Query 031475
Match_columns 159
No_of_seqs 118 out of 926
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 2.1E-42 4.5E-47 256.9 18.6 150 1-154 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 3E-36 6.5E-41 222.9 20.0 146 4-153 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 7.6E-19 1.6E-23 125.5 17.2 138 5-151 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 9E-16 2E-20 109.5 19.4 108 3-122 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 1.4E-15 3.1E-20 110.1 16.7 134 6-151 1-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.7 9.8E-15 2.1E-19 105.5 15.7 139 6-151 1-140 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 7.8E-14 1.7E-18 99.9 17.7 136 4-150 2-139 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.6 1.2E-13 2.6E-18 98.3 16.1 136 6-151 1-138 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.6 1E-13 2.2E-18 100.1 13.9 135 6-152 1-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 1.4E-12 3E-17 93.2 16.1 134 5-150 2-135 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.5 3.9E-12 8.5E-17 90.7 17.2 138 6-151 2-140 (141)
12 cd08860 TcmN_ARO-CYC_like N-te 99.5 5.1E-12 1.1E-16 93.2 16.5 139 5-151 2-142 (146)
13 cd07812 SRPBCC START/RHO_alpha 99.5 5.6E-12 1.2E-16 87.6 15.6 135 7-149 2-139 (141)
14 cd05018 CoxG Carbon monoxide d 99.5 6.2E-12 1.4E-16 90.3 14.8 140 5-151 2-143 (144)
15 cd07825 SRPBCC_7 Ligand-bindin 99.4 7.8E-12 1.7E-16 90.4 14.0 139 6-151 2-143 (144)
16 cd07817 SRPBCC_8 Ligand-bindin 99.4 1.1E-11 2.3E-16 88.7 14.0 106 6-124 2-107 (139)
17 cd07814 SRPBCC_CalC_Aha1-like 99.4 1.4E-11 3.1E-16 87.9 14.1 136 6-151 2-137 (139)
18 PF03364 Polyketide_cyc: Polyk 99.4 3.9E-11 8.4E-16 85.4 15.5 126 12-147 1-129 (130)
19 cd07818 SRPBCC_1 Ligand-bindin 99.4 6E-11 1.3E-15 86.4 16.1 139 4-151 2-148 (150)
20 cd07820 SRPBCC_3 Ligand-bindin 99.4 2.1E-11 4.6E-16 88.2 12.9 108 6-122 1-111 (137)
21 PRK10724 hypothetical protein; 99.3 7.9E-11 1.7E-15 88.1 14.7 135 3-149 14-149 (158)
22 cd07824 SRPBCC_6 Ligand-bindin 99.3 2.3E-10 4.9E-15 83.6 16.2 109 5-124 2-113 (146)
23 cd07823 SRPBCC_5 Ligand-bindin 99.3 3.8E-10 8.3E-15 82.4 14.7 139 7-151 2-144 (146)
24 COG3427 Carbon monoxide dehydr 99.2 5.4E-10 1.2E-14 82.1 12.9 142 5-153 2-145 (146)
25 PF06240 COXG: Carbon monoxide 99.1 1.5E-08 3.3E-13 73.9 14.6 136 9-151 2-139 (140)
26 COG5637 Predicted integral mem 98.9 1E-08 2.2E-13 77.4 9.6 110 3-125 69-179 (217)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.9 6.1E-08 1.3E-12 69.8 12.3 139 5-153 2-145 (145)
28 cd08899 SRPBCC_CalC_Aha1-like_ 98.9 8.5E-08 1.8E-12 71.1 12.5 130 3-155 10-139 (157)
29 cd07826 SRPBCC_CalC_Aha1-like_ 98.8 3.3E-07 7.1E-12 66.8 13.3 139 6-153 2-142 (142)
30 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 1.6E-06 3.5E-11 62.9 15.7 137 6-152 2-142 (143)
31 cd08894 SRPBCC_CalC_Aha1-like_ 98.7 5.1E-07 1.1E-11 65.3 12.7 134 6-152 2-138 (139)
32 cd08893 SRPBCC_CalC_Aha1-like_ 98.7 6.5E-07 1.4E-11 63.6 13.0 134 5-152 1-135 (136)
33 cd08896 SRPBCC_CalC_Aha1-like_ 98.7 1.2E-06 2.6E-11 63.9 13.4 139 6-152 2-145 (146)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.7 5.3E-06 1.1E-10 60.5 16.6 136 5-152 1-145 (146)
35 cd08876 START_1 Uncharacterize 98.7 6.2E-06 1.3E-10 62.8 17.6 144 4-151 41-194 (195)
36 cd08897 SRPBCC_CalC_Aha1-like_ 98.6 2.3E-06 4.9E-11 61.5 13.0 128 5-152 1-132 (133)
37 COG2867 Oligoketide cyclase/li 98.5 7.1E-07 1.5E-11 65.4 8.1 112 4-124 2-113 (146)
38 COG3832 Uncharacterized conser 98.4 1E-05 2.2E-10 59.7 13.2 139 3-152 7-148 (149)
39 cd08891 SRPBCC_CalC Ligand-bin 98.4 2.7E-05 5.8E-10 56.9 14.3 137 6-152 2-148 (149)
40 PF08327 AHSA1: Activator of H 98.4 2E-05 4.4E-10 55.0 12.8 122 13-151 1-123 (124)
41 cd08901 SRPBCC_CalC_Aha1-like_ 98.2 3.7E-05 8E-10 55.4 11.5 129 6-154 2-133 (136)
42 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00022 4.7E-09 50.8 13.4 122 6-151 2-124 (126)
43 PTZ00220 Activator of HSP-90 A 98.0 0.0001 2.2E-09 53.2 9.7 122 12-151 1-126 (132)
44 cd08874 START_STARD9-like C-te 97.7 0.008 1.7E-07 46.8 16.4 144 5-151 46-203 (205)
45 cd08873 START_STARD14_15-like 97.6 0.016 3.4E-07 46.1 16.9 146 4-154 77-235 (235)
46 cd08905 START_STARD1-like Chol 97.1 0.043 9.3E-07 42.6 14.6 145 5-152 50-207 (209)
47 cd08877 START_2 Uncharacterize 97.1 0.08 1.7E-06 41.0 15.7 147 3-152 45-213 (215)
48 cd08863 SRPBCC_DUF1857 DUF1857 97.1 0.07 1.5E-06 39.2 15.3 111 15-146 18-130 (141)
49 cd08906 START_STARD3-like Chol 97.0 0.11 2.3E-06 40.5 16.2 143 5-152 50-207 (209)
50 cd00177 START Lipid-binding ST 97.0 0.087 1.9E-06 39.0 16.8 144 4-150 39-191 (193)
51 cd08913 START_STARD14-like Lip 97.0 0.12 2.5E-06 41.3 15.9 115 5-122 82-209 (240)
52 PF08982 DUF1857: Domain of un 96.9 0.052 1.1E-06 40.2 12.4 127 6-152 2-146 (149)
53 cd08903 START_STARD5-like Lipi 96.8 0.15 3.2E-06 39.5 16.4 143 6-152 48-206 (208)
54 COG4276 Uncharacterized conser 96.8 0.12 2.7E-06 37.7 14.9 114 3-125 1-120 (153)
55 cd08870 START_STARD2_7-like Li 96.5 0.26 5.6E-06 38.1 17.4 146 4-153 50-208 (209)
56 cd08868 START_STARD1_3_like Ch 96.5 0.26 5.6E-06 37.9 15.8 145 6-153 50-207 (208)
57 cd08871 START_STARD10-like Lip 96.5 0.29 6.2E-06 38.1 15.8 147 5-155 48-204 (222)
58 cd08911 START_STARD7-like Lipi 95.9 0.57 1.2E-05 36.2 15.9 146 4-153 45-206 (207)
59 cd08910 START_STARD2-like Lipi 95.7 0.74 1.6E-05 35.6 13.7 144 4-152 49-205 (207)
60 cd08914 START_STARD15-like Lip 95.6 0.58 1.3E-05 37.3 12.8 115 4-122 78-205 (236)
61 PF10698 DUF2505: Protein of u 95.6 0.65 1.4E-05 34.3 13.2 108 6-123 1-128 (159)
62 smart00234 START in StAR and p 94.5 1.5 3.3E-05 33.1 17.6 147 4-153 45-202 (206)
63 cd08867 START_STARD4_5_6-like 94.4 1.7 3.7E-05 33.3 15.8 143 5-151 47-205 (206)
64 cd08872 START_STARD11-like Cer 93.2 3.5 7.5E-05 32.7 14.7 145 5-154 53-227 (235)
65 PF11485 DUF3211: Protein of u 89.8 5.6 0.00012 29.0 9.2 41 5-47 2-42 (136)
66 KOG3177 Oligoketide cyclase/li 88.8 2.8 6.1E-05 32.8 7.4 104 10-124 74-182 (227)
67 cd08869 START_RhoGAP C-termina 88.5 9.4 0.0002 29.1 16.2 117 5-125 45-170 (197)
68 cd08908 START_STARD12-like C-t 85.0 16 0.00035 28.4 12.4 119 4-126 52-178 (204)
69 PF01852 START: START domain; 81.1 21 0.00045 26.7 17.5 147 3-155 45-204 (206)
70 KOG2936 Uncharacterized conser 55.2 48 0.001 27.4 6.2 96 4-119 173-271 (301)
71 PRK06628 lipid A biosynthesis 53.2 27 0.00058 28.2 4.6 44 115-158 238-281 (290)
72 PF02021 UPF0102: Uncharacteri 46.2 87 0.0019 20.9 5.5 66 82-155 14-79 (93)
73 PRK06553 lipid A biosynthesis 45.0 39 0.00084 27.5 4.3 44 115-158 257-300 (308)
74 cd00222 CollagenBindB Collagen 44.2 47 0.001 25.5 4.4 73 12-91 3-75 (187)
75 cd08904 START_STARD6-like Lipi 38.1 1.9E+02 0.004 22.3 15.7 139 5-149 47-201 (204)
76 PRK08419 lipid A biosynthesis 37.2 74 0.0016 25.6 4.8 24 135-158 258-281 (298)
77 PRK05645 lipid A biosynthesis 37.1 65 0.0014 25.9 4.5 40 115-158 238-277 (295)
78 TIGR02208 lipid_A_msbB lipid A 35.0 73 0.0016 25.8 4.5 39 116-158 249-287 (305)
79 PF15650 Tox-REase-9: Restrict 33.3 41 0.00088 22.7 2.2 28 50-85 25-52 (89)
80 KOG0301 Phospholipase A2-activ 33.2 1.9E+02 0.0042 26.8 7.0 74 3-84 146-226 (745)
81 PRK08733 lipid A biosynthesis 33.2 81 0.0018 25.6 4.5 40 115-158 248-287 (306)
82 PRK08706 lipid A biosynthesis 30.9 84 0.0018 25.2 4.2 40 115-158 232-271 (289)
83 PRK14680 hypothetical protein; 30.0 2E+02 0.0044 20.7 5.6 67 82-156 24-90 (134)
84 cd08902 START_STARD4-like Lipi 29.6 2.7E+02 0.0059 21.7 14.4 141 6-151 49-201 (202)
85 PRK08734 lipid A biosynthesis 29.0 1E+02 0.0022 25.1 4.4 23 136-158 256-278 (305)
86 PRK06860 lipid A biosynthesis 29.0 1E+02 0.0023 25.0 4.4 40 115-158 251-290 (309)
87 PRK12497 hypothetical protein; 28.7 2.1E+02 0.0045 20.0 5.7 67 82-156 24-90 (119)
88 TIGR02207 lipid_A_htrB lipid A 28.6 1.1E+02 0.0023 24.8 4.4 40 115-158 245-284 (303)
89 PRK14681 hypothetical protein; 28.5 2.5E+02 0.0053 21.0 6.0 68 82-156 61-128 (158)
90 PRK14688 hypothetical protein; 27.3 2.3E+02 0.0049 20.0 5.4 66 82-155 24-89 (121)
91 PRK08943 lipid A biosynthesis 26.9 1.2E+02 0.0026 24.7 4.4 40 115-158 257-296 (314)
92 PF13410 GST_C_2: Glutathione 26.8 1.2E+02 0.0027 18.0 3.6 23 133-155 4-26 (69)
93 PF03279 Lip_A_acyltrans: Bact 26.7 2.2E+02 0.0048 22.6 5.9 41 114-158 246-286 (295)
94 cd07984 LPLAT_LABLAT-like Lyso 25.5 1.5E+02 0.0033 21.6 4.5 23 136-158 162-184 (192)
95 PRK05646 lipid A biosynthesis 25.0 1.3E+02 0.0027 24.5 4.2 40 115-158 249-288 (310)
96 PF03000 NPH3: NPH3 family; I 23.6 59 0.0013 26.3 2.0 19 139-157 218-236 (258)
97 KOG3294 WW domain binding prot 22.0 3.7E+02 0.008 21.7 6.1 53 86-151 84-136 (261)
98 PF10651 DUF2479: Domain of un 22.0 3.3E+02 0.0071 20.0 7.1 56 66-123 69-124 (170)
99 PF04780 DUF629: Protein of un 21.0 1.4E+02 0.003 26.4 3.8 81 65-149 248-339 (466)
100 PRK14684 hypothetical protein; 20.9 3.1E+02 0.0067 19.3 5.6 67 82-156 24-90 (120)
101 PRK06946 lipid A biosynthesis 20.6 1.9E+02 0.0041 23.3 4.4 22 137-158 254-275 (293)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=2.1e-42 Score=256.86 Aligned_cols=150 Identities=40% Similarity=0.680 Sum_probs=139.3
Q ss_pred CccEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccc-eEEEEEeeCCCceeEEEEEEEEEeCCCc
Q 031475 1 MGVTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVG-TVTLWTFPDGGHYKQVKQRIDALDNDNF 79 (159)
Q Consensus 1 M~~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~G-sir~~~~~~g~~~~~~kErl~~~D~~~~ 79 (159)
|++++++.|+++++||+++|+++++.++++|+++|++|+|++++||||++| |||.|+|.+|++...+|||++.+|++++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 899999999999999999999999878889999999999999999998877 9999999999999999999999999999
Q ss_pred eEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhC
Q 031475 80 TCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVAN 154 (159)
Q Consensus 80 ~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~ 154 (159)
+++|+++||+++. .|++|..+++++|.++|+|+++|+++|++.+++.++|+. +++.+.+|+|+||+||++|
T Consensus 81 ~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~---~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 81 TITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEK---YLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHH---HHHHHHHHHHHHHHHHhcC
Confidence 9999999999985 699999999999999999999999999999988866663 4577999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=3e-36 Score=222.86 Aligned_cols=146 Identities=38% Similarity=0.553 Sum_probs=129.7
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCC-CCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEE
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSP-NLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~-~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
++++.+++|+||||++|++++||. .+.+.|+| .|++|++++|+|++||||.|+|.+|+++.+++|||+.+|+++|+++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 478999999999999999999998 43455666 7999999999999999999999988777899999999999999999
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhh
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVA 153 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~ 153 (159)
|++++|+++..+|++|+++++|+|.++++|+++|+++|++.+++.++|.. +++.+..+++.++.|++.
