Query 031468
Match_columns 159
No_of_seqs 114 out of 521
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 23:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 6.8E-38 2.3E-42 249.2 17.2 149 2-159 80-228 (233)
2 3v6i_A V-type ATP synthase sub 100.0 1.4E-29 4.6E-34 195.2 17.0 123 4-155 65-187 (187)
3 3lg8_A A-type ATP synthase sub 99.9 7.8E-30 2.7E-34 180.8 -4.3 102 38-154 4-106 (106)
4 2dm9_A V-type ATP synthase sub 99.9 1.7E-25 5.9E-30 171.5 12.3 131 3-155 68-198 (198)
5 2wss_S ATP synthase subunit O, 87.6 0.019 6.6E-07 43.3 -4.1 81 61-145 88-186 (190)
6 1use_A VAsp, vasodilator-stimu 52.0 17 0.00059 21.0 3.2 20 5-24 19-38 (45)
7 3fx7_A Putative uncharacterize 48.1 26 0.0009 23.4 4.2 33 16-48 48-80 (94)
8 3bpj_A Eukaryotic translation 47.7 52 0.0018 21.0 6.5 49 22-80 20-68 (80)
9 4etp_A Kinesin-like protein KA 35.7 1.2E+02 0.0041 25.0 7.3 58 8-66 12-70 (403)
10 3m91_A Proteasome-associated A 33.2 75 0.0026 18.6 4.5 29 6-34 16-44 (51)
11 3hfe_A Potassium voltage-gated 32.9 26 0.0009 18.5 1.8 16 131-146 5-20 (31)
12 1nwz_A PYP, photoactive yellow 28.3 48 0.0016 22.9 3.1 25 114-138 25-49 (125)
13 1mzu_A PPR; photoactive yellow 27.2 51 0.0017 23.0 3.1 25 114-138 30-54 (129)
14 1h3l_A RNA polymerase sigma fa 24.2 1.2E+02 0.0042 18.2 4.7 35 14-49 39-73 (87)
15 3tdu_C Cullin-1, CUL-1; E2:E3, 24.0 79 0.0027 19.9 3.3 47 4-50 13-61 (77)
16 2qdq_A Talin-1; dimerisation d 23.0 69 0.0024 18.8 2.6 31 9-41 9-41 (50)
17 3tuf_A Stage III sporulation p 22.5 99 0.0034 23.3 4.1 61 4-65 86-164 (197)
18 4e22_A Cytidylate kinase; P-lo 22.2 1.2E+02 0.0042 22.6 4.7 29 116-144 145-183 (252)
19 3clm_A Transaldolase; YP_20865 21.4 96 0.0033 25.3 4.1 84 38-139 75-169 (352)
20 1yhl_A Farnesyl pyrophosphate 21.3 2.2E+02 0.0075 22.8 6.4 34 16-49 323-356 (362)
21 3o2p_E Cell division control p 20.8 97 0.0033 20.1 3.3 45 5-49 26-72 (88)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=6.8e-38 Score=249.19 Aligned_cols=149 Identities=34% Similarity=0.529 Sum_probs=135.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHH
Q 031468 2 QLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEE 81 (159)
Q Consensus 2 ~~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~ 81 (159)
..|++|+++|.+|+++++++|+.|+++|..++.++..|+++|.+||.||+..+++++++|+|+|+|..++++++.++..+
T Consensus 80 ~~~~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~ 159 (233)
T 4efa_E 80 IANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMRE 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcCCCCC
Q 031468 82 YAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159 (159)
Q Consensus 82 ~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~~~~~ 159 (159)
|+..+++......++...+|+++ .|+|||+|++.||+|+|||||++||+.++++++|+||+.|||.|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~---------~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~ 228 (233)
T 4efa_E 160 YGEKAQRAPLEEIVISNDYLNKD---------LVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT 228 (233)
T ss_dssp HHHHTTTSCCCEEEECSSCCCTT---------TCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHhCCCCccccccccccCCcc---------cccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence 99988875444444445666553 7999999999999999999999999999999999999999999874
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.97 E-value=1.4e-29 Score=195.18 Aligned_cols=123 Identities=18% Similarity=0.261 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHH
Q 031468 4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 83 (159)
Q Consensus 4 n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~ 83 (159)
.++|+++|.+|+++++++|+.|+++|.+++.++ .|+++|.+||.+|+..+++++++| |+|.|.+++++++.+ +
T Consensus 65 le~r~~~L~ar~eli~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~- 137 (187)
T 3v6i_A 65 LLVATARTQARGEVLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R- 137 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c-
Confidence 578999999999999999999999999999985 799999999999999999998866 999999999988774 2
Q ss_pred HhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468 84 QKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 155 (159)
Q Consensus 84 ~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~ 155 (159)
++++..+ .+|.|||+|.+.||+|+|||||++||+.+|+.++|+|++.|||
T Consensus 138 ------~~~~~~~----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 138 ------GVELQAE----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp ------TCEEEEC----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------CeeeCCC----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 1343222 2789999999999999999999999999999999999999998
No 3
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=7.8e-30 Score=180.79 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHH-HHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCcc
Q 031468 38 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS 116 (159)
