Query 031471
Match_columns 159
No_of_seqs 68 out of 70
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 14:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03766 Remorin_N: Remorin, N 99.7 6.1E-17 1.3E-21 112.2 4.1 53 35-90 5-57 (57)
2 PF03763 Remorin_C: Remorin, C 98.3 3.3E-07 7.1E-12 69.3 3.1 37 92-128 2-38 (111)
3 PF08078 PsaX: PsaX family; I 91.7 0.16 3.4E-06 33.2 2.3 18 139-156 17-34 (37)
4 PF15102 TMEM154: TMEM154 prot 73.7 2.3 5E-05 34.5 1.9 28 130-158 58-85 (146)
5 PF03763 Remorin_C: Remorin, C 72.2 4.7 0.0001 30.7 3.2 29 92-120 24-52 (111)
6 PF04277 OAD_gamma: Oxaloaceta 69.2 7.3 0.00016 26.5 3.3 25 135-159 12-36 (79)
7 PRK09174 F0F1 ATP synthase sub 59.4 6.1 0.00013 32.4 1.8 15 144-158 58-72 (204)
8 PF02932 Neur_chan_memb: Neuro 57.6 13 0.00029 25.8 2.9 23 132-154 60-82 (237)
9 PRK10633 hypothetical protein; 53.0 16 0.00035 26.9 2.9 32 126-158 40-71 (80)
10 PF12856 Apc9: Anaphase-promot 51.1 11 0.00023 28.8 1.7 15 94-108 44-58 (100)
11 PF14851 FAM176: FAM176 family 50.9 8.6 0.00019 31.2 1.3 25 125-149 17-41 (153)
12 PF06667 PspB: Phage shock pro 43.8 30 0.00066 25.1 3.1 30 128-158 1-30 (75)
13 PF05283 MGC-24: Multi-glycosy 41.6 26 0.00056 29.2 2.7 22 133-154 162-183 (186)
14 PF06196 DUF997: Protein of un 41.4 33 0.00071 24.9 2.9 27 132-158 45-71 (80)
15 PF07352 Phage_Mu_Gam: Bacteri 40.0 59 0.0013 25.0 4.3 45 81-125 15-59 (149)
16 PF03250 Tropomodulin: Tropomo 37.9 40 0.00087 27.5 3.3 32 72-105 55-86 (147)
17 PF08391 Ly49: Ly49-like prote 34.5 19 0.00042 28.1 0.9 8 126-133 112-119 (119)
18 TIGR01195 oadG_fam sodium pump 34.2 62 0.0014 23.3 3.4 26 134-159 14-39 (82)
19 PF06643 DUF1158: Protein of u 32.5 24 0.00053 26.5 1.1 32 127-159 46-77 (82)
20 PF02453 Reticulon: Reticulon; 30.9 19 0.00041 26.6 0.3 45 111-155 93-137 (169)
21 KOG4433 Tweety transmembrane/c 30.1 58 0.0013 31.4 3.4 24 134-157 45-68 (526)
22 KOG4684 Uncharacterized conser 29.3 30 0.00064 30.7 1.3 31 115-145 195-225 (275)
23 PF03929 PepSY_TM: PepSY-assoc 29.0 95 0.0021 18.5 3.1 19 133-151 7-25 (27)
24 PF06459 RR_TM4-6: Ryanodine R 28.5 63 0.0014 28.2 3.2 12 143-154 180-191 (274)
25 KOG1725 Protein involved in me 26.6 89 0.0019 26.2 3.6 40 117-156 24-66 (186)
26 PF08513 LisH: LisH; InterPro 26.0 53 0.0011 19.1 1.6 11 147-157 3-13 (27)
27 PF10577 UPF0560: Uncharacteri 25.8 53 0.0012 33.1 2.5 26 133-158 273-299 (807)
28 PF08928 DUF1910: Domain of un 25.6 58 0.0012 23.5 2.1 21 123-144 83-103 (117)
29 smart00667 LisH Lissencephaly 24.8 56 0.0012 17.7 1.5 13 146-158 5-17 (34)
30 PF05568 ASFV_J13L: African sw 24.7 71 0.0015 27.0 2.7 20 138-157 34-53 (189)
31 PRK02251 putative septation in 24.1 83 0.0018 23.6 2.7 19 138-156 37-55 (87)
32 PRK00159 putative septation in 23.7 86 0.0019 23.6 2.7 19 138-156 36-54 (87)
33 COG3924 Predicted membrane pro 23.5 43 0.00093 25.1 1.1 19 141-159 49-67 (80)
34 PF05933 Fun_ATP-synt_8: Funga 22.2 1.1E+02 0.0023 20.9 2.7 21 132-152 7-27 (48)
35 PF06781 UPF0233: Uncharacteri 22.0 84 0.0018 23.4 2.4 28 128-157 28-55 (87)
No 1
>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=99.66 E-value=6.1e-17 Score=112.19 Aligned_cols=53 Identities=62% Similarity=0.965 Sum_probs=46.5
Q ss_pred CCccccCCCCCCCCCCCCCccCcceeeeecCCCCCCCCCCCCCCCchhHHHHHHHH
Q 031471 35 KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV 90 (159)
Q Consensus 35 kdVaEEKaviP~P~~e~~~ddSKAlvvVek~~~~~~~~~~k~~~gs~dRDa~LArV 90 (159)
+|++++|+++|||. +++.||||||++|+|..+. ++.+|+++||+|||++||||
T Consensus 5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e--pa~eK~s~GS~dRDa~LA~v 57 (57)
T PF03766_consen 5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE--PAEEKPSEGSIDRDAALARV 57 (57)
T ss_pred hhhccccCCCCCCC-CCCCCccceEEEeeccCCC--ccccccCCCcchhhhhhhcC