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEE---IKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHH---HHhHHHHHHHHHHHHHhc
Confidence 99999998744699999999999998889999999999999988666663 467888889999998875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.83 E-value=7.6e-19 Score=125.53 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=114.5
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
.++.+++|++|+++||+++.|+.+ +++|+|. +++++.+++..++|+++.+.+..| ..++++++.+|+.+++++|+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 478899999999999999999999 8999996 788888766546899999988765 36889999999987899999
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
+.+|+. ++.++.++++++|.++|+|.++|+.+|++... .+.+.....+.+.....++.|++++
T Consensus 77 ~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 77 IVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred ecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 988742 47789999999999887899999999998865 3334433556667788888888876
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.74 E-value=9e-16 Score=109.54 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=88.5
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEE
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
+.+++.++.|++||++||+++.|+.+ +++|.|+ +.+++..+++ ++|..+.+..... ..+++++..+|++++.+.
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEEE
Confidence 46899999999999999999999999 9999996 8898977633 4466566664331 379999999998899999
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEE
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYV 122 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~ 122 (159)
|++. . .++.++.++++++|.++| |.++|+.+|++
T Consensus 75 ~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 9985 1 247788999999999865 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.71 E-value=1.4e-15 Score=110.11 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=97.0
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccce-------EEEEEeeCCCceeEEEEEEEEEeCCC
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGT-------VTLWTFPDGGHYKQVKQRIDALDNDN 78 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gs-------ir~~~~~~g~~~~~~kErl~~~D~~~ 78 (159)
++.++.|++|+++||+++.|+++ +|+|+|+ +++++++++.+. +. .+.+...- ...+..++.+.++..
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 74 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKF---EARVVLELREREEFP 74 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeee---eEEEEEEEEEecCCC
Confidence 36789999999999999999999 9999997 889998876531 21 11111100 123455566666667
Q ss_pred ceEEEEEEecCCCccceeeEEEEEEEeecCC-CccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 79 FTCKYTMYDGDGILAVAEKGVYDVKIEASGN-GGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 79 ~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~-g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
+.+.|++++|+ +..|.+++++.|.++ |+|.++|+.+|++... .|.+-......+....++++|.+.+
T Consensus 75 ~~i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 75 RELDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred ceEEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998774 678999999999988 6899999999998752 2222222344555778888887654
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.66 E-value=9.8e-15 Score=105.48 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=96.0
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
++.+++|++|+++||+++.|+.+ +|+|+|. .+++.++++++...++.+....++..... +....+|++.+++.|..
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEEE
Confidence 46899999999999999999999 9999996 45555554332224665565533322222 34445788788899998
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
+++.. .+..+.++++|+|.++++|.|+|..+|+............ +.....+..++++|.+++
T Consensus 77 ~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 77 EEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred eeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 87543 3788999999999987889999999999875322112222 233333566677666653
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.63 E-value=7.8e-14 Score=99.85 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=91.5
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-CccceEEEEEeeCCCceeEEEEEEEEEeCCCceEE
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
.+++.++.|++|+++||+++.|+.+ +|+|+|. +.+++.++++ ++.+....+++..++-.....-+++ .++ .++++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEE
Confidence 5789999999999999999999999 9999996 8899986543 3334444455543321111112222 223 67899
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhH-HHHHHHHHHHHHHHHH
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK-DAEERGTGLYKVLEAY 150 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
|+..++. +..++.+++++.|.++ +|.++|+.++++... .+.-..+ ........+++.|.+|
T Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 78 WTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVP--LPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecCC--CCHHHHHHhhhHHHHHHHHhHhhh
Confidence 9998775 3677889999999876 799999999997552 1222222 2222345555555554
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.2e-13 Score=98.28 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=96.1
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-CccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
++.++.|++|+++||+++.|+.+ +++|.|+ +.+++.+.+. .++|+...+....++....++++++.+|+ ++.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEE
Confidence 36789999999999999999999 9999997 6788876543 36788888776544333467899998885 4688888
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
..+++ + .+..++++.|.++ +|.++|+.+|+...-.......+ ......+.+++++|.+++
T Consensus 78 ~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 78 GSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred ecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 76552 2 2689999999855 69999999999732111111122 223334566666666654
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.58 E-value=1e-13 Score=100.09 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=97.9
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
++.+++|++|+++||+++.|.++ +|+|+|+ +++++++++++ .+....+...-++....+..++. +++ .++++++.
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 36789999999999999999999 9999997 88999988765 23444455543332234445555 666 56789998
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHHh
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~ 152 (159)
++|+ ++.+.+++++.|.++|+|.|+|..+|++.... + .... .-+.+....+++++.+.+.
T Consensus 76 ~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l-~-~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL-L-EALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH-H-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8773 67789999999999889999999999987532 1 1111 2334556677777766543
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.53 E-value=1.4e-12 Score=93.23 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=91.2
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|+||+++||+++.|+.+ +|+|+|+ +++++...+..++|+...++...+ ..+..++.++++.+ +++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCC-EEEEE
Confidence 688999999999999999999999 9999996 788887654325677666654432 24677888888665 67777
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAY 150 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~ 150 (159)
... + ...+..++++++.++++|.++|+.+|.........+...+.+.......++.|.+.
T Consensus 76 ~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 135 (138)
T cd08862 76 GPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAA 135 (138)
T ss_pred ecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 532 1 23456899999987678999999988743211111111123334455555555544
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=3.9e-12 Score=90.68 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=92.9
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCC-CceeEEEEEEEEEeCCCceEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDG-GHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
++.++.|++|+++||+++.|+.+ +++|+|. +.+++... .++|+...+.+..+ +....+.+++.++|+.+ ++.|+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~-~~~~~ 76 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPPR-RLAWR 76 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCC-EeEEE
Confidence 67899999999999999999999 9999985 55654321 35677777766532 23346788899888854 77899
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
...++.. .-....+++|.|.++++|.++|...|...............+.+....+++.|.+++
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 77 GGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred ecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 7666432 334668999999867789999998876432211111111233444555555555543
No 12
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.48 E-value=5.1e-12 Score=93.22 Aligned_cols=139 Identities=13% Similarity=0.098 Sum_probs=91.1
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKY 83 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
.++.+++|++||++||+++.|..+ +|.|+|. +.++++++.++ +.|+--.+....++....+.-+.. +|+..+++.+
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~-~~~~~~~i~~ 78 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT-LDPVNRTVRA 78 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE-ecCCCcEEEE
Confidence 467899999999999999999999 9999996 88999887543 445322222222332333322222 6788888876
Q ss_pred EEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 84 TMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 84 ~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
+-.... ++....++++|+|.++| |.|++..+|+..++.......+ +.....+...++.|.+.+
T Consensus 79 ~~~~~~----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~a 142 (146)
T cd08860 79 RRVETG----PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKI 142 (146)
T ss_pred EEecCC----CcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHh
Confidence 411111 38889999999999654 9999999999775443222222 223333455555554443
No 13
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=5.6e-12 Score=87.60 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=96.0
Q ss_pred EEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-CccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 7 EREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 7 ~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
+.++.|++|+++||+++.|+.+ +++|.|+ +.+++..++. ...|....+.+..+ .....+.++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEEE
Confidence 5789999999999999999999 9999997 7888876654 35566665555422 22357788887777 55788998
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCC--CCChhhhHHHHHHHHHHHHHHHH
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGE--ELKEEHVKDAEERGTGLYKVLEA 149 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~le~ 149 (159)
..++.. ..+..++++.+.++++|.++|+.++...... ...+...+...+.+..+++.++.
T Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 78 TGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred ecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 776532 5688999999987658999999999977643 12223223333445555555554
No 14
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.45 E-value=6.2e-12 Score=90.32 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=89.9
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.+++|+++||+++.|+.+ +++|+|+ +++++.+++++ ......+.+.+-+..-..+-++.++|+. +++.++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEEE
Confidence 678999999999999999999999 9999997 77877665331 1111122221111111224555555554 567777
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCC-CChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE-LKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
....+.. ....+.+++++.|. +++|.++|+++|+..+... .+...+ +.+.+.+..+++.|.+.+
T Consensus 78 ~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 78 GEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5443322 25679999999998 6789999999999775322 122222 334444566666666543
No 15
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=7.8e-12 Score=90.40 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=92.8
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC--CccceEEEEEeeC-CCceeEEEEEEEEEeCCCceEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD--GGVGTVTLWTFPD-GGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~--g~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~~~ 82 (159)
++.+++|+||+++||+++.|+.+ +|+|.|..... ....++ -++|+...+.... |++ ..+..+++++++.+ +++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR-HPEIDGSGTVR-EAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc-cceeCCCCccc-cccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EEE
Confidence 67899999999999999999999 99999852222 222333 3678887777654 333 35667788877766 578
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
|+..-.+. +......++++++.++|+|.++++.+|...+.....+...........+.++.|++|+
T Consensus 78 ~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 88531111 1233567889999877889999999988554211001111123456778888888876
No 16
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=1.1e-11 Score=88.69 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=78.9
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
++.++.|++|+++||+++.|+.+ +|+|.|+ +++++.+.+. +.-..+.+..| ....+..++..+++.+ .+.|..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g-~~~~~~~~v~~~~~~~-~i~~~~ 74 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAG-LSVEWDAEITEQVPNE-RIAWRS 74 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCC-CcEEEEEEEeccCCCC-EEEEEE
Confidence 67899999999999999999999 9999996 7888876442 22222223223 3345666666655554 588987
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcC
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKD 124 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~ 124 (159)
..|. + .+.+++.+.|.++++|.+++++.|++..
T Consensus 75 ~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 75 VEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred CCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 6553 3 4679999999877789999999999764
No 17
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.41 E-value=1.4e-11 Score=87.93 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=93.6
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
++.+++|+||+++||+++.|+.+ +|+|.|+ +..++.....| |+.+.+....++....+..++..+|+. +++.|+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~ 76 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTW 76 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEe
Confidence 67889999999999999999999 9999995 22322211223 666655443333334678889988866 5788998
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
..++.. +.-....+++|.|.+ ++|.++|+.++...... .+............++..|.+|+
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 77 AFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred cccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 766431 134578889999997 57999999999875321 12222344556667777777765
No 18
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.40 E-value=3.9e-11 Score=85.42 Aligned_cols=126 Identities=18% Similarity=0.249 Sum_probs=85.9
Q ss_pred eccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEEEecCCC
Q 031475 12 AAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGI 91 (159)
Q Consensus 12 i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eg~~~ 91 (159)
|+||+++||+++.|+.+ +|.|+|. ++++++++.++. +..-.+....++....+..++. .++..+ +.+...+|+
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~-- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVT-EDPPER-IRFEQISGP-- 73 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEE-EECTTT-EEEESSETT--
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEE-EEEeee-eeeeecCCC--
Confidence 68999999999999999 9999996 889999887653 3333455554433345666666 344444 777877774
Q ss_pred ccceeeEEEEEEEeecCC--CccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHH
Q 031475 92 LAVAEKGVYDVKIEASGN--GGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVL 147 (159)
Q Consensus 92 ~~~~~~y~~ti~v~~~~~--g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~l 147 (159)
++.+.++++++|.++ |+|.++++.+|+..+....+.... ....+....++++|
T Consensus 74 ---~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 74 ---FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp ---EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999975 468888888888755444333332 22233344555544
No 19
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=6e-11 Score=86.41 Aligned_cols=139 Identities=18% Similarity=0.095 Sum_probs=91.2
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceee---EEE--EcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCC
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKS---IEV--LEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDN 78 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s---~~~--~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~ 78 (159)
.+++.++.|++|+++||+++.|+.+ +|+|.|. +.. +.. .+++.++|+...+....+. .....++..+++ +
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-N 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-C
Confidence 4689999999999999999999999 9999995 332 221 1233467887777655421 133456776765 4
Q ss_pred ceEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCC--C-ChhhhHHHHHHHHHHHHHHHHHH
Q 031475 79 FTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE--L-KEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 79 ~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~k~le~~l 151 (159)
+++.|++..+++. + -++..+++++|. +|||.++|+.+|+...... . .......+.+...+.++.|.+++
T Consensus 77 ~~i~~~~~~~~~~--~-~~~~~~~~~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 77 ERIEYELRFIKPF--E-ATNDVEFTLEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred cEEEEEEEecCCc--c-ccceEEEEEEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 5789998754432 1 257899999999 5679999999999553211 0 01111223344555666666554
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=2.1e-11 Score=88.16 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=85.1
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-C--ccceEEEEEeeCCCceeEEEEEEEEEeCCCceEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-G--GVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g--~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
++.+++|++|+++||+.+.|+.+ +|+|+|+ +.++++++.+ | .+|+.-.+.+...+-...++-+++.+++. +.++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~-~~f~ 77 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPP-RRFV 77 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCC-CeEE
Confidence 46889999999999999999999 9999997 7789987533 2 45788888877554223566677766654 4688
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEE
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYV 122 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~ 122 (159)
++...|+ +..+..+..+.|.++ ||.++++++|+.
T Consensus 78 ~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 78 DEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred EEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 8877764 566788999998865 699999999996
No 21
>PRK10724 hypothetical protein; Provisional
Probab=99.34 E-value=7.9e-11 Score=88.08 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=95.7
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEE
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
+..++.++.+++|++++|+++.|.++ +|+|+|. .+++++++.++. +.+..++..-++-...+..|.. +++++ ++.
