Query 031467
Match_columns 159
No_of_seqs 135 out of 445
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 23:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.2 6.9E-12 2.4E-16 90.9 5.4 60 86-149 26-94 (104)
2 1exk_A DNAJ protein; extended 99.2 3.6E-12 1.2E-16 87.5 3.6 60 86-149 9-77 (79)
3 1nlt_A Protein YDJ1, mitochond 99.0 3.2E-11 1.1E-15 99.5 1.1 79 71-149 17-109 (248)
4 1exk_A DNAJ protein; extended 98.1 1.1E-06 3.8E-11 59.9 2.6 41 100-149 12-63 (79)
5 2ctt_A DNAJ homolog subfamily 97.8 1.4E-05 4.8E-10 57.5 4.0 42 99-149 28-80 (104)
6 3lcz_A YCZA, inhibitor of trap 97.6 3.7E-05 1.3E-09 50.7 3.1 25 125-149 9-36 (53)
7 2bx9_A Anti-trap, AT, tryptoph 97.3 0.00013 4.3E-09 48.1 3.1 24 126-149 10-36 (53)
8 1nlt_A Protein YDJ1, mitochond 97.3 0.00015 5.2E-09 59.5 3.8 40 88-137 54-108 (248)
9 3lcz_A YCZA, inhibitor of trap 97.1 7.8E-05 2.7E-09 49.1 -0.1 32 83-114 4-38 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.8 0.00056 1.9E-08 45.0 2.1 27 88-114 9-38 (53)
11 3pmq_A Decaheme cytochrome C M 87.3 0.033 1.1E-06 52.3 -3.6 51 86-136 189-257 (669)
12 2lli_A Protein AIR2; RNA surve 68.6 2.5 8.5E-05 30.5 2.1 26 86-111 2-35 (124)
13 3pmq_A Decaheme cytochrome C M 64.7 0.48 1.7E-05 44.5 -3.0 50 100-155 192-269 (669)
14 2ec7_A GAG polyprotein (PR55GA 52.4 8.4 0.00029 23.8 2.1 15 85-99 3-17 (49)
15 1y0p_A Fumarate reductase flav 51.8 0.92 3.1E-05 39.8 -3.4 67 90-156 13-103 (571)
16 1pft_A TFIIB, PFTFIIBN; N-term 50.5 7.8 0.00027 23.8 1.8 8 135-142 23-30 (50)
17 2vf7_A UVRA2, excinuclease ABC 40.3 17 0.00059 34.6 3.2 32 101-135 640-671 (842)
18 2r6f_A Excinuclease ABC subuni 38.2 19 0.00066 35.1 3.2 31 101-134 755-785 (972)
19 3nyb_B Protein AIR2; polya RNA 37.7 24 0.00081 24.4 2.8 25 87-111 4-36 (83)
20 2ysm_A Myeloid/lymphoid or mix 33.4 33 0.0011 24.0 3.0 62 86-149 5-81 (111)
21 2ygr_A Uvrabc system protein A 31.4 29 0.00099 34.0 3.2 31 101-134 773-803 (993)
22 1a1t_A Nucleocapsid protein; s 31.3 26 0.00089 21.7 2.0 15 85-99 9-23 (55)
23 1qo8_A Flavocytochrome C3 fuma 30.6 3.7 0.00013 36.0 -2.9 56 90-146 14-86 (566)
24 2r6f_A Excinuclease ABC subuni 27.4 22 0.00074 34.8 1.5 23 126-148 754-788 (972)
25 2l5u_A Chromodomain-helicase-D 26.7 40 0.0014 21.5 2.3 49 87-136 10-60 (61)
26 1dl6_A Transcription factor II 26.7 32 0.0011 22.1 1.8 9 134-142 28-36 (58)
27 2jr6_A UPF0434 protein NMA0874 26.1 30 0.001 23.2 1.6 8 135-142 25-32 (68)
28 2hf1_A Tetraacyldisaccharide-1 26.0 29 0.00099 23.3 1.6 8 135-142 25-32 (68)
29 2jny_A Uncharacterized BCR; st 24.4 32 0.0011 23.0 1.5 9 134-142 26-34 (67)
30 2pk7_A Uncharacterized protein 23.8 34 0.0012 23.0 1.6 8 135-142 25-32 (69)
31 2kpi_A Uncharacterized protein 22.7 39 0.0013 21.7 1.7 17 126-142 11-34 (56)
32 2vf7_A UVRA2, excinuclease ABC 22.3 31 0.0011 32.9 1.5 23 127-149 640-674 (842)
33 2js4_A UPF0434 protein BB2007; 21.6 39 0.0013 22.7 1.5 8 135-142 25-32 (70)
34 1nc8_A Nucleocapsid protein; H 21.3 69 0.0024 17.5 2.3 16 84-99 2-17 (29)
35 2bx2_L Ribonuclease E, RNAse E 20.6 22 0.00075 32.3 0.1 12 126-137 409-420 (517)
36 3ga8_A HTH-type transcriptiona 20.6 66 0.0023 21.2 2.5 13 98-110 1-13 (78)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.9e-12 Score=90.91 Aligned_cols=60 Identities=30% Similarity=0.784 Sum_probs=50.4
Q ss_pred CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA 149 (159)
Q Consensus 86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~ 149 (159)
++.+.|+.|+|+|+ .+|+.|+|+|++.....++ +.+++|+.|+|+|++ +|+.|+|.|++.
