Query 031474
Match_columns 159
No_of_seqs 107 out of 265
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 14:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00178 STI Soybean trypsin in 100.0 4.2E-45 9.1E-50 286.9 14.0 123 27-155 1-125 (172)
2 smart00452 STI Soybean trypsin 100.0 7.6E-44 1.7E-48 279.8 14.0 121 28-155 1-122 (172)
3 PF00197 Kunitz_legume: Trypsi 100.0 1.7E-43 3.7E-48 278.5 12.8 125 27-156 1-128 (176)
4 PF07951 Toxin_R_bind_C: Clost 91.4 1.8 4E-05 35.3 8.7 88 25-118 7-104 (214)
5 PF04202 Mfp-3: Foot protein 3 58.7 12 0.00026 25.3 2.8 42 1-43 1-43 (71)
6 PF08194 DIM: DIM protein; In 56.2 17 0.00038 21.6 2.9 8 1-8 1-8 (36)
7 PF00879 Defensin_propep: Defe 54.8 13 0.00029 23.8 2.4 16 1-16 1-17 (52)
8 PRK10220 hypothetical protein; 54.1 19 0.0004 26.7 3.3 23 26-48 42-64 (111)
9 COG2824 PhnA Uncharacterized Z 52.2 20 0.00043 26.5 3.2 24 25-48 42-65 (112)
10 TIGR00686 phnA alkylphosphonat 50.3 22 0.00049 26.2 3.3 23 26-48 41-63 (109)
11 PF02402 Lysis_col: Lysis prot 50.2 9.3 0.0002 23.8 1.1 20 20-39 16-35 (46)
12 PF14009 DUF4228: Domain of un 47.1 12 0.00025 28.1 1.5 19 31-49 64-82 (181)
13 PF09716 ETRAMP: Malarial earl 46.0 16 0.00035 25.3 1.9 19 1-19 1-19 (84)
14 PF03831 PhnA: PhnA protein; 45.0 11 0.00023 24.7 0.8 20 27-46 1-20 (56)
15 PF09466 Yqai: Hypothetical pr 43.7 18 0.0004 24.6 1.8 20 27-46 25-44 (71)
16 PF05550 Peptidase_C53: Pestiv 42.6 18 0.00038 28.2 1.8 25 15-39 11-35 (168)
17 PF07172 GRP: Glycine rich pro 37.2 20 0.00044 25.5 1.3 11 28-38 32-42 (95)
18 PF00812 Ephrin: Ephrin; Inte 34.8 25 0.00055 27.0 1.6 25 32-56 101-125 (145)
19 PF10657 RC-P840_PscD: Photosy 34.4 34 0.00073 26.0 2.2 25 32-56 24-48 (144)
20 PRK11289 ampC beta-lactamase/D 33.9 33 0.00071 30.0 2.4 18 1-18 2-19 (384)
21 TIGR02652 conserved hypothetic 33.3 27 0.00059 27.1 1.5 10 79-88 123-132 (163)
22 PF05474 Semenogelin: Semenoge 32.7 22 0.00047 32.8 1.1 14 1-14 1-14 (582)
23 PF10813 DUF2733: Protein of u 32.5 21 0.00046 20.7 0.7 19 24-42 11-29 (32)
24 KOG3858 Ephrin, ligand for Eph 31.7 36 0.00079 28.3 2.2 43 32-75 117-164 (233)
25 PF09654 DUF2396: Protein of u 31.1 32 0.00069 26.7 1.6 10 79-88 121-130 (161)
26 PF11912 DUF3430: Protein of u 29.8 37 0.0008 26.5 1.9 22 91-113 126-147 (212)
27 TIGR01495 ETRAMP Plasmodium ri 29.3 43 0.00094 23.5 1.9 20 1-20 1-20 (85)
28 PRK10159 outer membrane phosph 27.8 54 0.0012 28.1 2.7 36 1-40 1-36 (351)
29 PF02950 Conotoxin: Conotoxin; 27.0 21 0.00046 23.4 0.0 8 1-8 1-8 (75)
30 PRK15208 long polar fimbrial c 26.5 3.3E+02 0.0072 22.0 7.0 6 1-6 1-6 (228)
31 PRK10002 outer membrane protei 24.5 69 0.0015 27.5 2.7 36 1-41 2-38 (362)
32 PRK11354 kil FtsZ inhibitor pr 24.5 71 0.0015 21.8 2.2 49 32-85 18-70 (73)
33 TIGR02588 conserved hypothetic 22.9 1.5E+02 0.0032 22.3 3.9 32 25-57 34-65 (122)
34 PF06589 CRA: Circumsporozoite 22.6 64 0.0014 24.8 1.9 19 53-72 95-113 (157)
35 COG3045 CreA Uncharacterized p 21.7 1.6E+02 0.0036 23.1 4.0 24 27-50 42-65 (165)
36 COG5510 Predicted small secret 21.4 71 0.0015 19.8 1.6 13 1-13 2-14 (44)
37 PF05538 Campylo_MOMP: Campylo 20.8 65 0.0014 29.2 1.8 30 1-32 1-33 (431)
38 PRK10884 SH3 domain-containing 20.5 75 0.0016 25.7 2.0 19 27-45 27-47 (206)
39 PRK10318 hypothetical protein; 20.1 53 0.0011 24.6 1.0 14 54-67 40-53 (121)
No 1
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=100.00 E-value=4.2e-45 Score=286.89 Aligned_cols=123 Identities=45% Similarity=0.844 Sum_probs=113.8
Q ss_pred ceeeCCCCccccCCCEEEEecccCCCCceeEeeccCCCCCCcceEEccCCCCCCeeeEEEecC-CCCccccCCceEEEec
Q 031474 27 PLVDVHGNKVEASRDYYLVSAIRGAGGGGLTLFRGRNELCPLDVVQLSSDSERGTRLRFSMHD-KTSIINEDVDLNVRFS 105 (159)
Q Consensus 27 ~VlD~~G~~l~~g~~YYI~p~~~g~gGGl~~~~~~~~~~CPl~Vvq~~~e~~~GlPv~Fs~~~-~~~~I~est~lnI~F~ 105 (159)
+|+|+|||||++|.+|||+|++||.||||++++++ +++||++|+|++++.++|+||+|+|++ ++.+|||+++|||+|.