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 44788999999999999999999999 9999996 778888775432 2344444443332355666655 55554 789
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHH
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEA 149 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~ 149 (159)
+.+++|+ ++.+.+.|+|.|.++++|.|++..+|+...... ...+ ....+.+..|.+++++
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~--~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLI--ELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEchHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999884 788999999999987789999999999654211 1111 1233445556655554
No 22
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=2.3e-10 Score=83.62 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=78.0
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEc--CCCccceEEEEEeeCC-CceeEEEEEEEEEeCCCceE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLE--GDGGVGTVTLWTFPDG-GHYKQVKQRIDALDNDNFTC 81 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~e--G~g~~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~ 81 (159)
.++.+..|++|+++||++++|+.+ +|+|.|+ +.+++.++ ++.++|+.-++..... +....+.-++.++++ .+.+
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~ 78 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLL 78 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEE
Confidence 367788999999999999999999 9999996 88988876 3336676655443321 211244555565544 5577
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKD 124 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~ 124 (159)
+|+. +|+ +. ...+++|.|.+ +||.++++.+++...
T Consensus 79 ~~~~-~g~-----~~-~~~~~~~~~~~-~gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGD-----LE-GVGRWTLAPDG-SGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEe-----ee-EEEEEEEEEcC-CCEEEEEEEEEEcCH
Confidence 8874 564 22 36889999974 469999999999643
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=3.8e-10 Score=82.40 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=83.1
Q ss_pred EEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEE--EEEEEEEeCCCceEEEE
Q 031475 7 EREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQV--KQRIDALDNDNFTCKYT 84 (159)
Q Consensus 7 ~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~--kErl~~~D~~~~~~~y~ 84 (159)
+.+++|++||++||+++.|+.+ ++.|+|+ +++++.+ |++... -.+++..++-...+ +=++..++++.+++.++
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~-~~~~~pg-~~~~~~~-~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIER-VAPCLPG-ASLTEVE-GDDEYK--GTVKVKLGPISASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHH-HHhcCCC-ceecccc-CCCeEE--EEEEEEEccEEEEEEEEEEEEeccCCCcEEEEE
Confidence 5689999999999999999999 9999997 8787754 322211 12233222110112 12455566567787776
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCC-CCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGE-ELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
.-..+.....--....++++.| .+|+|.++|+++++..+.. ......+ +.+.+.+..+++.|.+.+
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 4431111001114667888888 4568999999999866532 2222333 233444566666666554
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.21 E-value=5.4e-10 Score=82.07 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=99.0
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
.++.++.|++|+++||+.+.||.. +...+|+ ++|++. +|+.-.+.+| +.+.+=...-..+=++..+|++.++++.+
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~-~a~ciPG-~qs~e~-~g~e~~~~v~-l~ig~l~~~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQ-VAACIPG-VQSVET-NGDEYTAKVK-LKIGPLKGTFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHH-HHhhcCC-cceeee-cCCeEEEEEE-EeecceeEEEEEEEEEccccCCCcEEEEE
Confidence 478899999999999999999999 8899998 999995 5663112221 12211111112344666678888898877
Q ss_pred EEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCC-CCChhhhH-HHHHHHHHHHHHHHHHHhh
Q 031475 85 MYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGE-ELKEEHVK-DAEERGTGLYKVLEAYLVA 153 (159)
Q Consensus 85 ~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~k~le~~l~~ 153 (159)
--+|..- .+-+..+.++++|.++| |++.|.+.-+-.+.. ..-+..++ .+++.+..+++.|.++|.+
T Consensus 78 g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 78 GSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred eeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6553332 47778899999999776 999999998876532 33344442 4555678888888888764
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=99.05 E-value=1.5e-08 Score=73.92 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=82.6
Q ss_pred EEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEEEec
Q 031475 9 EYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDG 88 (159)
Q Consensus 9 e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eg 88 (159)
+++|++|+++||+++.|+.. +..++|+ +++++.++ +.--+.++ +.+.+=...-..+=++..+|++++.. .++-..
T Consensus 2 s~~v~a~~~~vw~~l~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~~-v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~g~ 76 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPEN-LARCIPG-VESIEKVG-DEYKGKVK-VKVGPIKGTFDGEVRITEIDPPESYT-LEFEGR 76 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHH-HHHHSTT-EEEEEEEC-TEEEEEEE-EESCCCEEEEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHH-HHhhCCC-cEEeeecC-cEEEEEEE-EEeccEEEEEEEEEEEEEcCCCcceE-eeeecc
Confidence 68899999999999999998 8899998 89998765 41112222 12111000112334566677777652 333222
Q ss_pred CCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCC-CCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 89 DGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGE-ELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 89 ~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
+.. .-.+..+.+++...++++|.+.|+++++..+-. ......+ ..+.....++++.|++.|
T Consensus 77 g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 77 GRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp ECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 134566777777766666999999999977632 3334444 334445667777776654
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.93 E-value=1e-08 Score=77.43 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=88.5
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee-CCCceeEEEEEEEEEeCCCceE
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP-DGGHYKQVKQRIDALDNDNFTC 81 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~ 81 (159)
...++.+++|++|+++||.+++|+.+ +|.||.+ +.||++.+... .+|+.. +++..-.++-+|+ -|..+.+|
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~I 140 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGERI 140 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcEE
Confidence 47899999999999999999999999 9999986 99999876653 355554 3443345566666 58889999
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDG 125 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~ 125 (159)
.|+-++|.-+++ ++.++|.+..+..|+|+.+.+|.+-++
T Consensus 141 ~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 999999965432 688999999877899999999996543
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.89 E-value=6.1e-08 Score=69.75 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=82.1
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
.++.++.|+||+++||+++.|+.. +++|.|... ....-|.+..|. +.+..+ ......-++..+++.+ ++.|+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~-~~~~~~~~i~~~~p~~-~l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGY-EHGVFPVTVVEVDPPR-RFSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhh-hhhcccccC--CCcccCCcceeE---EecCCC-CccceEEEEEEeCCCc-EEEEE
Confidence 578999999999999999999998 899998532 111112222232 333321 1113445677677666 55777
Q ss_pred EEecCC---Cc-cceeeEEEEEEEeecCCCccEEEEEEE-EEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhh
Q 031475 85 MYDGDG---IL-AVAEKGVYDVKIEASGNGGCVYKFAAE-VYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVA 153 (159)
Q Consensus 85 ~~eg~~---~~-~~~~~y~~ti~v~~~~~g~s~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~ 153 (159)
...... .+ ..-.....+++|++.+ ++|.++++.. |...+.... ........+.-..++..|++||-+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~-~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERR-AEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHhcC
Confidence 543220 00 0122356888999975 5699999877 432211110 111223445567888899888853
No 28
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.86 E-value=8.5e-08 Score=71.07 Aligned_cols=130 Identities=16% Similarity=0.137 Sum_probs=87.6
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEE
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCK 82 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
..+++.+++|++|+++||+++.|+.. +++|.|.. ..+-.+|....+.+...+ .....-++.++|+.+ ++.
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~~-~l~ 79 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPER-LARWFAPG-------TGDLRVGGRVEFVMDDEE-GPNATGTILACEPPR-LLA 79 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHHH-HHhhcCCC-------CCCcccCceEEEEecCCC-CCccceEEEEEcCCc-EEE
Confidence 35789999999999999999999998 99999842 122234444455554311 124566777777765 667
Q ss_pred EEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCC
Q 031475 83 YTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANP 155 (159)
Q Consensus 83 y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 155 (159)
|+...++ .....+++|++.+ |+|.++...++.+.. .......+.-..++..|.+|+-+.+
T Consensus 80 ~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 80 FTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 8765433 1235678888865 679998888876433 1112234566788889999987765
No 29
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=3.3e-07 Score=66.77 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=81.6
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee-CCCceeEEEEEEEEEeCCCceEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP-DGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
++.+..++||+++||+++.|+.. +.+|.+..--.+...+.|-.+|..-.+.+. +++....+.=++.++++.++ +.|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~-l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPER-IVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEEE
Confidence 56788899999999999999998 677665431222233344333333334443 33322234446677777664 4454
Q ss_pred EE-ecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhh
Q 031475 85 MY-DGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVA 153 (159)
Q Consensus 85 ~~-eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~ 153 (159)
-- ++.. -.....++++.+.+ |+|.++.+..|...... .........+.-..++..|++||.+
T Consensus 80 ~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~--~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 80 EEFEGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEAR--DGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred eEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHHH--HHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 32 2221 12246788888874 67999987665321100 0011124456678899999999863
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=1.6e-06 Score=62.92 Aligned_cols=137 Identities=21% Similarity=0.199 Sum_probs=80.5
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCC-ceeeEEEEcCCCccceEEEEEee-CCCceeEEEEEEEEEeCCCceEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQ-AFKSIEVLEGDGGVGTVTLWTFP-DGGHYKQVKQRIDALDNDNFTCKY 83 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~-~v~s~~~~eG~g~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
++.+..++||+++||+++.|+.. +.+|+.+ ---.++..+.+-.+|..-.+.+. .++......=++.++|+.+ ++.|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEEE
Confidence 56678899999999999999998 7777753 11112223333233333333333 3333233444667777766 4455
Q ss_pred EE--EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 84 TM--YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 84 ~~--~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+. -.++.. ......++.+.+.+ |+|.++.+...-..++. +........-..++..|++||.
T Consensus 80 t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 80 TYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 53 222221 22245788888874 67999988776322211 1122344567788899988874
No 31
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=5.1e-07 Score=65.30 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=78.6
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccC-CceeeEEEEcCCCccceEEEEEe-eCCCceeEEEEEEEEEeCCCceEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATP-QAFKSIEVLEGDGGVGTVTLWTF-PDGGHYKQVKQRIDALDNDNFTCKY 83 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P-~~v~s~~~~eG~g~~Gsir~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
+..+..|+||+++||+++.|+.. +.+|++ .-+.. ...+.+..+|..-.+.+ .+++..-...=+++++++.+ +|.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 56788999999999999999998 777763 32221 11223323333333333 22332112334677787776 5677
Q ss_pred EEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHHh
Q 031475 84 TMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 84 ~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~ 152 (159)
+...++ . ....++++.|.+ |+|.++.+..|..... . .... ....+.-..++..|++||.
T Consensus 79 t~~~~~-----~-~~~v~~~~~~~~-~gT~ltl~~~~~~~~~-~--~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSGP-----P-RFRLTVTFEEQG-GKTRLTWRQVFPTAAE-R--CEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccCC-----C-cEEEEEEEEECC-CCEEEEEEEEcCCHHH-H--HHHHHhCHHHHHHHHHHHHHHHHh
Confidence 753331 1 145788898875 7899998876531100 0 0111 1234556788888988874
No 32
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.72 E-value=6.5e-07 Score=63.57 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=80.0
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEE
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYT 84 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|+|||++||+++.|+.. ++.|.++.. .+++-.+|.--.+.....+. ..+.=++.++++.+ ++.|+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~~~~-~l~~~ 72 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESDPPR-RLVHT 72 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEecCCC-eEEEE
Confidence 478899999999999999999998 899987621 12332333322333332111 12344666676554 56666
Q ss_pred EEecCCC-ccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 85 MYDGDGI-LAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 85 ~~eg~~~-~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
...++.. ...-.....++.+.+.+ ++|.++.+.+-.+.+ +............+++.|+++|-
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 73 WRAVWDPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EecCCCcccCCCCCEEEEEEEEecC-CcEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence 5433221 00123467788888875 467777666643221 12223345567788889888873
No 33
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=1.2e-06 Score=63.87 Aligned_cols=139 Identities=13% Similarity=0.014 Sum_probs=76.8
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCc-eeeEEEEcCCCccceEEEEEe-eCCCceeEEEEEEEEEeCCCceEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQA-FKSIEVLEGDGGVGTVTLWTF-PDGGHYKQVKQRIDALDNDNFTCKY 83 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~-v~s~~~~eG~g~~Gsir~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
+..++.|+||+++||+++.|+.. +.+|++.. . ++...+.|-.+|..-.+.+ .+++..-...=++.++|+.++ +.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~-l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPEL-LKQWFCPKPW-TTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGER-LVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHH-HhccCCCCCc-cceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCE-EEE
Confidence 56788999999999999999998 66665421 1 1111222312222323333 233332234556788888774 455
Q ss_pred E--EEecC-CCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 84 T--MYDGD-GILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 84 ~--~~eg~-~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+ +.++. +...+ ....++++++. +|+|.++.+..+... ............+.-..++..|++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~-~~gT~Ltl~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDE-GGGTRYTARARHWTE--ADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEec-CCcEEEEEEEEeCCH--HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 5 32221 11111 14678899986 467999876544211 000001001124567888999999875
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.66 E-value=5.3e-06 Score=60.46 Aligned_cols=136 Identities=19% Similarity=0.119 Sum_probs=79.8
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccC-CceeeEEEEcCCCccceEEEEE--eeC------CCceeEEEEEEEEEe
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATP-QAFKSIEVLEGDGGVGTVTLWT--FPD------GGHYKQVKQRIDALD 75 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P-~~v~s~~~~eG~g~~Gsir~~~--~~~------g~~~~~~kErl~~~D 75 (159)
+++.+..|+||+++||+++.|+.. +.+|.+ .-+ .+...+.+-.+|..-.+. +.. ++......=++.+++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 356778899999999999999998 777765 322 222222332223222222 222 122123444677788
Q ss_pred CCCceEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 76 NDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 76 ~~~~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+.+ +|.|+..-.+... + .....++.+++.+ |+|.++++...-+.. .......+.-..++..|++||-
T Consensus 79 p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~------~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 79 PNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG------IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred CCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch------hhhhHHHHHHHHHHHHHHHHhc
Confidence 777 5566643222111 1 2346888888875 679999888743211 1112345677888999999875
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.66 E-value=6.2e-06 Score=62.76 Aligned_cols=144 Identities=13% Similarity=0.021 Sum_probs=89.3
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCC---ceeEEEEEEEEEeCCCce
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGG---HYKQVKQRIDALDNDNFT 80 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~---~~~~~kErl~~~D~~~~~ 80 (159)
..+..+..|++||+++|+++.|.+. .|+|.|. +.++++++..+.--.+-.+.+.... +...+-.+-...+.++..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 5678888999999999999999998 9999996 8899988865321222223332211 111222221223332344
Q ss_pred EEEEEEecCC--C-ccc---eeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 81 CKYTMYDGDG--I-LAV---AEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 81 ~~y~~~eg~~--~-~~~---~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
+...+...+. + ... ...+.+.+.++|.++++|.+++...+++.+ .. |...+ ..+......++++|++.+
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g-~i-P~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGG-SI-PGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCC-CC-CHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444433321 1 011 467788899999988899999999888864 22 23333 334445667777777653
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=2.3e-06 Score=61.46 Aligned_cols=128 Identities=14% Similarity=0.185 Sum_probs=77.3
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceee--EEEEcCCCccceEEEEEee-CCCc-eeEEEEEEEEEeCCCce
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKS--IEVLEGDGGVGTVTLWTFP-DGGH-YKQVKQRIDALDNDNFT 80 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s--~~~~eG~g~~Gsir~~~~~-~g~~-~~~~kErl~~~D~~~~~ 80 (159)
|++.++.++||+++||+++.|+.. +.+|++. ... +...+.|-.+|..-.+.+. .++. ...+.=++.++++.+ +
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~-~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHK-L 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCC-E
Confidence 467889999999999999999998 8888543 111 1112233234444333332 2221 112344566677665 6
Q ss_pred EEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 81 CKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 81 ~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+.|+..++ ...+++++|.+ |+|.++.+ +...+. .........-..++..|++||.
