Query 031476
Match_columns 159
No_of_seqs 205 out of 1972
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 14:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 5.1E-36 1.1E-40 245.5 9.4 140 9-156 1-157 (371)
2 PRK14288 chaperone protein Dna 100.0 9.5E-30 2.1E-34 211.2 10.4 126 11-140 2-143 (369)
3 PRK14296 chaperone protein Dna 100.0 2.8E-29 6E-34 208.6 9.6 134 11-153 3-161 (372)
4 PRK14286 chaperone protein Dna 100.0 5.9E-29 1.3E-33 206.7 9.4 137 11-155 3-164 (372)
5 KOG0712 Molecular chaperone (D 100.0 7.8E-29 1.7E-33 200.9 6.4 137 10-157 2-143 (337)
6 PTZ00037 DnaJ_C chaperone prot 100.0 2.6E-28 5.6E-33 205.2 9.8 124 10-141 26-154 (421)
7 PRK14279 chaperone protein Dna 100.0 2.1E-28 4.6E-33 204.5 8.9 138 9-154 6-186 (392)
8 PRK14287 chaperone protein Dna 100.0 2.6E-28 5.7E-33 202.7 9.0 134 11-153 3-150 (371)
9 PRK14285 chaperone protein Dna 100.0 2.9E-28 6.3E-33 202.1 9.2 135 12-154 3-159 (365)
10 PRK14276 chaperone protein Dna 100.0 3.2E-28 6.9E-33 202.8 9.5 136 11-155 3-160 (380)
11 PRK14301 chaperone protein Dna 99.9 1.1E-27 2.3E-32 199.2 10.8 135 11-153 3-156 (373)
12 PRK14278 chaperone protein Dna 99.9 5.4E-28 1.2E-32 201.3 8.9 135 12-155 3-153 (378)
13 PRK14298 chaperone protein Dna 99.9 4.9E-28 1.1E-32 201.4 8.5 136 11-155 4-155 (377)
14 PRK14277 chaperone protein Dna 99.9 9.9E-28 2.1E-32 200.2 9.9 135 11-153 4-167 (386)
15 PRK10767 chaperone protein Dna 99.9 8.6E-28 1.9E-32 199.7 9.1 126 11-140 3-145 (371)
16 PRK14297 chaperone protein Dna 99.9 8.9E-28 1.9E-32 200.1 9.1 136 11-154 3-161 (380)
17 PRK14280 chaperone protein Dna 99.9 1.1E-27 2.4E-32 199.4 9.1 135 11-154 3-156 (376)
18 PRK14294 chaperone protein Dna 99.9 1.3E-27 2.8E-32 198.3 9.4 135 11-153 3-156 (366)
19 PRK14282 chaperone protein Dna 99.9 1.4E-27 3E-32 198.3 9.3 137 11-154 3-165 (369)
20 PRK14295 chaperone protein Dna 99.9 1.7E-27 3.6E-32 198.9 8.2 137 11-155 8-180 (389)
21 PRK14284 chaperone protein Dna 99.9 3.6E-27 7.8E-32 197.1 8.1 135 12-154 1-171 (391)
22 PRK14291 chaperone protein Dna 99.9 8.4E-27 1.8E-31 194.4 9.3 134 11-153 2-168 (382)
23 TIGR02349 DnaJ_bact chaperone 99.9 1.9E-26 4.2E-31 190.5 9.4 133 13-154 1-156 (354)
24 PRK14281 chaperone protein Dna 99.9 2.7E-26 5.8E-31 192.2 9.6 134 12-153 3-175 (397)
25 PRK14290 chaperone protein Dna 99.9 3.7E-26 8E-31 189.6 10.0 126 12-140 3-152 (365)
26 PRK14283 chaperone protein Dna 99.9 2.6E-26 5.7E-31 191.2 9.0 134 11-153 4-158 (378)
