BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031471
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA
VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLE
FFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF

High Scoring Gene Products

Symbol, full name Information P value
P93788
Remorin
protein from Solanum tuberosum 5.7e-20
AT5G23750 protein from Arabidopsis thaliana 1.8e-16
AT3G61260 protein from Arabidopsis thaliana 3.8e-14
AT2G45820 protein from Arabidopsis thaliana 4.9e-14
AT3G48940 protein from Arabidopsis thaliana 4.9e-14

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031471
        (159 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|P93788 - symbol:P93788 "Remorin" species:4113 "...   237  5.7e-20   1
TAIR|locus:2172793 - symbol:AT5G23750 "AT5G23750" species...   204  1.8e-16   1
TAIR|locus:2098921 - symbol:AT3G61260 species:3702 "Arabi...   182  3.8e-14   1
TAIR|locus:2050704 - symbol:AT2G45820 "AT2G45820" species...   181  4.9e-14   1
TAIR|locus:2101303 - symbol:AT3G48940 "AT3G48940" species...   181  4.9e-14   1


>UNIPROTKB|P93788 [details] [associations]
            symbol:P93788 "Remorin" species:4113 "Solanum tuberosum"
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0007267 "cell-cell
            signaling" evidence=NAS] [GO:0048032 "galacturonate binding"
            evidence=IDA] Pfam:PF03763 Pfam:PF03766 GO:GO:0005886 GO:GO:0006810
            GO:GO:0007267 InterPro:IPR005516 InterPro:IPR005518 EMBL:U72489
            PIR:T07780 KEGG:dosa:Os10t0503800-01 GO:GO:0048032 Uniprot:P93788
        Length = 198

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 55/83 (66%), Positives = 68/83 (81%)

Query:    37 VADDKTVI-PS--PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARV 90
             VAD+K ++ P+  PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV
Sbjct:    29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARV 84

Query:    91 ETEKRISLIRAWEESEKSQAENK 113
              TEKR+SLI+AWEESEKS+AENK
Sbjct:    85 ATEKRVSLIKAWEESEKSKAENK 107


>TAIR|locus:2172793 [details] [associations]
            symbol:AT5G23750 "AT5G23750" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0042546 "cell wall biogenesis" evidence=RCA]
            Pfam:PF03763 Pfam:PF03766 EMBL:CP002688 EMBL:AB005244
            InterPro:IPR005516 InterPro:IPR005518 EMBL:AF387006 EMBL:BT000016
            IPI:IPI00519664 RefSeq:NP_197764.1 UniGene:At.22829 IntAct:Q9FFA5
            PRIDE:Q9FFA5 EnsemblPlants:AT5G23750.1 GeneID:832440
            KEGG:ath:AT5G23750 TAIR:At5g23750 InParanoid:Q9FFA5 OMA:CKVENKA
            PhylomeDB:Q9FFA5 ProtClustDB:CLSN2686297 ArrayExpress:Q9FFA5
            Genevestigator:Q9FFA5 Uniprot:Q9FFA5
        Length = 202

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query:    43 VIPSP-PAEDKPEESKALA-VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             V+PSP PAE+K E+SKA+  VV K  E E    E+  EGSVNRDAVLARVETEKR+SLI+
Sbjct:    45 VLPSPAPAEEKQEDSKAIVPVVPK--EVE----EEKKEGSVNRDAVLARVETEKRMSLIK 98