T Consensus 78 l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~-----~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 IEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENE-----NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence 67885321 25789999874 67988865 332221 1112344667888899999884
No 37
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.50 E-value=7.1e-07 Score=65.39 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=84.7
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEE
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKY 83 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
-.++.+.-++.+|+++|+++.|... .|+.+|. .....+.+.++ ...+-.++..-.+=-++..-|.. +++..+.|.-
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence 3578899999999999999999999 9999995 77777777763 22444444432221134444544 5666668877
Q ss_pred EEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcC
Q 031475 84 TMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKD 124 (159)
Q Consensus 84 ~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~ 124 (159)
++++|+ ++...++|+++|.++++|.|+...+|+...
T Consensus 78 ~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 78 KLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 888885 888899999999877899999999999775
No 38
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1e-05 Score=59.70 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=77.7
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCc-eE
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNF-TC 81 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~-~~ 81 (159)
...+..+..|++|+++||+++.|+.. +++|+.+--.+....-|. +....+.... ++.....-++.++++..| .|
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~-g~~~~~~~~~~~v~p~~rIv~ 81 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPEL-LARWFMPGGAEFDARTGG---GERVRFRGPD-GPVHSFEGEYLEVVPPERIVF 81 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHH-HHhhcCCCCCccceecCC---ceEEeeecCC-CCeeecceEEEEEcCCcEEEE
Confidence 36789999999999999999999997 888876211011111111 2222333332 222345567777777764 33
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHH--HHHHHHHHHHHHHHHHh
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKD--AEERGTGLYKVLEAYLV 152 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~le~~l~ 152 (159)
+|..-+++. +...-..++++++..+|+ +++..........+.....+. ..+.-.+++..++++|.
T Consensus 82 tw~~~~~~~---~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 82 TWDFDEDGE---PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EeccCCCCC---cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 444433332 223457888888876664 222233333222222222211 25667888888888774
No 39
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.39 E-value=2.7e-05 Score=56.88 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=75.1
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCccccc-CCc------eeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCC
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKAT-PQA------FKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDN 78 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~-P~~------v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~ 78 (159)
++.++.|+||+++||+++.| . +.+|. |.. ...|++.-..| |..+ +.. .++. ....=++.++++.+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~-~~g~-~~~~g~v~~v~p~~ 73 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIG-EDGT-ECEWGTVLAWEPPS 73 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-Eec-CCCc-EeceEEEEEEcCCC
Confidence 57899999999999999998 3 44554 431 12333211223 3333 222 2332 12345677788776
Q ss_pred ceEEEEEE-ecCCCc-cceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCC-CChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 79 FTCKYTMY-DGDGIL-AVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEE-LKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 79 ~~~~y~~~-eg~~~~-~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
++.|+-. ..+..+ ... .-..++++++.++++|.++.+........+. ..........+.-..++..|++||-
T Consensus 74 -~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 74 -RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred -EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 4456643 111110 011 2368889999764689999888865432110 0011111223455678888888874
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.38 E-value=2e-05 Score=54.97 Aligned_cols=122 Identities=14% Similarity=0.205 Sum_probs=73.0
Q ss_pred ccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEEEecCCCc
Q 031475 13 AVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGIL 92 (159)
Q Consensus 13 ~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eg~~~~ 92 (159)
+||+++||+++.++.. +.+|.+......+. ..| |+++. . .+++......=+++++++.++ |.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t~~~~-~~~W~~~~~~~~~~--~~G--g~~~~-~-~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~- 71 (124)
T PF08327_consen 1 DAPPERVWEALTDPEG-LAQWFTTSEAEMDF--RPG--GSFRF-M-DPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDP- 71 (124)
T ss_dssp SSSHHHHHHHHHSHHH-HHHHSEEEEEEEEC--STT--EEEEE-E-ETTSEEEEEEEEEEEEETTTE-EEEEEEEETSS-
T ss_pred CcCHHHHHHHHCCHhH-HhhccCCCcceeee--ecC--CEEEE-E-ecCCCCceeeEEEEEEeCCEE-EEEEEEccCCC-
Confidence 6899999999999998 88893211222221 223 34444 2 244433334445788888775 66774333322
Q ss_pred cceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHH-HHHHHHHHHHHHHHHH
Q 031475 93 AVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKD-AEERGTGLYKVLEAYL 151 (159)
Q Consensus 93 ~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l 151 (159)
+-.....++.|.+ .+++|.++.+.+=. +....... ....-..++..|.+||
T Consensus 72 -~~~~~~v~~~~~~-~~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 -DGPESRVTFEFEE-EGGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp -SCEEEEEEEEEEE-ETTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEEEEEE-cCCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1234578888999 56788888777322 11222222 4566788888888887
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.22 E-value=3.7e-05 Score=55.42 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=76.7
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
.+.++.|+||+++||+++.|+.. +.+|.+. -.+.++. +|..-.+.+...++ ...=++.++++.+ ++.|+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~~-~l~~~w 71 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPNK-RIVIEW 71 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCCC-EEEEEe
Confidence 46789999999999999999998 7775443 2233332 23332345543221 1223566676665 667775
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhH---HHHHHHHHHHHHHHHHHhhC
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK---DAEERGTGLYKVLEAYLVAN 154 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~le~~l~~~ 154 (159)
..++ +. -..++++.+.++|+|.++.+...-+.. .++..+ .....-..++..|++||...
T Consensus 72 ~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 72 GDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred cCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 3321 12 357888888865789888775533221 111111 12244577888999988654
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.10 E-value=0.00022 Score=50.79 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=70.8
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
++.+..++||+++||+++.|+.. +.+|... ..+.+... | |..+ +..|. +.=++.++++.+ +++|+-
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~-l~~W~~~-~~~~d~~~--G--G~~~---~~~g~----~~g~~~~i~p~~-~l~~~w 67 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEER-VQAFTRS-PAKVDAKV--G--GKFS---LFGGN----ITGEFVELVPGK-KIVQKW 67 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHH-HHhhcCC-CceecCCC--C--CEEE---EeCCc----eEEEEEEEcCCC-EEEEEE
Confidence 56789999999999999999998 7787753 22333222 2 3333 33331 333567677665 445553
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHH-HHHHHHHHHH
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGT-GLYKVLEAYL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~le~~l 151 (159)
.-.+.. . -..-..++.+++. +|+|.++.+....+.. . .....+.-. .+++.|.++|
T Consensus 68 ~~~~~~-~-~~~s~v~~~l~~~-~~gT~ltl~~~g~~~~------~-~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 68 RFKSWP-E-GHYSTVTLTFTEK-DDETELKLTQTGVPAG------E-EERTREGWERYYFESIKQTF 124 (126)
T ss_pred EcCCCC-C-CCcEEEEEEEEEC-CCCEEEEEEEECCCCc------h-HHHHHhhHHHHHHHHHHHHh
Confidence 211111 0 1224578888887 5678887776644321 1 112334433 4777777765
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.98 E-value=0.0001 Score=53.17 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=67.0
Q ss_pred eccCHHHHHHHhhcCCCCcccc-cCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCc-eEEEEEEecC
Q 031475 12 AAVAASRMFKAFVDSPNLLPKA-TPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNF-TCKYTMYDGD 89 (159)
Q Consensus 12 i~a~a~~vw~~~~d~~~~~p~~-~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~-~~~y~~~eg~ 89 (159)
++||+++||+++.|+.. +.+| .+. ...++... | |..+.+ .+. +.=++.++|+.+| .++|+.-+.+
T Consensus 1 f~ap~e~Vw~A~Tdp~~-l~~w~~~~-~~~~d~~~--G--G~f~~~---~~~----~~G~~~ev~pp~rlv~tw~~~~~~ 67 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYT-LTRLSLGS-PAEMDAKV--G--GKFSLF---NGS----VEGEFTELEKPKKIVQKWRFRDWE 67 (132)
T ss_pred CCCCHHHHHHHHcCHHH-HHHHhcCC-CccccCCc--C--CEEEEe---cCc----eEEEEEEEcCCCEEEEEEecCCCC
Confidence 47999999999999997 7777 432 11222111 3 233322 221 2336677777775 3355542211
Q ss_pred CCccceeeEEEEEEEeecCCCccEEEEEEE-EEEcCCCCCChhhhHHHHHHHHH-HHHHHHHHH
Q 031475 90 GILAVAEKGVYDVKIEASGNGGCVYKFAAE-VYVKDGEELKEEHVKDAEERGTG-LYKVLEAYL 151 (159)
Q Consensus 90 ~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~k~le~~l 151 (159)
. ... -..++.+.+.++|+|.++.+.. +........ ........+.-.+ ++..|++||
T Consensus 68 ~--~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~-~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 68 E--DVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGN-GGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred C--CCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCC-CchhhHHHhChHHHHHHHHHHHh
Confidence 1 112 3588888987667899988877 432211110 0001123345555 688888876
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.67 E-value=0.008 Score=46.79 Aligned_cols=144 Identities=12% Similarity=-0.023 Sum_probs=86.5
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEeeC--C--CceeEEEEEEEEEeCCCc
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFPD--G--GHYKQVKQRIDALDNDNF 79 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~~--g--~~~~~~kErl~~~D~~~~ 79 (159)
.+..+.++++|++++|+++.|... -++|.+ .++++++++.-+ ...-++..+=.+ . .+-..+.-+....+....
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCcch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 455788999999999999999998 999999 599999987432 223233322111 2 222233333222333333
Q ss_pred eEEEEEEecCCCc------cceeeEEEEEEEeec---CCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 031475 80 TCKYTMYDGDGIL------AVAEKGVYDVKIEAS---GNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAY 150 (159)
Q Consensus 80 ~~~y~~~eg~~~~------~~~~~y~~ti~v~~~---~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~ 150 (159)
.+.-+-+.-+..+ -....+.+-+.++|. ++|.|.++..+..++.+++.|..-.+. +....-.+...|..|
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~-~~~~~p~~~~~~~~~ 202 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSS-LSKRQPLVIARLALF 202 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhH-HHHhccHHHHHHHHH
Confidence 3333323331111 124567888999998 778899999999999877765444333 333333444444444
Q ss_pred H
Q 031475 151 L 151 (159)
Q Consensus 151 l 151 (159)
|
T Consensus 203 ~ 203 (205)
T cd08874 203 L 203 (205)
T ss_pred h
Confidence 4
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.57 E-value=0.016 Score=46.10 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=88.6
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEeeC---CCceeEEEEEEEE--EeCC
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFPD---GGHYKQVKQRIDA--LDND 77 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~~---g~~~~~~kErl~~--~D~~ 77 (159)
..+..+..+++|++++|+++.|... -++|.+. ..++++++.-+ ..+-++ +.+.. -.+-..+--+-.. .+..
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLSDPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHhCcch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 4578888899999999999999998 9999995 88999887332 223233 33321 1222233322222 2222
Q ss_pred C-ceEEEEEEe-cC-CCc---cceeeEEEEEEEeecCCCccEEEEEEEEEEcC-CCCCChhhhHHHHHHHHHHHHHHHHH
Q 031475 78 N-FTCKYTMYD-GD-GIL---AVAEKGVYDVKIEASGNGGCVYKFAAEVYVKD-GEELKEEHVKDAEERGTGLYKVLEAY 150 (159)
Q Consensus 78 ~-~~~~y~~~e-g~-~~~---~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~le~~ 150 (159)
+ ..+..+-+. .. +.. -....+.+-+.+.|.++|+|.++.....+|+- ... .-+ +...-..+...|+..++|
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYV-TCN-LAGLSALYCRTFHCCEQF 231 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCcccee-eec-chhhhHHHHHHHHHHHHH
Confidence 2 233333333 11 000 02567889999999988999999999888763 221 111 112334566777778888
Q ss_pred HhhC
Q 031475 151 LVAN 154 (159)
Q Consensus 151 l~~~ 154 (159)
|..|
T Consensus 232 ~~~~ 235 (235)
T cd08873 232 LVTN 235 (235)
T ss_pred hccC
Confidence 7654
No 46
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.12 E-value=0.043 Score=42.59 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=85.8
Q ss_pred EEEEEEEeccCHHHHH-HHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEee-CCC---ceeEEEEEEEEEeCCC
Q 031475 5 RFEREYPAAVAASRMF-KAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFP-DGG---HYKQVKQRIDALDNDN 78 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw-~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~-~g~---~~~~~kErl~~~D~~~ 78 (159)
.+..+..+++|+++++ .++-|.+. .++|.+. +.++++++--+ .---++.+... +++ +...+.-|....++.+
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 3667889999999999 66658888 8999995 77877765432 11112332222 111 1123333333333344
Q ss_pred ceEEEEEEecCCCc--c---ceeeEEEEEEEeecCC--CccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 79 FTCKYTMYDGDGIL--A---VAEKGVYDVKIEASGN--GGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 79 ~~~~y~~~eg~~~~--~---~~~~y~~ti~v~~~~~--g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
..+.....+-+..+ . ....+.+-+.++|.++ ++|.++|.+..++++. .|..-..+.+.+.....++.|.+++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr~~~ 206 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLRQRM 206 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHHHHH
Confidence 33211212222111 0 1455667888999865 7899999999998865 3322223445666778888888877
Q ss_pred h
Q 031475 152 V 152 (159)
Q Consensus 152 ~ 152 (159)
.
