BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031476
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY +LG++ AS DI+ AY KLA++WHPD KNP EA+ +F+ + EAY VLSD
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 74 KRSMYD 79
KRS+YD
Sbjct: 68 KRSLYD 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY +L + + AS I+ AY KLA+KWHPD KNP EA+ RF+Q+ EAY VLSD
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 74 KRSMYD 79
KR +YD
Sbjct: 68 KRDIYD 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG+ K A +IR AY +LAMK+HPDR+ + EA+ +F++I+EAY VL+D
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 74 KRSMYD 79
KR+ YD
Sbjct: 61 KRAAYD 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG+ K A +IR AY +LAMK+HPDR+ + EA+ +F++I+EAY VL+D
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 74 KRSMYD 79
KR+ YD
Sbjct: 61 KRAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG+ K A +IR AY +LAMK+HPDR+ + EA+ +F++I+EAY VL+D
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 74 KRSMYD 79
KR+ YD
Sbjct: 61 KRAAYD 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 4/67 (5%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG+ ++AS +I+ AY++LA K+HPD + +P +AK +F Q+ EAY VLSDE
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEV 64
Query: 74 KRSMYDA 80
KR YDA
Sbjct: 65 KRKQYDA 71
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 7/68 (10%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY +LG++ DAS ++++ AY K+A+K+HPD KNP A + F+QI +AY VLSDE
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQ----FKQISQAYEVLSDEK 62
Query: 74 KRSMYDAG 81
KR +YD G
Sbjct: 63 KRQIYDQG 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG+ K AS I+ A+HKLAMK+HPD++ K+P +A+ +F++I EAY LSD N
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSP----DAEAKFREIAEAYETLSDAN 63
Query: 74 KRSMYD 79
+R YD
Sbjct: 64 RRKEYD 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 7/68 (10%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY +LG++ +A+ +++ AY KLA+K+HPD KNP GE +F+QI +AY VLSD
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPD---KNPN-EGE---KFKQISQAYEVLSDAK 60
Query: 74 KRSMYDAG 81
KR +YD G
Sbjct: 61 KRELYDKG 68
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 8/73 (10%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
Y +LG+ K+A+ DI+ +Y KLA+K+HPD++ NP EA +F++I A+++L+D K
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATK 75
Query: 75 RSMYDA----GLY 83
R++YD GLY
Sbjct: 76 RNIYDKYGSLGLY 88
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
Y +LG+ + AS +DI+ AY KLA +WHPD++ K+PG A+ RF QI +AY +LS+E K
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPG----AEDRFIQISKAYEILSNEEK 74
Query: 75 RSMYD 79
R+ YD
Sbjct: 75 RTNYD 79
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY IL + + AS DI+ AY + A++WHPD KNP A+ +F+++ EAY VLSD++
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 74 KRSMYD 79
KR +YD
Sbjct: 61 KREIYD 66
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
+Y++LG+ K AS +IR A+ KLA+K HPD++ NP G+ F +I AY VL DE+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD----FLKINRAYEVLKDED 59
Query: 74 KRSMYD 79
R YD
Sbjct: 60 LRKKYD 65
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
+Y++LG+ K AS +IR A+ KLA+K HPD++ NP G+ F +I AY VL DE+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD----FLKINRAYEVLKDED 78
Query: 74 KRSMYD 79
R YD
Sbjct: 79 LRKKYD 84
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YYAI+G++ I++AY +LA K+HPD S K P +A+ RF+++ EA+ VLSDE
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEP----DAEARFKEVAEAWEVLSDEQ 61
Query: 74 KRSMYD 79
+R+ YD
Sbjct: 62 RRAEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YYAILG++ I++AY +LA K+HPD S +N +A+ +F+ + EA+ VL DE
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWEVLKDEQ 84
Query: 74 KRSMYD 79
+R+ YD
Sbjct: 85 RRAEYD 90
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY LG+ + AS +I+ AY + A+++HPD++ K PG A+ +F++I EAY VLSD
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPG----AEEKFKEIAEAYDVLSDPR 59
Query: 74 KRSMYD 79
KR ++D
Sbjct: 60 KREIFD 65
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG+ + AS D++ AY +LA+K+HPD++ PG A EA F+ I AY+VLS+
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPG-ATEA---FKAIGTAYAVLSNPE 63
Query: 74 KRSMYD 79
KR YD
Sbjct: 64 KRKQYD 69
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG++++A +I AY KLA++WHPD + +N +A+ +F I A VLSD
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 74 KRSMYDAG 81
R +D G
Sbjct: 443 XRKKFDDG 450
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY ILG++++A +I AY KLA++WHPD + +N +A+ +F I A VLSD
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 74 KRSMYDAG 81
R +D G
Sbjct: 443 MRKKFDDG 450
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
Y +LG+ A+ + I++AY++ +HPDR N G A EA RF +I +AY VL
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDR---NSGSA-EAAERFTRISQAYVVLGSATL 75
Query: 75 RSMYDAGLYDPLEEEDEDFYG 95
R YD GL DED G
