BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031475
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E+ + + R+FKAFV D+ NL+PK PQA K E+LEGDGG GT+ TF +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G Y VK +ID++D +N++ YT+ +GD + EK Y+ K+ AS +GG + K +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+KEEHVK +E+ + L+K++E YL +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E+ + + R+FKAFV D+ NL+PK PQA K E+L GDGG GT+ TF +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G Y VK +ID++D +N++ YT+ +GD + EK Y+ K+ AS +GG + K +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+KEEHVK +E+ + L+K++E YL +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
Query: 1 MGVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP 59
MGV +E E+ + + A ++FKAFV D+ NL+PK PQA K E+LEGDGG GT+ TF
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 60 DGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAE 119
+G HY VK +I ++D N T Y++ +GD + EK Y+ K+ ++ +GG + K ++
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 120 VYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+KEEHVK +E+ L+K++E YL +P Y
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+RMFKAF+ D L+PK PQA S+E +EG+GG GT+ FP+
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G + EK ++KI A+ +GGCV K + +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D NL+PK PQA S+E +EG+GG GT+ +FP+
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G I EK ++KI A+ +GG + K + +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D NL PK PQA S+E +EG+GG GT+ +FP+
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G I EK ++KI A+ +GG + K + +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D NL PK PQA S+E +EG+GG GT+ +FP+
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G I EK ++KI A+ +GG + K + +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D NL PK PQA S+E +EG+GG GT+ +FP+
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G + EK ++KI A+ NGG + K +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E +K ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D NL PK PQA S+E +EG+GG GT+ +FP+
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G I EK ++KI A+ +GG + K + +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAY 158
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D NL PK PQA S+E + G+GG GT+ +FP+
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G I EK ++KI A+ +GG + K + +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV +E E + + A+R+FKAF+ D L P+ PQA S+E + G+GG GT+ +FP+
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G +K VK R+D +D+ NF Y++ +G I EK ++KI A+G+GG + K + +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
+ K E+K E VK ++E G L + +E+YL+A+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MGVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP 59
M +E + +A R+FKA V + +L KA P FKS E++EGDGGVGTVT TF
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 60 DGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAE 119
DG + + D +D NF CKYT+++GD + EK VY+VK+EA G GG K
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 120 VYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLYA 159
+ K G + EE VK E++ YK +E YL ANP+++A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 1 MGVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP 59
MGV E ++V+A ++F+ FV D +LPKA P A+KS+E+ +GDGG GT+ + T P
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 60 DGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAE 119
DGG + RID ++ + T Y++ DGD +L E V + + +GG + K A
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 120 VYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVAN 154
+ K + EE++K A E+ T L+K LEAYL+AN
Sbjct: 120 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV FE E+P+AVA +++FKA DS +++PK Q +S+E++EG+GG GTV T
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
GGH V +IDA+D +F Y++ G G+ EK ++ K+ + +GG + K +
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156
+ K G+ L + ++A+ RGTGL+K +E Y++ANP+
Sbjct: 120 HTK-GDVLSDAVREEAKARGTGLFKAVEGYVLANPN 154
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 1 MGVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP 59
MGV F+ EY + +A ++++KA V D+ ++PKA + +S+E++EG+GG GT+ TF
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 60 DGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAE 119
+GG K V +I+A+D N Y++ G G+ EK ++ K+ NGG + K +
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 120 VYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156
+ K + EE K A+ RG +K +E+YL A+PD
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV FE E + +A +R++KA V D+ ++PKA +A +SIE +EG+GG GT+ T +
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
