RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031473
         (159 letters)



>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 101

 Score = 99.8 bits (249), Expect = 1e-28
 Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 1/96 (1%)

Query: 13  WKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGH-EGGIFTVE 71
             + +GD V++  GK KG  G +K V+  +  VIVEG N+VKK ++    + +GG    E
Sbjct: 4   MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKE 63

Query: 72  APIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 107
           AP+HAS V+ + P  GKP +V  K+LE+G K+RV  
Sbjct: 64  APLHASKVRPICPACGKPTRVRKKFLENGKKIRVCA 99


>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
           {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 94.4 bits (235), Expect = 1e-26
 Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 4/96 (4%)

Query: 14  KILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGG--EGHEGGIFTVE 71
           KI R D V+++ GKDKG+ G +K V+    +VIVEG NLVKKH K        GGI   E
Sbjct: 1   KIRRDDEVIVLTGKDKGKRGKVKNVLS-SGKVIVEGINLVKKHQKPVPALNQPGGIVEKE 59

Query: 72  APIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 107
           A I  SNV + +  TGK  +VG ++ EDG KVR  +
Sbjct: 60  AAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFK 94


>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 110

 Score = 92.9 bits (231), Expect = 5e-26
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 13  WKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGG-EGHEGGIFTVE 71
               +GD V+++ GK KG+TG +   +    +V+VEG N++ K++K      +GG    E
Sbjct: 11  LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRE 70

Query: 72  APIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 107
             +HAS V ++DP TGK  +V  +   DG KVRVA 
Sbjct: 71  LALHASKVALVDPETGKATRVRKQI-VDGKKVRVAV 105


>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 79.4 bits (196), Expect = 1e-20
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 10  IRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFT 69
            R+ ++  GD V ++RG   GE G +  V   +  + VE   L K   +           
Sbjct: 37  QRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE----------E 86

Query: 70  VEAPIHASNVQVLDPVTGKPCKVGTKYLEDGT 101
           V  P+  SNV+V D       +      ED +
Sbjct: 87  VPRPLDTSNVRVTDLDLEDEKREARLESEDDS 118


>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 29.6 bits (67), Expect = 0.034
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 6  AEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47
          A++L +++K+  GD+V +I G+ +G+TG I RV   +N VI+
Sbjct: 4  AQELRKYFKM--GDHVKVIAGRFEGDTGLIVRV--EENFVIL 41


>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
          NusG, C-terminal domain {Aquifex aeolicus [TaxId:
          63363]}
          Length = 58

 Score = 24.5 bits (54), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 18 GDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47
          GD V +I G     TG ++ V   + ++ V
Sbjct: 8  GDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 37


>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
          Length = 484

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 104 RV--ARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPV 140
           RV  ARG G  G      +I  +  +        + TPV
Sbjct: 49  RVVHARGTGVKGEFTASADISDL--SKATVFKSGEKTPV 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,993
Number of extensions: 28055
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 11
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)