T Consensus 26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~----~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPF----VMRSTCRRCGGRGSIIISPCVVCRGAGQAK 94 (104)
T ss_dssp SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTE----EEEEECSSSSSSSEECSSCCSSSSSCSEEC
T ss_pred eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCE----EEEEECCcCCCcceECCCcCCCCCCeeEEE
Confidence 56789999999995 6899999999986543221 356899999999998 899999999986
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.24 E-value=3.6e-12 Score=87.51 Aligned_cols=60 Identities=28% Similarity=0.752 Sum_probs=50.0
Q ss_pred CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467 86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA 149 (159)
Q Consensus 86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~ 149 (159)
++.+.|+.|+|+|. .+|+.|+|+|++...+.+ + +...+|+.|+|+|.+ +|+.|+|.|++.
T Consensus 9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~---~-~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGF---F-AVQQTCPHCQGRGTLIKDPCNKCHGHGRVE 77 (79)
T ss_dssp CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETT---E-EEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred ccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCC---C-EEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence 56789999999996 589999999997653322 1 346799999999999 999999999986
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.04 E-value=3.2e-11 Score=99.52 Aligned_cols=79 Identities=22% Similarity=0.564 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee----
Q 031467 71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---- 137 (159)
Q Consensus 71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---- 137 (159)
++..-||++..-..+ .+.+.|+.|+|+|+ .+|+.|+|+|++....++...+.+.+++|+.|+|+|++
T Consensus 17 ~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~ 96 (248)
T 1nlt_A 17 EISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK 96 (248)
T ss_dssp EEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT
T ss_pred EEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC
Confidence 444445666655444 46789999999996 68999999999865444321222456789999999964
Q ss_pred -eCCCCCceeEEe
Q 031467 138 -CCSDCKGTGFRA 149 (159)
Q Consensus 138 -~C~~C~GtG~v~ 149 (159)
+|++|+|.|++.
T Consensus 97 ~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 97 DRCKSCNGKKVEN 109 (248)
T ss_dssp SBCSSSTTSCEEE
T ss_pred CCCcccCCCceEe
Confidence 799999999875
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.12 E-value=1.1e-06 Score=59.86 Aligned_cols=41 Identities=34% Similarity=0.781 Sum_probs=29.1
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
++|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 12 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 12 EECDVCHGSGAKPG---------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp EECGGGTTTSBCSS---------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred eECCCCcccccCCC---------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 56888888886310 234678888888864 688888888774
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.4e-05 Score=57.51 Aligned_cols=42 Identities=31% Similarity=0.698 Sum_probs=28.8
Q ss_pred cccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467 99 HIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA 149 (159)
Q Consensus 99 ~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~ 149 (159)
.+.|+.|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 28 ~~~C~~C~G~G~~~-g--------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 28 MDTCERCNGKGNEP-G--------TKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CEECSSSSSSSSCT-T--------CCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred eeECCCCcCCccCC-C--------CCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 36788888887520 0 234678888888854 688888888764
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.61 E-value=3.7e-05 Score=50.68 Aligned_cols=25 Identities=40% Similarity=0.849 Sum_probs=20.8
Q ss_pred ceEcCCCCcccee---eCCCCCceeEEe
Q 031467 125 NTTCVICAGKGSV---CCSDCKGTGFRA 149 (159)
Q Consensus 125 ~~tCp~C~G~G~i---~C~~C~GtG~v~ 149 (159)
..+|+.|+|+|++ +|+.|+|.|.+.
