity=0.498 Sum_probs=61.8
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
++..-||+++.-..+ .+.+.|..|+|+|. ..|+.|+|+|.+....++.....+...+|+.|.|+|.+
T Consensus 125 ~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 204 (378)
T PRK14283 125 EVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEK 204 (378)
T ss_pred EeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCC
Confidence 444556777766555 56789999999996 57999999999876554322222456899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|..|+|.|.+..
T Consensus 205 ~C~~C~G~g~v~~ 217 (378)
T PRK14283 205 PCSNCHGKGVVRE 217 (378)
T ss_pred CCCCCCCceeecc
Confidence 9999999998743
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=4.5e-09 Score=92.68 Aligned_cols=79 Identities=24% Similarity=0.529 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467 72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C 138 (159)
Q Consensus 72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~ 138 (159)
+..-||++..-..+ .+.+.|..|+|+|. ..|+.|+|+|++....+......+...+|+.|.|+|.+ .
T Consensus 134 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~ 213 (386)
T PRK14289 134 VKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKK 213 (386)
T ss_pred EEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcC
Confidence 33345666655444 67889999999996 57999999999876554322222457899999999997 9
Q ss_pred CCCCCceeEEee
Q 031467 139 CSDCKGTGFRAK 150 (159)
Q Consensus 139 C~~C~GtG~v~k 150 (159)
|+.|+|.|++..
T Consensus 214 C~~C~G~g~v~~ 225 (386)
T PRK14289 214 CKKCGGEGIVYG 225 (386)
T ss_pred CCCCCCCcEEee
Confidence 999999998753
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=5e-09 Score=92.19 Aligned_cols=80 Identities=23% Similarity=0.555 Sum_probs=60.9
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.=..+ .+.+.|..|+|+|. .+|+.|+|+|++....++.....+...+|+.|.|+|++
T Consensus 122 ~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 201 (374)
T PRK14293 122 DLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIED 201 (374)
T ss_pred EEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEecc
Confidence 444456777665544 67899999999996 46999999999865544322222456899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|..|+|.|++.+
T Consensus 202 ~C~~C~G~g~v~~ 214 (374)
T PRK14293 202 PCDACGGQGVKQV 214 (374)
T ss_pred CCCCCCCCccccc
Confidence 9999999998754
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=6.5e-09 Score=91.81 Aligned_cols=75 Identities=31% Similarity=0.644 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--eC
Q 031467 72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--CC 139 (159)
Q Consensus 72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--~C 139 (159)
+..-||+++.-..+ .+.+.|..|+|+|. .+|+.|+|+|++.....+ .+..++|+.|.|+|.+ +|
T Consensus 136 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~----~~~~~~C~~C~G~G~~~~~C 211 (382)
T PRK14291 136 VEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF----FRISQTCPTCGGEGVLREPC 211 (382)
T ss_pred EEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecce----EEEEecCCCCCCceEEccCC
Confidence 33346677655554 67889999999995 579999999998654321 1456899999999977 99
Q ss_pred CCCCceeEEee
Q 031467 140 SDCKGTGFRAK 150 (159)
Q Consensus 140 ~~C~GtG~v~k 150 (159)
+.|+|.|++..
T Consensus 212 ~~C~G~g~v~~ 222 (382)
T PRK14291 212 SKCNGRGLVIK 222 (382)
T ss_pred CCCCCCceEEe
Confidence 99999998854
No 29
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=4.7e-09 Score=92.13 Aligned_cols=76 Identities=26% Similarity=0.578 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--- 137 (159)
.+..-||+++.-..+ .+.+.|..|+|+|. ++|+.|+|+|.+.....+ + +..++|+.|.|+|++
T Consensus 123 ~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~---~-~~~~~C~~C~G~G~~~~~ 198 (366)
T PRK14294 123 DLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGF---F-SIRTTCPRCRGMGKVIVS 198 (366)
T ss_pred EEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeee---E-EEEeeCCCCCCcCeecCc
Confidence 455556777665544 57889999999996 479999999998643322 1 457899999999998
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
.|+.|+|.|.+..
T Consensus 199 ~C~~C~G~g~v~~ 211 (366)
T PRK14294 199 PCKTCHGQGRVRV 211 (366)
T ss_pred CCCCCCCceEeec
Confidence 9999999999853
No 30
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=8.8e-09 Score=90.38 Aligned_cols=80 Identities=30% Similarity=0.570 Sum_probs=59.2
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C 138 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~ 138 (159)
.+..-||++..-..+ .+.+.|..|+|+|. ..|+.|+|+|++...........+..++|+.|.|+|.+ +
T Consensus 128 ~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~ 207 (365)
T PRK14290 128 NLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK 207 (365)
T ss_pred EEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCC
Confidence 444556666644433 56789999999996 57999999998765543211111345799999999988 9
Q ss_pred CCCCCceeEEee
Q 031467 139 CSDCKGTGFRAK 150 (159)
Q Consensus 139 C~~C~GtG~v~k 150 (159)
|+.|+|.|++..
T Consensus 208 C~~C~G~g~v~~ 219 (365)
T PRK14290 208 CPRCNGTGTVVV 219 (365)
T ss_pred CCCCCCceeEEE
Confidence 999999999864
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.71 E-value=1.1e-08 Score=89.75 Aligned_cols=80 Identities=25% Similarity=0.507 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-- 137 (159)
.+..-||++++-..+ .+.+.|..|+|+|. .+|+.|+|+|.+....+......+...+|+.|.|.|.+
T Consensus 118 ~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 197 (371)
T PRK14292 118 EARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT 197 (371)
T ss_pred EEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC
Confidence 444456777655444 56789999999995 57999999999875544322222457899999999998
Q ss_pred -eCCCCCceeEEee
Q 031467 138 -CCSDCKGTGFRAK 150 (159)
Q Consensus 138 -~C~~C~GtG~v~k 150 (159)
+|+.|+|.|++..
T Consensus 198 ~~C~~C~G~g~v~~ 211 (371)
T PRK14292 198 DPCTVCRGRGRTLK 211 (371)
T ss_pred CCCCCCCCceEEee
Confidence 9999999998853
No 32
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-08 Score=90.54 Aligned_cols=113 Identities=19% Similarity=0.344 Sum_probs=77.3
Q ss_pred cEEecccCeeeeeccceeecccccccccCcccc--chHHHH-HH-HHhhhcCCC-------------------CCccCCC
Q 031467 37 MRVVPRGTSITSTRRSVCGVGVRASVVDSYESS--SNFVKR-ME-QAWLISQQP-------------------RPVSCSS 93 (159)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~~r~~A~~~~~~d~~--~~~~~~-~e-~aw~i~~~~-------------------r~~~C~~ 93 (159)
|.-+...|++.|.|...+|-|.- +.+--|=+. .|=+++ ++ ..|.+++.. -.+.|..
T Consensus 114 i~~~e~~~~~~~~l~tfveer~~-~~q~~PfT~~~~dG~~hg~~prlw~~d~~~~gp~mf~~~~~~~~vphs~~v~~ch~ 192 (406)
T KOG2813|consen 114 IWDFEVMPGHLFVLQTFVEERPG-SSQINPFTACNSDGTIHGFHPRLWGTDKCSRGPGMFSGVAHPAVVPHSMIVTFCHA 192 (406)
T ss_pred ceehhcCcceEEeeeeeeccccc-cceecccccCCcCCcccccCccccccccccCCCCcccccccceeccchHhhhhhhc
Confidence 34455669999999888886543 333333333 122222 23 568888772 2468999
Q ss_pred CCCCCcccCCCCCcccEEee-------------------ccc---ccccCCCCceEcCCCCccceeeCCCCCceeEEeec
Q 031467 94 CNSNGHIDCKWCAGTGFFIL-------------------GDN---MLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKW 151 (159)
Q Consensus 94 C~GsG~~~C~~C~GtG~i~~-------------------~~~---~~~~~~~~~~tCp~C~G~G~i~C~~C~GtG~v~kw 151 (159)
|+|.|+..|+.|+|+|.... +.. .+|.+ ++..+|+.|+|+|+++|.+|.|+|.+..+
T Consensus 193 c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G-~G~~~C~tC~grG~k~C~TC~gtgsll~~ 271 (406)
T KOG2813|consen 193 CLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHG-RGIKECHTCKGRGKKPCTTCSGTGSLLNY 271 (406)
T ss_pred ccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccC-CCcccCCcccCCCCcccccccCccceeee
Confidence 99999999999999994321 111 23444 67789999999999999999999987643
No 33
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.3e-08 Score=94.25 Aligned_cols=64 Identities=34% Similarity=0.678 Sum_probs=50.2
Q ss_pred CccCCCCCCCCc-----ccCCCCCcccEEeeccc-----c---cc-cCCCCceEcCCCCcccee----eCCCCCceeEEe
Q 031467 88 PVSCSSCNSNGH-----IDCKWCAGTGFFILGDN-----M---LC-QVPSRNTTCVICAGKGSV----CCSDCKGTGFRA 149 (159)
Q Consensus 88 ~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~-----~---~~-~~~~~~~tCp~C~G~G~i----~C~~C~GtG~v~ 149 (159)
...|+.|+|+|. ++|+.|+|+|++...+- + .. ...+...+|+.|+|+|.+ +|+.|.|+|++.