27 PRK14292 chaperone protein Dna 99.9 8.6E-26 1.9E-30 187.7 9.6 133 12-153 2-151 (371)
28 PRK14300 chaperone protein Dna 99.9 1.2E-25 2.6E-30 186.9 9.5 133 12-153 3-157 (372)
29 KOG0713 Molecular chaperone (D 99.9 4.6E-26 1E-30 183.2 6.6 125 10-138 14-154 (336)
30 PRK14289 chaperone protein Dna 99.9 1.2E-25 2.7E-30 187.6 9.4 134 11-152 4-165 (386)
31 PRK14293 chaperone protein Dna 99.9 1.4E-25 3.1E-30 186.6 9.5 124 12-140 3-146 (374)
32 KOG0715 Molecular chaperone (D 99.9 2.7E-24 5.9E-29 173.1 8.9 138 11-157 42-180 (288)
33 PRK14299 chaperone protein Dna 99.9 1E-23 2.2E-28 170.3 8.6 121 11-136 3-155 (291)
34 PRK10266 curved DNA-binding pr 99.9 8.9E-23 1.9E-27 165.8 7.9 122 11-137 3-144 (306)
35 PF00226 DnaJ: DnaJ domain; I 99.8 7.8E-21 1.7E-25 120.5 5.2 64 13-79 1-64 (64)
36 KOG0719 Molecular chaperone (D 99.8 3.1E-20 6.7E-25 142.8 8.4 90 10-103 12-101 (264)
37 KOG0717 Molecular chaperone (D 99.8 2.5E-20 5.4E-25 154.9 7.0 70 9-81 5-74 (508)
38 KOG0716 Molecular chaperone (D 99.8 3.1E-20 6.7E-25 145.6 5.8 68 11-82 30-97 (279)
39 KOG0718 Molecular chaperone (D 99.8 4.2E-20 9.2E-25 153.7 5.6 77 10-87 7-83 (546)
40 KOG0691 Molecular chaperone (D 99.8 2.2E-19 4.8E-24 144.3 7.2 70 11-84 4-73 (296)
41 smart00271 DnaJ DnaJ molecular 99.8 2.7E-18 5.8E-23 107.2 6.8 59 12-73 1-59 (60)
42 PTZ00341 Ring-infected erythro 99.7 3.6E-18 7.7E-23 152.7 8.5 71 10-85 571-641 (1136)
43 cd06257 DnaJ DnaJ domain or J- 99.7 9.3E-18 2E-22 102.9 6.6 55 13-71 1-55 (55)
44 PHA03102 Small T antigen; Revi 99.7 5.3E-17 1.2E-21 119.3 6.8 67 12-86 5-73 (153)
45 COG2214 CbpA DnaJ-class molecu 99.7 7.9E-17 1.7E-21 122.5 6.5 69 9-80 3-71 (237)
46 PRK05014 hscB co-chaperone Hsc 99.7 1.1E-16 2.5E-21 120.1 6.7 71 12-82 1-74 (171)
47 TIGR03835 termin_org_DnaJ term 99.7 1.6E-16 3.5E-21 139.5 8.0 69 12-85 2-70 (871)
48 KOG0721 Molecular chaperone (D 99.7 1.6E-16 3.4E-21 121.3 6.8 71 10-84 97-167 (230)
49 PRK01356 hscB co-chaperone Hsc 99.6 2.1E-16 4.5E-21 118.1 5.8 71 12-83 2-74 (166)
50 PRK00294 hscB co-chaperone Hsc 99.6 4.5E-16 9.8E-21 116.9 6.8 75 9-83 1-78 (173)
51 KOG0624 dsRNA-activated protei 99.6 2.3E-16 5E-21 128.4 5.2 73 9-82 391-463 (504)
52 PRK03578 hscB co-chaperone Hsc 99.6 8.9E-16 1.9E-20 115.7 6.6 73 10-82 4-79 (176)
53 KOG0720 Molecular chaperone (D 99.6 2.4E-16 5.2E-21 131.2 3.7 69 11-84 234-302 (490)
54 COG5269 ZUO1 Ribosome-associat 99.6 6.7E-16 1.5E-20 121.5 5.7 100 7-108 38-145 (379)