T Consensus 1 ~VlD~~G~~l~~g~~YyI~p~~~g~GGGl~l~~~~-~~~CPl~VvQ~~~~~~~GlPv~Fs~~~~~~~~I~e~t~lnI~F~ 79 (172)
T cd00178 1 PVLDTDGNPLRNGGRYYILPAIRGGGGGLTLAATG-NETCPLTVVQSPSELDRGLPVKFSPPNPKSDVIRESTDLNIEFD 79 (172)
T ss_pred CcCcCCCCCCcCCCeEEEEEceeCCCCcEEEcCCC-CCCCCCeeEECCCCCCCCeeEEEEeCCCCCCEEECCCcEEEEeC
Confidence 69999999999999999999999989999999886 569999999999999999999999987 8999999999999999
Q ss_pred cCCCC-CCCCeEEEcccCCCCCceEEEeCCCCCCCCCCCCCCceEEEEeCC
Q 031474 106 TETRC-NEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGR 155 (159)
Q Consensus 106 ~~~~C-~~st~W~V~~~~~~~~~~~V~~Gg~~g~pg~~t~~~~FkIek~~~ 155 (159)
..+.| ++|++|+|++.++ .++|||+|||.+++ +.+|||||||+++
T Consensus 80 ~~~~c~~~st~W~V~~~~~-~~~~~V~~Gg~~~~----~~~~~FkIek~~~ 125 (172)
T cd00178 80 APTWCCGSSTVWKVDRDST-PEGLFVTTGGVKGN----TLNSWFKIEKVSE 125 (172)
T ss_pred CCCcCCCCCCEEEEeccCC-ccCeEEEeCCcCCC----cccceEEEEECCC
Confidence 98777 9999999997655 78999999998875 6799999999986
No 2
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=100.00 E-value=7.6e-44 Score=279.81 Aligned_cols=121 Identities=39% Similarity=0.757 Sum_probs=110.7
Q ss_pred eeeCCCCccccCCCEEEEecccCCCCceeEeeccCCCCCCcceEEccCCCCCCeeeEEEecC-CCCccccCCceEEEecc
Q 031474 28 LVDVHGNKVEASRDYYLVSAIRGAGGGGLTLFRGRNELCPLDVVQLSSDSERGTRLRFSMHD-KTSIINEDVDLNVRFST 106 (159)
Q Consensus 28 VlD~~G~~l~~g~~YYI~p~~~g~gGGl~~~~~~~~~~CPl~Vvq~~~e~~~GlPv~Fs~~~-~~~~I~est~lnI~F~~ 106 (159)
|+|+|||||++|++|||+|++||.||||++++++ |++||++|+|++++.++|+||+|+|++ +..+|||+++|||+|..