Confidence 89999999988775 6788999999999986332 88899999999999999986
No 2
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=98.35 E-value=3.3e-07 Score=69.32 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHhhhhhhhhhhhcCC
Q 031471 92 TEKRISLIRAWEESEKSQAENKLRASFLEFFFFFFGL 128 (159)
Q Consensus 92 ~EKrlSlIKAWEEsEKaKaeNKa~Kkls~I~sWE~~~ 128 (159)
.+++.+.|.|||++|++|+.||++++++.|++|||..
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~q 38 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQ 38 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4678999999999999999999999999999999864
No 3
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=91.73 E-value=0.16 Score=33.25 Aligned_cols=18 Identities=61% Similarity=0.827 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031471 139 TLALLLLSINFLVLNYIC 156 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~ 156 (159)
.-++|||.|||||--|..
T Consensus 17 ~Wa~llLaINflVAayYF 34 (37)
T PF08078_consen 17 GWALLLLAINFLVAAYYF 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 357899999999988753
No 4
>PF15102 TMEM154: TMEM154 protein family
Probab=73.73 E-value=2.3 Score=34.45 Aligned_cols=28 Identities=43% Similarity=0.574 Sum_probs=21.7
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 130 CYYYFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
-.|+.+-.|.|+||||++-||+.-| +||
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~-kRk 85 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYY-KRK 85 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEE-eec
Confidence 5667777799999999998887655 554
No 5
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=72.17 E-value=4.7 Score=30.68 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHhhhhhh
Q 031471 92 TEKRISLIRAWEESEKSQAENKLRASFLE 120 (159)
Q Consensus 92 ~EKrlSlIKAWEEsEKaKaeNKa~Kkls~ 120 (159)
-++..+-|.+||..+|+|++-+-.|....
T Consensus 24 ~~ree~~I~aWEn~qkaKaea~m~k~E~k 52 (111)
T PF03763_consen 24 YEREEAKIQAWENLQKAKAEAEMRKIEEK 52 (111)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999999998776665443
No 6
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=69.19 E-value=7.3 Score=26.52 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC
Q 031471 135 VSCVTLALLLLSINFLVLNYICRKF 159 (159)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (159)
.+.|.+.|++|++-+-++.+++++|
T Consensus 12 m~iVF~~L~lL~~~i~l~~~~~~~~ 36 (79)
T PF04277_consen 12 MGIVFLVLILLILVISLMSKLIRKF 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888888888888888764
No 7
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=59.44 E-value=6.1 Score=32.40 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhc
Q 031471 144 LLSINFLVLNYICRK 158 (159)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (159)
.+.|||++|-+|+.|
T Consensus 58 w~~I~FliL~~lL~k 72 (204)
T PRK09174 58 WLAITFGLFYLFMSR 72 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 8
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=57.64 E-value=13 Score=25.76 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=11.6
Q ss_pred eehhHHHHHHHHHHHHHHHHHHH
Q 031471 132 YYFVSCVTLALLLLSINFLVLNY 154 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
|||+.++.+..+++.+.++++|+
T Consensus 60 ~~~~~~~~v~~~~~~~avv~~~~ 82 (237)
T PF02932_consen 60 WYFICTMFVFSASLEFAVVVYNI 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhHHHHhhhhhhhh
Confidence 34544455544555555555554
No 9
>PRK10633 hypothetical protein; Provisional
Probab=53.01 E-value=16 Score=26.90 Aligned_cols=32 Identities=28% Similarity=0.703 Sum_probs=23.8
Q ss_pred cCCceeeehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 126 FGLNCYYYFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
.||.. ++|.||+.+-+++..+-+++++++-|.