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred CccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 468999999996 57999999999843221 0 00 112446799999999998 999999999999
Q ss_pred ec
Q 031467 150 KW 151 (159)
Q Consensus 150 kw 151 (159)
.|
T Consensus 82 ~c 83 (715)
T COG1107 82 TC 83 (715)
T ss_pred ee
Confidence 88
No 34
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.2e-06 Score=73.74 Aligned_cols=79 Identities=25% Similarity=0.536 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccc-cCCCCceEcCCCCcccee---
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLC-QVPSRNTTCVICAGKGSV--- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~-~~~~~~~tCp~C~G~G~i--- 137 (159)
++..-||..+.-+.. .++..|+.|+|+|. ..|..|.|+|......++.. .+.+.+..|..|.|.|..
T Consensus 106 ~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~ 185 (337)
T KOG0712|consen 106 QLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISL 185 (337)
T ss_pred EEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccc
Confidence 555567777776444 68899999999996 46999999999876666433 445678999999999997
Q ss_pred --eCCCCCceeEEe
Q 031467 138 --CCSDCKGTGFRA 149 (159)
Q Consensus 138 --~C~~C~GtG~v~ 149 (159)
.|++|.|.+++.
T Consensus 186 kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 186 KDRCKTCSGAKVVR 199 (337)
T ss_pred cccCcccccchhhh
Confidence 999999999876
No 35
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.95 E-value=1.1e-05 Score=55.37 Aligned_cols=39 Identities=41% Similarity=0.800 Sum_probs=28.6
Q ss_pred CCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 102 CKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 102 C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 1 C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPG---------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-ST---------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCC---------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 899999998421 345789999999987 899999999995
No 36
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0001 Score=66.43 Aligned_cols=39 Identities=44% Similarity=0.997 Sum_probs=34.0
Q ss_pred CCccCCCCCCCCc-------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH-------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~-------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
.+++|++|+|+|. ++|+.|+|+|.+. ..+|+.|+|.|.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i------------~~pC~~C~G~G~v 209 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII------------KDPCGKCKGKGRV 209 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC------------CCCCCCCCCCCeE
Confidence 7899999999995 4799999999963 2479999999986
No 37
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.16 E-value=0.00034 Score=53.57 Aligned_cols=34 Identities=35% Similarity=0.860 Sum_probs=26.9
Q ss_pred ccCCCCCCCCc------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 89 VSCSSCNSNGH------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 89 ~~C~~C~GsG~------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
..|..|+|+|. .+|+.|+|+|++ .|+.|.|+|.+
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~ 98 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQ 98 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEE
Confidence 48999999985 368888888862 39999998876
No 38
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.09 E-value=0.00043 Score=61.78 Aligned_cols=41 Identities=34% Similarity=0.766 Sum_probs=30.9
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 174 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i 225 (392)
T PRK14279 174 APCTTCHGSGARPG---------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII 225 (392)
T ss_pred ccCCCCccccccCC---------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence 46999999987421 123579999999875 799999999874
No 39
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.00051 Score=60.94 Aligned_cols=41 Identities=34% Similarity=0.660 Sum_probs=30.3
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 150 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~ 205 (372)
T PRK14296 150 TNCSKCFGSGAESN---------SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII 205 (372)
T ss_pred eccCCCCCCccCCC---------CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence 46999999987311 223579999999864 699999999874
No 40
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.00047 Score=61.35 Aligned_cols=41 Identities=32% Similarity=0.708 Sum_probs=31.9
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|+.|+|+|++.
T Consensus 159 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 210 (391)
T PRK14284 159 KSCDACSGSGANSS---------QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI 210 (391)
T ss_pred ccCCCCcccccCCC---------CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc
Confidence 56999999997311 234679999999983 899999999873
No 41
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.96 E-value=0.00073 Score=59.51 Aligned_cols=41 Identities=34% Similarity=0.761 Sum_probs=31.5
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... .....|+.|+|+|.+ +|+.|+|+|++.
T Consensus 143 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK10767 143 VTCDTCHGSGAKPG---------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII 194 (371)
T ss_pred ccCCCCCCcccCCC---------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC
Confidence 46999999987421 223579999999975 599999999874
No 42
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.91 E-value=0.00079 Score=59.45 Aligned_cols=41 Identities=39% Similarity=0.754 Sum_probs=30.7
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|+.|+|+|++.
T Consensus 153 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 208 (369)
T PRK14282 153 ETCPHCGGTGVEPG---------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP 208 (369)
T ss_pred ccCCCCCccCCCCC---------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence 46999999987311 223579999999864 699999999874
No 43
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.90 E-value=0.00066 Score=60.31 Aligned_cols=39 Identities=36% Similarity=0.998 Sum_probs=32.1
Q ss_pred CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
.+..|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.+
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 210 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc------------CCCCCCCCCccEE
Confidence 4578999999995 3699999999852 2359999999986
No 44
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.88 E-value=0.00055 Score=60.54 Aligned_cols=23 Identities=43% Similarity=1.042 Sum_probs=12.5
Q ss_pred eEcCCCCcccee-----------eCCCCCceeEE
Q 031467 126 TTCVICAGKGSV-----------CCSDCKGTGFR 148 (159)
Q Consensus 126 ~tCp~C~G~G~i-----------~C~~C~GtG~v 148 (159)
.+|+.|+|+|.+ +|+.|+|+|++
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 196 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQI 196 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccceE
Confidence 345555555543 45555555555
No 45
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.88 E-value=0.00085 Score=59.48 Aligned_cols=41 Identities=34% Similarity=0.741 Sum_probs=31.8
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 145 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 196 (373)
T PRK14301 145 VTCDDCGGSGAAPG---------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI 196 (373)
T ss_pred ccCCCCCCcccCCC---------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence 46999999988411 223579999999964 799999999874
No 46
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.88 E-value=0.0009 Score=59.30 Aligned_cols=41 Identities=37% Similarity=0.742 Sum_probs=28.0
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 151 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 202 (372)
T PRK14286 151 ESCVDCNGSGASKG---------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI 202 (372)
T ss_pred ccCCCCcCCCcCCC---------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence 45888888886311 123568888888854 688888888774
No 47
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00078 Score=59.76 Aligned_cols=41 Identities=34% Similarity=0.723 Sum_probs=31.1
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|+.|+|+|++.
T Consensus 147 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 202 (380)
T PRK14276 147 ATCHTCNGSGAKPG---------TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI 202 (380)
T ss_pred ccCCCCcCcccCCC---------CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence 46999999987311 223579999999864 699999999874
No 48
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.00085 Score=59.33 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=5.5
Q ss_pred cCCCCCcccE
Q 031467 101 DCKWCAGTGF 110 (159)
Q Consensus 101 ~C~~C~GtG~ 110 (159)
+|+.|+|+|+
T Consensus 187 ~C~~C~G~G~ 196 (365)
T PRK14285 187 TCPKCYGNGK 196 (365)
T ss_pred ecCCCCCccc
Confidence 4555555555
No 49
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.00081 Score=64.23 Aligned_cols=23 Identities=35% Similarity=0.999 Sum_probs=11.8
Q ss_pred ccCCCCCCCCcc----cCCCCCcccEE
Q 031467 89 VSCSSCNSNGHI----DCKWCAGTGFF 111 (159)
Q Consensus 89 ~~C~~C~GsG~~----~C~~C~GtG~i 111 (159)
++|..|+|+|.+ +|+.|+|+|.+
T Consensus 54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 54 IPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred CCCCeeccceeEEEEeecccCCCceeE
Confidence 455555555542 35555555554
No 50
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.0011 Score=58.76 Aligned_cols=41 Identities=34% Similarity=0.749 Sum_probs=32.6
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|+.|+|+|++.