T Consensus 207 ~ 207 (209)
T cd08905 207 A 207 (209)
T ss_pred h
Confidence 5
No 47
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.08 E-value=0.08 Score=41.00 Aligned_cols=147 Identities=14% Similarity=0.022 Sum_probs=85.9
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee---CCCceeEE-E-EEEEEEeCC
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP---DGGHYKQV-K-QRIDALDND 77 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~---~g~~~~~~-k-Erl~~~D~~ 77 (159)
+..+..+-.+++|++++.+++.|.+. .++|.|. ..+.+.++..+.--.|-.+.+. +-.....+ . -.++.++ +
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~ 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-E 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-c
Confidence 35677888999999999999999986 9999996 4455555433211122222221 11111111 1 1122232 3
Q ss_pred CceEEEE--EEecC----------CCccc-----eeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHH
Q 031475 78 NFTCKYT--MYDGD----------GILAV-----AEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERG 140 (159)
Q Consensus 78 ~~~~~y~--~~eg~----------~~~~~-----~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 140 (159)
+..+... -+..+ .+..+ ...+.+-+.++|.++|+|.+++.+..+|.+.-.|.--....+++.+
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~ 201 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKFA 201 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHHH
Confidence 3333222 12210 11111 4677888999999889999999888877665343333334566677
Q ss_pred HHHHHHHHHHHh
Q 031475 141 TGLYKVLEAYLV 152 (159)
Q Consensus 141 ~~~~k~le~~l~ 152 (159)
..++++|.+.+.
T Consensus 202 ~~~~~~l~k~~~ 213 (215)
T cd08877 202 GLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHh
Confidence 788888877654
No 48
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.06 E-value=0.07 Score=39.21 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred CHHHHHHHhh-cCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEEEecCCCcc
Q 031475 15 AASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILA 93 (159)
Q Consensus 15 ~a~~vw~~~~-d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eg~~~~~ 93 (159)
..+++|+-+- ...+ -..+.|+ +.+|++++.++. ...|.++|++. .++|++. +++.. ++.|.+-.++.
T Consensus 18 Tr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~~~-~v~f~~~~~g~--- 85 (141)
T cd08863 18 TRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEPPS-RVHFLQADAGG--- 85 (141)
T ss_pred CHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecCCc-EEEEEecCCCC---
Confidence 3579998776 3333 3346675 899999987742 45699999874 7999988 44444 56787755111
Q ss_pred ceeeEEEEEEEeecCCCccEEEEEEEEEEcC-CCCCChhhhHHHHHHHHHHHHH
Q 031475 94 VAEKGVYDVKIEASGNGGCVYKFAAEVYVKD-GEELKEEHVKDAEERGTGLYKV 146 (159)
Q Consensus 94 ~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~ 146 (159)
+.++.+....+| .+-.++.|+... +..+ ++ .+.+.+...++++.
T Consensus 86 -----~l~~~iee~~~g--~L~lrf~ye~~~p~~~~-~e-~~~~~~~~~~a~~~ 130 (141)
T cd08863 86 -----TLTNTIEEPEDG--ALYLRFVYETTLPEVAE-EE-AKAYQEIVKQAYKE 130 (141)
T ss_pred -----eEEEEeccCCCC--cEEEEEEEEecCCCcCc-hH-HHHHHHHHHHHHHH
Confidence 233444333334 355567777543 3333 33 22344444555443
No 49
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.02 E-value=0.11 Score=40.49 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=80.9
Q ss_pred EEEEEEEeccCHHHHH-HHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEeeC-CCc---eeEEEEEEEEEeCCC
Q 031475 5 RFEREYPAAVAASRMF-KAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFPD-GGH---YKQVKQRIDALDNDN 78 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw-~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~~-g~~---~~~~kErl~~~D~~~ 78 (159)
.+..+..+++|++++| .++.|... .++|.+. +.++++++.-+ .---++.++... +++ ...+.-|-..-+.++
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence 4677889999999998 67899999 9999996 88888876432 111122333221 111 123333333333333
Q ss_pred c-eEEEEEEecCCCccceeeE-------EEEEEEee-cCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHH
Q 031475 79 F-TCKYTMYDGDGILAVAEKG-------VYDVKIEA-SGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEA 149 (159)
Q Consensus 79 ~-~~~y~~~eg~~~~~~~~~y-------~~ti~v~~-~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~ 149 (159)
. .+..++ .-+..+ +-+.| .+-+...+ .++++|.++|.+..++++. .|.--.++.+.+.....++.|.+
T Consensus 128 ~i~~~~sv-~~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~LR~ 204 (209)
T cd08906 128 YVSAGIST-THSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASHLRQ 204 (209)
T ss_pred EEEEEEEE-ecCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222 222211 12222 23333333 4567899999999998873 33222334556666778888877
Q ss_pred HHh
Q 031475 150 YLV 152 (159)
Q Consensus 150 ~l~ 152 (159)
++.
T Consensus 205 ~~~ 207 (209)
T cd08906 205 RIR 207 (209)
T ss_pred HHh
Confidence 764
No 50
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.98 E-value=0.087 Score=39.01 Aligned_cols=144 Identities=17% Similarity=0.052 Sum_probs=81.6
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCC---ceeEEEEEEEEEeCCCc-
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGG---HYKQVKQRIDALDNDNF- 79 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~---~~~~~kErl~~~D~~~~- 79 (159)
..+..+.++++|++++|+++.|... .++|-|. +.++++++.....-.+....+..-. +...+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLMDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHhCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 3566788899999999999999887 8999985 8888888754322344444443221 11112112122233232
Q ss_pred eEEEEEEecCCCcc--c---eeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 031475 80 TCKYTMYDGDGILA--V---AEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAY 150 (159)
Q Consensus 80 ~~~y~~~eg~~~~~--~---~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~ 150 (159)
.+...-++.+..+. + ...+.+-+.++|.++++|.+++.+..++.+. .|+.-....+.+....+.+.+..+
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~-iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS-IPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC-ccHHHHHhhhhhccHHHHHHHHHh
Confidence 22222232221111 1 2233455778888778999999999988763 332222233444455555555443
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.97 E-value=0.12 Score=41.30 Aligned_cols=115 Identities=14% Similarity=-0.001 Sum_probs=69.6
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEeeCC----CceeEEEEEEEEEeCCCc
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFPDG----GHYKQVKQRIDALDNDNF 79 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~~g----~~~~~~kErl~~~D~~~~ 79 (159)
.+..+..+++|++++++++.|... .++|.+. +.++++++.-+ .- .+..++..+- .+-..+.-+-..-+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 456778999999999999999999 9999986 88999886432 22 2555443321 111222222111222332
Q ss_pred ---eEEEEEEecCCCc--c---ceeeEEEEEEEeecCCCccEEEEEEEEEE
Q 031475 80 ---TCKYTMYDGDGIL--A---VAEKGVYDVKIEASGNGGCVYKFAAEVYV 122 (159)
Q Consensus 80 ---~~~y~~~eg~~~~--~---~~~~y~~ti~v~~~~~g~s~v~W~~~~~~ 122 (159)
.+..+...-+-.+ . ...++.+-+.+.|.++|+|.+.+...-+|
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 1233333222111 0 14556788999999888999988665554
No 52
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.87 E-value=0.052 Score=40.21 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=61.9
Q ss_pred EEEEEEeccCH--------HHHHHHhh-cCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeC
Q 031475 6 FEREYPAAVAA--------SRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDN 76 (159)
Q Consensus 6 ~~~e~~i~a~a--------~~vw~~~~-d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~ 76 (159)
++..++||-|. +++|+-+. ...+ -..+.| .+.+|++++.. +.+-.|.++|+. ..++|++. +.+
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~----~~v~E~v~-~~~ 73 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGG----ATVRERVT-LYP 73 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETT----EEEEEEEE-EET
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECC----cEEEEEEE-EeC
Confidence 45556665554 57998776 2222 234677 48999998765 346789999932 38999988 444
Q ss_pred CCceEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEc-CCCCC-Chh-------hhHHHHHHHHHHHHHH
Q 031475 77 DNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVK-DGEEL-KEE-------HVKDAEERGTGLYKVL 147 (159)
Q Consensus 77 ~~~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~-~~~~~-~~~-------~~~~~~~~~~~~~k~l 147 (159)
.. ++.|....| + +-++.+....+| .+-.++.|+.. ++..+ .++ ..+.++.+.....+.|
T Consensus 74 ~~-~V~f~~~~G-------s--~lt~~I~e~~~g--~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~i 141 (149)
T PF08982_consen 74 PE-RVDFAQHDG-------S--SLTNIISEPEPG--DLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVI 141 (149)
T ss_dssp TT-EEEESSSBE-------E--EEEEEEEEEETT--EEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEEEcCCC-------C--EEEEEEecCCCC--cEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 556621111 2 334444333233 55566666643 21111 111 1134455555666666
Q ss_pred HHHHh
Q 031475 148 EAYLV 152 (159)
Q Consensus 148 e~~l~ 152 (159)
-+...
T Consensus 142 Re~~~ 146 (149)
T PF08982_consen 142 RELAK 146 (149)
T ss_dssp HHHH-
T ss_pred HHHhh
Confidence 55543
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.84 E-value=0.15 Score=39.51 Aligned_cols=143 Identities=9% Similarity=-0.059 Sum_probs=79.0
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCc--ccccCCceeeEEEEcCC-CccceEEEEEee-C-C---CceeEEE-EEEEEEeC
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLL--PKATPQAFKSIEVLEGD-GGVGTVTLWTFP-D-G---GHYKQVK-QRIDALDN 76 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~--p~~~P~~v~s~~~~eG~-g~~Gsir~~~~~-~-g---~~~~~~k-Erl~~~D~ 76 (159)
+..+..++++++++++.+.|..+ - ++|-+. +.++++++.- ....-++. ..+ + + .+...+- ......++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~-~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAG-GLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccc-hhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 66888999999999999987654 3 789985 7788887643 22222332 222 1 1 1112222 22222333
Q ss_pred CCceEEEEEEecCCCc--ccee---e--EEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHH
Q 031475 77 DNFTCKYTMYDGDGIL--AVAE---K--GVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEA 149 (159)
Q Consensus 77 ~~~~~~y~~~eg~~~~--~~~~---~--y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~ 149 (159)
....+.+...+-+..+ .+|- . +.+-++..|.++++|.++|.+..++++ ..|..-..+.+.+.....++.|.+
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~Lr~ 203 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLPQTVVDSFFPASMAEFYNNLTK 203 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcCHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333332211 1111 1 234455555556789999999888874 333222223444566777888877
Q ss_pred HHh
Q 031475 150 YLV 152 (159)
Q Consensus 150 ~l~ 152 (159)
++.
T Consensus 204 ~~~ 206 (208)
T cd08903 204 AVK 206 (208)
T ss_pred HHh
Confidence 764
No 54
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.12 Score=37.66 Aligned_cols=114 Identities=14% Similarity=0.042 Sum_probs=75.6
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeC---CCc-eeEEEEEEEE--EeC
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPD---GGH-YKQVKQRIDA--LDN 76 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~---g~~-~~~~kErl~~--~D~ 76 (159)
++++....+|++|.|.||+..+.+++ +..+-|..+ |-.-+|+ .++..-.+.+.- |.+ -..++-|+++ +|+
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrpd~-lq~LTppw~--VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~ 76 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRPDA-LQRLTPPWI--VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN 76 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCccH-HHhcCCCcE--EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC
Confidence 35788889999999999999998888 777888633 2222343 233333333321 221 1467778777 666
Q ss_pred CCceEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCC
Q 031475 77 DNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDG 125 (159)
Q Consensus 77 ~~~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~ 125 (159)
-. +++=.++.|+.. .-+..-+-+|.+. +|+|++.=++.|+...+
T Consensus 77 ~~-~FtDv~i~gPfp---~~~WrHtH~F~~e-gg~TvliD~Vsye~p~g 120 (153)
T COG4276 77 GS-RFTDVCITGPFP---ALNWRHTHNFVDE-GGGTVLIDSVSYELPAG 120 (153)
T ss_pred cc-eeeeeeecCCcc---ceeeEEEeeeecC-CCcEEEEeeEEeeccCc
Confidence 55 555666777643 2257788888887 46799999999996544
No 55
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.52 E-value=0.26 Score=38.07 Aligned_cols=146 Identities=15% Similarity=0.044 Sum_probs=84.6
Q ss_pred EEEEEEEEe-ccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCC--ccceEEEE-Eee-CCCceeEEEEEEEEEe-CC
Q 031475 4 TRFEREYPA-AVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDG--GVGTVTLW-TFP-DGGHYKQVKQRIDALD-ND 77 (159)
Q Consensus 4 ~~~~~e~~i-~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g--~~Gsir~~-~~~-~g~~~~~~kErl~~~D-~~ 77 (159)
..+..+.++ ++|++++++++.|... -++|.+. +.+.++++-++ +.--++.. .++ +-.+-..+--|....| +.
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 456677778 6799999999999987 8999996 66677766543 12222221 111 1112223333333334 22
Q ss_pred CceEEEEEEecCCCc----cceeeEEEEEEEeec--CCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHH
Q 031475 78 NFTCKYTMYDGDGIL----AVAEKGVYDVKIEAS--GNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAY 150 (159)
Q Consensus 78 ~~~~~y~~~eg~~~~----~~~~~y~~ti~v~~~--~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~ 150 (159)
...+..+.+.-+..+ ..+..|.+.+.+.|. ++++|.+.++.--.+.+ ..| .-.. ..+....-.++++|...