55 PTZ00100 DnaJ chaperone protei 99.5 1.7E-14 3.6E-19 101.3 5.3 60 3-70 56-115 (116)
56 KOG0722 Molecular chaperone (D 99.5 9.8E-15 2.1E-19 114.0 3.3 73 8-85 29-101 (329)
57 PRK09430 djlA Dna-J like membr 99.5 3E-14 6.5E-19 113.9 5.9 62 10-71 198-262 (267)
58 KOG0550 Molecular chaperone (D 99.5 3.1E-14 6.8E-19 117.8 4.2 71 9-82 370-440 (486)
59 PRK01773 hscB co-chaperone Hsc 99.4 1.4E-13 3E-18 103.4 5.9 72 12-83 2-76 (173)
60 PHA02624 large T antigen; Prov 99.4 5E-13 1.1E-17 116.1 7.1 84 11-102 10-98 (647)
61 KOG0714 Molecular chaperone (D 99.4 2.7E-13 5.8E-18 107.6 4.7 70 11-83 2-71 (306)
62 KOG1150 Predicted molecular ch 99.4 5.4E-13 1.2E-17 101.0 5.0 72 5-79 46-117 (250)
63 COG5407 SEC63 Preprotein trans 99.3 2.8E-12 6.1E-17 107.2 4.9 74 10-83 96-170 (610)
64 TIGR00714 hscB Fe-S protein as 99.2 1.6E-11 3.5E-16 91.0 6.1 61 23-83 2-63 (157)
65 KOG0723 Molecular chaperone (D 98.6 5.2E-08 1.1E-12 66.9 4.6 63 2-72 46-108 (112)
66 KOG0568 Molecular chaperone (D 98.5 1.1E-07 2.4E-12 74.0 4.5 58 10-72 45-103 (342)
67 KOG1789 Endocytosis protein RM 98.4 2.8E-07 6E-12 84.3 5.7 53 11-70 1280-1336(2235)
68 KOG3192 Mitochondrial J-type c 97.9 1.3E-05 2.8E-10 58.8 4.2 74 9-82 5-81 (168)
69 KOG0431 Auxilin-like protein a 97.5 0.00016 3.5E-09 62.0 4.8 50 19-68 395-447 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.4 5.9E-05 1.3E-09 56.8 1.6 58 12-69 113-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 97.2 0.00024 5.2E-09 53.4 2.3 72 13-84 2-76 (174)
72 PF03656 Pam16: Pam16; InterP 96.0 0.014 3.1E-07 41.7 4.8 53 13-73 59-111 (127)
73 PF14687 DUF4460: Domain of un 95.5 0.029 6.2E-07 39.3 4.5 53 22-74 4-56 (112)
74 PF13446 RPT: A repeated domai 93.4 0.25 5.4E-06 30.5 4.8 27 12-38 5-31 (62)
75 PF11833 DUF3353: Protein of u 90.9 0.39 8.4E-06 36.8 4.2 38 21-70 1-38 (194)
76 KOG0724 Zuotin and related mol 87.4 0.49 1.1E-05 38.9 2.6 58 23-80 3-60 (335)
77 PF07709 SRR: Seven Residue Re 67.1 3.3 7.2E-05 17.9 0.9 13 58-70 2-14 (14)
78 COG5552 Uncharacterized conser 63.3 34 0.00073 22.2 5.3 32 13-44 4-35 (88)
79 PF12434 Malate_DH: Malate deh 62.1 10 0.00023 19.6 2.3 18 25-42 9-26 (28)
80 KOG3442 Uncharacterized conser 61.8 11 0.00025 26.8 3.2 32 14-45 61-92 (132)
81 PRK15321 putative type III sec 57.8 18 0.0004 24.7 3.5 36 6-41 10-50 (120)
82 cd01388 SOX-TCF_HMG-box SOX-TC 55.8 24 0.00051 22.0 3.7 41 31-80 14-54 (72)
