Query 031468
Match_columns 159
No_of_seqs 114 out of 521
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 23:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031468.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031468hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dm9a1 d.81.4.1 (A:81-198) V- 100.0 4E-31 2.9E-35 188.5 11.4 118 16-155 1-118 (118)
2 d1jt6a2 a.121.1.1 (A:73-187) M 46.4 18 0.0013 23.0 5.0 44 24-77 39-82 (115)
3 d1p6oa_ c.97.1.2 (A:) Cytosine 40.0 19 0.0014 24.1 4.5 40 64-130 6-45 (156)
4 d1xvxa_ c.94.1.1 (A:) Ferric-b 26.4 50 0.0036 23.4 5.2 25 56-81 3-27 (311)
5 d1xl3c1 a.243.1.1 (C:2-92) Tye 24.7 57 0.0041 20.0 4.4 29 4-32 62-90 (91)
6 d1e3ha5 d.101.1.1 (A:152-262) 20.0 35 0.0026 21.4 2.8 23 116-138 5-27 (111)
7 d2azeb1 e.63.1.2 (B:201-301) T 19.6 97 0.007 19.0 5.2 29 8-36 10-38 (101)
8 d2qn6b1 d.58.51.1 (B:176-264) 17.2 1E+02 0.0075 18.3 6.2 34 54-87 47-80 (89)
9 d1t3ua_ d.244.1.1 (A:) ZapA ho 17.0 71 0.0051 18.6 3.7 33 54-86 6-38 (92)
10 d1h3la_ a.177.1.1 (A:) Sigma f 16.8 86 0.0063 17.2 4.7 34 15-49 35-68 (75)
No 1
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.97 E-value=4e-31 Score=188.45 Aligned_cols=118 Identities=25% Similarity=0.403 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEe
Q 031468 16 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 95 (159)
Q Consensus 16 ~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~v 95 (159)
++++++|++|+++|.+++++ +|+++|++||.+|+..+++++++|+|+|+|.+++++++.++..+|+ +..+++
T Consensus 1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~------~~~~~~ 72 (118)
T d2dm9a1 1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIEL 72 (118)
T ss_dssp CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEE
T ss_pred CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC------CceeEe
Confidence 47999999999999999764 8999999999999999999999999999999999999998877665 356666
Q ss_pred cCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468 96 DHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 155 (159)
Q Consensus 96 d~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~ 155 (159)
+. | .+|.|||+|+|.||+|.|||||++||+++|++++|+|++.|||
T Consensus 73 ~~-------~-------~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG 118 (118)
T d2dm9a1 73 GE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 118 (118)
T ss_dssp CC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CC-------C-------CccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence 52 1 3899999999999999999999999999999999999999998
No 2
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=46.43 E-value=18 Score=23.01 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHH
Q 031468 24 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 77 (159)
Q Consensus 24 ~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~ 77 (159)
++.++|.++.. .|.+++..+|.+|+. +++. ++.|...+..++-.
T Consensus 39 e~~~~i~~lr~---~y~~~~~~Ii~eGi~---~G~f----~~~d~~~~~~~il~ 82 (115)
T d1jt6a2 39 SINEKMNKLEN---KYIDAYHVIFKEGNL---NGEW----SINDVNAVSKIAAN 82 (115)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHT---TTSC----CCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH---CCce----eccCHHHHHHHHHH
Confidence 55677777765 799999999999975 3333 45677777655443
No 3
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.05 E-value=19 Score=24.15 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEE
Q 031468 64 RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVC 130 (159)
Q Consensus 64 ~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~v 130 (159)
++.|...++..+..+...+.. + + .-+|+|||.+.+|+|+-
T Consensus 6 ~~~D~~~M~~A~~~A~~a~~~--g---------------~----------~PvGaviV~~~~g~Iia 45 (156)
T d1p6oa_ 6 SKWDQKGMDIAYEEAALGYKE--G---------------G----------VPIGGCLINNKDGSVLG 45 (156)
T ss_dssp CTTHHHHHHHHHHHHHHHHHT--T---------------S----------CCCEEEEEETTTCCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHc--C---------------C----------CCEEEEEEEeCCCEEEE
Confidence 567888888888877665431 0 1 12699999988999853
No 4
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}
Probab=26.38 E-value=50 Score=23.36 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=18.4
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHH
Q 031468 56 EPAVLLRCRKDDHHLVESVLESAKEE 81 (159)
Q Consensus 56 ~~~v~v~~~~~D~~~v~~~i~~~~~~ 81 (159)
+++++||+. .+.++++++++...++
T Consensus 3 ~~~lvvYs~-~~~~~~~~ii~~Fek~ 27 (311)
T d1xvxa_ 3 DSGIVVYNA-QHENLVKSWVDGFTKD 27 (311)
T ss_dssp CSCEEEEEC-SCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC-CCHHHHHHHHHHHHHh
Confidence 568999985 6678888888865554
No 5
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=24.67 E-value=57 Score=19.97 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031468 4 NASRIKVLQAQDDLVSNMMEAASKEVLNV 32 (159)
Q Consensus 4 n~aR~~~L~ar~~~i~~v~~~a~~~L~~~ 32 (159)
...|.++|.+-++.++..++.=.+.|...