T Consensus 1 VlDt~G~~l~~G~~YyI~p~~~g~GGGl~l~~~~-n~~CPl~VvQ~~~~~~~GlPV~Fs~~~~~~~ii~e~t~lnI~F~~ 79 (172)
T smart00452 1 VLDTDGNPLRNGGTYYILPAIRGHGGGLTLAATG-NEICPLTVVQSPNEVDNGLPVKFSPPNPSDFIIRESTDLNIEFDA 79 (172)
T ss_pred CCCCCCCCCcCCCcEEEEEccccCCCCEEEccCC-CCCCCCeeEECCCCCCCceeEEEeecCCCCCEEecCceEEEEeCC
Confidence 7999999999999999999999988999999886 569999999999999999999999976 78899999999999999
Q ss_pred CCCCCCCCeEEEcccCCCCCceEEEeCCCCCCCCCCCCCCceEEEEeCC
Q 031474 107 ETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGR 155 (159)
Q Consensus 107 ~~~C~~st~W~V~~~~~~~~~~~V~~Gg~~g~pg~~t~~~~FkIek~~~ 155 (159)
.+.|++|++|+|++ ++..++|||+||| +|+.. +|||||||+++
T Consensus 80 ~~~C~~st~W~V~~-~~~~~~~~V~~gg---~~~~~--~~~FkIek~~~ 122 (172)
T smart00452 80 PPLCAQSTVWTVDE-DSAPEGLAVKTGG---YPGVR--DSWFKIEKYSG 122 (172)
T ss_pred CCCCCCCCEEEEec-CCccccEEEEeCC---cCCCC--CCeEEEEECCC
Confidence 88999999999985 6678899999998 45443 69999999986
No 3
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=100.00 E-value=1.7e-43 Score=278.49 Aligned_cols=125 Identities=45% Similarity=0.838 Sum_probs=111.5
Q ss_pred ceeeCCCCccccCCCEEEEecccCCCCceeEeeccCCCCCCcceEEccCCCCCCeeeEEEec--C-CCCccccCCceEEE
Q 031474 27 PLVDVHGNKVEASRDYYLVSAIRGAGGGGLTLFRGRNELCPLDVVQLSSDSERGTRLRFSMH--D-KTSIINEDVDLNVR 103 (159)
Q Consensus 27 ~VlD~~G~~l~~g~~YYI~p~~~g~gGGl~~~~~~~~~~CPl~Vvq~~~e~~~GlPv~Fs~~--~-~~~~I~est~lnI~ 103 (159)
||+|+|||||++|.+|||+|++||.|||++++.++ |++||++|+|++++.++|+||+|+|+ . .+.+|||+++|||+
T Consensus 1 pVlD~~G~~l~~g~~YyI~p~~~~~GGGl~l~~~~-n~~CPl~Vvq~~~~~~~GlPv~Fs~~~~~~~~~~ir~st~l~I~ 79 (176)
T PF00197_consen 1 PVLDTDGNPLRNGGEYYILPAIRGAGGGLTLAKTG-NETCPLDVVQSPSELSRGLPVKFSPPYRNSFDTVIRESTDLNIE 79 (176)
T ss_dssp B-BETTSCB-BTTSEEEEEESSTGCSEEEEEECCT-TSSSSEEEEEESSTTS-BSEEEEEESSSSSSTBCTBTTSEEEEE
T ss_pred CcCCCCCCCCcCCCCEEEEeCccCCCCeeEecCCC-CCCCChheEEccCCCCCceeEEEEeCCcccCCCeeEcceEEEEE
Confidence 79999999999999999999999999999999986 67999999999999999999999994 3 67899999999999
Q ss_pred eccCCCCCCCCeEEEcccCCCCCceEEEeCCCCCCCCCCCCCCceEEEEeCCC
Q 031474 104 FSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRD 156 (159)
Q Consensus 104 F~~~~~C~~st~W~V~~~~~~~~~~~V~~Gg~~g~pg~~t~~~~FkIek~~~~ 156 (159)
|...+.|..+++|+|++.++++++ ||+|||.++ .++.+|||||||++++
T Consensus 80 F~~~~~c~~~~~W~V~~~~~~~~~-~V~~gg~~~---~~~~~~~FkIek~~~~ 128 (176)
T PF00197_consen 80 FSSPTSCACSTVWKVVKDDPETGQ-FVKTGGVKG---PETVDSWFKIEKYEDG 128 (176)
T ss_dssp ESSECTTSSSSBEEEEEETTTTEE-EEEEESSSS---SGCGCCEEEEEEESSS
T ss_pred EccCCCCCccCEEEEeecCcccce-EEEeCCccc---CCccCcEEEEEEeCCC
Confidence 999989999999999987766555 999999876 6788999999999885
No 4
>PF07951 Toxin_R_bind_C: Clostridium neurotoxin, C-terminal receptor binding; InterPro: IPR013104 The Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domains and two receptor-binding domains []. This domain is the C-terminal receptor-binding domain, which adopts a modified beta-trefoil fold with a six stranded beta-barrel and a beta-hairpin triplet capping the domain []. The first step in the intoxication process is a binding event between this domain and the pre-synaptic nerve ending []. ; PDB: 3AZW_A 3N7L_A 3AZV_A 3N7M_A 3RSJ_B 3FUQ_A 3RMX_D 3OBT_A 3RMY_B 3OGG_A ....