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~IP-~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-GIP-RELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-CCC-HHHHHHHHHhhhHHHHHHHHHH
Confidence 222222222221111 127789999999998 56778888777776633 333 3333 44555567888888877
Q ss_pred Hhh
Q 031475 151 LVA 153 (159)
Q Consensus 151 l~~ 153 (159)
+.+
T Consensus 206 ~~~ 208 (209)
T cd08870 206 LRK 208 (209)
T ss_pred Hhc
Confidence 643
No 56
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.50 E-value=0.26 Score=37.92 Aligned_cols=145 Identities=11% Similarity=0.059 Sum_probs=81.4
Q ss_pred EEEEEEeccCHHHHHH-HhhcCCCCcccccCCceeeEEEEcCC-CccceEEEEEeeCC-C---ceeEEEEEEEEEeCCCc
Q 031475 6 FEREYPAAVAASRMFK-AFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWTFPDG-G---HYKQVKQRIDALDNDNF 79 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~-~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~~~~~g-~---~~~~~kErl~~~D~~~~ 79 (159)
+..+..+++|+++++. ++.|.+. .++|.+. +.++++++.- +.---+......+. . +...+--|....++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 6678889999999986 5558888 8999996 6677776543 21111222221121 1 11222222222333333
Q ss_pred eEEEEEEecCCCc--cc---eeeEEEEEEEeecCC--CccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 80 TCKYTMYDGDGIL--AV---AEKGVYDVKIEASGN--GGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 80 ~~~y~~~eg~~~~--~~---~~~y~~ti~v~~~~~--g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
.+...-++-+..+ .+ ...+.+.+.++|.++ ++|.+.|.+..++++.. |.--....+......+++.|..++.
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeeehhhHHHHHHHHHHHHHHHh
Confidence 3333323311111 11 344567788888765 57999999998887532 2111223345666778888888775
Q ss_pred h
Q 031475 153 A 153 (159)
Q Consensus 153 ~ 153 (159)
+
T Consensus 207 ~ 207 (208)
T cd08868 207 T 207 (208)
T ss_pred h
Confidence 3
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.47 E-value=0.29 Score=38.06 Aligned_cols=147 Identities=11% Similarity=-0.000 Sum_probs=80.4
Q ss_pred EEEEEEEe-ccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee-CC--CceeEEEEEEEEEeCCCce
Q 031475 5 RFEREYPA-AVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP-DG--GHYKQVKQRIDALDNDNFT 80 (159)
Q Consensus 5 ~~~~e~~i-~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~-~g--~~~~~~kErl~~~D~~~~~ 80 (159)
.+..+.++ ++|++++++++.|... -++|-+. +..++.++.-+.--.|..+.+. +- .+...+--|...-++....
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVLHDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHHHChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 35566666 6999999999999887 8899996 6566666543211233333332 11 1112232232322232212
Q ss_pred EEEEEEecCCCc--cc---eeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHHhhC
Q 031475 81 CKYTMYDGDGIL--AV---AEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYLVAN 154 (159)
Q Consensus 81 ~~y~~~eg~~~~--~~---~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~~~ 154 (159)
+...-++-+..+ .+ ...+.+-+.++|.++++|.+.|.+..++.+. .| .-.. ..+....-.+++.|.+.+.+-
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP-~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LP-KWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cC-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211112211111 11 2345667788898778899999988887764 22 3333 333444567777777766554
Q ss_pred C
Q 031475 155 P 155 (159)
Q Consensus 155 ~ 155 (159)
+
T Consensus 204 ~ 204 (222)
T cd08871 204 P 204 (222)
T ss_pred H
Confidence 4
No 58
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.91 E-value=0.57 Score=36.19 Aligned_cols=146 Identities=12% Similarity=0.008 Sum_probs=83.9
Q ss_pred EEEEEEEEe-ccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccc-eEEEEEee-C--CCceeEEEEEEEEEeCCC
Q 031475 4 TRFEREYPA-AVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVG-TVTLWTFP-D--GGHYKQVKQRIDALDNDN 78 (159)
Q Consensus 4 ~~~~~e~~i-~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~G-sir~~~~~-~--g~~~~~~kErl~~~D~~~ 78 (159)
..+..+.++ ++|++.+.+++.|... -++|.+. +.++++++.+...+ -|-.+.+. + =.+-..+-.|....|+++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 456666666 9999999999999997 8999985 77788887542111 12222221 1 111134444555567665
Q ss_pred ceEE--EEEEecCCCc-----cceeeEEEEEEEeecC---CCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHH
Q 031475 79 FTCK--YTMYDGDGIL-----AVAEKGVYDVKIEASG---NGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVL 147 (159)
Q Consensus 79 ~~~~--y~~~eg~~~~-----~~~~~y~~ti~v~~~~---~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~l 147 (159)
..+. ..-++-+..+ -.+.+|.+.+.+.|.. +++|.+.+..--+|+ +.. |.-.. ..+....-++++.|
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg-G~I-P~~lvN~~~~~~~~~~l~~l 200 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG-VNI-PSYITSWVAMSGMPDFLERL 200 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC-Ccc-CHHHHHHHHHhhccHHHHHH
Confidence 4421 1112210100 1277889999999874 457877754443332 233 33333 34455567888888
Q ss_pred HHHHhh
Q 031475 148 EAYLVA 153 (159)
Q Consensus 148 e~~l~~ 153 (159)
...+++
T Consensus 201 ~~a~~~ 206 (207)
T cd08911 201 RNAALK 206 (207)
T ss_pred HHHHhc
Confidence 777653
No 59
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=95.66 E-value=0.74 Score=35.61 Aligned_cols=144 Identities=12% Similarity=-0.038 Sum_probs=80.7
Q ss_pred EEEEEEEEec-cCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee---CCCceeEE-EEEEEEEeCCC
Q 031475 4 TRFEREYPAA-VAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP---DGGHYKQV-KQRIDALDNDN 78 (159)
Q Consensus 4 ~~~~~e~~i~-a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~---~g~~~~~~-kErl~~~D~~~ 78 (159)
..+..+.+++ ++++.+.+++.|... -++|.+... ++.-.+.++. .|-.+.+. +=.+...+ .-+...+|.++
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 4566777888 799999999999998 899999644 4322222231 22233321 11111122 21223355454
Q ss_pred ceEEE---EEEecCCCc-----cceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 031475 79 FTCKY---TMYDGDGIL-----AVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAY 150 (159)
Q Consensus 79 ~~~~y---~~~eg~~~~-----~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~ 150 (159)
..+.. +..+-+..+ -....|.+.+.++|.++++|.+.+....+|++ ..|.--.+..+....-.+++.|...
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHHHHHH
Confidence 42211 111111110 02678999999999877788888777666643 3332222244556667888888776
Q ss_pred Hh
Q 031475 151 LV 152 (159)
Q Consensus 151 l~ 152 (159)
+.
T Consensus 204 ~~ 205 (207)
T cd08910 204 CQ 205 (207)
T ss_pred Hh
Confidence 54
No 60
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.60 E-value=0.58 Score=37.26 Aligned_cols=115 Identities=16% Similarity=0.026 Sum_probs=68.9
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCC-ccceEEEEEeeC---CCceeEEEEEEEEEeC-CC
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDG-GVGTVTLWTFPD---GGHYKQVKQRIDALDN-DN 78 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~Gsir~~~~~~---g~~~~~~kErl~~~D~-~~ 78 (159)
..+..+..+++|++++++++.|... .++|.+. +.++++++.-+ .-- |..+.-.+ -.+-..+..+-..... ++
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 4677888999999999999999999 9999996 77888876432 112 55554332 1111222221111122 33
Q ss_pred ceE--EEEEEecCCCc--c---ceee-EEEEEEEeecCCCccEEEEEEEEEE
Q 031475 79 FTC--KYTMYDGDGIL--A---VAEK-GVYDVKIEASGNGGCVYKFAAEVYV 122 (159)
Q Consensus 79 ~~~--~y~~~eg~~~~--~---~~~~-y~~ti~v~~~~~g~s~v~W~~~~~~ 122 (159)
..+ .-+-+..+..| . .... ..|- .+.|.++++|.++....-+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 222 22222221110 0 1344 4444 78898888999999998888
No 61
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.57 E-value=0.65 Score=34.35 Aligned_cols=108 Identities=25% Similarity=0.303 Sum_probs=61.9
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCccc---ccCC---ceeeEEEEcCCCccceEEEE-EeeC-CCc---------eeEEE
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPK---ATPQ---AFKSIEVLEGDGGVGTVTLW-TFPD-GGH---------YKQVK 68 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~---~~P~---~v~s~~~~eG~g~~Gsir~~-~~~~-g~~---------~~~~k 68 (159)
|+.++++++|+++||+++.|..- +.. -+.. .+.+++ .+|+| -+++.- .+.. ..| ...++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 46788999999999999997753 222 1211 233443 23443 112111 1221 111 11222
Q ss_pred EEEEEE---eCCCceEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEc
Q 031475 69 QRIDAL---DNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVK 123 (159)
Q Consensus 69 Erl~~~---D~~~~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~ 123 (159)
+ .+.+ ++..++.+|++--.+ .|. +.++++.+.|. +++|++.++.+.+..
T Consensus 77 ~-~e~w~~~~~g~~~g~~~~~~~G---~P~-~~~G~~~L~~~-~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 R-TETWTPLDDGRRTGTFTVSIPG---APV-SISGTMRLRPD-GGGTRLTVEGEVKVK 128 (159)
T ss_pred E-EEEEecCCCCeEEEEEEEEecC---ceE-EEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence 2 2334 567777777753222 123 38999999995 457999999999954
No 62
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.51 E-value=1.5 Score=33.08 Aligned_cols=147 Identities=12% Similarity=-0.069 Sum_probs=83.8
Q ss_pred EEEEEEEEeccCHHHHH-HHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee-C---CCceeEEEEEEEEEe-CC
Q 031475 4 TRFEREYPAAVAASRMF-KAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP-D---GGHYKQVKQRIDALD-ND 77 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw-~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~-~---g~~~~~~kErl~~~D-~~ 77 (159)
..+..+..+++++++++ .++.|... .++|.+. +.++++++-...-..|..+... + -.+...+--|-...+ +.
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 45677888999999855 67779887 8999995 7777776532111244444332 1 111122222222222 33
Q ss_pred CceEEEEEEecCCCc--c---ceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHh
Q 031475 78 NFTCKYTMYDGDGIL--A---VAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLV 152 (159)
Q Consensus 78 ~~~~~y~~~eg~~~~--~---~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
...+..+-++.+..+ . ....+.+-+.++|.++|.|.++|....++.+. .|.--....+......+++.+.++|.
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHHH
Confidence 334433333332211 0 13567788999999888899999999888764 22222223344455666666666654
Q ss_pred h
Q 031475 153 A 153 (159)
Q Consensus 153 ~ 153 (159)
.
T Consensus 202 ~ 202 (206)
T smart00234 202 K 202 (206)
T ss_pred H
Confidence 3
No 63
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.43 E-value=1.7 Score=33.28 Aligned_cols=143 Identities=10% Similarity=-0.021 Sum_probs=78.3
Q ss_pred EEEEEEEeccCHHHHHHHhhc--CCCCcccccCCceeeEEEEcCCCccceEEEEEee-CC-C---ceeEE-EEEEEEEeC
Q 031475 5 RFEREYPAAVAASRMFKAFVD--SPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP-DG-G---HYKQV-KQRIDALDN 76 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d--~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~-~g-~---~~~~~-kErl~~~D~ 76 (159)
.+..+.+++++++++++.+.| ... .++|-+. +.++++++.-+..=.|-...++ +. + +...+ .+....+++
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVIIPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 367788899999999999997 666 7899985 7788887754211112222221 11 1 11111 122222333
Q ss_pred CCceEEEEEEecCCCc--cc---eeeEEEEEEEeecC--CCccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHH
Q 031475 77 DNFTCKYTMYDGDGIL--AV---AEKGVYDVKIEASG--NGGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLE 148 (159)
Q Consensus 77 ~~~~~~y~~~eg~~~~--~~---~~~y~~ti~v~~~~--~g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le 148 (159)
....+...-++-+..+ .+ ...+.+-+-+.|.+ +++|.++|.+..++.+.. | .-.. ..+.+.....++.|.
T Consensus 125 ~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i-P-~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 125 NQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI-P-QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred CeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC-c-HHHHHhhhhhhHHHHHHHHH
Confidence 2222333333222211 01 22233445566654 357999999999988533 2 2222 344555667777777
Q ss_pred HHH
Q 031475 149 AYL 151 (159)
Q Consensus 149 ~~l 151 (159)
.|+
T Consensus 203 ~~~ 205 (206)
T cd08867 203 KGV 205 (206)
T ss_pred Hhc
Confidence 765
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.20 E-value=3.5 Score=32.65 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=79.5
Q ss_pred EEEEEEEec-cCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee---CCCceeEE-EEEEEEEeCCC-
Q 031475 5 RFEREYPAA-VAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP---DGGHYKQV-KQRIDALDNDN- 78 (159)
Q Consensus 5 ~~~~e~~i~-a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~---~g~~~~~~-kErl~~~D~~~- 78 (159)
.+..+.+++ ++++++.+++.|... -++|... +++.++++-...--.|-...+. +-.+...+ .-.+...++..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~-r~~Wd~~-~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~ 130 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDV-RMDWETT-LENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEE 130 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhh-HHHHHhh-hheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccc
Confidence 467777888 999999999999998 8899985 7788876543110111111111 11111121 12222233321
Q ss_pred ----c---eEEEEEEecCCCccceeeEEEEE-----------------EEeecCCCccEEEEEEEEEEcCCCCCChhhhH
Q 031475 79 ----F---TCKYTMYDGDGILAVAEKGVYDV-----------------KIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 134 (159)
Q Consensus 79 ----~---~~~y~~~eg~~~~~~~~~y~~ti-----------------~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~ 134 (159)
. .+..++ +-+..+..=...++.. .++| ++++|.+.+.+..+|++. .|.--.+.