GG K V +I+A+D N Y++ G G+ EK ++ K+ NGG + K ++
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156
K + EE K A+ RG +K +E YL A+P+
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
GV FE E + VA + ++KA V D+ N++PKA +FKS+E +EG+GG GT+ TF +
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
G K V +I+++D N Y++ G + AEK +D K+ A NGG K +
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156
K E ++ +K + + L+K +EAYL+A+PD
Sbjct: 120 ETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 1 MGVTRFEREYPAAVAASRMFKAFVDSPNLL-PKATPQAFKSIEVLEGDGGVGTVTLWTFP 59
MGV E EY ++++A ++++ V+ N++ PKA P+ + E LEGDGG GT+ TF
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 60 DGGHYKQVKQRIDALDNDNFTCKYTMYDGDGIL-AVAEKGVYDVKIEASGNGGCVYKFAA 118
G + KQ ID +D +N Y++Y+G + EK V++ K+ + GC+ K
Sbjct: 66 --GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTT 123
Query: 119 EVYVK-DGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156
+ Y K D EL +++++ ER G K +E++L+ANPD
Sbjct: 124 KYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPD 162
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 1 MGVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP 59
MG E ++V+A ++F V D ++PKA A+KS+EV +GDGG GTV + T P
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 60 DGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAE 119
+G + R DA++ + + T+ DGD +L E + + + +GG + K A
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 120 VYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVAN 154
+ K + EE++K A+ + T L+K +EAYL+AN
Sbjct: 120 FHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 2 GVTRFEREYPAAVAASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD 60
G+ FE E + VA ++++KA DS ++PK + +S+E++EG+GG GT+
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 61 GGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEV 120
GH V ++DA+D N T Y++ G+G+ EK Y+ KI +GG + K +
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 121 YVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156
+ K G+ L E A+ +G GL+K +E Y++A+PD
Sbjct: 120 HTK-GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%)
Query: 2 GVTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDG 61
GV F E ++VA ++++KA + + + +SIE++EG+GGVGT+ T +G
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEG 60
Query: 62 GHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVY 121
V Q++DA+D N Y++ G G+ EK ++ K+ A GG + K + +
Sbjct: 61 DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFH 120
Query: 122 VKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
K L + DA +G G +K +E Y++ANP Y
Sbjct: 121 TKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWTFPDG 61
V + E + +A + F P+ + KA+P + ++ EGD G VG++ W +
Sbjct: 16 VGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHD 75
Query: 62 GHYKQVKQRIDALDNDNFTCKYTMYDGD 89
G K K+RI+A++ D + + +GD
Sbjct: 76 GEAKVAKERIEAVEPDKNLITFRVIEGD 103
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 30 LPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGD 89
LP P AF+ +E++ GDGGVGT+ TF G + K++ +DN++ K +G
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEG- 114
Query: 90 GILAVAEKGVYD-VKIEASGNGGCVYKFAAEVYVK 123
G L + D + + +G CV K + E +VK
Sbjct: 115 GYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVK 149
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 25 DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTF 58
D ++PK P K ++++EGDGGVGT+ ++ F
Sbjct: 25 DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNF 58
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 25 DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDG 61
D ++PK P K ++V+EGDGGVGT ++ F G
Sbjct: 25 DITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPG 61
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G + +R++ +D+D+ + + G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEH 108
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 109 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 144
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G +R++ +D+D+ + + G+
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEH 122
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 123 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 158
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G +R++ +D+D+ + + G+
Sbjct: 48 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 107
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 108 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 143
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G +R++ +D+D+ + + G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 108
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 109 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 144