T Consensus 62 ~e~R~~lL~a~Q~ALD~aI~~Eeeel~~~ 90 (91)
T d1xl3c1 62 EEQRQNLLQMCQNAIDMAIESEEEELSEL 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcc
Confidence 36799999999999999999888777653
No 6
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]}
Probab=20.02 E-value=35 Score=21.44 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=20.7
Q ss_pred cccEEEEecCCcEEEeccHHHHH
Q 031468 116 SGGVVVASRDGKIVCENTLDARL 138 (159)
Q Consensus 116 ~GGviv~s~dg~i~vdnTle~RL 138 (159)
+|||+|--.||..++|=|++.+=
T Consensus 5 vgaVRVg~idge~viNPt~~el~ 27 (111)
T d1e3ha5 5 IGGVRVALIRGQWVAFPTHTELE 27 (111)
T ss_dssp CEEEEEEEETTEEEESCCHHHHT
T ss_pred EEEEEEEEECCEEEECCCHHHHh
Confidence 79999999999999999998653
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.55 E-value=97 Score=18.99 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 031468 8 IKVLQAQDDLVSNMMEAASKEVLNVSRDH 36 (159)
Q Consensus 8 ~~~L~ar~~~i~~v~~~a~~~L~~~~~~~ 36 (159)
++-|.++++.+++....+..+|..++.++
T Consensus 10 l~~L~~~E~~LD~li~~~~~~L~~lted~ 38 (101)
T d2azeb1 10 LRQLQESEQQLDHLMNICTTQLRLLSEDT 38 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 45688999999999999999999999886
No 8
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=17.20 E-value=1e+02 Score=18.32 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=26.0
Q ss_pred hCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhC
Q 031468 54 LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQ 87 (159)
Q Consensus 54 l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~ 87 (159)
++.|.-+|.+.-.|.+...++|.++.+...+..+
T Consensus 47 igaP~Yri~v~a~D~k~ae~~l~~a~~~i~~~ik 80 (89)
T d2qn6b1 47 IGAPRYRVDVVGTNPKEASEALNQIISNLIKIGK 80 (89)
T ss_dssp SSTTEEEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778889999999999988777665443
No 9
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.02 E-value=71 Score=18.65 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=26.7
Q ss_pred hCCCcEEEEeccccHHHHHHHHHHHHHHHHHhh
Q 031468 54 LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKL 86 (159)
Q Consensus 54 l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~ 86 (159)
|.+..-.|.|.+.+.+.++++..-+...+....
T Consensus 6 I~gr~Y~i~c~~~eee~l~~aA~~ln~k~~~l~ 38 (92)
T d1t3ua_ 6 ILDKEYCINCPDDERANLESAARYLDGKMREIR 38 (92)
T ss_dssp ETTEEEEECCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEeeCCccHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999888888877654
No 10
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=16.79 E-value=86 Score=17.23 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 031468 15 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 49 (159)
Q Consensus 15 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 49 (159)
+++++++|-.+-+.+..+.... ....+|...+..
T Consensus 35 eDivQd~f~~~~~~~~~~~~~~-~~~~wl~~i~~n 68 (75)
T d1h3la_ 35 EDLVQETYAKAYASFHQFREGT-NLKAWLYRILTN 68 (75)
T ss_dssp HHHHHHHHHHHHHHGGGCCSSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHH
Confidence 5667777777777776665432 456666655544
Done!