T Consensus 149 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 204 (380)
T PRK14297 149 ENCETCNGTGAKPG---------TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI 204 (380)
T ss_pred ccCCCcccccccCC---------CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence 46999999998411 224679999999864 799999999884
No 51
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.0012 Score=58.80 Aligned_cols=41 Identities=41% Similarity=0.839 Sum_probs=31.0
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|+.|+|+|++.
T Consensus 167 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (389)
T PRK14295 167 APCPACSGTGAKNG---------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA 218 (389)
T ss_pred ccCCCCcccccCCC---------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence 46999999987421 223579999999863 799999999873
No 52
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.00086 Score=59.54 Aligned_cols=39 Identities=41% Similarity=0.971 Sum_probs=32.2
Q ss_pred CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
.+..|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 208 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI------------PDPCHECAGDGRV 208 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee------------CCCCCCCCCceeE
Confidence 4678999999995 3699999999962 1359999999975
No 53
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.72 E-value=0.002 Score=50.92 Aligned_cols=63 Identities=17% Similarity=0.405 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhhcCCCCCccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceeeC
Q 031467 71 NFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCC 139 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~~r~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~C 139 (159)
.|.+.++.+ ........|..|.|.+-+.|..|+|+=++...+.. ......+|+.|+=-|.+.|
T Consensus 85 ~L~~lL~~~---~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~---~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 85 ELRKLLKGI---RARAGGGVCEGCGGARFVPCSECNGSCKVFAENAT---AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CHHHHHhhc---ccccCCCCCCCCCCcCeEECCCCCCcceEEeccCc---ccccEEECCCCCccccccC
Confidence 455555544 12233457999999999999999999988654421 1134578999998888876
No 54
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.70 E-value=0.0017 Score=58.92 Aligned_cols=42 Identities=36% Similarity=0.744 Sum_probs=33.5
Q ss_pred CCCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 86 PRPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 86 ~r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
..+..|+.|+|+|. .+|+.|+|+|++... ..+|+.|.|+|.+
T Consensus 164 ~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~v 220 (421)
T PTZ00037 164 DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE----------SKKCKNCSGKGVK 220 (421)
T ss_pred CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc----------cccCCcCCCccee
Confidence 35678999999994 379999999996321 2469999999976
No 55
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.67 E-value=0.0013 Score=58.27 Aligned_cols=22 Identities=45% Similarity=1.084 Sum_probs=12.3
Q ss_pred EcCCCCcccee-----------eCCCCCceeEE
Q 031467 127 TCVICAGKGSV-----------CCSDCKGTGFR 148 (159)
Q Consensus 127 tCp~C~G~G~i-----------~C~~C~GtG~v 148 (159)
+|+.|.|+|.+ +|+.|+|+|++
T Consensus 158 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 190 (369)
T PRK14288 158 TCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI 190 (369)
T ss_pred CCCCCCCCcEEEEEeceEEEEEecCCCCCCceE
Confidence 46666665543 46666666554
No 56
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.66 E-value=0.0013 Score=58.34 Aligned_cols=41 Identities=34% Similarity=0.747 Sum_probs=32.0
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 139 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 139 ETCGTCHGSGAKPG---------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred ccCCCCCCcccCCC---------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 46999999997311 234679999999863 699999999874
No 57
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.66 E-value=0.0013 Score=58.00 Aligned_cols=39 Identities=31% Similarity=0.920 Sum_probs=32.6
Q ss_pred CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP------------EEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc------------cCCCCCCCCceeE
Confidence 5678999999994 4799999999962 2469999999986
No 58
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.65 E-value=0.0016 Score=57.38 Aligned_cols=41 Identities=37% Similarity=0.759 Sum_probs=30.8
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 145 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~ 196 (366)
T PRK14294 145 ETCEECHGSGCEPG---------TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI 196 (366)
T ss_pred ccCCCCCCccccCC---------CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence 46999999988421 123579999999864 799999999873
No 59
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.63 E-value=0.0013 Score=54.36 Aligned_cols=10 Identities=50% Similarity=1.079 Sum_probs=4.5
Q ss_pred CCCCCceeEE
Q 031467 139 CSDCKGTGFR 148 (159)
Q Consensus 139 C~~C~GtG~v 148 (159)
|+.|+|+|++
T Consensus 118 C~~C~G~G~v 127 (186)
T TIGR02642 118 CDTCAGTGRF 127 (186)
T ss_pred CCCCCCccEE
Confidence 4444444444
No 60
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.61 E-value=0.0013 Score=58.26 Aligned_cols=40 Identities=33% Similarity=0.872 Sum_probs=32.6
Q ss_pred CCCccCCCCCCCCcc---------------cCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 86 PRPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 86 ~r~~~C~~C~GsG~~---------------~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
.....|+.|+|+|.+ +|+.|+|+|++. ...|+.|.|+|.+
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 223 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------------CcCCCCCCCCcEE
Confidence 456889999999863 699999999852 2459999999975
No 61
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.60 E-value=0.0018 Score=57.55 Aligned_cols=40 Identities=35% Similarity=0.879 Sum_probs=29.1
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEE
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFR 148 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v 148 (159)
+.|..|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|.+
T Consensus 157 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 157 VPCEACGGTGYDPG---------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred ccCCCCccccCCCC---------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 46888998887311 224579999998864 79999999864
No 62
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.57 E-value=0.0012 Score=58.43 Aligned_cols=40 Identities=40% Similarity=0.887 Sum_probs=32.1
Q ss_pred CCCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 86 PRPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 86 ~r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
.....|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 158 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 212 (376)
T PRK14280 158 TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee------------cCCCCCCCCceEE
Confidence 34678999999995 3699999999862 2359999999976
No 63
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0031 Score=55.80 Aligned_cols=40 Identities=40% Similarity=0.789 Sum_probs=32.1
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEE
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFR 148 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v 148 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|++|.|.|++
T Consensus 144 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 198 (374)
T PRK14293 144 ETCETCRGSGAKPG---------TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV 198 (374)
T ss_pred ccCCCCCCcCCCCC---------CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE
Confidence 57999999997321 234689999999974 69999999997
No 64
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0018 Score=57.52 Aligned_cols=39 Identities=36% Similarity=0.999 Sum_probs=32.2
Q ss_pred CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
....|..|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 224 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII------------TDPCNKCGGTGRI 224 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec------------cCCCCCCCCCcEE
Confidence 4678999999985 3699999999962 1359999999986
No 65
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0042 Score=54.35 Aligned_cols=51 Identities=24% Similarity=0.538 Sum_probs=42.9
Q ss_pred ccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceeeCCCCC
Q 031467 89 VSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCK 143 (159)
Q Consensus 89 ~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~C~~C~ 143 (159)
-.|..|.|.+-+.|..|+|+-++..+.. ......+|+.|+=-|.+.|+.|.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~~~~----~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHEEEE----DDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeeeecc----CCCcEEECcccCCCCceeCCccC
Confidence 6799999999999999999998866311 11456899999999999999995
No 66
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.44 E-value=0.0024 Score=57.08 Aligned_cols=39 Identities=28% Similarity=0.810 Sum_probs=32.4
Q ss_pred CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
.+..|..|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 231 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV------------KDRCPACYGEGIK 231 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee------------CCCCCCCCCCccE
Confidence 5678999999995 3699999999962 1359999999986
No 67
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.39 E-value=0.0022 Score=56.00 Aligned_cols=39 Identities=38% Similarity=0.980 Sum_probs=32.3
Q ss_pred CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
....|..|+|+|. .+|+.|+|+|++. ...|+.|.|+|.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII------------KEPCSTCKGKGRV 212 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec------------CCCCCCCCCCcEe
Confidence 4678999999994 4799999999962 1359999999986
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.39 E-value=0.0029 Score=56.03 Aligned_cols=41 Identities=37% Similarity=0.727 Sum_probs=32.1
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~ 149 (159)
+.|+.|+|+|.... ....+|+.|.|+|.+ +|++|+|.|++.
