BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031471
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
          Length = 1150

 Score = 30.4 bits (67), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 128 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 186

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 187 AKSEAEKS 194


>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
          Length = 1150

 Score = 30.4 bits (67), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 128 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 186

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 187 AKSEAEKS 194


>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
          Length = 1150

 Score = 30.4 bits (67), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 128 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 186

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 187 AKSEAEKS 194


>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 30.4 bits (67), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 151 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 209

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 210 AKSEAEKS 217


>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 30.4 bits (67), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 151 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 209

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 210 AKSEAEKS 217


>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 30.4 bits (67), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 151 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 209

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 210 AKSEAEKS 217


>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 30.0 bits (66), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  KTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
           K  +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  R
Sbjct: 151 KADLPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 209

Query: 101 AWEESEKS 108
           A  E+EKS
Sbjct: 210 AKSEAEKS 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,959,796
Number of Sequences: 62578
Number of extensions: 91548
Number of successful extensions: 168
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 12
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)