T Consensus 40 ~GlP~-WF~~sCi~~p~lfi~l~~~~Vk~vFkD 71 (80)
T PRK10633 40 TGLPH-WFEMACLLLPLLFILLCWLMVKFIFRD 71 (80)
T ss_pred cCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44443 467899998888888888888887664
No 10
>PF12856 Apc9: Anaphase-promoting complex subunit 9; InterPro: IPR024274 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=51.14 E-value=11 Score=28.81 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhh
Q 031471 94 KRISLIRAWEESEKS 108 (159)
Q Consensus 94 KrlSlIKAWEEsEKa 108 (159)
-|.|.|++||.+|++
T Consensus 44 l~eSkI~~~l~sEra 58 (100)
T PF12856_consen 44 LRESKIKAWLSSERA 58 (100)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999999999985
No 11
>PF14851 FAM176: FAM176 family
Probab=50.92 E-value=8.6 Score=31.16 Aligned_cols=25 Identities=32% Similarity=0.167 Sum_probs=17.2
Q ss_pred hcCCceeeehhHHHHHHHHHHHHHH
Q 031471 125 FFGLNCYYYFVSCVTLALLLLSINF 149 (159)
Q Consensus 125 E~~~~~~~~~~~~~~~~~~~~~~~~ 149 (159)
.|-=..+.|||++|.++|||+..-+
T Consensus 17 ~~PE~~aLYFv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 17 DNPERFALYFVSGVCAGLLLTLCLL 41 (153)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444457799999988887765433
No 12
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.82 E-value=30 Score=25.08 Aligned_cols=30 Identities=10% Similarity=0.397 Sum_probs=20.3
Q ss_pred CceeeehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 128 LNCYYYFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
|+ ++++.--+++.+++.+.-.|+|.|+-++
T Consensus 1 M~-~~fl~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 1 MS-FEFLFVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 4444455566677778888999998653
No 13
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=41.61 E-value=26 Score=29.22 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHHH
Q 031471 133 YFVSCVTLALLLLSINFLVLNY 154 (159)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
-||..+.|.|.||+|-|+++.|
T Consensus 162 SFiGGIVL~LGv~aI~ff~~KF 183 (186)
T PF05283_consen 162 SFIGGIVLTLGVLAIIFFLYKF 183 (186)
T ss_pred hhhhHHHHHHHHHHHHHHHhhh
Confidence 4889999999999999988765
No 14
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=41.41 E-value=33 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.709 Sum_probs=19.7
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 132 YYFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
++|.||+.+-+++..+-++++.++-+.
T Consensus 45 WF~~SCi~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 45 WFFYSCIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357899988777777777777776553
No 15
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=39.98 E-value=59 Score=24.95 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHhhhhhhhhhhh
Q 031471 81 VNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEFFFFF 125 (159)
Q Consensus 81 ~dRDa~LArVe~EKrlSlIKAWEEsEKaKaeNKa~Kkls~I~sWE 125 (159)
++|...--......+...|+.|-+.+.....++-..-.+.|..|.
T Consensus 15 l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~ 59 (149)
T PF07352_consen 15 LQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYA 59 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544445556778899999999999999999888888888774
No 16
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=37.88 E-value=40 Score=27.54 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 031471 72 AGEKSTEGSVNRDAVLARVETEKRISLIRAWEES 105 (159)
Q Consensus 72 ~~~k~~~gs~dRDa~LArVe~EKrlSlIKAWEEs 105 (159)
..+|...|..|||++|.-++.+- .-.+-||+.