T Consensus 147 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 202 (378)
T PRK14283 147 KKCPVCNGSRAEPG---------SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV 202 (378)
T ss_pred ccCCCCCccccCCC---------CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence 56999999997321 234679999999885 599999999884
No 69
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0029 Score=57.04 Aligned_cols=34 Identities=35% Similarity=0.955 Sum_probs=21.5
Q ss_pred cCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceee
Q 031467 90 SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVC 138 (159)
Q Consensus 90 ~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~ 138 (159)
.|.-|+|+|..+|+.|.|.| ..+|..|.|+|++.
T Consensus 236 ~C~~C~G~G~~~C~tC~grG---------------~k~C~TC~gtgsll 269 (406)
T KOG2813|consen 236 LCYMCHGRGIKECHTCKGRG---------------KKPCTTCSGTGSLL 269 (406)
T ss_pred hhhhccCCCcccCCcccCCC---------------CcccccccCcccee
Confidence 44444444444555555444 46899999999873
No 70
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.03 E-value=0.0045 Score=54.55 Aligned_cols=38 Identities=34% Similarity=1.021 Sum_probs=31.4
Q ss_pred CccCCCCCCCCcc---------------cCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 88 PVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 88 ~~~C~~C~GsG~~---------------~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
...|..|+|+|.+ +|+.|+|+|+.. ...|+.|.|+|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII------------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec------------CCCCCCCCCceEE
Confidence 6789999999953 599999999852 2469999999976
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.67 E-value=0.0074 Score=49.86 Aligned_cols=28 Identities=39% Similarity=0.865 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCcc-----cCCCCCcccEEeec
Q 031467 87 RPVSCSSCNSNGHI-----DCKWCAGTGFFILG 114 (159)
Q Consensus 87 r~~~C~~C~GsG~~-----~C~~C~GtG~i~~~ 114 (159)
+...|+.|+|+|.+ .|+.|+|+|++...
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 47889999999963 49999999998643
No 72
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0055 Score=53.06 Aligned_cols=60 Identities=30% Similarity=0.624 Sum_probs=45.8
Q ss_pred CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA 149 (159)
Q Consensus 86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~ 149 (159)
.....|..|.|.|. ..|..|.|+|.+..-..... .. .+|..|.|.|.+ .|..|.|.|.|.
T Consensus 162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---~~-~~~~~c~~~~~~~~~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPF---IL-YTCSYCLGRGLVLRDNCQACSGAGQVR 230 (288)
T ss_pred EeecccccccCcCcccccccccchhhhCcccccccccCCc---ce-eecccccccceeccchHHHhhcchhhh
Confidence 45679999999997 46999999997643222111 11 289999999998 699999999765
No 73
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=91.40 E-value=0.077 Score=45.60 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=20.7
Q ss_pred ceEcCCCCccceeeCCCCCceeEEeeccC
Q 031467 125 NTTCVICAGKGSVCCSDCKGTGFRAKWLG 153 (159)
Q Consensus 125 ~~tCp~C~G~G~i~C~~C~GtG~v~kwl~ 153 (159)
..++..-.|++.++||+|+|+|+|.+=++
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eqe 55 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQE 55 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccch
Confidence 34566777778888888888888776443
No 74
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.27 Score=44.11 Aligned_cols=41 Identities=32% Similarity=0.755 Sum_probs=25.9
Q ss_pred CCccCCCCCCCCc----------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 87 RPVSCSSCNSNGH----------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 87 r~~~C~~C~GsG~----------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
...+|..|.|+|. .+|..|+|+|... .....|+.|.|++.+
T Consensus 142 ~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~----------~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 142 SAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI----------SLKDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc----------cccccCcccccchhh
Confidence 3446778887773 3577777777641 122357777777765
No 75
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.71 E-value=0.4 Score=47.86 Aligned_cols=33 Identities=27% Similarity=0.640 Sum_probs=19.5
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCccce
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS 136 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~ 136 (159)
.|+.|.|.|++...-+++.. ...+|+.|+|+..
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~---~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPD---VYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCCCC---cccCCCCcCCcee
Confidence 48888888888765444322 2345555555543
No 76
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=84.93 E-value=0.46 Score=40.91 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.1
Q ss_pred CccCCCCCCCCcccCCCCCcccEEee
Q 031467 88 PVSCSSCNSNGHIDCKWCAGTGFFIL 113 (159)
Q Consensus 88 ~~~C~~C~GsG~~~C~~C~GtG~i~~ 113 (159)
..++.+-.|.+.++||.|+|+|+|--
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCc
Confidence 35777888999999999999999943
No 77
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=84.14 E-value=0.79 Score=45.93 Aligned_cols=32 Identities=31% Similarity=0.731 Sum_probs=21.8
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCccc
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG 135 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G 135 (159)
+|..|.|.|.+.+.-+++.++ ..+|+.|+|+-
T Consensus 732 RCe~C~GdG~ikIeM~FLpdV---yv~CevC~GkR 763 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDV---YVPCEVCHGKR 763 (935)
T ss_pred CCccccCCceEEEEeccCCCc---eeeCCCcCCcc
Confidence 688888888887776665443 46677777653
No 78
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=82.37 E-value=0.93 Score=45.41 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=17.6
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCccc
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG 135 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G 135 (159)
.|+.|.|.|++...-+++.. ...+|+.|+|+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~---~~~~C~~C~G~R 771 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPD---VYVPCDVCKGKR 771 (943)
T ss_pred CCCcccccceEEEEeccCCC---ccccCccccCcc
Confidence 48888888877655443222 224455555544
No 79
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=81.95 E-value=0.95 Score=48.33 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=21.8
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCccce
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS 136 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~ 136 (159)
.|+.|.|.|++.+.-+++.. -.++|+.|+|+..
T Consensus 1609 rC~~C~G~G~i~i~m~fl~d---v~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYAL---EKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecccCCC---cccCCCCCCCcCC
Confidence 58888888888766554332 3466777777654
No 80
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.81 E-value=0.93 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.860 Sum_probs=22.3
Q ss_pred ceEcCCCCcccee------------eCCCCCceeEEee
Q 031467 125 NTTCVICAGKGSV------------CCSDCKGTGFRAK 150 (159)
Q Consensus 125 ~~tCp~C~G~G~i------------~C~~C~GtG~v~k 150 (159)
...|+.|.|.|.+ +|+.|+|+.|-..
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 4669999999987 8999999998654
No 81
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=78.53 E-value=1.7 Score=34.39 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=6.5
Q ss_pred ccCCCCCcccE
Q 031467 100 IDCKWCAGTGF 110 (159)
Q Consensus 100 ~~C~~C~GtG~ 110 (159)
..|..|.|.++
T Consensus 100 ~~C~~Cgg~rf 110 (147)
T cd03031 100 GVCEGCGGARF 110 (147)
T ss_pred CCCCCCCCcCe
Confidence 34666666655
No 82
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=74.38 E-value=1.6 Score=43.80 Aligned_cols=26 Identities=31% Similarity=0.864 Sum_probs=22.1
Q ss_pred ceEcCCCCcccee------------eCCCCCceeEEee
Q 031467 125 NTTCVICAGKGSV------------CCSDCKGTGFRAK 150 (159)
Q Consensus 125 ~~tCp~C~G~G~i------------~C~~C~GtG~v~k 150 (159)
...|+.|.|.|.+ +|+.|+|+.+-..
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 4579999999987 7999999988654
No 83
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.89 E-value=3.2 Score=36.64 Aligned_cols=25 Identities=28% Similarity=0.654 Sum_probs=18.2
Q ss_pred eEcCCCCccceeeCCCCCceeEEee
Q 031467 126 TTCVICAGKGSVCCSDCKGTGFRAK 150 (159)
Q Consensus 126 ~tCp~C~G~G~i~C~~C~GtG~v~k 150 (159)
..|..|.|.+.++|..|+|+-++..