Probab=91.44 E-value=1.8 Score=35.34 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=56.4
Q ss_pred CCceeeCCCCccccCCCEEEEecccC------CCCceeEeeccCCCCCCcceEEccCCCCCCeeeEEEecC----CCCcc
Q 031474 25 ADPLVDVHGNKVEASRDYYLVSAIRG------AGGGGLTLFRGRNELCPLDVVQLSSDSERGTRLRFSMHD----KTSII 94 (159)
Q Consensus 25 ~~~VlD~~G~~l~~g~~YYI~p~~~g------~gGGl~~~~~~~~~~CPl~Vvq~~~e~~~GlPv~Fs~~~----~~~~I 94 (159)
...+.|-=||+|+-..+||++++..- ...++......+. +--+.+....+++-.|++|++.... .+..|
T Consensus 7 ~niLKDfWGN~L~YdkeYYl~N~~~~n~yi~~~~~~~~~~n~~r~-~~~~ni~~n~r~LY~G~k~iIkr~~~~~~~Dn~V 85 (214)
T PF07951_consen 7 TNILKDFWGNYLRYDKEYYLLNVLYPNKYIKRKSDSILSINNQRG-TGVFNIYLNYRDLYTGIKFIIKRYADNSNNDNRV 85 (214)
T ss_dssp TTB-BBTTSSB-BTTSEEEEEESSSTTEEEEEETTSEEEEEEEEE-EEEEEEESEETSSSSS-EEEEEESSTSSSTSSB-
T ss_pred ccHHHHhcCCccccCceeEEEecCCcccceeecccceeeeccccc-ccceeeeeeehhhccCceEEEEEccCCCCCccee
Confidence 46899999999999999999998642 2233422211111 1012233334568899999998742 67899
Q ss_pred ccCCceEEEeccCCCCCCCCeEEE
Q 031474 95 NEDVDLNVRFSTETRCNEPTVWRV 118 (159)
Q Consensus 95 ~est~lnI~F~~~~~C~~st~W~V 118 (159)
|.+..+.|.|... ...|.|
T Consensus 86 r~~D~iy~n~~~~-----n~ey~l 104 (214)
T PF07951_consen 86 RNGDYIYFNVVIN-----NKEYRL 104 (214)
T ss_dssp BTTEEEEEEEEET-----TEEEEE
T ss_pred ecCCEEEEEEEeC-----CceEEE
Confidence 9999999999654 557888
No 5
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=58.68 E-value=12 Score=25.25 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHhcCCCcCCCCCCceeeCC-CCccccCCCEE
Q 031474 1 MSTPFVTAISFLLLTFSTKPLVGLADPLVDVH-GNKVEASRDYY 43 (159)
Q Consensus 1 MK~~~l~~l~fl~~~~~~~~~~~~~~~VlD~~-G~~l~~g~~YY 43 (159)
|+...++.|++|.|+-++ +.++++..-+|.. +.|-+-++-||
T Consensus 1 mnn~Si~VLlaLvLIg~f-AVqSdag~~y~p~y~~~~~y~gg~Y 43 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSF-AVQSDAGYYYYPGYNAPRRYNGGYY 43 (71)
T ss_pred CCchhHHHHHHHHHHhhh-eeeecCccccCCCCCCCcccCCccc
Confidence 777766555555553333 3333444455544 55555555444
No 6
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=56.19 E-value=17 Score=21.56 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=6.0
Q ss_pred CCchHHHH
Q 031474 1 MSTPFVTA 8 (159)
Q Consensus 1 MK~~~l~~ 8 (159)
||..++++
T Consensus 1 Mk~l~~a~ 8 (36)
T PF08194_consen 1 MKCLSLAF 8 (36)
T ss_pred CceeHHHH
Confidence 99887754
No 7
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=54.79 E-value=13 Score=23.84 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=9.9
Q ss_pred CCchHHHH-HHHHHHhc
Q 031474 1 MSTPFVTA-ISFLLLTF 16 (159)
Q Consensus 1 MK~~~l~~-l~fl~~~~ 16 (159)
||+..|+. +++|+|-.
T Consensus 1 MRTL~LLaAlLLlAlqa 17 (52)
T PF00879_consen 1 MRTLALLAALLLLALQA 17 (52)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 88776644 55666633
No 8
>PRK10220 hypothetical protein; Provisional
Probab=54.10 E-value=19 Score=26.66 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.6
Q ss_pred CceeeCCCCccccCCCEEEEecc
Q 031474 26 DPLVDVHGNKVEASRDYYLVSAI 48 (159)
Q Consensus 26 ~~VlD~~G~~l~~g~~YYI~p~~ 48 (159)
..|.|++|++|..|.+--++=-.
T Consensus 42 ~~vkDsnG~~L~dGDsV~viKDL 64 (111)
T PRK10220 42 LIVKDANGNLLADGDSVTIVKDL 64 (111)
T ss_pred ceEEcCCCCCccCCCEEEEEeec
Confidence 46999999999999887766543
No 9
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=52.17 E-value=20 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.5
Q ss_pred CCceeeCCCCccccCCCEEEEecc
Q 031474 25 ADPLVDVHGNKVEASRDYYLVSAI 48 (159)
Q Consensus 25 ~~~VlD~~G~~l~~g~~YYI~p~~ 48 (159)
...|+|.+||.|..|..--|+--.
T Consensus 42 ~~~v~DsnGn~L~dGDsV~lIKDL 65 (112)
T COG2824 42 ALIVKDSNGNLLADGDSVTLIKDL 65 (112)
T ss_pred ceEEEcCCCcEeccCCeEEEEEee
Confidence 358999999999999887776543
No 10
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=50.28 E-value=22 Score=26.15 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.6
Q ss_pred CceeeCCCCccccCCCEEEEecc
Q 031474 26 DPLVDVHGNKVEASRDYYLVSAI 48 (159)
Q Consensus 26 ~~VlD~~G~~l~~g~~YYI~p~~ 48 (159)
..|+|++|++|..|.+--|+=-.
T Consensus 41 ~~~kDsnG~~L~dGDsV~liKDL 63 (109)
T TIGR00686 41 LIVKDCNGNLLANGDSVILIKDL 63 (109)
T ss_pred ceEEcCCCCCccCCCEEEEEeec
Confidence 46999999999999887766543
No 11
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=50.23 E-value=9.3 Score=23.80 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=14.7
Q ss_pred cCCCCCCceeeCCCCccccC
Q 031474 20 PLVGLADPLVDVHGNKVEAS 39 (159)
Q Consensus 20 ~~~~~~~~VlD~~G~~l~~g 39 (159)
+++.+.+-|.|+.|-.|-+.