83 cd00084 HMG-box High Mobility 47.8 40 0.00086 19.9 3.8 41 30-79 12-52 (66)
84 cd01390 HMGB-UBF_HMG-box HMGB- 47.5 40 0.00087 20.1 3.8 39 32-79 14-52 (66)
85 cd01389 MATA_HMG-box MATA_HMG- 43.9 50 0.0011 20.8 3.9 41 30-79 13-53 (77)
86 PF07739 TipAS: TipAS antibiot 37.0 71 0.0015 21.4 4.1 50 19-81 51-101 (118)
87 PF00505 HMG_box: HMG (high mo 35.5 71 0.0015 19.2 3.5 39 30-77 12-50 (69)
88 PF08447 PAS_3: PAS fold; Int 35.0 11 0.00024 23.7 -0.3 30 11-44 5-35 (91)
89 KOG0527 HMG-box transcription 33.0 55 0.0012 27.3 3.4 42 30-80 74-115 (331)
90 KOG2320 RAS effector RIN1 (con 32.5 41 0.00089 30.2 2.7 26 19-44 396-421 (651)
91 PF10041 DUF2277: Uncharacteri 32.5 1.4E+02 0.0031 19.4 6.0 31 15-45 6-36 (78)
92 PF12725 DUF3810: Protein of u 31.9 65 0.0014 26.5 3.7 68 7-75 77-152 (318)
93 TIGR03835 termin_org_DnaJ term 30.2 20 0.00043 33.3 0.4 27 112-138 658-684 (871)
94 smart00398 HMG high mobility g 29.5 1.1E+02 0.0024 18.1 3.7 40 31-79 14-53 (70)
95 COG0089 RplW Ribosomal protein 29.4 45 0.00097 22.6 1.9 21 17-37 25-45 (94)
96 TIGR03759 conj_TIGR03759 integ 29.2 1.1E+02 0.0025 23.5 4.3 38 1-40 26-63 (200)
97 PRK10613 hypothetical protein; 28.9 22 0.00047 22.8 0.3 11 25-35 64-74 (74)
98 PF15178 TOM_sub5: Mitochondri 28.7 97 0.0021 18.2 3.0 23 15-37 2-24 (51)
99 PF10769 DUF2594: Protein of u 26.4 26 0.00056 22.5 0.3 11 25-35 64-74 (74)
100 COG2879 Uncharacterized small 26.2 1.4E+02 0.003 18.7 3.5 15 32-46 27-41 (65)
101 PF10475 DUF2450: Protein of u 25.8 63 0.0014 26.0 2.6 35 25-73 180-214 (291)
102 PRK07394 hypothetical protein; 25.3 56 0.0012 27.2 2.2 35 2-36 118-157 (342)
103 PF04719 TAFII28: hTAFII28-lik 23.2 67 0.0015 21.5 1.9 14 23-36 77-90 (90)
104 CHL00030 rpl23 ribosomal prote 23.2 70 0.0015 21.5 2.0 21 17-37 23-43 (93)
105 cd01780 PLC_epsilon_RA Ubiquit 23.0 83 0.0018 21.2 2.3 35 11-45 10-44 (93)
106 PF00076 RRM_1: RNA recognitio 22.8 60 0.0013 19.0 1.5 23 17-39 3-25 (70)
107 PRK05820 deoA thymidine phosph 22.8 65 0.0014 27.9 2.2 36 1-36 111-149 (440)
108 PRK09071 hypothetical protein; 20.3 81 0.0017 26.1 2.2 26 11-36 124-149 (323)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=245.50 Aligned_cols=140 Identities=35% Similarity=0.478 Sum_probs=114.8
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE 88 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~ 88 (159)
|...|||+||||+++||.+|||+|||+||++||||+++.++ +|.++|++|++||+|||||++|++||.++......