T Consensus 55 QT~K~pTG~fdRe~Ll~~lekea--~~~~dre~~ 86 (147)
T PF03250_consen 55 QTEKPPTGPFDREALLDYLEKEA--KELKDREDL 86 (147)
T ss_pred ccCCCCCCCcCHHHHHHHHHHHH--HHHHhhhcc
Confidence 44677899999999999997554 445677774
No 17
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=34.52 E-value=19 Score=28.05 Aligned_cols=8 Identities=50% Similarity=1.933 Sum_probs=6.3
Q ss_pred cCCceeee
Q 031471 126 FGLNCYYY 133 (159)
Q Consensus 126 ~~~~~~~~ 133 (159)
-|.|||||
T Consensus 112 yg~kCYYF 119 (119)
T PF08391_consen 112 YGVKCYYF 119 (119)
T ss_dssp ETTEEEEE
T ss_pred eCceeeeC
Confidence 47899886
No 18
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=34.15 E-value=62 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.039 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcC
Q 031471 134 FVSCVTLALLLLSINFLVLNYICRKF 159 (159)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (159)
-.++|.+.|++|.+-+-++..++++|
T Consensus 14 GM~~VF~fL~lLi~~i~~~~~~~~~~ 39 (82)
T TIGR01195 14 GMGIVFLFLSLLIYAVRGMGKVVGRK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566666666666666666776654
No 19
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=32.50 E-value=24 Score=26.47 Aligned_cols=32 Identities=38% Similarity=0.751 Sum_probs=25.4
Q ss_pred CCceeeehhHHHHHHHHHHHHHHHHHHHhhhcC
Q 031471 127 GLNCYYYFVSCVTLALLLLSINFLVLNYICRKF 159 (159)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (159)
.+|-.|-.+-|+-. |+|-.|.|+|+.+|-|++
T Consensus 46 DlnQlYTl~FClWF-LlLGaiEy~viRfiwrRw 77 (82)
T PF06643_consen 46 DLNQLYTLVFCLWF-LLLGAIEYFVIRFIWRRW 77 (82)
T ss_pred hHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 46778888888754 567789999999998864
No 20
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=30.88 E-value=19 Score=26.58 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=15.4
Q ss_pred hHHHhhhhhhhhhhhcCCceeeehhHHHHHHHHHHHHHHHHHHHh
Q 031471 111 ENKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYI 155 (159)
Q Consensus 111 eNKa~Kkls~I~sWE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
=|.....+.++..|++.+.+.-.++.+..++.+.-.+|++.|-|+
T Consensus 93 ~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l 137 (169)
T PF02453_consen 93 INSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYL 137 (169)
T ss_dssp CCHHHHHHHCCCHCT-TTGGG------------------------
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 356667788888999888777777666666666666776666554
No 21
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=30.09 E-value=58 Score=31.41 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q 031471 134 FVSCVTLALLLLSINFLVLNYICR 157 (159)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
++.|+..++|+|++-||++-.|||
T Consensus 45 lla~l~aa~l~l~Ll~ll~yli~~ 68 (526)
T KOG4433|consen 45 LLAALAAACLGLSLLFLLFYLICR 68 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999999986
No 22
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=29.27 E-value=30 Score=30.71 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=24.6
Q ss_pred hhhhhhhhhhhcCCceeeehhHHHHHHHHHH
Q 031471 115 RASFLEFFFFFFGLNCYYYFVSCVTLALLLL 145 (159)
Q Consensus 115 ~Kkls~I~sWE~~~~~~~~~~~~~~~~~~~~ 145 (159)
-||.|+|++-+++-.|..+|+-..+++++-.
T Consensus 195 CrKvSsvGsrfar~Ra~~ffilal~~avta~ 225 (275)
T KOG4684|consen 195 CRKVSSVGSRFARRRALLFFILALTVAVTAV 225 (275)
T ss_pred ccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Confidence 4789999999999999888877666665443
No 23
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=29.03 E-value=95 Score=18.52 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=12.6
Q ss_pred ehhHHHHHHHHHHHHHHHH
Q 031471 133 YFVSCVTLALLLLSINFLV 151 (159)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~ 151 (159)
||+-.+.+++++++|.-++
T Consensus 7 w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLI 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666677777777766554
No 24
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=28.52 E-value=63 Score=28.18 Aligned_cols=12 Identities=50% Similarity=0.944 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 031471 143 LLLSINFLVLNY 154 (159)
Q Consensus 143 ~~~~~~~~~~~~ 154 (159)
|-+.|||+.|-|
T Consensus 180 lAFaINFILLFY 191 (274)
T PF06459_consen 180 LAFAINFILLFY 191 (274)
T ss_pred HHHHHHHHHHHH
Confidence 346899999988
No 25
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.59 E-value=89 Score=26.21 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=26.2
Q ss_pred hhhhhhhhhcCCceeeehhHHHHHHHHHH---HHHHHHHHHhh
Q 031471 117 SFLEFFFFFFGLNCYYYFVSCVTLALLLL---SINFLVLNYIC 156 (159)
Q Consensus 117 kls~I~sWE~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 156 (159)
..-....|.+|.---|-|...+.|.+++| ++-+|+.|+||
T Consensus 24 ~~f~~~E~~tgv~r~~~~~g~~~l~~v~l~~g~~~~l~cn~ig 66 (186)
T KOG1725|consen 24 GIFDQLEKFTGVPREYVFAGAILLLAVYLLFGSGGPLLCNLIG 66 (186)
T ss_pred HHHHHHHHhhCCchhhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34556778888877776666655444444 44578888886
No 26
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=25.96 E-value=53 Score=19.06 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=9.1
Q ss_pred HHHHHHHHhhh
Q 031471 147 INFLVLNYICR 157 (159)
Q Consensus 147 ~~~~~~~~~~~ 157 (159)
||.||++|+.+
T Consensus 3 Ln~lI~~YL~~ 13 (27)
T PF08513_consen 3 LNQLIYDYLVE 13 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78899999865
No 27
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=25.75 E-value=53 Score=33.12 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=14.6
Q ss_pred ehhHH-HHHHHHHHHHHHHHHHHhhhc
Q 031471 133 YFVSC-VTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (159)
+|... +.-.+|++.|-|.||-|.||.