T Consensus 16 L~aCQaN~iRDvqGGtVaPS 35 (46)
T PF02402_consen 16 LAACQANYIRDVQGGTVAPS 35 (46)
T ss_pred HHHhhhcceecCCCceECCC
Confidence 34567788999998877654
No 12
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=47.12 E-value=12 Score=28.08 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=16.3
Q ss_pred CCCCccccCCCEEEEeccc
Q 031474 31 VHGNKVEASRDYYLVSAIR 49 (159)
Q Consensus 31 ~~G~~l~~g~~YYI~p~~~ 49 (159)
.-.++|+.|.-||+||..+
T Consensus 64 ~~d~~L~~G~~Y~llP~~~ 82 (181)
T PF14009_consen 64 PPDEELQPGQIYFLLPMSR 82 (181)
T ss_pred CccCeecCCCEEEEEEccc
Confidence 4567899999999999865
No 13
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=45.96 E-value=16 Score=25.32 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHhcCCC
Q 031474 1 MSTPFVTAISFLLLTFSTK 19 (159)
Q Consensus 1 MK~~~l~~l~fl~~~~~~~ 19 (159)
||.+-+++|+.+|++...+
T Consensus 1 MKi~kv~~ff~~Ll~i~~l 19 (84)
T PF09716_consen 1 MKISKVFYFFAFLLAINLL 19 (84)
T ss_pred CcHHHHHHHHHHHHHHHhC
Confidence 9988775444444444443
No 14
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=44.99 E-value=11 Score=24.66 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=11.4
Q ss_pred ceeeCCCCccccCCCEEEEe
Q 031474 27 PLVDVHGNKVEASRDYYLVS 46 (159)
Q Consensus 27 ~VlD~~G~~l~~g~~YYI~p 46 (159)
.|.|.+|++|..|.+--++=
T Consensus 1 vv~DsnGn~L~dGDsV~~iK 20 (56)
T PF03831_consen 1 VVKDSNGNELQDGDSVTLIK 20 (56)
T ss_dssp S-B-TTS-B--TTEEEEESS
T ss_pred CeEcCCCCCccCCCEEEEEe
Confidence 37899999999997766543
No 15
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=43.71 E-value=18 Score=24.64 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=12.2
Q ss_pred ceeeCCCCccccCCCEEEEe
Q 031474 27 PLVDVHGNKVEASRDYYLVS 46 (159)
Q Consensus 27 ~VlD~~G~~l~~g~~YYI~p 46 (159)
++.|.-|+++..|..|+|.|
T Consensus 25 ~i~D~yG~EI~~~D~y~i~~ 44 (71)
T PF09466_consen 25 PIEDFYGDEIFPGDDYFISP 44 (71)
T ss_dssp B---TTSS-B-TTS-EEE-E
T ss_pred ceeeeeccccccCCeEEEeC
Confidence 67889999999999999976
No 16
>PF05550 Peptidase_C53: Pestivirus Npro endopeptidase C53; InterPro: IPR008751 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C53 (clan C-). The active site residues occur in the order E, H, C in the sequence which is unlike that in any other family. They are unique to pestiviruses. The N-terminal cysteine peptidase (Npro) encoded by the bovine viral diarrhoea virus genome is responsible for the self-cleavage that releases the N terminus of the core protein. This unique protease is dispensable for viral replication, and its coding region can be replaced by a ubiquitin gene directly fused in frame to the core [, , , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=42.63 E-value=18 Score=28.24 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=17.8
Q ss_pred hcCCCcCCCCCCceeeCCCCccccC
Q 031474 15 TFSTKPLVGLADPLVDVHGNKVEAS 39 (159)
Q Consensus 15 ~~~~~~~~~~~~~VlD~~G~~l~~g 39 (159)
-|+-.-+.-..|||+|..|+||.-.
T Consensus 11 kt~kq~P~Gv~EPVyd~~g~plfGe 35 (168)
T PF05550_consen 11 KTYKQKPAGVEEPVYDSAGNPLFGE 35 (168)
T ss_pred hhcCCCCcccccccccCCCCCccCC
Confidence 3333344556799999999999854
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.23 E-value=20 Score=25.53 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.8
Q ss_pred eeeCCCCcccc
Q 031474 28 LVDVHGNKVEA 38 (159)
Q Consensus 28 VlD~~G~~l~~ 38 (159)
+...+-++|+.
T Consensus 32 ~~~~~~~~v~~ 42 (95)
T PF07172_consen 32 EKEEEENEVQD 42 (95)
T ss_pred cccccCCCCCc
Confidence 33444444443
No 18
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=34.82 E-value=25 Score=26.96 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=19.1
Q ss_pred CCCccccCCCEEEEecccCCCCcee
Q 031474 32 HGNKVEASRDYYLVSAIRGAGGGGL 56 (159)
Q Consensus 32 ~G~~l~~g~~YYI~p~~~g~gGGl~ 56 (159)
.|-+-++|.+||++....|.-+|+.