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 5688888888886 888888888875
No 7
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.35 E-value=0.00013 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.807 Sum_probs=15.4
Q ss_pred eEcCCCCcccee---eCCCCCceeEEe
Q 031467 126 TTCVICAGKGSV---CCSDCKGTGFRA 149 (159)
Q Consensus 126 ~tCp~C~G~G~i---~C~~C~GtG~v~ 149 (159)
.+|+.|+|.|.+ +|++|+|.|++.
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred ccCCCCcceeccCCCCCccCCCCccEE
Confidence 456666666655 677777777664
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.30 E-value=0.00015 Score=59.52 Aligned_cols=40 Identities=38% Similarity=0.764 Sum_probs=32.1
Q ss_pred CccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467 88 PVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV 137 (159)
Q Consensus 88 ~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i 137 (159)
...|+.|+|+|. .+|+.|+|+|.+.. ...+|+.|+|.|.+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~----------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID----------PKDRCKSCNGKKVE 108 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC----------TTSBCSSSTTSCEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec----------cCCCCcccCCCceE
Confidence 578999999995 36999999998531 23579999999976
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.07 E-value=7.8e-05 Score=49.10 Aligned_cols=32 Identities=25% Similarity=0.702 Sum_probs=24.4
Q ss_pred cCCCCCccCCCCCCCCc---ccCCCCCcccEEeec
Q 031467 83 SQQPRPVSCSSCNSNGH---IDCKWCAGTGFFILG 114 (159)
Q Consensus 83 ~~~~r~~~C~~C~GsG~---~~C~~C~GtG~i~~~ 114 (159)
+.+....+|+.|+|+|. ..|+.|+|+|++...
T Consensus 4 ~~qq~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 4 ATDDLETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp CHHHHEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred ecCceeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 33445678999999997 579999999987543
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.79 E-value=0.00056 Score=44.96 Aligned_cols=27 Identities=30% Similarity=0.863 Sum_probs=20.2
Q ss_pred CccCCCCCCCCc---ccCCCCCcccEEeec
Q 031467 88 PVSCSSCNSNGH---IDCKWCAGTGFFILG 114 (159)
Q Consensus 88 ~~~C~~C~GsG~---~~C~~C~GtG~i~~~ 114 (159)
...|+.|+|+|. .+|+.|+|+|++...
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEEE
Confidence 457888888886 468888888887643
No 11
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=87.29 E-value=0.033 Score=52.32 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCccCCCCCCCCc---------ccCCCCCcccEEeecc-c--------ccccCCCCceEcCCCCccce
Q 031467 86 PRPVSCSSCNSNGH---------IDCKWCAGTGFFILGD-N--------MLCQVPSRNTTCVICAGKGS 136 (159)
Q Consensus 86 ~r~~~C~~C~GsG~---------~~C~~C~GtG~i~~~~-~--------~~~~~~~~~~tCp~C~G~G~ 136 (159)
.+.+.|..|||+|+ ++|+.|||+....... . .....++....|..|+..+.