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~----~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~ 76 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKA 76 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHhhccCcccccc
Confidence 35689999999999999999999999999999999987543 79999999999999999999999999877554321
Q ss_pred cc--------c--hhhhHHHHHHhhc-------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcc
Q 031476 89 ED--------E--DFYGFVQEMVSMM-------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKA 151 (159)
Q Consensus 89 ~~--------~--~f~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~ 151 (159)
.+ . +|.++|+++|+.. .+..++.|+..++.++|+|++.|.++.+.+.+.. .|.+|.|++
T Consensus 77 gg~gg~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~----~C~~C~GsG 152 (371)
T COG0484 77 GGFGGFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSV----TCSTCHGSG 152 (371)
T ss_pred CCcCCCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceee----ECCcCCCCC
Confidence 00 1 3677788887421 2244666789999999999999999999996664 788888887
Q ss_pred cCCCC
Q 031476 152 AKRGT 156 (159)
Q Consensus 152 ~k~~~ 156 (159)
+|.++
T Consensus 153 ak~gt 157 (371)
T COG0484 153 AKPGT 157 (371)
T ss_pred CCCCC
Confidence 77774
No 2
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=9.5e-30 Score=211.18 Aligned_cols=126 Identities=34% Similarity=0.526 Sum_probs=95.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++||.+|||+|||+||++||||+++.++ .|.++|++|++||+||+||.+|++||.++......
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~----~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~ 77 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAG 77 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc----HHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCC
Confidence 369999999999999999999999999999999976443 58899999999999999999999999865432110
Q ss_pred -ccchhh-------hHHHHHHhhc------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcc
Q 031476 89 -EDEDFY-------GFVQEMVSMM------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQ 140 (159)
Q Consensus 89 -~~~~f~-------~~~~~~~~~~------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~ 140 (159)
....|. ++|+.+|+.. ...+++.++..++.++|+|+|.|+++.+.+.+.+.|
T Consensus 78 ~~~~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C 143 (369)
T PRK14288 78 ASQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVC 143 (369)
T ss_pred CCccccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccC
Confidence 011222 2333333210 011344567888999999999999999999776544
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=2.8e-29 Score=208.58 Aligned_cols=134 Identities=28% Similarity=0.388 Sum_probs=100.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.+|||+|||+||++||||+++. + .|.++|++|++||+|||||.+|+.||.++......
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~----~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~ 77 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-P----DAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS 77 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----hHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC
Confidence 4799999999999999999999999999999999752 2 58899999999999999999999999865321100
Q ss_pred ------c-------------cchhhhHHHHHHhhc----cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceec
Q 031476 89 ------E-------------DEDFYGFVQEMVSMM----NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVN 145 (159)
Q Consensus 89 ------~-------------~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~ 145 (159)
. ...|.++|..+|+.. ....++.++..++.++|+|+|+|+++.+.+.+.+ .|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~----~C~ 153 (372)
T PRK14296 78 GFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLT----NCS 153 (372)
T ss_pred CcCcCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeee----ccC
Confidence 0 012334444444321 1122455688889999999999999999996664 455
Q ss_pred cCCCcccC
Q 031476 146 TSKGKAAK 153 (159)
Q Consensus 146 ~~~g~~~k 153 (159)
.|.|++++
T Consensus 154 ~C~G~G~~ 161 (372)
T PRK14296 154 KCFGSGAE 161 (372)
T ss_pred CCCCCccC
Confidence 55555554
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=5.9e-29 Score=206.65 Aligned_cols=137 Identities=28% Similarity=0.445 Sum_probs=103.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc---
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE--- 87 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~--- 87 (159)
..|||+||||+++||.+|||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||.++.....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~ 78 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA 78 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc
Confidence 469999999999999999999999999999999976433 5889999999999999999999999986532111
Q ss_pred -c-c--c--------chhhhHHHHHHhhcc----------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceec
Q 031476 88 -E-E--D--------EDFYGFVQEMVSMMN----------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVN 145 (159)
Q Consensus 88 -~-~--~--------~~f~~~~~~~~~~~~----------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~ 145 (159)
. . . .+|.++|..+|+... ...++.|+..++.++|+|+|.|+++.+.+.+.+ .|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~----~C~ 154 (372)
T PRK14286 79 GGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLE----SCV 154 (372)
T ss_pred CCCCCCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccc----cCC
Confidence 0 0 0 123455555654210 112445678889999999999999999997765 455
Q ss_pred cCCCcccCCC
Q 031476 146 TSKGKAAKRG 155 (159)
Q Consensus 146 ~~~g~~~k~~ 155 (159)
.|.|++.+.+
T Consensus 155 ~C~G~G~~~~ 164 (372)
T PRK14286 155 DCNGSGASKG 164 (372)
T ss_pred CCcCCCcCCC
Confidence 5555555433
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.8e-29 Score=200.86 Aligned_cols=137 Identities=30% Similarity=0.417 Sum_probs=106.3
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCccc
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE 89 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~~ 89 (159)
....||.||||+++||.+|||+|||+|+++||||+++. +.++|++|+.||+|||||++|.+||.++.+.....