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~ 254 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHE 254 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeee
Confidence 5677777777777777777766653
No 84
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=70.73 E-value=2.4 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=17.6
Q ss_pred ceEcCCCCcccee------------eCCCCCceeEEe
Q 031467 125 NTTCVICAGKGSV------------CCSDCKGTGFRA 149 (159)
Q Consensus 125 ~~tCp~C~G~G~i------------~C~~C~GtG~v~ 149 (159)
.-.|+.|+|.|.+ +|+.|+|+.|-.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~ 1643 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQP 1643 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCH
Confidence 3557888887775 777887777643
No 85
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=64.88 E-value=8.5 Score=25.13 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=9.3
Q ss_pred ccCCCCCcccE
Q 031467 100 IDCKWCAGTGF 110 (159)
Q Consensus 100 ~~C~~C~GtG~ 110 (159)
+.||.|+|...
T Consensus 2 kPCPfCGg~~~ 12 (53)
T TIGR03655 2 KPCPFCGGADV 12 (53)
T ss_pred CCCCCCCCcce
Confidence 47999999887
No 86
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=64.10 E-value=7 Score=32.75 Aligned_cols=28 Identities=32% Similarity=0.711 Sum_probs=19.8
Q ss_pred cCCCCCccCCCCCCCCc--ccCC-----CCCcccE
Q 031467 83 SQQPRPVSCSSCNSNGH--IDCK-----WCAGTGF 110 (159)
Q Consensus 83 ~~~~r~~~C~~C~GsG~--~~C~-----~C~GtG~ 110 (159)
..+.....|..|...|+ ..|+ .|+=.|.
T Consensus 55 ~~~~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H 89 (190)
T COG5082 55 AIREENPVCFNCGQNGHLRRDCPHSICYNCSWDGH 89 (190)
T ss_pred cccccccccchhcccCcccccCChhHhhhcCCCCc
Confidence 45566778999999997 4576 7744544
No 87
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=56.31 E-value=5 Score=32.94 Aligned_cols=49 Identities=22% Similarity=0.611 Sum_probs=32.4
Q ss_pred CCccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccce------eeCCCC
Q 031467 87 RPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS------VCCSDC 142 (159)
Q Consensus 87 r~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~------i~C~~C 142 (159)
....|..|.+.| -.|..|+....+.. ++. .....|+.|..-=- ..||.|
T Consensus 141 HV~~C~lC~~kG-fiCe~C~~~~~IfP-----F~~-~~~~~C~~C~~v~H~~C~~~~~CpkC 195 (202)
T PF13901_consen 141 HVYSCELCQQKG-FICEICNSDDIIFP-----FQI-DTTVRCPKCKSVFHKSCFRKKSCPKC 195 (202)
T ss_pred HHHHhHHHHhCC-CCCccCCCCCCCCC-----CCC-CCeeeCCcCccccchhhcCCCCCCCc
Confidence 455999999999 58999988755421 122 35677887764211 367777
No 88
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=56.08 E-value=39 Score=33.43 Aligned_cols=65 Identities=14% Similarity=0.424 Sum_probs=43.5
Q ss_pred hHHHHHHHHhhhcCC----------CCCccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--e
Q 031467 71 NFVKRMEQAWLISQQ----------PRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--C 138 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----------~r~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--~ 138 (159)
.+-.+|+..++...| -....|..|.=. ..|+.|...=..+.. .+...|..|+-...+ .
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v--~~Cp~Cd~~lt~H~~--------~~~L~CH~Cg~~~~~p~~ 477 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYI--AECPNCDSPLTLHKA--------TGQLRCHYCGYQEPIPQS 477 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCc--ccCCCCCcceEEecC--------CCeeEeCCCCCCCCCCCC
Confidence 444455566666555 135689999554 689999987332222 355678889887665 8
Q ss_pred CCCCCce
Q 031467 139 CSDCKGT 145 (159)
Q Consensus 139 C~~C~Gt 145 (159)
|+.|+++
T Consensus 478 Cp~Cgs~ 484 (730)
T COG1198 478 CPECGSE 484 (730)
T ss_pred CCCCCCC
Confidence 9999776
No 89
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.18 E-value=6.8 Score=34.06 Aligned_cols=10 Identities=50% Similarity=1.109 Sum_probs=4.9
Q ss_pred CCCCCceeEE
Q 031467 139 CSDCKGTGFR 148 (159)
Q Consensus 139 C~~C~GtG~v 148 (159)
|..|.|.|.+
T Consensus 206 ~~~c~~~~~~ 215 (288)
T KOG0715|consen 206 CSYCLGRGLV 215 (288)
T ss_pred ccccccccee
Confidence 5555554444
No 90
>PF14353 CpXC: CpXC protein
Probab=55.05 E-value=13 Score=27.72 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=23.5
Q ss_pred ccCCCCCcccEEeecccc-----------cccCCCCceEcCCCCcccee
Q 031467 100 IDCKWCAGTGFFILGDNM-----------LCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~-----------~~~~~~~~~tCp~C~G~G~i 137 (159)
++||.|+..+.+.+-... .-++.-...+||.|+.++.+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 589999999877532110 11222345788888877765
No 91
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=52.70 E-value=13 Score=22.84 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=8.3
Q ss_pred ccCCCCCcccEE
Q 031467 100 IDCKWCAGTGFF 111 (159)
Q Consensus 100 ~~C~~C~GtG~i 111 (159)
++||.|+..-.+
T Consensus 3 i~CP~C~~~f~v 14 (37)
T PF13719_consen 3 ITCPNCQTRFRV 14 (37)
T ss_pred EECCCCCceEEc
Confidence 578888777554
No 92
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=52.43 E-value=8.5 Score=38.92 Aligned_cols=23 Identities=30% Similarity=0.920 Sum_probs=12.6
Q ss_pred eEcCCCCcccee------------eCCCCCceeEE
Q 031467 126 TTCVICAGKGSV------------CCSDCKGTGFR 148 (159)
Q Consensus 126 ~tCp~C~G~G~i------------~C~~C~GtG~v 148 (159)
-+|..|+|.|.+ +|+.|+|+-|-
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 345555555554 55555555443
No 93
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=51.78 E-value=18 Score=21.61 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=7.8
Q ss_pred ccCCCCCcccEE
Q 031467 100 IDCKWCAGTGFF 111 (159)
Q Consensus 100 ~~C~~C~GtG~i 111 (159)
++|+.|+-.=++
T Consensus 3 ~~CP~C~~~~~v 14 (38)
T TIGR02098 3 IQCPNCKTSFRV 14 (38)
T ss_pred EECCCCCCEEEe
Confidence 467888776443
No 94
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=51.58 E-value=8.4 Score=34.66 Aligned_cols=20 Identities=55% Similarity=1.325 Sum_probs=12.5
Q ss_pred eEcCCCCccceeeCCCCCceeEE
Q 031467 126 TTCVICAGKGSVCCSDCKGTGFR 148 (159)
Q Consensus 126 ~tCp~C~G~G~i~C~~C~GtG~v 148 (159)
..|+.|.|+| |+.|+++|++
T Consensus 261 v~~~~~~g~g---c~~ck~~~Wi 280 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWL 280 (339)
T ss_pred EEEeccCCCc---ccccCCCCce
Confidence 4566666655 6666666643
No 95
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=50.10 E-value=6.8 Score=29.01 Aligned_cols=10 Identities=50% Similarity=1.262 Sum_probs=4.7
Q ss_pred cCCCCCcccE
Q 031467 101 DCKWCAGTGF 110 (159)
Q Consensus 101 ~C~~C~GtG~ 110 (159)
.|..|+|.|.
T Consensus 7 ~c~~c~g~g~ 16 (95)
T PF03589_consen 7 SCRRCAGDGA 16 (95)
T ss_pred CcCccCCcce
Confidence 3445555553
No 96
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=50.07 E-value=13 Score=23.77 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=14.2
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCc
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAG 133 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G 133 (159)
..||.|.|+.+.++-+... . .+..-|..|.+
T Consensus 4 ~pCP~CGG~DrFri~~d~~--~-~G~~~C~~C~~ 34 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDDKD--G-RGTWICRQCGG 34 (40)
T ss_dssp E--TTTT-TTTEEEETT-------S-EEETTTTB
T ss_pred CCCCCCcCccccccCcCcc--c-CCCEECCCCCC
Confidence 4799999998877322210 1 23455666643
No 97
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=48.94 E-value=5.8 Score=36.13 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHhhhcCCCCCccCCCCCCCCcccCCC
Q 031467 77 EQAWLISQQPRPVSCSSCNSNGHIDCKW 104 (159)
Q Consensus 77 e~aw~i~~~~r~~~C~~C~GsG~~~C~~ 104 (159)
++.|++--+.-+-.|+.|++-=...|..