T Consensus 189 ~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 189 VSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp CCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred ccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 56789999999984 5799999994221111 0 01122244567888888775
No 12
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=68.59 E-value=2.5 Score=30.52 Aligned_cols=26 Identities=31% Similarity=0.926 Sum_probs=16.0
Q ss_pred CCCccCCCCCCCCc-------ccCCCCCcc-cEE
Q 031467 86 PRPVSCSSCNSNGH-------IDCKWCAGT-GFF 111 (159)
Q Consensus 86 ~r~~~C~~C~GsG~-------~~C~~C~Gt-G~i 111 (159)
.++..|..|...|. ..|..|... |.+
T Consensus 2 e~~~~C~~C~~~GH~~~~Cp~~~C~~Cg~~~gH~ 35 (124)
T 2lli_A 2 EAAPKCNNCSQRGHLKKDCPHIICSYCGATDDHY 35 (124)
T ss_dssp CCSSCCSSCSSSSCCTTTTTSCCCTTTCCTTTCC
T ss_pred CCCCcccCCCCCCcCcccCcCCcCcCCCCcCCcc
Confidence 35566777777775 346666665 553
No 13
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=64.71 E-value=0.48 Score=44.48 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=34.1
Q ss_pred ccCCCCCcccEEeecccccccCCCCceEcCCCCccc------------------------eeeCCCCCceeE----Eeec
Q 031467 100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG------------------------SVCCSDCKGTGF----RAKW 151 (159)
Q Consensus 100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G------------------------~i~C~~C~GtG~----v~kw 151 (159)
..|..|+|+|-.. +.. ....++|+.|+|.. ...|..|+..+. -..|
T Consensus 192 ~~C~tCHGsGA~~-Gt~-----~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~~la~~~~w 265 (669)
T 3pmq_A 192 DTCNSCHSNLAFH-GGR-----YNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNPDLADRQNW 265 (669)
T ss_dssp HHHHHHHSSCCTT-TTT-----SCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCTTCCSCSCT
T ss_pred CcCCCCCCCCCcC-Ccc-----CcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcccccccccc
Confidence 5799999998621 110 02457899999982 237999999875 3557
Q ss_pred cCCC
Q 031467 152 LGEP 155 (159)
Q Consensus 152 l~~~ 155 (159)
...|
T Consensus 266 ~~~p 269 (669)
T 3pmq_A 266 YRVP 269 (669)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 6544
No 14
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=52.40 E-value=8.4 Score=23.75 Aligned_cols=15 Identities=33% Similarity=0.893 Sum_probs=9.5
Q ss_pred CCCCccCCCCCCCCc
Q 031467 85 QPRPVSCSSCNSNGH 99 (159)
Q Consensus 85 ~~r~~~C~~C~GsG~ 99 (159)
+.++..|..|...|+
T Consensus 3 ~~r~~~C~~Cg~~GH 17 (49)
T 2ec7_A 3 QRKVIRCWNCGKEGH 17 (49)
T ss_dssp CCCCCBCTTTCCBTC
T ss_pred CCCcCeeeecCCCCc
Confidence 445566777766665
No 15
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=51.76 E-value=0.92 Score=39.81 Aligned_cols=67 Identities=24% Similarity=0.568 Sum_probs=41.2
Q ss_pred cCCCCCCCCc-----------ccCCCCCcccEEeecc----ccc--ccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467 90 SCSSCNSNGH-----------IDCKWCAGTGFFILGD----NML--CQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA 149 (159)
Q Consensus 90 ~C~~C~GsG~-----------~~C~~C~GtG~i~~~~----~~~--~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~ 149 (159)
.|..||+... ..|-.||......... ... -.-......|..|+..... .|..||-..+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~~~~~C~~CH~~~~~~ 92 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNM 92 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSCBCCGGGGTCCCCCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccCCCccccccChhhccC
Confidence 7999999763 3599999864311110 000 0000135689999987544 799999865443
Q ss_pred ----eccCCCC
Q 031467 150 ----KWLGEPP 156 (159)
Q Consensus 150 ----kwl~~~~ 156 (159)
+|...|+
T Consensus 93 p~~~~W~~~~~ 103 (571)
T 1y0p_A 93 PYAKKWLRDEP 103 (571)
T ss_dssp TTBCCCCCCCC
T ss_pred ccccccccCCc
Confidence 5666554
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=50.50 E-value=7.8 Score=23.78 Aligned_cols=8 Identities=38% Similarity=1.435 Sum_probs=4.9
Q ss_pred ceeeCCCC
Q 031467 135 GSVCCSDC 142 (159)
Q Consensus 135 G~i~C~~C 142 (159)
|.+.|+.|
T Consensus 23 gelvC~~C 30 (50)
T 1pft_A 23 GEIVCAKC 30 (50)
T ss_dssp TEEEESSS
T ss_pred CeEECccc
Confidence 55566666
No 17
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=40.31 E-value=17 Score=34.65 Aligned_cols=32 Identities=28% Similarity=0.702 Sum_probs=15.1
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCccc
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG 135 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G 135 (159)
.|+.|.|.|.+...-+++. .-..+|+.|+|+.