Query:   101 AWEESEKSQAENK 113
             AWEE+EK + ENK
Sbjct:    99 AWEEAEKCKVENK 111


>TAIR|locus:2098921 [details] [associations]
            symbol:AT3G61260 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0005773 "vacuole" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] Pfam:PF03763 Pfam:PF03766 GO:GO:0005886
            GO:GO:0009506 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AL137898 HOGENOM:HOG000239299 ProtClustDB:CLSN2683444
            InterPro:IPR005516 InterPro:IPR005518 EMBL:AF370346 EMBL:AY062977
            EMBL:AY088061 IPI:IPI00539947 PIR:T47918 RefSeq:NP_191685.1
            UniGene:At.21524 IntAct:Q9M2D8 STRING:Q9M2D8 PaxDb:Q9M2D8
            PRIDE:Q9M2D8 EnsemblPlants:AT3G61260.1 GeneID:825298
            KEGG:ath:AT3G61260 TAIR:At3g61260 eggNOG:NOG252013
            InParanoid:Q9M2D8 OMA:IADVHAW PhylomeDB:Q9M2D8
            Genevestigator:Q9M2D8 Uniprot:Q9M2D8
        Length = 212

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             DVA++K  I +PP E   ++SKAL VV+K P  E PA  K    S++RD  LA +  EKR
Sbjct:    48 DVAEEK--IQNPPPEQIFDDSKALTVVEK-P-VEEPAPAKPASASLDRDVKLADLSKEKR 103

Query:    96 ISLIRAWEESEKSQAENK 113
             +S +RAWEESEKS+AENK
Sbjct:   104 LSFVRAWEESEKSKAENK 121


>TAIR|locus:2050704 [details] [associations]
            symbol:AT2G45820 "AT2G45820" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005515 "protein binding"
            evidence=IPI] Pfam:PF03763 Pfam:PF03766 GO:GO:0005886 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC004665 EMBL:M25268 EMBL:AY045996
            EMBL:AY079329 IPI:IPI00539171 PIR:T02465 RefSeq:NP_182106.1
            UniGene:At.24530 IntAct:O80837 STRING:O80837 PaxDb:O80837
            PRIDE:O80837 ProMEX:O80837 EnsemblPlants:AT2G45820.1 GeneID:819190
            KEGG:ath:AT2G45820 TAIR:At2g45820 eggNOG:NOG288404
            HOGENOM:HOG000239299 InParanoid:O80837 OMA:AILSWEN PhylomeDB:O80837
            ProtClustDB:CLSN2683444 Genevestigator:O80837 InterPro:IPR005516
            InterPro:IPR005518 Uniprot:O80837
        Length = 190

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/78 (53%), Positives = 56/78 (71%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+
Sbjct:    30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKK 81

Query:    96 ISLIRAWEESEKSQAENK 113
              S I+AWEESEKS+AEN+
Sbjct:    82 TSFIKAWEESEKSKAENR 99


>TAIR|locus:2101303 [details] [associations]
            symbol:AT3G48940 "AT3G48940" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0048765 "root hair cell differentiation"
            evidence=RCA] Pfam:PF03763 Pfam:PF03766 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AL132967 HOGENOM:HOG000239299
            InterPro:IPR005516 InterPro:IPR005518 IPI:IPI00526150 PIR:T46136
            RefSeq:NP_190463.1 UniGene:At.53841 EnsemblPlants:AT3G48940.1
            GeneID:824055 KEGG:ath:AT3G48940 TAIR:At3g48940 eggNOG:NOG272280
            InParanoid:Q9SMT2 OMA:GAWENSK PhylomeDB:Q9SMT2
            ProtClustDB:CLSN2913484 Genevestigator:Q9SMT2 Uniprot:Q9SMT2
        Length = 175

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query:    45 PSPPA-EDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
             PSPP+ E+K ++SKA+ +V  A E   P  +K   GSV+RDAVL R+E +KRISLI+AWE
Sbjct:    19 PSPPSKEEKSDDSKAIVLVVAAKE---PTEDKKV-GSVHRDAVLVRLEQDKRISLIKAWE 74

Query:   104 ESEKSQAENK 113
             E+EKS+ ENK
Sbjct:    75 EAEKSKVENK 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       106   0.00091  102 3  11 23  0.36    31
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.88u 0.15s 15.03t   Elapsed:  00:00:01
  Total cpu time:  14.88u 0.15s 15.03t   Elapsed:  00:00:01
  Start:  Sat May 11 03:18:17 2013   End:  Sat May 11 03:18:18 2013

Back to top