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 35689999999999999999999999999999999753 78899999999999999999999999775443321
Q ss_pred --c---chhhhHHHHHHhhccccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCCCCC
Q 031476 90 --D---EDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS 157 (159)
Q Consensus 90 --~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~~~~ 157 (159)
+ ..|..||+.-.....+..+++++..++.++++|+|.|.+..+.+.++. .|..|.|.+.+++++
T Consensus 75 ~~~~g~~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~----iCs~C~GsGgksg~~ 143 (337)
T KOG0712|consen 75 GGGGGFGGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNF----ICSKCSGSGGKSGSA 143 (337)
T ss_pred CCCCCCccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCc----cCCcCCCCCCCCCCC
Confidence 1 124444430011122233467799999999999999999999997776 666666666666655
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.95 E-value=2.6e-28 Score=205.21 Aligned_cols=124 Identities=27% Similarity=0.402 Sum_probs=97.6
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc-
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE- 88 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~- 88 (159)
...|||+||||+++||.+|||+|||+||++||||+++ ..++|++|++||+||+||.+|+.||.++......
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~ 97 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG 97 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--------hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC
Confidence 4679999999999999999999999999999999963 2479999999999999999999999865432111
Q ss_pred -ccchhhhHHHHHHhhc---cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCccc
Q 031476 89 -EDEDFYGFVQEMVSMM---NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQR 141 (159)
Q Consensus 89 -~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~ 141 (159)
...+|.++|..+|+.. ...+++.++..++.++|+|+|+|+++.+.+.+.+.|.
T Consensus 98 ~~~~d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~ 154 (421)
T PTZ00037 98 EQPADASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICA 154 (421)
T ss_pred CCCcchhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeecccccc
Confidence 1223556666666531 1223456788889999999999999999997776443
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.1e-28 Score=204.48 Aligned_cols=138 Identities=27% Similarity=0.371 Sum_probs=100.0
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC----
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD---- 84 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~---- 84 (159)
+...|||+||||+++|+.+|||+|||+|+++||||+++.++ .|.++|++|++||+|||||.+|+.||.++..
T Consensus 6 ~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~ 81 (392)
T PRK14279 6 WVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP----AAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGG 81 (392)
T ss_pred hcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccc
Confidence 34579999999999999999999999999999999976443 5889999999999999999999999986421
Q ss_pred CCc--------c-c---------cchh---------------hhHHHHHHhhcc------ccCCCCCchHhHHHHHHHHh
Q 031476 85 PLE--------E-E---------DEDF---------------YGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMV 125 (159)
Q Consensus 85 ~~~--------~-~---------~~~f---------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~e~~ 125 (159)
... . . ..+| .++|+.+|+... ...++.++..++.++|+|+|
T Consensus 82 g~~~~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~ 161 (392)
T PRK14279 82 GFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAA 161 (392)
T ss_pred ccccccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHh
Confidence 000 0 0 0111 122233332100 11244567888999999999
Q ss_pred cCcceeeeecCCCcccceeccCCCcccCC
Q 031476 126 DGMSFDFNYDPTDAQRACVNTSKGKAAKR 154 (159)
Q Consensus 126 ~G~~~~~~~~~~~~~~~~c~~~~g~~~k~ 154 (159)
.|+++.+.+.+.+ .|..|.|++.+.