Sbjct: 76 RRKYDRGLL-----SDEDLRG 91
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN--PGVAGEAKCRFQQIQEAYSVLSD 71
+Y+ILG A+ SD++ Y KL + +HPD+ + + G E +F +I +A+ +L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 72 ENKRSMYD 79
E + YD
Sbjct: 72 EETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR-SAKNP-GVAGEAKCRFQQIQEAYSVLSD 71
+Y+ILG A+ SD++ Y KL + +HPD+ SA P G E +F +I +A+ +L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 72 ENKRSMYD 79
E + YD
Sbjct: 78 EETKKKYD 85
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
Y +LG+ A+ +++ Y K A+K+HPD+ G+ + +F++I EA+ +L+D K
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKP------TGDTE-KFKEISEAFEILNDPQK 63
Query: 75 RSMYD 79
R +YD
Sbjct: 64 REIYD 68
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
YY +LG + +S I + + A++ HPD+ +NP +A FQ++Q+A +L++E
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEE 77
Query: 74 KRSMYD 79
R+ YD
Sbjct: 78 SRARYD 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 15 YAILGI-RKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
Y +L + R++ + AY LA K HPDR KN A+ RF+ I AY L D+
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETLKDDE 76
Query: 74 KRSMYDAGLYDPLEEEDEDFYGFVQ 98
++ YD L P D+ FY + Q
Sbjct: 77 AKTNYDYYLDHP----DQRFYNYYQ 97
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDR 44
+ +LG++ AS ++ AY KLA+ HPD+
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 27 SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
S+ + +L +KWHPD++ +N +A E F+ +Q + L +
Sbjct: 31 SERKKIIRRLYLKWHPDKNPENHDIANEV---FKHLQNEINRLEKQ 73
>pdb|3CFA|L Chain L, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|M Chain M, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|R Chain R, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|S Chain S, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFF|L Chain L, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|M Chain M, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|R Chain R, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|S Chain S, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFH|L Chain L, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|M Chain M, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|R Chain R, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|S Chain S, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
Length = 62
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 108 KDEGDSFEDLQRMFVEMVDGMSFDFNYD 135
K EG+ FE Q M +E+++G F +D
Sbjct: 29 KGEGNPFEGTQDMKIEVIEGGPLPFAFD 56
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
+ +G+ + ++ Y K + HPD++ P AK F ++ +A+S ++ +
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEFENQGQ 110
Query: 75 RSMY 78
+ +Y
Sbjct: 111 KPLY 114
>pdb|1DGN|A Chain A, Solution Structure Of Iceberg, An Inhibitor Of
Interleukin- 1beta Generation
Length = 89
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 104 MNNVKDEGDSFEDLQRMFVEMVDG 127
MN V+DE D+ D R+ +++V G
Sbjct: 39 MNKVRDENDTVMDKARVLIDLVTG 62
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 29 IRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78
++ Y K + HPD++ P AK F ++ +A+S ++ ++ +Y
Sbjct: 53 VKKVYRKAVLVVHPDKATGQP-YEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|1GX5|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Gtp And
Manganese
Length = 536
Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 110 EGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS---RC 159
E + D+ ++V G S+ F Y P VNT K K G S RC
Sbjct: 171 EKXALYDVVSTLPQVVXGSSYGFQYSPGQRVEFLVNTWKSKKNPXGFSYDTRC 223
>pdb|1GX6|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Utp And
Manganese
Length = 531
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 110 EGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS---RC 159
E + D+ ++V G S+ F Y P VNT K K G S RC
Sbjct: 171 EKXALYDVVSTLPQVVXGSSYGFQYSPGQRVEFLVNTWKSKKNPXGFSYDTRC 223
>pdb|1CSJ|A Chain A, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
pdb|1CSJ|B Chain B, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
Length = 531
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 110 EGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS---RC 159
E + D+ ++V G S+ F Y P VNT K K G S RC
Sbjct: 171 EKXALYDVVSTLPQVVXGSSYGFQYSPGQRVEFLVNTWKSKKNPXGFSYDTRC 223
>pdb|1C2P|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
pdb|1C2P|B Chain B, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Length = 576
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 110 EGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS---RC 159
E + D+ ++V G S+ F Y P VNT K K G S RC
Sbjct: 177 EKXALYDVVSTLPQVVXGSSYGFQYSPGQRVEFLVNTWKSKKNPXGFSYDTRC 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,434,424
Number of Sequences: 62578
Number of extensions: 170347
Number of successful extensions: 502
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 42
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)