T Consensus 263 Dqv~k~~~~~i~LkCplc~~Llrnp~kT 290 (427)
T COG5222 263 DQVYKMQPPNISLKCPLCHCLLRNPMKT 290 (427)
T ss_pred hhhhccCCCCccccCcchhhhhhCcccC
Confidence 4689888888889999999876655554
No 98
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=45.30 E-value=19 Score=33.77 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=32.9
Q ss_pred hHHHHHHHHhhhcCCCCCccCCCCCCC--------------CcccCCCCCcc
Q 031467 71 NFVKRMEQAWLISQQPRPVSCSSCNSN--------------GHIDCKWCAGT 108 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~~r~~~C~~C~Gs--------------G~~~C~~C~Gt 108 (159)
++.++||....-+....-+.|+.|.-+ |.-.|..|+|.
T Consensus 111 ~m~krled~~~d~t~~~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 111 QMRKRLEDRLRDDTNVAGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGE 162 (436)
T ss_pred HHHHHHHHHhhhccccccccCCccccchhhhHHHHhhcccCceEEEecCCCc
Confidence 788889988888888889999999987 66789999886
No 99
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.63 E-value=24 Score=36.49 Aligned_cols=51 Identities=20% Similarity=0.449 Sum_probs=35.2
Q ss_pred hcCCCCCccCCCCCCCCc-ccCCCCCcccEEeecccccccCCCCceEcCCCCccce-eeCCCCCce
Q 031467 82 ISQQPRPVSCSSCNSNGH-IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS-VCCSDCKGT 145 (159)
Q Consensus 82 i~~~~r~~~C~~C~GsG~-~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~-i~C~~C~Gt 145 (159)
++.+.-...|++|.-.+. ..|+.|+.. . .....|+.|.-.+. ..|+.|+-.
T Consensus 620 ~eVEVg~RfCpsCG~~t~~frCP~CG~~-----T--------e~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 620 IEVEIGRRKCPSCGKETFYRRCPFCGTH-----T--------EPVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred eeecccCccCCCCCCcCCcccCCCCCCC-----C--------CcceeCccccCcCCCCcCCCCCCC
Confidence 334455678999987764 689999887 1 12346999966554 389999654
No 100
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=44.61 E-value=34 Score=23.82 Aligned_cols=43 Identities=26% Similarity=0.699 Sum_probs=23.1
Q ss_pred CCCccCCCCCCC------Cc-ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-eCCCCC
Q 031467 86 PRPVSCSSCNSN------GH-IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-CCSDCK 143 (159)
Q Consensus 86 ~r~~~C~~C~Gs------G~-~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-~C~~C~ 143 (159)
..+..|.+|+.. +. -.|+.|+ . ..+ .+|..|.-.|.. .|+.|+
T Consensus 5 ~~~~~CtSCg~~i~~~~~~~~F~CPnCG-~--~~I------------~RC~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 5 MEPPKCTSCGIEIAPREKAVKFLCPNCG-E--VII------------YRCEKCRKQSNPYTCPKCG 55 (59)
T ss_pred ccCccccCCCCcccCCCccCEeeCCCCC-C--eeE------------eechhHHhcCCceECCCCC
Confidence 345578888732 22 3588882 2 212 345555555554 666663
No 101
>PF14369 zf-RING_3: zinc-finger
Probab=41.76 E-value=24 Score=21.64 Aligned_cols=6 Identities=50% Similarity=1.364 Sum_probs=2.8
Q ss_pred cCCCCc
Q 031467 128 CVICAG 133 (159)
Q Consensus 128 Cp~C~G 133 (159)
||.|+|
T Consensus 24 CP~C~~ 29 (35)
T PF14369_consen 24 CPRCHG 29 (35)
T ss_pred CcCCCC
Confidence 444443
No 102
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.47 E-value=28 Score=32.29 Aligned_cols=48 Identities=19% Similarity=0.497 Sum_probs=33.3
Q ss_pred CccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--eCCCCCce
Q 031467 88 PVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--CCSDCKGT 145 (159)
Q Consensus 88 ~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--~C~~C~Gt 145 (159)
...|..|.-. ..|+.|.+.=..+.. .+...|..|+-+=.+ .|+.|++.
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTYHKK--------EGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEEecC--------CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 4579999665 689999876333222 334678888876655 79999765
No 103
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=40.57 E-value=34 Score=26.14 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=7.1
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
.|-.|...|+++
T Consensus 105 ~C~~Cg~~gH~~ 116 (148)
T PTZ00368 105 ACYNCGGEGHIS 116 (148)
T ss_pred hhcccCcCCcch
Confidence 466666666654
No 104
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=40.37 E-value=34 Score=20.82 Aligned_cols=12 Identities=33% Similarity=0.925 Sum_probs=7.9
Q ss_pred ccCCCCCcccEE
Q 031467 100 IDCKWCAGTGFF 111 (159)
Q Consensus 100 ~~C~~C~GtG~i 111 (159)
..|..|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 356777777765
No 105
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=38.14 E-value=35 Score=22.20 Aligned_cols=15 Identities=20% Similarity=0.731 Sum_probs=10.2
Q ss_pred ccCCCCCcccEEeecc
Q 031467 100 IDCKWCAGTGFFILGD 115 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~ 115 (159)
+.||+| |...+....
T Consensus 4 kPCPFC-G~~~~~~~~ 18 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQ 18 (61)
T ss_pred cCCCCC-CCcceEeec
Confidence 469999 776665543
No 106
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=36.38 E-value=25 Score=27.98 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=8.2
Q ss_pred CCCcccCCCCCcc
Q 031467 96 SNGHIDCKWCAGT 108 (159)
Q Consensus 96 GsG~~~C~~C~Gt 108 (159)
|.|.-+|..|+-.
T Consensus 109 g~G~l~C~~Cg~~ 121 (146)
T PF07295_consen 109 GPGTLVCENCGHE 121 (146)
T ss_pred cCceEecccCCCE
Confidence 4555677777654
No 107
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=36.23 E-value=18 Score=33.06 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=6.2
Q ss_pred eCCCCCceeEEe
Q 031467 138 CCSDCKGTGFRA 149 (159)
Q Consensus 138 ~C~~C~GtG~v~ 149 (159)
+|+.|+|+|++.
T Consensus 392 ~Cp~C~G~G~v~ 403 (414)
T TIGR00757 392 VCPHCSGTGIVK 403 (414)
T ss_pred CCCCCcCeeEEc
Confidence 455555555554
No 108
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=34.92 E-value=33 Score=33.36 Aligned_cols=42 Identities=21% Similarity=0.657 Sum_probs=28.0
Q ss_pred ccCCCCCC---CCcccCCCCCcccEEeecccccccCCCCceEcCCCCcc---ceeeCCCCCc
Q 031467 89 VSCSSCNS---NGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK---GSVCCSDCKG 144 (159)
Q Consensus 89 ~~C~~C~G---sG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~---G~i~C~~C~G 144 (159)
..|+.|+- .|++-|+.|+..- ....|+.|+-. |...|+.|+-
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l--------------~~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSL--------------THKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCC--------------CCCcCCCCCCCCCcccccccccCC
Confidence 46888864 4567899994431 11358888754 5558999943
No 109
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=34.87 E-value=39 Score=21.21 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=11.4
Q ss_pred ccCCCCCcccEEeecc
Q 031467 100 IDCKWCAGTGFFILGD 115 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~ 115 (159)
..||.|.|+.+.+..+
T Consensus 4 ~pCP~CGG~DrFr~~d 19 (37)
T smart00778 4 GPCPNCGGSDRFRFDD 19 (37)
T ss_pred cCCCCCCCcccccccc
Confidence 5788888887766433
No 110
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.81 E-value=30 Score=31.73 Aligned_cols=38 Identities=29% Similarity=0.593 Sum_probs=23.8
Q ss_pred CCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCC-ccce
Q 031467 94 CNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICA-GKGS 136 (159)
Q Consensus 94 C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~-G~G~ 136 (159)
|++.|+ .|+.|.|.++++..++-. .+..-|..|. |-|.