T Consensus 101 ~G~EF~pG~~YY~ISts~g~~~g~~ 125 (145)
T PF00812_consen 101 LGLEFQPGHDYYYISTSTGTQEGLD 125 (145)
T ss_dssp TSSS--TTEEEEEEEEESSSSTTTT
T ss_pred CCeeecCCCeEEEEEccCCCCCCcc
Confidence 7889999999999998887666654
No 19
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=34.43 E-value=34 Score=25.97 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.5
Q ss_pred CCCccccCCCEEEEecccCCCCcee
Q 031474 32 HGNKVEASRDYYLVSAIRGAGGGGL 56 (159)
Q Consensus 32 ~G~~l~~g~~YYI~p~~~g~gGGl~ 56 (159)
.||++--..+|||-.|.|+..|-|.
T Consensus 24 sGNa~HK~eKYfITsAkRD~~g~Lq 48 (144)
T PF10657_consen 24 SGNAVHKAEKYFITSAKRDRYGKLQ 48 (144)
T ss_pred cCchhhhhheeEEeeeecccCCceE
Confidence 7999999999999999999877664
No 20
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=33.91 E-value=33 Score=29.98 Aligned_cols=18 Identities=33% Similarity=0.358 Sum_probs=12.5
Q ss_pred CCchHHHHHHHHHHhcCC
Q 031474 1 MSTPFVTAISFLLLTFST 18 (159)
Q Consensus 1 MK~~~l~~l~fl~~~~~~ 18 (159)
||..+|+|+.||++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (384)
T PRK11289 2 MKMMLLLLLAALLLTASA 19 (384)
T ss_pred cchhhHHHHHHHHHHhhh
Confidence 898888776666665544
No 21
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=33.35 E-value=27 Score=27.10 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=7.9
Q ss_pred CCeeeEEEec
Q 031474 79 RGTRLRFSMH 88 (159)
Q Consensus 79 ~GlPv~Fs~~ 88 (159)
-||||.|||.
T Consensus 123 YGLPveFsp~ 132 (163)
T TIGR02652 123 YGLPVEFSPA 132 (163)
T ss_pred cccceeccCC
Confidence 5888888875
No 22
>PF05474 Semenogelin: Semenogelin; InterPro: IPR008836 This family consists of several mammalian semenogelin (I and II) proteins. Freshly ejaculated Homo sapiens semen has the appearance of a loose gel in which the predominant structural protein components are the seminal vesicle secreted semenogelins (Sg) [].; GO: 0005198 structural molecule activity, 0019953 sexual reproduction, 0005576 extracellular region, 0030141 stored secretory granule
Probab=32.66 E-value=22 Score=32.79 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=9.6
Q ss_pred CCchHHHHHHHHHH
Q 031474 1 MSTPFVTAISFLLL 14 (159)
Q Consensus 1 MK~~~l~~l~fl~~ 14 (159)
||+++++.|+|||+
T Consensus 1 MK~~I~F~lSLLLi 14 (582)
T PF05474_consen 1 MKSIIFFVLSLLLI 14 (582)
T ss_pred CCceeehHHHHHHH
Confidence 99977655666654
No 23
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=32.51 E-value=21 Score=20.65 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=14.2
Q ss_pred CCCceeeCCCCccccCCCE
Q 031474 24 LADPLVDVHGNKVEASRDY 42 (159)
Q Consensus 24 ~~~~VlD~~G~~l~~g~~Y 42 (159)
...++.|.+|+++.--..|
T Consensus 11 r~n~l~Dv~G~~Inl~~dF 29 (32)
T PF10813_consen 11 RHNPLKDVKGNPINLYKDF 29 (32)
T ss_pred cCCcccccCCCEEechhcc
Confidence 3468999999998755443
No 24
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=31.71 E-value=36 Score=28.25 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=28.8
Q ss_pred CCCccccCCCEEEEecccCCCCcee-----EeeccCCCCCCcceEEccC
Q 031474 32 HGNKVEASRDYYLVSAIRGAGGGGL-----TLFRGRNELCPLDVVQLSS 75 (159)
Q Consensus 32 ~G~~l~~g~~YYI~p~~~g~gGGl~-----~~~~~~~~~CPl~Vvq~~~ 75 (159)
.|.+-++|.+||+++...|.-.|+- +-.+. +..|=..|.|++.
T Consensus 117 ~G~EF~pG~~YY~IStStg~~~g~~~~~ggvc~~~-~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 117 LGFEFQPGHTYYYISTSTGDAEGLCNLRGGVCVTR-NMKLLMKVGQSPR 164 (233)
T ss_pred CCccccCCCeEEEEeCCCccccccchhhCCEeccC-CceEEEEecccCC
Confidence 6999999999999998776433331 11111 2367777888765
No 25
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=31.08 E-value=32 Score=26.66 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=7.7
Q ss_pred CCeeeEEEec
Q 031474 79 RGTRLRFSMH 88 (159)
Q Consensus 79 ~GlPv~Fs~~ 88 (159)
-||||.|||.
T Consensus 121 YGLPveFsp~ 130 (161)
T PF09654_consen 121 YGLPVEFSPD 130 (161)
T ss_pred eccceecCCC
Confidence 5888888875
No 26
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=29.79 E-value=37 Score=26.50 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=13.9
Q ss_pred CCccccCCceEEEeccCCCCCCC
Q 031474 91 TSIINEDVDLNVRFSTETRCNEP 113 (159)
Q Consensus 91 ~~~I~est~lnI~F~~~~~C~~s 113 (159)
...|...+-+.+.+.. ..|...