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G +R++ +D+D+ + + G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 108
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 109 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 144
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G +R++ +D+D+ + + G+
Sbjct: 60 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 119
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 120 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 155
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 31 PKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDG 90
P+ K ++ GDG VG+V T G +R++ +D+D+ + + G+
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 122
Query: 91 ILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE 127
L K V V + + G VY E Y D E
Sbjct: 123 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE 158
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 29.3 bits (64), Expect = 0.88, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 2 GVT---RFEREYPAAVAASRMFKAFVDSPNLLPKATPQ 36
GVT F +E P ++ R F A ++ NLLPK P+
Sbjct: 176 GVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPE 213
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 2 GVT---RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEV 43
GVT F +E P ++ R F A ++ NLLPK P+ + + +
Sbjct: 145 GVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 189
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 RMFKAFVDSPNLLPKATPQAFKSIEVLE 45
R+ KA VD P++ P A P +K ++
Sbjct: 345 RLAKAIVDDPSIAPAAAPNLYKQYAAMD 372
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 RMFKAFVDSPNLLPKATPQAFKSIEVLE 45
R+ KA VD P++ P A P +K ++
Sbjct: 345 RLAKAIVDDPSIAPAAAPNLYKQYAAMD 372
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 RMFKAFVDSPNLLPKATPQAFKSIEVLE 45
R+ KA VD P++ P A P +K ++
Sbjct: 345 RLAKAIVDDPSIAPAAAPNLYKQYAAMD 372
>pdb|2E24|A Chain A, Crystal Structure Of A Mutant (R612a) Of Xanthan Lyase
Length = 752
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 RMFKAFVDSPNLLPKATPQAFKSIEVLE 45
R+ KA VD P++ P A P +K ++
Sbjct: 345 RLAKAIVDDPSIAPAAAPNLYKQYAAMD 372
>pdb|4GOU|A Chain A, Crystal Structure Of An Rgs-rhogef From Entamoeba
Histolytica
Length = 518
Score = 26.9 bits (58), Expect = 4.8, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 18 RMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDND 77
R ++A+VD + K Q K +EV+ + + T+ D +++ + L
Sbjct: 333 RTYQAYVDDFIKITKKDSQEVKELEVVHSQLAIFQELINTYSDINKIERISDALKLLFPF 392
Query: 78 NFTCKYTMYDG-DGILAVAEKGVYD 101
+FT +++G +GI +A +D
Sbjct: 393 SFTSIXPLFEGKNGICGIASLDRFD 417
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 104 IEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLY 144
++ +G+G C Y A + KD L E V EER T ++
Sbjct: 319 LQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 359
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 87 DGDGILAVAEKG-VYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYK 145
DGD ++AV EKG + D G F Y+K+ +LK V G YK
Sbjct: 263 DGDRLIAVDEKGNIVD---------GDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYK 313
Query: 146 VLEA 149
LEA
Sbjct: 314 ALEA 317
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 58 FPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCV---Y 114
F G KQ++Q ++ D +Y G + K VY +K+EA V
Sbjct: 2 FKIGSVLKQIRQELNYHQID-------LYSG-----IMSKSVY-IKVEADSRPISVEELS 48
Query: 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
KF+ + V E L + TG K+L + + NPDL+
Sbjct: 49 KFSERLGVNFFEILNRAGMNTKSVNETGKEKLLISKIFTNPDLF 92
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 58 FPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCV---Y 114
F G KQ++Q ++ D +Y G + K VY +K+EA V
Sbjct: 2 FKIGSVLKQIRQELNYHQID-------LYSG-----IMSKSVY-IKVEADSRPISVEELS 48
Query: 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158
KF+ + V E L + TG K+L + + NPDL+
Sbjct: 49 KFSERLGVNFFEILNRAGMNTKSVNETGKEKLLISKIFTNPDLF 92
>pdb|2A1K|A Chain A, Rb69 Single-Stranded Dna Binding Protein Core Domain
pdb|2A1K|B Chain B, Rb69 Single-Stranded Dna Binding Protein Core Domain
Length = 233
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 92 LAVAEKGVYDVKIEASGNGGCVYKF 116
+ +KG + +K++ASGNG V +F
Sbjct: 3 FSSEDKGEWKLKLDASGNGQAVIRF 27
>pdb|2ATQ|B Chain B, Rb69 Single-Stranded Dna Binding Protein-Dna Polymerase
Fusion
Length = 234
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 92 LAVAEKGVYDVKIEASGNGGCVYKF 116
+ +KG + +K++ASGNG V +F
Sbjct: 4 FSSEDKGEWKLKLDASGNGQAVIRF 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,401,948
Number of Sequences: 62578
Number of extensions: 242492
Number of successful extensions: 720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 50
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)