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34333 333344444556678888985
No 28
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=25.60 E-value=58 Score=23.53 Aligned_cols=21 Identities=24% Similarity=0.459 Sum_probs=11.6
Q ss_pred hhhcCCceeeehhHHHHHHHHH
Q 031471 123 FFFFGLNCYYYFVSCVTLALLL 144 (159)
Q Consensus 123 sWE~~~~~~~~~~~~~~~~~~~ 144 (159)
.|+.+ +-|.+.+-.+.|++||
T Consensus 83 ~~~~~-~~Y~~~lwllsLgiLL 103 (117)
T PF08928_consen 83 IWDEN-DGYIYMLWLLSLGILL 103 (117)
T ss_pred hccCC-chHHHHHHHHHHHHHH
Confidence 67666 4455555555555543
No 29
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=24.85 E-value=56 Score=17.74 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhc
Q 031471 146 SINFLVLNYICRK 158 (159)
Q Consensus 146 ~~~~~~~~~~~~~ 158 (159)
.+|.+|++|+.+.
T Consensus 5 ~l~~lI~~yL~~~ 17 (34)
T smart00667 5 ELNRLILEYLLRN 17 (34)
T ss_pred HHHHHHHHHHHHc
Confidence 3677888887753
No 30
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=24.69 E-value=71 Score=26.99 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 031471 138 VTLALLLLSINFLVLNYICR 157 (159)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (159)
+.+++.+|.|-|+||-|+|.
T Consensus 34 ILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677888899999999994
No 31
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=24.11 E-value=83 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 031471 138 VTLALLLLSINFLVLNYIC 156 (159)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (159)
+.++|+++.+-.||.+||.
T Consensus 37 ~m~~lm~~Gl~WlvvyYl~ 55 (87)
T PRK02251 37 LFVALMIIGLIWLVVYYLS 55 (87)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4566777788888888874
No 32
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=23.66 E-value=86 Score=23.60 Aligned_cols=19 Identities=37% Similarity=0.875 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 031471 138 VTLALLLLSINFLVLNYIC 156 (159)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (159)
+.++|+++.+-.+|.+||.
T Consensus 36 ~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 36 LMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4567777788888888875
No 33
>COG3924 Predicted membrane protein [Function unknown]
Probab=23.52 E-value=43 Score=25.13 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q 031471 141 ALLLLSINFLVLNYICRKF 159 (159)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ 159 (159)
+-++|-|-|.++-|+|-||
T Consensus 49 aCi~lPllFi~l~~~mvkf 67 (80)
T COG3924 49 ACILLPLLFIVLCWAMVKF 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666554
No 34
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=22.15 E-value=1.1e+02 Score=20.92 Aligned_cols=21 Identities=33% Similarity=0.784 Sum_probs=15.7
Q ss_pred eehhHHHHHHHHHHHHHHHHH
Q 031471 132 YYFVSCVTLALLLLSINFLVL 152 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (159)
+||+.-++.+++++++...+.
T Consensus 7 FyF~Nql~~~f~~l~il~yl~ 27 (48)
T PF05933_consen 7 FYFVNQLSFGFLILSILLYLF 27 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888887765443
No 35
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.03 E-value=84 Score=23.43 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=18.3
Q ss_pred CceeeehhHHHHHHHHHHHHHHHHHHHhhh
Q 031471 128 LNCYYYFVSCVTLALLLLSINFLVLNYICR 157 (159)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
.|--+|-. +.++|+++.+-.+|.+||..
T Consensus 28 ~sp~W~~p--~m~~lmllGL~WiVvyYi~~ 55 (87)
T PF06781_consen 28 PSPRWYAP--LMLGLMLLGLLWIVVYYISG 55 (87)
T ss_pred CCCccHHH--HHHHHHHHHHHHHhhhhccc
Confidence 34444433 45667778888889999854
Done!