T Consensus 126 ~p~ip~ns~v~~~y~~-~~C~~~ 147 (212)
T PF11912_consen 126 NPYIPSNSYVYSYYSG-SSCSGD 147 (212)
T ss_pred CCcCCCccEEEEEecC-CccCCC
Confidence 4556666666666665 468665
No 27
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=29.35 E-value=43 Score=23.45 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=12.4
Q ss_pred CCchHHHHHHHHHHhcCCCc
Q 031474 1 MSTPFVTAISFLLLTFSTKP 20 (159)
Q Consensus 1 MK~~~l~~l~fl~~~~~~~~ 20 (159)
||.+-.+.|++++|++..+.
T Consensus 1 MKisKi~~f~~~Ll~in~~~ 20 (85)
T TIGR01495 1 MKVSKILYFFAALLAINFIA 20 (85)
T ss_pred CchhHHHHHHHHHHHHHhCc
Confidence 89887655555555555443
No 28
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=27.78 E-value=54 Score=28.15 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHHHhcCCCcCCCCCCceeeCCCCccccCC
Q 031474 1 MSTPFVTAISFLLLTFSTKPLVGLADPLVDVHGNKVEASR 40 (159)
Q Consensus 1 MK~~~l~~l~fl~~~~~~~~~~~~~~~VlD~~G~~l~~g~ 40 (159)
||.+++++ ..++++. ++++.+.+|+|.||.-|.-.+
T Consensus 1 Mkk~l~a~-~~~a~~~---~~~a~A~~vy~~d~ssvtlyG 36 (351)
T PRK10159 1 MKKSTLAL-VVMGIVA---SASVQAAEVYNKDGNKLDVYG 36 (351)
T ss_pred CchhhHHH-HHHHHHH---hccccEEEEEECCCCEEEEEE
Confidence 89876542 3333222 112344688888887775443
No 29
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=26.97 E-value=21 Score=23.45 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCchHHHH
Q 031474 1 MSTPFVTA 8 (159)
Q Consensus 1 MK~~~l~~ 8 (159)
||.|.+++
T Consensus 1 mKLt~vli 8 (75)
T PF02950_consen 1 MKLTCVLI 8 (75)
T ss_dssp --------
T ss_pred CCcchHHH
Confidence 89886544
No 30
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=26.54 E-value=3.3e+02 Score=22.02 Aligned_cols=6 Identities=17% Similarity=-0.136 Sum_probs=4.1
Q ss_pred CCchHH
Q 031474 1 MSTPFV 6 (159)
Q Consensus 1 MK~~~l 6 (159)
||.+.+
T Consensus 1 ~~~~~~ 6 (228)
T PRK15208 1 MRLISF 6 (228)
T ss_pred CchhHH
Confidence 887644
No 31
>PRK10002 outer membrane protein F; Provisional
Probab=24.46 E-value=69 Score=27.55 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=20.0
Q ss_pred CCchHHHHHHH-HHHhcCCCcCCCCCCceeeCCCCccccCCC
Q 031474 1 MSTPFVTAISF-LLLTFSTKPLVGLADPLVDVHGNKVEASRD 41 (159)
Q Consensus 1 MK~~~l~~l~f-l~~~~~~~~~~~~~~~VlD~~G~~l~~g~~ 41 (159)
||-|++++.+. ++++. ++.+..|+|-||.-|.-.+.
T Consensus 2 mkktl~a~a~~a~~~a~-----~a~A~~vy~~dg~sVtLYG~ 38 (362)
T PRK10002 2 MKRNILAVIVPALLVAG-----TANAAEIYNKDGNKVDLYGK 38 (362)
T ss_pred ccHhHHHHHHHHHHHhc-----ccceeeEeecCCCEEEEeCE
Confidence 99887753221 12222 12224588888887765543
No 32
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=24.46 E-value=71 Score=21.82 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=30.1
Q ss_pred CCCccccCCCEEEEecccCCCCceeEeeccCCCC----CCcceEEccCCCCCCeeeEE
Q 031474 32 HGNKVEASRDYYLVSAIRGAGGGGLTLFRGRNEL----CPLDVVQLSSDSERGTRLRF 85 (159)
Q Consensus 32 ~G~~l~~g~~YYI~p~~~g~gGGl~~~~~~~~~~----CPl~Vvq~~~e~~~GlPv~F 85 (159)
=|.-+.-.+++|+.+|..=..|.|.+ .+..+.. |-..|... .+|.|++-
T Consensus 18 PG~~v~~~grty~ASAN~~~r~~LYl-~~~~e~~~i~d~~IeVyL~----~~G~Plt~ 70 (73)
T PRK11354 18 PGDYVLHEGRTYIASANNIKKRKLYI-RTLTTKTCITDCMIKVFLG----RDGLPVKA 70 (73)
T ss_pred CceEEEEcCcEEEEEechhhCceEEE-EeeeEEEEEeeeEEEEEEc----CCCCcccc
Confidence 36677777899999986333445543 3333333 55556554 37888853
No 33
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=22.86 E-value=1.5e+02 Score=22.27 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=21.8
Q ss_pred CCceeeCCCCccccCCCEEEEecccCCCCceeE
Q 031474 25 ADPLVDVHGNKVEASRDYYLVSAIRGAGGGGLT 57 (159)
Q Consensus 25 ~~~VlD~~G~~l~~g~~YYI~p~~~g~gGGl~~ 57 (159)
|....+..+..=+.+++||+--.+++.| |-+.