Q Consensus 38 ~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~-i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~ 116 (159)
+|+++|++||.||+..+++++++|+||++|.+++++. ++++.++|+.++|+ +++++++. | .+|+
T Consensus 4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~~ 68 (106)
T 3lg8_A 4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDIA 68 (106)
T ss_dssp STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------cccc
Confidence 7999999999999999999999999999999999999 99999999998887 56666542 2 3899
Q ss_pred ccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhc
Q 031468 117 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 154 (159)
Q Consensus 117 GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF 154 (159)
|||++.+.+|+|+|||||++||++++++++|+|++.||
T Consensus 69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
No 4
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.93 E-value=1.7e-25 Score=171.48 Aligned_cols=131 Identities=25% Similarity=0.371 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHH
Q 031468 3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY 82 (159)
Q Consensus 3 ~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~ 82 (159)
.+++|..++.+|+++++.+|..|++.|.+++ ++.|+++|.+||.+++..++++.++|+|+|.|.+.+++++..+...|
T Consensus 68 ~~~~r~~~l~~~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~ 145 (198)
T 2dm9_A 68 RLEVRRKRLAIQEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSEL 145 (198)
T ss_dssp -------------CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999965 33899999999999999998889999999999999999999887777
Q ss_pred HHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468 83 AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 155 (159)
Q Consensus 83 ~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~ 155 (159)
+ ++.++++. | ..+.|||+|.+.+|+|.|||||++||+.+++.+.|+|++.|||
T Consensus 146 ~------~~~l~i~~-------~-------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 146 G------DVSIELGE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp T------TCEEEECC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred c------CceEEECC-------C-------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 5 25677752 1 2689999999999999999999999999999999999999997
No 5
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=87.65 E-value=0.019 Score=43.32 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=39.0
Q ss_pred EEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCC--------C----------CCCCCCccccEEEE
Q 031468 61 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH--------H----------NAHGPSCSGGVVVA 122 (159)
Q Consensus 61 v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~--------~----------~~~~~~~~GGviv~ 122 (159)
+-+...-...+.+++..+..-+....|. ..++|-...+|+++... . ...|++++||++|.
T Consensus 88 ll~~~~R~~~l~~I~~~f~~l~~~~~~~--~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~ 165 (190)
T 2wss_S 88 LLAENGRLTNTPAVISAFSTMMSVHRGE--VPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVR 165 (190)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHTTTSCC--CCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC-------------------
T ss_pred HHHhCCcHhhHHHHHHHHHHHHHHHcCe--eEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEE
Confidence 3444455667777777666665554443 34444444556554321 0 11357899999999
Q ss_pred ecCCcEEEeccHHHHHHHHHHhc
Q 031468 123 SRDGKIVCENTLDARLDVVFRKK 145 (159)
Q Consensus 123 s~dg~i~vdnTle~RL~~~~~~~ 145 (159)
- |.-++|.|+.+||+.+...+
T Consensus 166 v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 166 I--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp -----CCTTTTTTTTTTTTCTTT
T ss_pred E--CCEEEehhHHHHHHHHHHHH
Confidence 8 77789999999998776554
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=52.04 E-value=17 Score=20.96 Aligned_cols=20 Identities=0% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031468 5 ASRIKVLQAQDDLVSNMMEA 24 (159)
Q Consensus 5 ~aR~~~L~ar~~~i~~v~~~ 24 (159)
+.|+++-++++++|+.+..+
T Consensus 19 E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 19 EVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443
No 7
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=48.08 E-value=26 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 031468 16 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIV 48 (159)
Q Consensus 16 ~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ 48 (159)
.-.+++|++..+.|+.+....++|..+|+.+|.
T Consensus 48 ~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 48 DKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 345678888888888887766688888888875
No 8
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=47.73 E-value=52 Score=20.97 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHH
Q 031468 22 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 80 (159)
Q Consensus 22 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~ 80 (159)
-+....+|..+..++ .|..|++.|+.+.+.-|. ..|...+...+..+..