T Consensus 131 ~~~~~~~vii~~Sv-~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~-iP~wvvn~ 207 (235)
T cd08872 131 PNAHDTWIVCNFSV-DHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW-APASVLRA 207 (235)
T ss_pred ccCCCeEEEEEecc-cCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC-ccHHHHHH
Confidence 1 122222 2221111111222322 2334 356899988888887753 33333335
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 031475 135 DAEERGTGLYKVLEAYLVAN 154 (159)
Q Consensus 135 ~~~~~~~~~~k~le~~l~~~ 154 (159)
.++..+-++++.+.+|+..+
T Consensus 208 ~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 208 VYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHhhchHHHHHHHHHHHHh
Confidence 66677889999999999865
No 65
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=89.85 E-value=5.6 Score=29.04 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=32.0
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD 47 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~ 47 (159)
.++.++..+.+.+.+-.+++||.-++|+++|. ++++. ++++
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTT-EEEEE--STT
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCCc-eEEEE-ecCC
Confidence 57889999999999999999999889999994 89988 4454
No 66
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=88.82 E-value=2.8 Score=32.84 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=67.5
Q ss_pred EEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-CccceEEEEE--eeCCCceeEEEEEEEEEeCCCceEEEEEE
Q 031475 10 YPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWT--FPDGGHYKQVKQRIDALDNDNFTCKYTMY 86 (159)
Q Consensus 10 ~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~~--~~~g~~~~~~kErl~~~D~~~~~~~y~~~ 86 (159)
..+..+++++|++++|... ..++.| ..+..+++..+ ++ +.+-.++ |++=. +...-+++ +++..++.+ ..-
T Consensus 74 rligysp~~my~vVS~V~~-Y~~FVP-wC~kS~V~~~~P~~-~~kA~LeVGFk~l~--E~y~S~Vt-~~~p~l~kt-~~~ 146 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVSNVSE-YHEFVP-WCKKSDVTSRRPSG-PLKADLEVGFKPLD--ERYTSNVT-CVKPHLTKT-VCA 146 (227)
T ss_pred hhhCCCHHHHHHHHHhHHH-hhcccc-ceeccceeecCCCC-CceeeEEecCcccc--hhheeeeE-EecccceEE-eec
Confidence 4578899999999998877 777777 56666665443 22 2333333 32111 22333433 566665533 234
Q ss_pred ecCCCccceeeEEEEEEEeecC--CCccEEEEEEEEEEcC
Q 031475 87 DGDGILAVAEKGVYDVKIEASG--NGGCVYKFAAEVYVKD 124 (159)
Q Consensus 87 eg~~~~~~~~~y~~ti~v~~~~--~g~s~v~W~~~~~~~~ 124 (159)
+|. .|......|++.|.. .+.|++...++|+...
T Consensus 147 d~r----LF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 147 DGR----LFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ccc----HHHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 453 367778899999998 4799999999999764
No 67
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=88.48 E-value=9.4 Score=29.13 Aligned_cols=117 Identities=12% Similarity=-0.033 Sum_probs=68.5
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEee---CCCceeEEEEEEEEEeCCCc--
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFP---DGGHYKQVKQRIDALDNDNF-- 79 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~---~g~~~~~~kErl~~~D~~~~-- 79 (159)
.+..+.++++++++++..+-|. -++|-+. +.++++++--+.-=.|-...+. +-.+-..+--|....+.++.
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRILRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHHHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 4678899999999999988764 3689986 7777777643210112222221 11222334443333334333
Q ss_pred eEEEEEEec--CCCcc--ceeeEEEEEEEeecCCCccEEEEEEEEEEcCC
Q 031475 80 TCKYTMYDG--DGILA--VAEKGVYDVKIEASGNGGCVYKFAAEVYVKDG 125 (159)
Q Consensus 80 ~~~y~~~eg--~~~~~--~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~ 125 (159)
.+..+-++- ..++. ....+.+-+.++|.++|+|.+++.+..++.+.
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 323332321 11110 13556788889999888999999999998764
No 68
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=85.01 E-value=16 Score=28.36 Aligned_cols=119 Identities=11% Similarity=0.032 Sum_probs=68.3
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-CccceEEEE-Ee-eCCCceeEEEEEEEEEeCCCce
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLW-TF-PDGGHYKQVKQRIDALDNDNFT 80 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~-~~-~~g~~~~~~kErl~~~D~~~~~ 80 (159)
..+..+.+++++++++...+-|- -++|.+. +.+.++++.- ..---+... .. .+-.+-..+.-|.-..|..+..
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence 45788999999999999998755 4678886 5555655532 111111111 11 1222223444444433444444
Q ss_pred EEEEEE--ecCCCcc---ceeeEEEEEEEeecCCCccEEEEEEEEEEcCCC
Q 031475 81 CKYTMY--DGDGILA---VAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGE 126 (159)
Q Consensus 81 ~~y~~~--eg~~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~ 126 (159)
+..... +-+-.+. ....+.+.+.++|.++|+|.++..+..+|.+..
T Consensus 128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 322222 1111111 144567888899998899999999888887643
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=81.10 E-value=21 Score=26.72 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=87.2
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCC--c---eeEEEEEEEEEeCC
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGG--H---YKQVKQRIDALDND 77 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~--~---~~~~kErl~~~D~~ 77 (159)
...+.....+++++++++..+.+... .|-+. +.++++++--..-..|..+.+..-. + -..+--|....+.+
T Consensus 45 ~~~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 45 IKMFKAEGVVPASPEQVVEDLLDDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp CEEEEEEEEESSCHHHHHHHHHCGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred ceEEEEEEEEcCChHHHHHHHHhhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 34577888999999988888774443 78885 7788887642111456555544221 2 12222222222333
Q ss_pred C-ceEEEEEEecCCCcc------ceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhH-HHHHHHHHHHHHHHH
Q 031475 78 N-FTCKYTMYDGDGILA------VAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK-DAEERGTGLYKVLEA 149 (159)
Q Consensus 78 ~-~~~~y~~~eg~~~~~------~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 149 (159)
+ ..+..+=++.+..+. ....+.+.+.++|.++|.|.+.+...-++.+.. | .-..+ .+......+++.+-+
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i-P-~~~~n~~~~~~~~~~~~~~~~ 198 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI-P-SWLVNMVVKSQPPNFLKNLRK 198 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS-H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC-h-HHHHHHHHHHhHHHHHHHHHH
Confidence 3 344444344332211 134667888899998888999988887776532 2 33333 344456678888888
Q ss_pred HHhhCC
Q 031475 150 YLVANP 155 (159)
Q Consensus 150 ~l~~~~ 155 (159)
+|..++
T Consensus 199 ~~~~~~ 204 (206)
T PF01852_consen 199 ALKKQK 204 (206)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 887765
No 70
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.21 E-value=48 Score=27.39 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=56.0
Q ss_pred EEEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC-CccceEEEEEeeCCCceeEEEEEEEEEeCCCc-eE
Q 031475 4 TRFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD-GGVGTVTLWTFPDGGHYKQVKQRIDALDNDNF-TC 81 (159)
Q Consensus 4 ~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~-~~ 81 (159)
...+.+-+++++++++++.|.|... +..|.-+ - ...+.+ | |.. .+-+|. +.=++.++.+.++ .+
T Consensus 173 ~di~l~~tfn~~~~eLy~~fld~~r-v~~wt~S-~---a~l~~~~~--g~f---~lf~Gn----Vtg~~~~~e~~K~Iv~ 238 (301)
T KOG2936|consen 173 ADISLSATFNCRVDELYEIFLDPER-VKAWTRS-P---AELEADPG--GKF---SLFDGN----VTGEFLELEKNKKIVM 238 (301)
T ss_pred ccceehhhcCCCHHHHHHHHhcHHH-HHHhcCC-h---hhcccCCC--Cce---EEeccc----ceeeeeeecCCCeEEE
Confidence 4567778899999999999999997 6666631 1 223333 3 333 333332 2224444555554 55
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCC-CccEEEEEEE
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGN-GGCVYKFAAE 119 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~-g~s~v~W~~~ 119 (159)
.|++-.=+ ..+-+||+++.... |.|.+...+.
T Consensus 239 kWrl~~Wp------~~~~atI~~~f~~~~~~t~l~~~~k 271 (301)
T KOG2936|consen 239 KWRLKSWP------DGHDATITLTFYESQGETKLQVKQK 271 (301)
T ss_pred EEecccCC------CCccceEEEEEecCCCceEEEEEec
Confidence 78863222 12557777776543 5676665544
No 71
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=53.24 E-value=27 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=28.2
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.+.+.+.+........+..+++.+....+-+.||+.+.++|+.|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 35566654332221122223456678899999999999999976
No 72
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=46.18 E-value=87 Score=20.93 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=32.9
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANP 155 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 155 (159)
.|++++-+ +..-.+.|.++... |++.+--.+.+-......++.+.+. ......+.++-..||..+|
T Consensus 14 G~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 36666653 66667889998875 5566655555544332222233221 1234567777888888887
No 73
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=44.98 E-value=39 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=28.1
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.+.+.+++.......++.-.+..+....+.+.+|+++.++|+.|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 36677765432211111112345678899999999999999975
No 74
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=44.23 E-value=47 Score=25.48 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=40.6
Q ss_pred eccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEEEecCCC
Q 031475 12 AAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGI 91 (159)
Q Consensus 12 i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eg~~~ 91 (159)
++.+..|+|. |-++ -+.--|..| .+.+. .+|.. ....+++..+..-...-+-|-.+|..+..|.|++-|-++.
T Consensus 3 ~~i~v~K~W~---d~~n-~~~~RP~sI-~v~L~-~ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~ 75 (187)
T cd00222 3 VNLSGTKIWD---DYDD-KFKKRPAKI-SVQLL-ANGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVP 75 (187)
T ss_pred EEEEEEEEEC---CCCC-CCCCCCCEE-EEEEE-eCCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCC
Confidence 4455566776 3333 334456533 45554 23322 3445556544332223345666777888999999888765
No 75
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=38.10 E-value=1.9e+02 Score=22.34 Aligned_cols=139 Identities=4% Similarity=-0.112 Sum_probs=74.5
Q ss_pred EEEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCC--CccceEEEEEeeC--C---CceeEEEEEE-EEEeC
Q 031475 5 RFEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGD--GGVGTVTLWTFPD--G---GHYKQVKQRI-DALDN 76 (159)
Q Consensus 5 ~~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~--g~~Gsir~~~~~~--g---~~~~~~kErl-~~~D~ 76 (159)
-+..+-.++++++++|+.+.+... -.+|-+ .+.+++++|-= .. .|-+....+ + ++...+-=|- ..+++
T Consensus 47 l~k~egvi~~~~e~v~~~l~~~e~-r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~ 122 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMYQPEH-RIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHIKRYEG 122 (204)
T ss_pred EEEEEEEecCCHHHHHHHHhccch-hhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEEEEeCC
Confidence 356788899999999999998776 788998 47788877631 11 122211121 1 1112222221 12344
Q ss_pred CCceEEEEEEecCCCcc--c---eeeEEEEEEEeecCC--CccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHH
Q 031475 77 DNFTCKYTMYDGDGILA--V---AEKGVYDVKIEASGN--GGCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLE 148 (159)
Q Consensus 77 ~~~~~~y~~~eg~~~~~--~---~~~y~~ti~v~~~~~--g~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le 148 (159)
....+....++-+-.+. + -.++.+-+-+.|.++ ++|.+.|-+..++.+. .| ...+ +.+......++..+.
T Consensus 123 ~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP-~~vv~~~~~~~~~~f~~~~~ 200 (204)
T cd08904 123 NMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN-LS-RSVIEKTMPTNLVNLILDAK 200 (204)
T ss_pred CEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC-CC-HHHHHHHhHHHHHHHHHHHH
Confidence 44333444444332210 1 233345566778765 3799999999887743 22 2222 223333445555544
Q ss_pred H
Q 031475 149 A 149 (159)
Q Consensus 149 ~ 149 (159)
.