T Consensus 162 ~G~~~~v~~~~~~----~C~~C~G~G~~~ 186 (392)
T PRK14279 162 KGVTMPLRLTSPA----PCTTCHGSGARP 186 (392)
T ss_pred CCeEEEEeeeccc----cCCCCccccccC
Confidence 9999999997776 444555555443
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.6e-28 Score=202.72 Aligned_cols=134 Identities=27% Similarity=0.421 Sum_probs=102.1
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..+.++|++|++||++|+||.+|+.||.++......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-----~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~ 77 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-----PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF 77 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc
Confidence 4699999999999999999999999999999999752 258889999999999999999999999865432110
Q ss_pred ---cc---chhhhHHHHHHhhcc------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccC
Q 031476 89 ---ED---EDFYGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAK 153 (159)
Q Consensus 89 ---~~---~~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k 153 (159)
.. .+|.++|..+|+... ...++.|+..++.++|+|+|.|+++.+.+.+.+ .|..|.|++.+
T Consensus 78 ~~~~~~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~ 150 (371)
T PRK14287 78 GGGGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREE----TCGTCHGSGAK 150 (371)
T ss_pred CCCCCccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeec----cCCCCCCcccC
Confidence 00 124455666665211 122445678889999999999999999997765 45555555544
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.9e-28 Score=202.05 Aligned_cols=135 Identities=30% Similarity=0.450 Sum_probs=102.1
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc---
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--- 88 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~--- 88 (159)
.|||+||||+++||.+|||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|..||.++......
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~ 78 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGG 78 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCC
Confidence 69999999999999999999999999999999976443 58899999999999999999999999865322110
Q ss_pred -----cc--------chhhhHHHHHHhhcc------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCC
Q 031476 89 -----ED--------EDFYGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKG 149 (159)
Q Consensus 89 -----~~--------~~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g 149 (159)
.+ .+|.++|+.+|+... ...++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.|
T Consensus 79 ~~~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~----~C~~C~G 154 (365)
T PRK14285 79 FEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNM----LCESCLG 154 (365)
T ss_pred ccccCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecc----cCCCCCC
Confidence 00 124455555554211 122445688889999999999999999997765 4455555
Q ss_pred cccCC
Q 031476 150 KAAKR 154 (159)
Q Consensus 150 ~~~k~ 154 (159)
++.+.
T Consensus 155 ~G~~~ 159 (365)
T PRK14285 155 KKSEK 159 (365)
T ss_pred cccCC
Confidence 55443
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=3.2e-28 Score=202.78 Aligned_cols=136 Identities=31% Similarity=0.449 Sum_probs=103.0
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++||.+|||+|||+|+++||||+++. + .+.++|++|++||+||+||.+|+.||.++......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~ 77 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-P----GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGF 77 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCC
Confidence 4699999999999999999999999999999999753 2 58889999999999999999999999865322110
Q ss_pred -----c---------cchhhhHHHHHHhhc------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCC
Q 031476 89 -----E---------DEDFYGFVQEMVSMM------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSK 148 (159)
Q Consensus 89 -----~---------~~~f~~~~~~~~~~~------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~ 148 (159)
. ..+|.++|..+|+.. ...+++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~----~C~~C~ 153 (380)
T PRK14276 78 GGGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREA----TCHTCN 153 (380)
T ss_pred CCCCCCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccc----cCCCCc
Confidence 0 012445566665421 1122445677889999999999999999997765 555555
Q ss_pred CcccCCC
Q 031476 149 GKAAKRG 155 (159)
Q Consensus 149 g~~~k~~ 155 (159)
|++++.+
T Consensus 154 G~G~~~~ 160 (380)
T PRK14276 154 GSGAKPG 160 (380)
T ss_pred CcccCCC
Confidence 5555443
No 11
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.1e-27 Score=199.15 Aligned_cols=135 Identities=29% Similarity=0.464 Sum_probs=101.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++||.++||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||.++......