T Consensus 640 ~c~~c~g~G~~~~~~~f~~---~v~~~c~~c~G~r 671 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLP---SVYAPCPVCHGTR 671 (842)
T ss_dssp BCTTTTTCSEEEETTCSSS---CEEEECTTTTTCC
T ss_pred ccccccCCCccchhhhcCC---ccceecccccCcc
Confidence 3666666666544433321 1234455555543
No 18
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=38.25 E-value=19 Score=35.13 Aligned_cols=31 Identities=29% Similarity=0.706 Sum_probs=18.4
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCcc
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK 134 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~ 134 (159)
+|+.|.|.|.+.+..+++. .-..+|+.|.|+
T Consensus 755 rC~~C~g~G~i~~em~fl~---~v~~~ce~c~G~ 785 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLP---DVYVPCEVCHGK 785 (972)
T ss_dssp BCTTTTTCSEEEECCSSSC---CEEEECTTTTTC
T ss_pred cccccccccceeeehhccc---cccccccccccc
Confidence 6777777777766544321 223556666665
No 19
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=37.74 E-value=24 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=12.1
Q ss_pred CCccCCCCCCCCc--c------cCCCCCcccEE
Q 031467 87 RPVSCSSCNSNGH--I------DCKWCAGTGFF 111 (159)
Q Consensus 87 r~~~C~~C~GsG~--~------~C~~C~GtG~i 111 (159)
+.+.|..|...|+ . +|-.|..+|.+
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~ 36 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEK 36 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcc
Confidence 4677999999996 2 34456666553
No 20
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=33.42 E-value=33 Score=23.95 Aligned_cols=62 Identities=21% Similarity=0.545 Sum_probs=34.5
Q ss_pred CCCccCCCCCCCCc----ccCCCCCcccEEe-ecccccccCCCCce------EcCCCCccc----eeeCCCCCceeEEe
Q 031467 86 PRPVSCSSCNSNGH----IDCKWCAGTGFFI-LGDNMLCQVPSRNT------TCVICAGKG----SVCCSDCKGTGFRA 149 (159)
Q Consensus 86 ~r~~~C~~C~GsG~----~~C~~C~GtG~i~-~~~~~~~~~~~~~~------tCp~C~G~G----~i~C~~C~GtG~v~ 149 (159)
.....|..|...|. +.|..|.-..... +.... -....... .|..|+..| .+.|..|. .+|=.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~-~~yH~ 81 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-TPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCD-KGYHT 81 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-CTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSC-CEEEG
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-ccccccCccCCcCCcccccCccCCCCCeeECCCCC-cHHhH
Confidence 45678999999997 4788887654321 00000 00111222 466666666 45888884 44433
No 21
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=31.38 E-value=29 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.687 Sum_probs=19.4
Q ss_pred cCCCCCcccEEeecccccccCCCCceEcCCCCcc
Q 031467 101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGK 134 (159)
Q Consensus 101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~ 134 (159)
+|+.|.|.|.+....+++.. -..+|..|.|.