T Consensus 201 ~ 201 (204)
T cd08904 201 D 201 (204)
T ss_pred H
Confidence 4
No 76
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=37.18 E-value=74 Score=25.61 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 135 DAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 135 ~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
+..+....+.+.||+++.++|+.|
T Consensus 258 ~~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 258 DILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhh
Confidence 356778899999999999999965
No 77
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.11 E-value=65 Score=25.91 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=27.1
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.+.+.|++.....+.+ +..+....+.+.+|+++.++|+.|
T Consensus 238 ~y~i~~~~~~~~~~~~----~~~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDMYST----DVEVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCCCCC----CHHHHHHHHHHHHHHHHHcCcHHh
Confidence 4666676543222222 234678899999999999999865
No 78
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=35.05 E-value=73 Score=25.83 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=26.4
Q ss_pred EEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 116 FAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 116 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
|.+.+.+.....+ ++ +..+....+.+.+|+++.++|+.|
T Consensus 249 ~~i~~~~~~~~~~-~~---~~~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATEL-SV---DPEQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCC-CC---CHHHHHHHHHHHHHHHHHcCchHH
Confidence 6666654322221 22 245678899999999999999865
No 79
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=33.35 E-value=41 Score=22.71 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=21.0
Q ss_pred cceEEEEEeeCCCceeEEEEEEEEEeCCCceEEEEE
Q 031475 50 VGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTM 85 (159)
Q Consensus 50 ~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 85 (159)
+|-.+.+++.+|. |++.+|.+++.+ |.+
T Consensus 25 ~g~~kEf~lpsGk-------R~D~id~~~k~I-yEL 52 (89)
T PF15650_consen 25 GGREKEFRLPSGK-------RPDFIDFETKII-YEL 52 (89)
T ss_pred ccceeeeecCCCC-------cCccccCCcceE-EEe
Confidence 3567777887774 889999999764 665
No 80
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=33.21 E-value=1.9e+02 Score=26.80 Aligned_cols=74 Identities=16% Similarity=0.311 Sum_probs=41.2
Q ss_pred cEEEEEEEEeccCHHHHHHHhhcCCCCcccc--cCCceeeEEEEcCC-----CccceEEEEEeeCCCceeEEEEEEEEEe
Q 031475 3 VTRFEREYPAAVAASRMFKAFVDSPNLLPKA--TPQAFKSIEVLEGD-----GGVGTVTLWTFPDGGHYKQVKQRIDALD 75 (159)
Q Consensus 3 ~~~~~~e~~i~a~a~~vw~~~~d~~~~~p~~--~P~~v~s~~~~eG~-----g~~Gsir~~~~~~g~~~~~~kErl~~~D 75 (159)
+.++....-+.++|||.-+++++ ..++..+ |-..|.++.++.+. +.=|.||.|.+.++ .+.|. .-
T Consensus 146 v~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~g 217 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---HG 217 (745)
T ss_pred eeecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---ec
Confidence 44555556678888887777764 3223222 33445555555542 23489999998433 33332 22
Q ss_pred CCCceEEEE
Q 031475 76 NDNFTCKYT 84 (159)
Q Consensus 76 ~~~~~~~y~ 84 (159)
..+..|+++
T Consensus 218 htn~vYsis 226 (745)
T KOG0301|consen 218 HTNFVYSIS 226 (745)
T ss_pred cceEEEEEE
Confidence 455555555
No 81
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=33.15 E-value=81 Score=25.61 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=27.5
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.|.+.+++.....+. + +..+....+.+.||+++.++|+.|
T Consensus 248 ~y~i~i~~~~~~~~~-~---~i~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADFPS-D---DVIADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCcHhh
Confidence 466666643322222 2 245678899999999999999865
No 82
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.90 E-value=84 Score=25.18 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=26.9
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.+.+.+.+.....+. + +..+....+.+.+|+++.++|+.|
T Consensus 232 ~~~i~i~~~~~~~~~-~---~~~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFPS-E---DAQADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 366666543222222 2 245678999999999999999865
No 83
>PRK14680 hypothetical protein; Provisional
Probab=29.96 E-value=2e+02 Score=20.72 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=40.4
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~ 156 (159)
.|++++-+ +..-.++|.++.. +|++.|=-.+.+-.......|.+.+. ...-..+.+.-..||..++.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~~ 90 (134)
T PRK14680 24 GHRILARN-----WRHGGLELDIVCE-DGDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHDA 90 (134)
T ss_pred CCEEEEee-----cCCCCCeEEEEEE-eCCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCCC
Confidence 57777665 4444688999887 45677766666654433322333331 22345677778888887763
No 84
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=29.58 E-value=2.7e+02 Score=21.67 Aligned_cols=141 Identities=9% Similarity=-0.007 Sum_probs=73.0
Q ss_pred EEEEEEeccCHHHHHHHhhcCCCCcccccCCceeeEEEEcCCCccceE-EEEEeeCCCc----eeEEE-EEEEEEeCCCc
Q 031475 6 FEREYPAAVAASRMFKAFVDSPNLLPKATPQAFKSIEVLEGDGGVGTV-TLWTFPDGGH----YKQVK-QRIDALDNDNF 79 (159)
Q Consensus 6 ~~~e~~i~a~a~~vw~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsi-r~~~~~~g~~----~~~~k-Erl~~~D~~~~ 79 (159)
+..|-.++..++++|..+.+... -.+|=|. ++++++++.=+.-=+| |.++....+. ...+- -+.....+.-.
T Consensus 49 ~R~Egvv~~~~~ev~d~v~~~~~-r~~Wd~~-v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~ 126 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIRPGPY-RLDWDSL-MTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLL 126 (202)
T ss_pred EEEEEEecCCHHHHHHHHhcccc-hhcccch-hhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeE
Confidence 55677788999999999987665 6789985 9999998742110123 3444333221 11111 11122222222
Q ss_pred eEEEEEEecCCCccce---eeEEEEEEEeecCCC--ccEEEEEEEEEEcCCCCCChhhh-HHHHHHHHHHHHHHHHHH
Q 031475 80 TCKYTMYDGDGILAVA---EKGVYDVKIEASGNG--GCVYKFAAEVYVKDGEELKEEHV-KDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 80 ~~~y~~~eg~~~~~~~---~~y~~ti~v~~~~~g--~s~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l 151 (159)
+..-++ +.+.++.+| .++-+-+-+.|.+++ .|.+.|-+..+..+. . |...+ +.+-.....++..|..+|
T Consensus 127 s~gvs~-~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~-L-PqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 127 SCGVSI-EYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM-L-PQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEeee-cCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC-c-cHHHHHHHhhHHHHHHHHHHHHhc
Confidence 333332 222221111 222334566777665 788999999777643 2 23322 222223445555555443
No 85
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=29.05 E-value=1e+02 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 031475 136 AEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 136 ~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
..+....+.+.||+++..+|+.|
T Consensus 256 ~~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 256 PLRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHh
Confidence 34677899999999999999965
No 86
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.95 E-value=1e+02 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.|.+.+++.....+.. +..+....+.+.||+++.++|+.|
T Consensus 251 ~~~i~~~~~~~~~~~~----d~~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPPLD----DAEATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHcCchHH
Confidence 4666666543222222 234577888899999999999865
No 87
>PRK12497 hypothetical protein; Reviewed
Probab=28.71 E-value=2.1e+02 Score=20.00 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=39.0
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~ 156 (159)
.|++++-+ +..-.+.|.++... |++.|=-.+.+-.......|.+.+. ......+.++-..||..+|.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~~eav~--~~K~~ri~~aA~~yL~~~~~ 90 (119)
T PRK12497 24 GLRILARN-----FRCRFGEIDLIARD-GDTLVFVEVKTRRSDRFGGAAEAVT--PRKQRRLRRAAQLWLARHPS 90 (119)
T ss_pred CCEEEcce-----ecCCCCcEeeeEEe-CCEEEEEEEEeccCCCCCCHHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46666554 44446788888774 5666666666654432222233221 12345677788889988864
No 88
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=28.61 E-value=1.1e+02 Score=24.75 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.+.+.+++.....+. + +..+....+.+.+|+++.++|+.|
T Consensus 245 ~~~i~~~~~~~~~~~-~---~~~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFPG-D---DEIAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 366666643222222 2 235678899999999999999865
No 89
>PRK14681 hypothetical protein; Provisional
Probab=28.51 E-value=2.5e+02 Score=20.97 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=41.5
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~ 156 (159)
.|++++-+ +..-.++|.++...++++.|=..+.+-.......+.+.+. ...-..+.+.-+.||..++.
T Consensus 61 Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 61 GWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 57777654 5555688999987544577776777655443333333331 22345677777888887763
No 90
>PRK14688 hypothetical protein; Provisional
Probab=27.34 E-value=2.3e+02 Score=20.04 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=38.6
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANP 155 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 155 (159)
.|++++-+ +..-.++|.++.. +|++.|=..+.+-.......|.+.+. ......+.++-+.||..++
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lVFVEVK~R~~~~~g~~~eaV~--~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTN-----CRLPEGEIDIVGQ-DGEYLVFIEVRTKRRLGYGLPAESVT--PRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEE-----eeCCCCcEeEEEe-eCCEEEEEEEEecCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 46776654 5555688899887 45577666666544332222233221 2234566777788887776
No 91
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=26.88 E-value=1.2e+02 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=27.2
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
+|.+.+++.....+.. +..+....+.+.+|+++.++|+.|
T Consensus 257 ~~~i~~~~~~~~~~~~----d~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLSA----DDETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 4666676543222222 235678899999999999999865
No 92
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=26.82 E-value=1.2e+02 Score=18.01 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCC
Q 031475 133 VKDAEERGTGLYKVLEAYLVANP 155 (159)
Q Consensus 133 ~~~~~~~~~~~~k~le~~l~~~~ 155 (159)
.+.+++.+.+.++.||..|..++
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 34567788999999999998887
No 93
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=26.67 E-value=2.2e+02 Score=22.63 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=28.6
Q ss_pred EEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 114 YKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 114 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
..|.+.+++.-.....+ +..+....+.+.||+.+.++|+.|
T Consensus 246 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE----DIEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc----hHHHHHHHHHHHHHHHHHcChHhh
Confidence 56677777543322222 245678999999999999999864
No 94
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=25.45 E-value=1.5e+02 Score=21.58 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 031475 136 AEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 136 ~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
..+.+..+.+.||+.+.++|+.|
T Consensus 162 ~~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 162 VEEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 45778899999999999999864
No 95
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.03 E-value=1.3e+02 Score=24.51 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=25.7
Q ss_pred EEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 031475 115 KFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 115 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.|.+.+++.....+..+ ..+....+.+.+|+++.++|+.|
T Consensus 249 ~~~i~~~~~~~~~~~~~----~~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFPGES----EEADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCCCCC----HHHHHHHHHHHHHHHHHcCcHHH
Confidence 46666664322222222 23456899999999999999864
No 96
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=23.64 E-value=59 Score=26.26 Aligned_cols=19 Identities=42% Similarity=0.871 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 031475 139 RGTGLYKVLEAYLVANPDL 157 (159)
Q Consensus 139 ~~~~~~k~le~~l~~~~~~ 157 (159)
.=-+++++|+.||.+||..
T Consensus 218 ~hD~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 218 SHDGLYRAIDIYLKAHPGL 236 (258)
T ss_pred ccchHHHHHHHHHHHcccC
Confidence 3358999999999999974
No 97
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=22.02 E-value=3.7e+02 Score=21.72 Aligned_cols=53 Identities=13% Similarity=-0.095 Sum_probs=35.4
Q ss_pred EecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 031475 86 YDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
++-+++ ....+++|++-.+.++=.+.++|...|...+ +.++...|++.++..-
T Consensus 84 lnQPvF--~aNyikGtV~pvpgGg~~g~as~Kl~F~~GG-----------~ieFgq~~l~~~s~a~ 136 (261)
T KOG3294|consen 84 LNQPVF--GANYIKGTVQPVPGGGWEGEASFKLTFNEGG-----------CIEFGQLLLQAASRAS 136 (261)
T ss_pred ecCccc--ccceeeeeEeecCCCCccceeEEEEEecCCC-----------chhHHHHHHHHHHHHH
Confidence 344454 3556789999887754368999999998654 2346666666666544
No 98
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=22.02 E-value=3.3e+02 Score=20.03 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=34.9
Q ss_pred EEEEEEEEEeCCCceEEEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEc
Q 031475 66 QVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVK 123 (159)
Q Consensus 66 ~~kErl~~~D~~~~~~~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~ 123 (159)
.+.+-++-+|+.+..++|.+-+-- +. -.-.+.+.+-+.-.+++.+...-.+.|+-.
T Consensus 69 ~~~~~~~i~d~~~G~i~y~lp~~~-l~-~~G~v~a~~~i~~~~~~~~~~t~~F~F~V~ 124 (170)
T PF10651_consen 69 FIQDDVEIVDPTNGIIQYTLPDEF-LK-HVGKVKAQLFIYYNGDGQSISTANFTFEVE 124 (170)
T ss_dssp SEEEE-SEEETTTTEEEEE--TTT-TH-SSEEEEEEEEEEEESSSEEEE---EEEEEE
T ss_pred EEEecceEEcCcCcEEEEEECHHH-hc-cCcEEEEEEEEEECCCCCEEEEeeEEEEEe
Confidence 566778888999999999985543 32 356677888887665665555555666643
No 99
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=21.01 E-value=1.4e+02 Score=26.38 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=43.9
Q ss_pred eEEEEEEEEEeCCCceEEEEEEecCCCcccee--eEEEEEEEeecC--------CCccEEEEEEEEEEcCCCCCChhhh-
Q 031475 65 KQVKQRIDALDNDNFTCKYTMYDGDGILAVAE--KGVYDVKIEASG--------NGGCVYKFAAEVYVKDGEELKEEHV- 133 (159)
Q Consensus 65 ~~~kErl~~~D~~~~~~~y~~~eg~~~~~~~~--~y~~ti~v~~~~--------~g~s~v~W~~~~~~~~~~~~~~~~~- 133 (159)
..+||||+ +|... ++=+++.-.+..... +=.+++.+.... +|..++.|-..+-..+...+.+...
T Consensus 248 ~~vkekI~-ld~~~---S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~ 323 (466)
T PF04780_consen 248 SRVKEKID-LDSDF---SCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMR 323 (466)
T ss_pred cccceeee-cCCcc---ceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHH
Confidence 47999988 66554 244555544322122 223455533222 2568999999988887665544421
Q ss_pred HHHHHHHHHHHHHHHH
Q 031475 134 KDAEERGTGLYKVLEA 149 (159)
Q Consensus 134 ~~~~~~~~~~~k~le~ 149 (159)
..-.+.-.+++++++.
T Consensus 324 ~~~~~~~~avl~~v~~ 339 (466)
T PF04780_consen 324 EHNLDIWVAVLRAVEK 339 (466)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 1223334445555544
No 100
>PRK14684 hypothetical protein; Provisional
Probab=20.91 E-value=3.1e+02 Score=19.31 Aligned_cols=67 Identities=9% Similarity=-0.052 Sum_probs=39.3
Q ss_pred EEEEEecCCCccceeeEEEEEEEeecCCCccEEEEEEEEEEcCCCCCChhhhHHHHHHHHHHHHHHHHHHhhCCC
Q 031475 82 KYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAEERGTGLYKVLEAYLVANPD 156 (159)
Q Consensus 82 ~y~~~eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~ 156 (159)
.|++++-+ +..-.++|.++.. +|++.|=..+.+-.......+.+.+. ...-..+.+.-+.||..++.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lvFVEVK~R~~~~~g~~~eaV~--~~K~~rl~r~A~~yL~~~~~ 90 (120)
T PRK14684 24 GLSFITKN-----FRYKQGEIDLIMS-DQSMLVFIEVRYRRFSDFIHPVATVT--PLKQRRLIKTALHYLQKHRL 90 (120)
T ss_pred CCEEEEEE-----ecCCCCeEEEEEE-eCCEEEEEEEeEcCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46666554 4455688999887 45677766666654432222223221 12345667777888887773
No 101
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.62 E-value=1.9e+02 Score=23.27 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q 031475 137 EERGTGLYKVLEAYLVANPDLY 158 (159)
Q Consensus 137 ~~~~~~~~k~le~~l~~~~~~~ 158 (159)
.+....+.+.+|+++.++|+.|
T Consensus 254 ~~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 254 DLDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHHcCcHhH
Confidence 3568899999999999999865
Done!