Query 031471
Match_columns 159
No_of_seqs 68 out of 70
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 23:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_X Photosystem I subunit P 93.5 0.041 1.4E-06 34.6 2.3 18 139-156 14-31 (35)
2 1b9u_A Protein (ATP synthase); 66.7 2.8 9.6E-05 24.2 1.6 18 142-159 7-24 (34)
3 3sjd_D Golgi to ER traffic pro 33.9 39 0.0013 22.2 3.1 37 78-124 10-46 (46)
4 1vry_A Glycine receptor alpha- 33.8 26 0.0009 24.3 2.5 25 133-158 38-62 (76)
5 2bg9_B Acetylcholine receptor 22.7 65 0.0022 26.5 3.4 27 132-158 273-299 (370)
6 2bg9_C Acetylcholine receptor 21.4 68 0.0023 26.4 3.2 27 132-158 275-301 (369)
7 2p2u_A HOST-nuclease inhibitor 19.7 1.4E+02 0.0049 22.6 4.6 33 93-125 40-72 (171)
8 1oed_E Acetylcholine receptor 19.1 87 0.003 25.4 3.4 26 132-157 67-92 (260)
9 1oed_B Acetylcholine receptor 17.6 1E+02 0.0036 24.8 3.5 26 132-157 66-91 (250)
10 2bg9_E Acetylcholine receptor 17.2 86 0.003 25.7 3.0 26 132-157 277-302 (370)
No 1
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=93.52 E-value=0.041 Score=34.64 Aligned_cols=18 Identities=56% Similarity=0.766 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031471 139 TLALLLLSINFLVLNYIC 156 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~ 156 (159)
.-+||||+|||||--|..
T Consensus 14 ~WalllLaINflVAayYF 31 (35)
T 1jb0_X 14 FWAVLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357799999999988753
No 2
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=66.68 E-value=2.8 Score=24.23 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 031471 142 LLLLSINFLVLNYICRKF 159 (159)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~ 159 (159)
++.-.|||+++-++++||
T Consensus 7 l~~~~i~Flil~~~l~kf 24 (34)
T 1b9u_A 7 ILGQAIAFVLFVLFCMKY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567999999999886
No 3
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=33.94 E-value=39 Score=22.18 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=22.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHhhhhhhhhhh
Q 031471 78 EGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEFFFF 124 (159)
Q Consensus 78 ~gs~dRDa~LArVe~EKrlSlIKAWEEsEKaKaeNKa~Kkls~I~sW 124 (159)
-||--++.--+|+-.|+|.+-|++ ..+..+|..|+.|
T Consensus 10 ~~~~lsa~EkaRLrRERR~aKi~~----------G~assRLNkItg~ 46 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQKKFSN----------GGASSRLNKITGW 46 (46)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH----------HTHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHHHHHHHc----------cchHHHHHHHhcC
Confidence 456666777788888988876653 3366778888888
No 4
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=33.85 E-value=26 Score=24.34 Aligned_cols=25 Identities=16% Similarity=0.606 Sum_probs=15.7
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 133 YFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
|+..|.++.++. .+-|.+.||+.|+
T Consensus 38 w~~~C~~FVF~a-LlEya~V~y~~r~ 62 (76)
T 1vry_A 38 WLAVCLLFVFSA-LLEYAAVNFVSRK 62 (76)
T ss_dssp THHHHHHHHHHH-HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 556666554433 3678888998764
No 5
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=22.71 E-value=65 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=18.5
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 132 YYFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
.||..|.++..+.+....+|+|+..|.
T Consensus 273 ~~~~~~~~~v~~sll~~v~v~~~~~r~ 299 (370)
T 2bg9_B 273 SYLMFIMILVAFSVILSVVVLNLHHRS 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 466777776666666667788887663
No 6
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=21.37 E-value=68 Score=26.35 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=17.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHhhhc
Q 031471 132 YYFVSCVTLALLLLSINFLVLNYICRK 158 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
.||..|.++..+.+....+|+|+..|.
T Consensus 275 ~~~~~~~~~v~~sll~~v~v~~~~~r~ 301 (369)
T 2bg9_C 275 KYLMFIMSLVTGVVVNCGIVLNFHFRT 301 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhheeeeeccC
Confidence 366677666666665666788887653
No 7
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=19.69 E-value=1.4e+02 Score=22.63 Aligned_cols=33 Identities=9% Similarity=-0.013 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHhhhhhhhhhhh
Q 031471 93 EKRISLIRAWEESEKSQAENKLRASFLEFFFFF 125 (159)
Q Consensus 93 EKrlSlIKAWEEsEKaKaeNKa~Kkls~I~sWE 125 (159)
......|+.|...+-....|+...-.+.|..|.
T Consensus 40 n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~ 72 (171)
T 2p2u_A 40 NEAIDAAKARASQKSAPLLARRKELEDGVATFA 72 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677999999998888888888888888875
No 8
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=19.07 E-value=87 Score=25.42 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=17.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHhhh
Q 031471 132 YYFVSCVTLALLLLSINFLVLNYICR 157 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
.||..|..+..+.+....+|+|+..|
T Consensus 67 ~y~~~~m~~v~~sl~~tv~vln~~~r 92 (260)
T 1oed_E 67 KYLIFVMFVSMLIVMNCVIVLNVSLR 92 (260)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheeeeecc
Confidence 45666776666666667778888755
No 9
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=17.58 E-value=1e+02 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.6
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHhhh
Q 031471 132 YYFVSCVTLALLLLSINFLVLNYICR 157 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
.||..|..+..+.+....+|+|+..|
T Consensus 66 ~y~~~~m~~v~~sl~~tv~Vln~~~r 91 (250)
T 1oed_B 66 RYLMFIMILVAFSVILSVVVLNLHHR 91 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhheeeeecc
Confidence 45666766666666667778887655
No 10
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=17.25 E-value=86 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=17.2
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHhhh
Q 031471 132 YYFVSCVTLALLLLSINFLVLNYICR 157 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
.||..|.++..+.+....+|+|+..|
T Consensus 277 ~~~~~~~~~v~~sll~~v~v~~~~~r 302 (370)
T 2bg9_E 277 KYLIFVMFVSLVIVTNCVIVLNVSLR 302 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhheeeecc
Confidence 45667776666666666677787655
Done!