T Consensus 28 ~~~~~~-~cpvcg~k~RFr~dD~kG----rGtw~c~y~~~GDGl 66 (366)
T COG4643 28 LKPGGH-PCPVCGGKDRFRFDDRKG----RGTWFCNYCGHGDGL 66 (366)
T ss_pred ccCCCC-CCCccCCccccccCCccC----CccEEEEeeccCCCc
Confidence 344444 888888888887766531 3445566666 5554
No 111
>PRK00420 hypothetical protein; Validated
Probab=33.51 E-value=47 Score=25.55 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=18.1
Q ss_pred chHHHHHHHHhhhcCCCCCccCCCCCC------CCcccCCCCCc
Q 031467 70 SNFVKRMEQAWLISQQPRPVSCSSCNS------NGHIDCKWCAG 107 (159)
Q Consensus 70 ~~~~~~~e~aw~i~~~~r~~~C~~C~G------sG~~~C~~C~G 107 (159)
+.+++.|..=|.+ -...|+.|.. .|...|+.|+-
T Consensus 9 k~~a~~Ll~Ga~m----l~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 9 KKAAELLLKGAKM----LSKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred HHHHHHHHhHHHH----ccCCCCCCCCcceecCCCceECCCCCC
Confidence 4455555555555 2356666654 34455666654
No 112
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.38 E-value=38 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=17.0
Q ss_pred CceEcCCCCcccee-------eCCCCCceeEEee
Q 031467 124 RNTTCVICAGKGSV-------CCSDCKGTGFRAK 150 (159)
Q Consensus 124 ~~~tCp~C~G~G~i-------~C~~C~GtG~v~k 150 (159)
+.-.|..|+-.=.+ +|+.|+++.|.+.
T Consensus 111 G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 111 GTLVCENCGHEVELTHPERLPPCPKCGHTEFTRQ 144 (146)
T ss_pred ceEecccCCCEEEecCCCcCCCCCCCCCCeeeeC
Confidence 34567777643222 7888888877763
No 113
>PRK05580 primosome assembly protein PriA; Validated
Probab=32.12 E-value=59 Score=31.35 Aligned_cols=48 Identities=21% Similarity=0.533 Sum_probs=33.9
Q ss_pred CccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--eCCCCCce
Q 031467 88 PVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--CCSDCKGT 145 (159)
Q Consensus 88 ~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--~C~~C~Gt 145 (159)
...|..|.-. ..|+.|.+.=..+.. .+...|..|+-+-.+ .|+.|++.
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHRF--------QRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEECC--------CCeEECCCCcCCCCCCCCCCCCcCC
Confidence 5689999765 689999985222211 345679999877655 89999775
No 114
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.04 E-value=53 Score=29.26 Aligned_cols=63 Identities=19% Similarity=0.482 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhcCCCCCccCCCCCCC------------Cc--ccCCCCCcccEEeecccccccCCCCceEcCCCCccce
Q 031467 71 NFVKRMEQAWLISQQPRPVSCSSCNSN------------GH--IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS 136 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~~r~~~C~~C~Gs------------G~--~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~ 136 (159)
+++..++....+......-.|+-|.+. |. -.|..|+-.=. ..+..|+.|.-.+.
T Consensus 170 ~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~------------~~R~~C~~Cg~~~~ 237 (309)
T PRK03564 170 QMAQQIPGKARAEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH------------VVRVKCSNCEQSGK 237 (309)
T ss_pred HHHhhCCcccccccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc------------ccCccCCCCCCCCc
Q ss_pred e---------------eCCCCCce
Q 031467 137 V---------------CCSDCKGT 145 (159)
Q Consensus 137 i---------------~C~~C~Gt 145 (159)
+ .|.+|+++
T Consensus 238 l~y~~~~~~~~~~r~e~C~~C~~Y 261 (309)
T PRK03564 238 LHYWSLDSEQAAVKAESCGDCGTY 261 (309)
T ss_pred eeeeeecCCCcceEeeeccccccc
No 115
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=29.47 E-value=27 Score=31.45 Aligned_cols=23 Identities=43% Similarity=1.122 Sum_probs=19.7
Q ss_pred CccCCCCCCCCcccCCCCCcccEEee
Q 031467 88 PVSCSSCNSNGHIDCKWCAGTGFFIL 113 (159)
Q Consensus 88 ~~~C~~C~GsG~~~C~~C~GtG~i~~ 113 (159)
.+.|..|+|.| |+.|+++|++.+
T Consensus 260 dv~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEEEeccCCCc---ccccCCCCceEE
Confidence 46899999887 999999999864
No 116
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=28.97 E-value=39 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.805 Sum_probs=12.4
Q ss_pred eEcCCCCccceeeCCCCC
Q 031467 126 TTCVICAGKGSVCCSDCK 143 (159)
Q Consensus 126 ~tCp~C~G~G~i~C~~C~ 143 (159)
..|..|...++-.|+.|+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EEETSSSSEESEE-TTT-
T ss_pred CCCccCcCCCEEECCCcC
Confidence 467888887777888884
No 117
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=28.89 E-value=29 Score=31.79 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=10.6
Q ss_pred ccCCCCCcccEEee
Q 031467 100 IDCKWCAGTGFFIL 113 (159)
Q Consensus 100 ~~C~~C~GtG~i~~ 113 (159)
..|+.|+|+|++..
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 46888888888753
No 118
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.88 E-value=59 Score=34.45 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=30.0
Q ss_pred ccCCCCCCCCc-ccCCCCCcccEEeecccccccCCCCceEcCCCCcc------ceeeCCCCCce
Q 031467 89 VSCSSCNSNGH-IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK------GSVCCSDCKGT 145 (159)
Q Consensus 89 ~~C~~C~GsG~-~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~------G~i~C~~C~Gt 145 (159)
..|+.|..... ..|+.|+..= .....|+.|+.. |...|+.|+-.
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~t-------------e~vy~CPsCGaev~~des~a~~CP~CGtp 718 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHT-------------EPVYVCPDCGAEVPPDESGRVECPRCDVE 718 (1337)
T ss_pred EECCCCCCccccccCcccCCcC-------------CCceeCccCCCccCCCccccccCCCCCCc
Confidence 68999987543 5899998772 112479999873 23479999643
No 119
>PRK11032 hypothetical protein; Provisional
Probab=26.86 E-value=43 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=7.9
Q ss_pred eCCCCCceeEEee
Q 031467 138 CCSDCKGTGFRAK 150 (159)
Q Consensus 138 ~C~~C~GtG~v~k 150 (159)
+|+.|+++.|.+.
T Consensus 144 pCp~C~~~~F~R~ 156 (160)
T PRK11032 144 LCPKCGHDQFQRR 156 (160)
T ss_pred CCCCCCCCeeeeC
Confidence 5666666666553
No 120
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.36 E-value=59 Score=31.63 Aligned_cols=49 Identities=18% Similarity=0.565 Sum_probs=32.2
Q ss_pred CccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccce-eeCCCCCcee
Q 031467 88 PVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS-VCCSDCKGTG 146 (159)
Q Consensus 88 ~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~-i~C~~C~GtG 146 (159)
...|..|.=. ..|+.|.+.=..+.. .+...|..|+-.-. ..|+.|++.-
T Consensus 383 ~l~C~~Cg~~--~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 383 SLACARCRTP--ARCRHCTGPLGLPSA--------GGTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eeEhhhCcCe--eECCCCCCceeEecC--------CCeeECCCCcCCCcCccCCCCcCCc
Confidence 4589999655 789999987443222 23457888875431 1788887653
No 121
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.16 E-value=72 Score=28.33 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=24.4
Q ss_pred CcccCCCCCcccEE---eecccccccCCCCceEcCCCCcccee---eCCCCCceeEEeec
Q 031467 98 GHIDCKWCAGTGFF---ILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRAKW 151 (159)
Q Consensus 98 G~~~C~~C~GtG~i---~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~kw 151 (159)
+...||.|++.-.. +.+... .+ .+.-.|+.|.-.=.. .|+.|.-+..+.-|
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~--~G-~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~ 239 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKE--TG-LRYLSCSLCATEWHYVRVKCSHCEESKHLAYL 239 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCC--CC-ceEEEcCCCCCcccccCccCCCCCCCCceeeE
Confidence 34588888887543 221100 01 234455555544332 55555544444434
No 122
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=25.74 E-value=43 Score=25.00 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=17.3
Q ss_pred hhhcCCCCCccCCCCCCCCc-----ccCCCCCcccE
Q 031467 80 WLISQQPRPVSCSSCNSNGH-----IDCKWCAGTGF 110 (159)
Q Consensus 80 w~i~~~~r~~~C~~C~GsG~-----~~C~~C~GtG~ 110 (159)
+.|...+-...|..|.-... ..||.|++...