T Consensus 773 rC~~C~g~G~~~~e~~fl~~---v~~~ce~c~G~ 803 (993)
T 2ygr_A 773 RCEACTGDGTIKIEMNFLPD---VYVPCEVCQGA 803 (993)
T ss_dssp BCTTTTSSSEEEECCTTSCC---EEEECTTTTTC
T ss_pred cccccccccceeehhhcccc---ceeeehhcccc
Confidence 68888888887665544322 24567777664
No 22
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=31.34 E-value=26 Score=21.69 Aligned_cols=15 Identities=40% Similarity=0.959 Sum_probs=8.8
Q ss_pred CCCCccCCCCCCCCc
Q 031467 85 QPRPVSCSSCNSNGH 99 (159)
Q Consensus 85 ~~r~~~C~~C~GsG~ 99 (159)
+.++..|..|...|+
T Consensus 9 ~~~~~~C~~Cg~~GH 23 (55)
T 1a1t_A 9 QRKTVKCFNCGKEGH 23 (55)
T ss_dssp GGGTCBCTTTCCBSS
T ss_pred CCCCcceeeeCCCCc
Confidence 344556666666664
No 23
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=30.63 E-value=3.7 Score=36.01 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=36.2
Q ss_pred cCCCCCCCCcc----------cCCCCCcccEEeec----ccccccCCCCceEcCCCCcccee---eCCCCCcee
Q 031467 90 SCSSCNSNGHI----------DCKWCAGTGFFILG----DNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTG 146 (159)
Q Consensus 90 ~C~~C~GsG~~----------~C~~C~GtG~i~~~----~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG 146 (159)
.|..|||.+.. .|-.||+....... .+.+.. ......|..|+-.... .|..||...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~-~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNS-HLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSS-TTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchh-cCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 69999998752 59999986321110 011111 1245789999987654 899999865
No 24
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=27.39 E-value=22 Score=34.81 Aligned_cols=23 Identities=30% Similarity=0.899 Sum_probs=18.8
Q ss_pred eEcCCCCcccee------------eCCCCCceeEE
Q 031467 126 TTCVICAGKGSV------------CCSDCKGTGFR 148 (159)
Q Consensus 126 ~tCp~C~G~G~i------------~C~~C~GtG~v 148 (159)
-+|+.|+|.|.+ .|+.|+|..+.
T Consensus 754 grC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~ 788 (972)
T 2r6f_A 754 GRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYN 788 (972)
T ss_dssp TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBC
T ss_pred ccccccccccceeeehhcccccccccccccccccc
Confidence 369999999986 79999998663
No 25
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.73 E-value=40 Score=21.48 Aligned_cols=49 Identities=22% Similarity=0.562 Sum_probs=28.0
Q ss_pred CCccCCCCCCCCc-ccCCCCCcccEEee-cccccccCCCCceEcCCCCccce
Q 031467 87 RPVSCSSCNSNGH-IDCKWCAGTGFFIL-GDNMLCQVPSRNTTCVICAGKGS 136 (159)
Q Consensus 87 r~~~C~~C~GsG~-~~C~~C~GtG~i~~-~~~~~~~~~~~~~tCp~C~G~G~ 136 (159)
....|..|+..|. +.|..|.. ++-.. -+-.+-..+.+...|+.|..+|.
T Consensus 10 ~~~~C~vC~~~g~ll~CD~C~~-~fH~~Cl~p~l~~~p~g~W~C~~C~~~g~ 60 (61)
T 2l5u_A 10 HQDYCEVCQQGGEIILCDTCPR-AYHMVCLDPDMEKAPEGKWSCPHCEKEGI 60 (61)
T ss_dssp CCSSCTTTSCCSSEEECSSSSC-EEEHHHHCTTCCSCCCSSCCCTTGGGGSC
T ss_pred CCCCCccCCCCCcEEECCCCCh-hhhhhccCCCCCCCCCCceECcccccccc
Confidence 4567999988776 56888886 44211 01011123345566777776653
No 26
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.68 E-value=32 Score=22.10 Aligned_cols=9 Identities=33% Similarity=1.232 Sum_probs=5.6
Q ss_pred cceeeCCCC
Q 031467 134 KGSVCCSDC 142 (159)
Q Consensus 134 ~G~i~C~~C 142 (159)
.|.+.|..|
T Consensus 28 ~ge~vC~~C 36 (58)
T 1dl6_A 28 AGDMICPEC 36 (58)
T ss_dssp SCCEECTTT
T ss_pred CCeEEeCCC
Confidence 355577777
No 27
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.08 E-value=30 Score=23.21 Aligned_cols=8 Identities=0% Similarity=0.056 Sum_probs=5.4
Q ss_pred ceeeCCCC
Q 031467 135 GSVCCSDC 142 (159)
Q Consensus 135 G~i~C~~C 142 (159)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2jr6_A 25 QELWSRQA 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 55677777
No 28
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.00 E-value=29 Score=23.26 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=5.3