T Consensus 20 ~~~l~~kl~~~~ks~-~y~~f~~~lir~l~~~L~---------~~dikkv~s~l~~l~n 68 (80)
T 3bpj_A 20 GKLLKDKITQYEKSL-YYASFLEVLVRDVCISLE---------IDDLKKITNSLTVLCS 68 (80)
T ss_dssp HHHHHHHHGGGTTST-THHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCh-hHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHH
Confidence 344556687888888 999999999999977553 4566666666555443
No 9
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.68 E-value=1.2e+02 Score=25.01 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccc
Q 031468 8 IKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKD 66 (159)
Q Consensus 8 ~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~ 66 (159)
++.|+.+-+-+++-.+.+..++..+...- .-.+.+++-+..-+..+.+. .|.++|||-
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~rr~l~n~~~elkgnIrV~vRvRP~ 70 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEIL-IKEETVRRTLHNELQELRGNIRVYLRIRPA 70 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 34444444555555555555555554322 23344555555556666666 677888884
No 10
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.21 E-value=75 Score=18.61 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031468 6 SRIKVLQAQDDLVSNMMEAASKEVLNVSR 34 (159)
Q Consensus 6 aR~~~L~ar~~~i~~v~~~a~~~L~~~~~ 34 (159)
+++.-|.+|.+-+.+.+.+|+.+|..+..
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999997754
No 11
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=32.91 E-value=26 Score=18.47 Aligned_cols=16 Identities=44% Similarity=0.420 Sum_probs=13.3
Q ss_pred eccHHHHHHHHHHhch
Q 031468 131 ENTLDARLDVVFRKKL 146 (159)
Q Consensus 131 dnTle~RL~~~~~~~~ 146 (159)
.||+-+||.++.+.+.
T Consensus 5 ~nTIGaRLnRvE~k~t 20 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVT 20 (31)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 5899999999987653
No 12
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=28.28 E-value=48 Score=22.92 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.9
Q ss_pred CccccEEEEecCCcEEEeccHHHHH
Q 031468 114 SCSGGVVVASRDGKIVCENTLDARL 138 (159)
Q Consensus 114 ~~~GGviv~s~dg~i~vdnTle~RL 138 (159)
.+.=|+++.+.+|+|+.=|.+..++
T Consensus 25 ~l~~Gii~lD~~g~I~~~N~~~e~~ 49 (125)
T 1nwz_A 25 GLAFGAIQLDGDGNILQYNAAEGDI 49 (125)
T ss_dssp TCSSEEEEEETTCBEEEECHHHHHH
T ss_pred ccCceEEEECCCCEEEEEHHHHHHH
Confidence 3456999999999999999998887
No 13
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=27.23 E-value=51 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred CccccEEEEecCCcEEEeccHHHHH
Q 031468 114 SCSGGVVVASRDGKIVCENTLDARL 138 (159)
Q Consensus 114 ~~~GGviv~s~dg~i~vdnTle~RL 138 (159)
.+.=|+++.+.+|+|+.=|.+..++
T Consensus 30 ~l~~GiivlD~dg~I~~~N~~~e~i 54 (129)
T 1mzu_A 30 ALPVGAIQVDGSGVIHRYNRTESRL 54 (129)
T ss_dssp GCSSEEEEEETTCBEEEECHHHHHH
T ss_pred ccCceEEEECCCCeEEEEHHHHHHH
Confidence 3445999999999999999998887
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=24.19 E-value=1.2e+02 Score=18.18 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 031468 14 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 49 (159)
Q Consensus 14 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 49 (159)
-+++++++|-.+-+.+..+.... ....+|...+..
T Consensus 39 aeD~vQe~fl~~~~~~~~~~~~~-~~~~wl~~i~~n 73 (87)
T 1h3l_A 39 AEDLVQETYAKAYASFHQFREGT-NLKAWLYRILTN 73 (87)
T ss_dssp HHHHHHHHHHHHHHHGGGCCSSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHH
Confidence 35566666666666655554432 455555555444
No 15
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=23.96 E-value=79 Score=19.94 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHH
Q 031468 4 NASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQS 50 (159)
Q Consensus 4 n~aR~~~L~ar~~~-i~~v~~~a~~~L~~-~~~~~~~Y~~~L~~Li~e~ 50 (159)
.++=.++|++|..+ .++++.++.+.|.. |.-++...++-+..||.+.
T Consensus 13 ~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIere 61 (77)
T 3tdu_C 13 QAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKE 61 (77)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT
T ss_pred eeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhh
Confidence 34445666665433 45666666666663 6666557777777777664
No 16
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=23.04 E-value=69 Score=18.79 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=20.6
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhhccChhHHHH
Q 031468 9 KVLQAQDDLVS--NMMEAASKEVLNVSRDHNSYKK 41 (159)
Q Consensus 9 ~~L~ar~~~i~--~v~~~a~~~L~~~~~~~~~Y~~ 41 (159)
+.++||.+++. .=+++|+.+|..++.. .|+.