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred EEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 44444466677888877765 35888888764
No 123
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=24.87 E-value=53 Score=20.18 Aligned_cols=6 Identities=33% Similarity=1.121 Sum_probs=3.6
Q ss_pred CCCCCc
Q 031467 102 CKWCAG 107 (159)
Q Consensus 102 C~~C~G 107 (159)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 666654
No 124
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=24.64 E-value=88 Score=19.32 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=6.1
Q ss_pred cCCCCCccc
Q 031467 101 DCKWCAGTG 109 (159)
Q Consensus 101 ~C~~C~GtG 109 (159)
.||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 477777765
No 125
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.02 E-value=69 Score=29.75 Aligned_cols=37 Identities=22% Similarity=0.653 Sum_probs=26.2
Q ss_pred CCCccCCCCCC-------CCcccCCCCCcccEEeecccccccCCCCceEcCCCCccc
Q 031467 86 PRPVSCSSCNS-------NGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG 135 (159)
Q Consensus 86 ~r~~~C~~C~G-------sG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G 135 (159)
.....|+.|.+ .+...|.+|+-+=. -...||.|++.-
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~-------------~~~~Cp~C~s~~ 263 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEP-------------IPKTCPQCGSED 263 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCC-------------CCCCCCCCCCCe
Confidence 78899999984 34467999975411 235799998753
No 126
>PRK11032 hypothetical protein; Provisional
Probab=23.37 E-value=69 Score=26.05 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=21.2
Q ss_pred CCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccce
Q 031467 96 SNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS 136 (159)
Q Consensus 96 GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~ 136 (159)
|-|.-+|..|+=.=.+.. +....+||.|++...
T Consensus 121 g~G~LvC~~Cg~~~~~~~--------p~~i~pCp~C~~~~F 153 (160)
T PRK11032 121 GLGNLVCEKCHHHLAFYT--------PEVLPLCPKCGHDQF 153 (160)
T ss_pred ecceEEecCCCCEEEecC--------CCcCCCCCCCCCCee
Confidence 556678999976533322 234468999998754
No 127
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.83 E-value=68 Score=19.56 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=7.2
Q ss_pred ccCCCCCcccE
Q 031467 100 IDCKWCAGTGF 110 (159)
Q Consensus 100 ~~C~~C~GtG~ 110 (159)
++|+.|+-.=.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 46788876633
No 128
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.68 E-value=90 Score=23.43 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=16.9
Q ss_pred hhhcCCCCCccCCCCCCCCc-----ccCCCCCccc
Q 031467 80 WLISQQPRPVSCSSCNSNGH-----IDCKWCAGTG 109 (159)
Q Consensus 80 w~i~~~~r~~~C~~C~GsG~-----~~C~~C~GtG 109 (159)
+.|...+-...|..|..... ..||.|++..
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEEeeCcEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 44444456666777765443 2366666554
No 129
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.42 E-value=66 Score=32.59 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=32.8
Q ss_pred cccCCCCCcccEEeeccc-c-cccCCCCceEcCCCCcc--cee----eCCCCCceeEEeeccCCCCC
Q 031467 99 HIDCKWCAGTGFFILGDN-M-LCQVPSRNTTCVICAGK--GSV----CCSDCKGTGFRAKWLGEPPI 157 (159)
Q Consensus 99 ~~~C~~C~GtG~i~~~~~-~-~~~~~~~~~tCp~C~G~--G~i----~C~~C~GtG~v~kwl~~~~~ 157 (159)
.-+||.||-. ..++. . -|....-+.+|..|.-. |.. +||.|.|+ ..||+.--+
T Consensus 796 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 856 (1006)
T PRK12775 796 VATCPKCHRP---LEGDEEYVCCATSELQWRCDDCGKVSEGFAFPYGMCPACGGK---LQALDRRKV 856 (1006)
T ss_pred CccCcccCCC---CCCCceeEEecCcceeeehhhhccccccccCCcCcCcccccc---hhhhhccCc
Confidence 3578888854 22222 2 23333456789999643 222 89999888 778886544
No 130
>PRK06921 hypothetical protein; Provisional
Probab=22.26 E-value=47 Score=28.11 Aligned_cols=10 Identities=40% Similarity=1.023 Sum_probs=5.5
Q ss_pred cCCCCCcccE
Q 031467 101 DCKWCAGTGF 110 (159)
Q Consensus 101 ~C~~C~GtG~ 110 (159)
.||.|+++|+
T Consensus 34 ~Cp~C~dtG~ 43 (266)
T PRK06921 34 DCPKCKDRGI 43 (266)
T ss_pred CCCCCCCCEE
Confidence 4555555554
No 131
>PRK12722 transcriptional activator FlhC; Provisional
Probab=22.19 E-value=53 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=14.6
Q ss_pred HHHHHHhhhcCCC-----CCccCCCCCCC
Q 031467 74 KRMEQAWLISQQP-----RPVSCSSCNSN 97 (159)
Q Consensus 74 ~~~e~aw~i~~~~-----r~~~C~~C~Gs 97 (159)
.-++.||.+..-- ....|..|.|.
T Consensus 115 Ls~tRAw~LvRf~~s~~L~l~~C~~Cgg~ 143 (187)
T PRK12722 115 LSLTRAWTLVRFVDSGMLQLSSCNCCGGH 143 (187)
T ss_pred ecHHHHHHHHHHHhcCcEeeccCCCCCCC
Confidence 3356888876653 34566666655
No 132
>PRK11712 ribonuclease G; Provisional
Probab=22.00 E-value=34 Score=32.18 Aligned_cols=12 Identities=42% Similarity=1.093 Sum_probs=6.6
Q ss_pred eEcCCCCcccee
Q 031467 126 TTCVICAGKGSV 137 (159)
Q Consensus 126 ~tCp~C~G~G~i 137 (159)
.+||.|+|+|.+
T Consensus 403 ~~Cp~C~G~G~v 414 (489)
T PRK11712 403 GECPTCHGRGTV 414 (489)
T ss_pred CCCCCCCCCCCc
Confidence 456665555543
No 133
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=21.42 E-value=85 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.840 Sum_probs=7.1
Q ss_pred ccceeeCCCC
Q 031467 133 GKGSVCCSDC 142 (159)
Q Consensus 133 G~G~i~C~~C 142 (159)
|.+.+.|+.|
T Consensus 39 ~~~h~~C~~C 48 (99)
T PRK14892 39 NIAIITCGNC 48 (99)
T ss_pred CcceEECCCC
Confidence 4566678888
No 134
>PRK05978 hypothetical protein; Provisional
Probab=21.24 E-value=47 Score=26.67 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=3.3
Q ss_pred eEcCCCC
Q 031467 126 TTCVICA 132 (159)
Q Consensus 126 ~tCp~C~ 132 (159)
..|+.|+
T Consensus 53 ~~C~~CG 59 (148)
T PRK05978 53 DHCAACG 59 (148)
T ss_pred CCccccC
Confidence 3455553
No 135
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.41 E-value=91 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=21.1
Q ss_pred CcccCCCCCcccEEeeccc-ccccCCCCceEcCCCCcc
Q 031467 98 GHIDCKWCAGTGFFILGDN-MLCQVPSRNTTCVICAGK 134 (159)
Q Consensus 98 G~~~C~~C~GtG~i~~~~~-~~~~~~~~~~tCp~C~G~ 134 (159)
.+..||.|++.-+..+... .+-++ ..-||.|.-.
T Consensus 3 ~Wi~CP~CgnKTR~kir~DT~LkNf---PlyCpKCK~E 37 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIREDTVLKNF---PLYCPKCKQE 37 (55)
T ss_pred eEEECCCCCCccceeeecCceeccc---cccCCCCCce
Confidence 4678999998887766544 22222 2347777654
Done!