Q ss_pred ceeeCCCC
Q 031467 135 GSVCCSDC 142 (159)
Q Consensus 135 G~i~C~~C 142 (159)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2hf1_A 25 DELICKGD 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 55667776
No 29
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.38 E-value=32 Score=23.04 Aligned_cols=9 Identities=0% Similarity=-0.127 Sum_probs=5.4
Q ss_pred cceeeCCCC
Q 031467 134 KGSVCCSDC 142 (159)
Q Consensus 134 ~G~i~C~~C 142 (159)
.|...|+.|
T Consensus 26 ~g~LvC~~c 34 (67)
T 2jny_A 26 EQLLVNERL 34 (67)
T ss_dssp TTEEEETTT
T ss_pred CCEEEcCCC
Confidence 355566666
No 30
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.82 E-value=34 Score=22.99 Aligned_cols=8 Identities=0% Similarity=0.028 Sum_probs=5.1
Q ss_pred ceeeCCCC
Q 031467 135 GSVCCSDC 142 (159)
Q Consensus 135 G~i~C~~C 142 (159)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (69)
T 2pk7_A 25 TELISKGA 32 (69)
T ss_dssp SEEEETTT
T ss_pred CEEEcCCC
Confidence 55567666
No 31
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.72 E-value=39 Score=21.69 Aligned_cols=17 Identities=29% Similarity=0.968 Sum_probs=11.6
Q ss_pred eEcCCCCcc-----ceeeCC--CC
Q 031467 126 TTCVICAGK-----GSVCCS--DC 142 (159)
Q Consensus 126 ~tCp~C~G~-----G~i~C~--~C 142 (159)
-.||.|+|. |...|+ .|
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c 34 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDC 34 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSC
T ss_pred eeCCCCCCcceecCCEEEcCCcCC
Confidence 357777765 666777 77
No 32
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=22.25 E-value=31 Score=32.91 Aligned_cols=23 Identities=43% Similarity=0.969 Sum_probs=18.6
Q ss_pred EcCCCCcccee------------eCCCCCceeEEe
Q 031467 127 TCVICAGKGSV------------CCSDCKGTGFRA 149 (159)
Q Consensus 127 tCp~C~G~G~i------------~C~~C~GtG~v~ 149 (159)
.|+.|.|.|.+ .|+.|+|+.|-.
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~ 674 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNA 674 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCT
T ss_pred ccccccCCCccchhhhcCCccceecccccCcccch
Confidence 59999999976 699999987644
No 33
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.61 E-value=39 Score=22.72 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=5.1
Q ss_pred ceeeCCCC
Q 031467 135 GSVCCSDC 142 (159)
Q Consensus 135 G~i~C~~C 142 (159)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (70)
T 2js4_A 25 AELVCNAD 32 (70)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 55566666
No 34
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=21.32 E-value=69 Score=17.50 Aligned_cols=16 Identities=38% Similarity=0.893 Sum_probs=10.7
Q ss_pred CCCCCccCCCCCCCCc
Q 031467 84 QQPRPVSCSSCNSNGH 99 (159)
Q Consensus 84 ~~~r~~~C~~C~GsG~ 99 (159)
++.+.+.|..|.-.|+
T Consensus 2 ~~r~~~~C~nCgk~GH 17 (29)
T 1nc8_A 2 QQRKVIRCWNCGKEGH 17 (29)
T ss_dssp CCCCCCBCTTTSCBSS
T ss_pred CCCCCCEEEECCcccc
Confidence 4455667777777775
No 35
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=20.60 E-value=22 Score=32.34 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=7.1
Q ss_pred eEcCCCCcccee
Q 031467 126 TTCVICAGKGSV 137 (159)
Q Consensus 126 ~tCp~C~G~G~i 137 (159)
.+||.|+|+|.+
T Consensus 409 ~~Cp~C~G~G~v 420 (517)
T 2bx2_L 409 HVCPRCSGTGTV 420 (517)
T ss_dssp CCCSSSSSSSCC
T ss_pred CcCCCcCCceeE
Confidence 456666666654
No 36
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.60 E-value=66 Score=21.17 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=8.0
Q ss_pred CcccCCCCCcccE
Q 031467 98 GHIDCKWCAGTGF 110 (159)
Q Consensus 98 G~~~C~~C~GtG~ 110 (159)
|...|+.|++...
T Consensus 1 ~~m~Cp~Cg~~~l 13 (78)
T 3ga8_A 1 GHMKCPVCHQGEM 13 (78)
T ss_dssp --CBCTTTSSSBE
T ss_pred CceECCCCCCCee
Confidence 4568999987533
Done!