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~g-g~TA 65 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLG-GTTA 65 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCC-CcEE
Confidence 3455666666555888899988888764 4443
No 34
>PF06589 CRA: Circumsporozoite-related antigen (CRA); InterPro: IPR009512 The mode of choroquine action or resistance of the malarial parasite Plasmodium falciparum is not fully elucidated and presents a huge challenge world wide. Plasmodial EXP-1 protein, also called circumsporozoite-related antigen, changes under chloroquine treatment, making it a potential chloroquine resistance marker []. Although there are no authentic repeats in this antigen, there are a number of internal homologies (N-A-N-P) and (N-A-D-P). The first of these tetramers is the dominant repeat found in the circumsporozoite protein (CSP) of P. falciparum and reacts with antibodies against circumsporozoite-related antigen (CRA). It is possible that immune responses to CRA may act against the CSP also. The CRA is found in many parasitic strains.
Probab=22.58 E-value=64 Score=24.81 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=12.0
Q ss_pred CceeEeeccCCCCCCcceEE
Q 031474 53 GGGLTLFRGRNELCPLDVVQ 72 (159)
Q Consensus 53 GGl~~~~~~~~~~CPl~Vvq 72 (159)
-|+++-.++ +.+-|..+.-
T Consensus 95 ~Glv~Ynt~-~gr~pf~~g~ 113 (157)
T PF06589_consen 95 AGLVMYNTE-KGRHPFQIGK 113 (157)
T ss_pred ceeEEEecC-CCcCCeecCC
Confidence 377777775 4477766543
No 35
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.74 E-value=1.6e+02 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.0
Q ss_pred ceeeCCCCccccCCCEEEEecccC
Q 031474 27 PLVDVHGNKVEASRDYYLVSAIRG 50 (159)
Q Consensus 27 ~VlD~~G~~l~~g~~YYI~p~~~g 50 (159)
.|++.--+|.-.|..-||--+.+|
T Consensus 42 IvveafdDP~V~gVTCyvs~a~~g 65 (165)
T COG3045 42 IVVEAFDDPDVKGVTCYVSRAKTG 65 (165)
T ss_pred EEEEecCCCCcCcEEEEEEEeccc
Confidence 677777788889999999998775
No 36
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.37 E-value=71 Score=19.78 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=7.0
Q ss_pred CCchHHHHHHHHH
Q 031474 1 MSTPFVTAISFLL 13 (159)
Q Consensus 1 MK~~~l~~l~fl~ 13 (159)
||.+.++.+++++
T Consensus 2 mk~t~l~i~~vll 14 (44)
T COG5510 2 MKKTILLIALVLL 14 (44)
T ss_pred chHHHHHHHHHHH
Confidence 7776664433443
No 37
>PF05538 Campylo_MOMP: Campylobacter major outer membrane protein; InterPro: IPR008439 Campylobacter are Gram-negative, spiral, microaerophilic bacteria. Campylobacter jejuni is one of the main causative agents of food poisoning in the developed world. This family consists of Campylobacter major outer membrane proteins. The major outer membrane protein (MOMP), a putative porin and a multifunction surface protein of Campylobacter jejuni, may play an important role in the adaptation of the organism to various host environments [].
Probab=20.77 E-value=65 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHH-hcCCCcCCCCC--CceeeCC
Q 031474 1 MSTPFVTAISFLLL-TFSTKPLVGLA--DPLVDVH 32 (159)
Q Consensus 1 MK~~~l~~l~fl~~-~~~~~~~~~~~--~~VlD~~ 32 (159)
||.+.|-+.-.+++ +++ .|+|+| |.+.|+|
T Consensus 1 MKl~KlSLaAavA~gafS--tA~A~PLeEaiKdVd 33 (431)
T PF05538_consen 1 MKLVKLSLAAAVALGAFS--TASATPLEEAIKDVD 33 (431)
T ss_pred CchHHHHHHHHHHhhhhh--hccCCcHHHHhcccc
Confidence 99887633223333 333 355665 5565543
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.52 E-value=75 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=9.2
Q ss_pred ceeeCCCCcccc--CCCEEEE
Q 031474 27 PLVDVHGNKVEA--SRDYYLV 45 (159)
Q Consensus 27 ~VlD~~G~~l~~--g~~YYI~ 45 (159)
-|-|.-.-.||. |.+|=|+
T Consensus 27 YIsD~l~v~lRsGPg~~y~Iv 47 (206)
T PRK10884 27 YVSDELNTYVRSGPGDQYRIV 47 (206)
T ss_pred EEEcceeEEEEcCCCCCCceE
Confidence 455555555552 3444444
No 39
>PRK10318 hypothetical protein; Provisional
Probab=20.15 E-value=53 Score=24.64 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=6.9
Q ss_pred ceeEeeccCCCCCC
Q 031474 54 GGLTLFRGRNELCP 67 (159)
Q Consensus 54 Gl~~~~~~~~~~CP 67 (159)
|++..+.|....|+
T Consensus 40 ~c~FiRNG~~h~~~ 53 (121)
T PRK10318 40 DCTFVRNGDEHTCK 53 (121)
T ss_pred CCEEEECCCcCCHH
Confidence 45555555443444
Done!