T Consensus 9 qEi~Aqe~iLr~ErELEeAr~~La~iR~~--kY~~ 41 (50)
T 2qdq_A 9 QIIAAQEEMLRKERELEEARKKLAQIRQQ--QYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc
Confidence 45566666654 4578899999999886 5875
No 17
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=22.52 E-value=99 Score=23.29 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhccChhHHHHHHHHHHH-----HHHHhhCCCcEEEEecc
Q 031468 4 NASRIKVLQAQDDLVSNM-------------MEAASKEVLNVSRDHNSYKKLLKGLIV-----QSLLRLKEPAVLLRCRK 65 (159)
Q Consensus 4 n~aR~~~L~ar~~~i~~v-------------~~~a~~~L~~~~~~~~~Y~~~L~~Li~-----e~~~~l~~~~v~v~~~~ 65 (159)
.++|++.=..|.+.++.+ ..+|.++|..+.... .....+..||. .++..+.++.+.|.|..
T Consensus 86 ae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~-ekE~~IE~LLKAKGF~DAVV~i~dd~V~VVVka 164 (197)
T 3tuf_A 86 TTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVE-GTEKQLETLIKTQGYEDALVNAEGDKINITVKS 164 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCSCEEEECSSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCceEEEecCCEEEEEEeC
Confidence 466777777776666544 567788888887765 78888888888 34445566656566553
No 18
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=22.17 E-value=1.2e+02 Score=22.58 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.2
Q ss_pred cccEEEEecCC----------cEEEeccHHHHHHHHHHh
Q 031468 116 SGGVVVASRDG----------KIVCENTLDARLDVVFRK 144 (159)
Q Consensus 116 ~GGviv~s~dg----------~i~vdnTle~RL~~~~~~ 144 (159)
-||+|+...+- .|.++.+++.|+++.+.+
T Consensus 145 ~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~ 183 (252)
T 4e22_A 145 APGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQ 183 (252)
T ss_dssp SSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHH
Confidence 47777766543 388999999999998764
No 19
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Probab=21.43 E-value=96 Score=25.31 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhh---------CCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCC
Q 031468 38 SYKKLLKGLIVQSLLRL---------KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH 108 (159)
Q Consensus 38 ~Y~~~L~~Li~e~~~~l---------~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~ 108 (159)
-|..+....+..++..| .++.|.+.+.|+-..-.+..+.++..- ....+..++-|+|.
T Consensus 75 ~~~~l~~~dv~~a~d~l~~~~e~~~~v~G~VS~EVdprla~D~e~~i~eA~~L-~~~i~r~nv~IKIP------------ 141 (352)
T 3clm_A 75 RYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRL-HAAIARKNAMIKVP------------ 141 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCEEEECCGGGTTCHHHHHHHHHHH-HHHHCCTTEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeccccCCCHHHHHHHHHHH-HHhcCCCCEEEEeC------------
Confidence 56655555566666653 345799999876555566777776543 33344436677775
Q ss_pred CCCCCCccccEEEEec--CCcEEEeccHHHHHH
Q 031468 109 NAHGPSCSGGVVVASR--DGKIVCENTLDARLD 139 (159)
Q Consensus 109 ~~~~~~~~GGviv~s~--dg~i~vdnTle~RL~ 139 (159)
.++-|+-.... ..+|.||-|+=-=+.
T Consensus 142 -----aT~eGi~A~~~L~~eGI~vNvTLiFS~~ 169 (352)
T 3clm_A 142 -----ATDAGIDALETLVSDGISVNLTLLFSRA 169 (352)
T ss_dssp -----CSHHHHHHHHHHHHTTCCEEEEEECCHH
T ss_pred -----CCHHHHHHHHHHHHCCCcEEEEEecCHH
Confidence 34566654332 234788887543333
No 20
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=21.28 E-value=2.2e+02 Score=22.83 Aligned_cols=34 Identities=0% Similarity=0.045 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 031468 16 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 49 (159)
Q Consensus 16 ~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 49 (159)
++.++..++|.+.|..++.++..|++.|..|+..
T Consensus 323 ~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~ 356 (362)
T 1yhl_A 323 AYEAEVVREVESLIEQLKVKSPTFAESVAVVWEK 356 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 4445555555555555555432233555555544
No 21
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=20.83 E-value=97 Score=20.10 Aligned_cols=45 Identities=13% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHH
Q 031468 5 ASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQ 49 (159)
Q Consensus 5 ~aR~~~L~ar~~~-i~~v~~~a~~~L~~-~~~~~~~Y~~~L~~Li~e 49 (159)
+|=.++|++|..+ -++++.++.+.|.. |.-++...++-+..||..
T Consensus 26 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIek 72 (88)
T 3o2p_E 26 ACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQK 72 (88)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred eeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhh
Confidence 3344555554332 24455555555553 555555666666666654
Done!