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~ 78 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG 78 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh----HHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC
Confidence 469999999999999999999999999999999976442 58889999999999999999999999865432110
Q ss_pred --c--------cchhhhHHHHHHhhc-------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcc
Q 031476 89 --E--------DEDFYGFVQEMVSMM-------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKA 151 (159)
Q Consensus 89 --~--------~~~f~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~ 151 (159)
. ...|.++|+.+|+.. ....++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.|++
T Consensus 79 ~~~g~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~----~C~~C~G~G 154 (373)
T PRK14301 79 GFGGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNV----TCDDCGGSG 154 (373)
T ss_pred CCCCcccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecc----cCCCCCCcc
Confidence 0 012344455554310 1112445688889999999999999999997765 445555555
Q ss_pred cC
Q 031476 152 AK 153 (159)
Q Consensus 152 ~k 153 (159)
.+
T Consensus 155 ~~ 156 (373)
T PRK14301 155 AA 156 (373)
T ss_pred cC
Confidence 44
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=5.4e-28 Score=201.26 Aligned_cols=135 Identities=27% Similarity=0.401 Sum_probs=103.3
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc---
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--- 88 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~--- 88 (159)
.|||+||||+++|+.++||+|||+|+++||||+++ + ..+.++|++|++||+||+||.+|+.||.++......
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~----~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~ 77 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-D----EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGG 77 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-c----HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCC
Confidence 69999999999999999999999999999999975 2 268899999999999999999999999865421100
Q ss_pred -c--c---chhhhHHHHHHhhcc-------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCCC
Q 031476 89 -E--D---EDFYGFVQEMVSMMN-------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 155 (159)
Q Consensus 89 -~--~---~~f~~~~~~~~~~~~-------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~~ 155 (159)
. . .+|.++|..+|+... ..+++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.|++++.+
T Consensus 78 ~~g~~~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~ 153 (378)
T PRK14278 78 GGGFGGGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAV----LCDRCHGKGTAGD 153 (378)
T ss_pred CCCCCcCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeec----cCCCCcCccCCCC
Confidence 0 0 124455666665211 122455678889999999999999999996665 5556666665544
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=4.9e-28 Score=201.41 Aligned_cols=136 Identities=35% Similarity=0.486 Sum_probs=104.1
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.+|||+|||+||++||||+++. ..+.++|++|++||+||+||.+|+.||.++......
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~ 78 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-----PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY 78 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-----hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccccc
Confidence 4699999999999999999999999999999999753 257899999999999999999999999865432110
Q ss_pred ------c---cchhhhHHHHHHhhc-----cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCC
Q 031476 89 ------E---DEDFYGFVQEMVSMM-----NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR 154 (159)
Q Consensus 89 ------~---~~~f~~~~~~~~~~~-----~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~ 154 (159)
. ..+|.++|..+|+.. ...+++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.|++++.
T Consensus 79 ~~~~~~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~ 154 (377)
T PRK14298 79 SAEDIFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAE----RCSTCSGTGAKP 154 (377)
T ss_pred CcccccccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeec----cCCCCCCCcccC
Confidence 0 012445666666421 1123456788889999999999999999996665 555666665554
Q ss_pred C
Q 031476 155 G 155 (159)
Q Consensus 155 ~ 155 (159)
+
T Consensus 155 ~ 155 (377)
T PRK14298 155 G 155 (377)
T ss_pred C
Confidence 3
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=9.9e-28 Score=200.19 Aligned_cols=135 Identities=30% Similarity=0.482 Sum_probs=101.2
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++||.+|||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||.++......
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~ 79 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK----EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGG 79 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccc
Confidence 469999999999999999999999999999999976443 58899999999999999999999999854321100
Q ss_pred --------cc----------chhhhHHHHHHhhc-c--------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCccc
Q 031476 89 --------ED----------EDFYGFVQEMVSMM-N--------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQR 141 (159)
Q Consensus 89 --------~~----------~~f~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~ 141 (159)
.+ .+|.++|.++|+.+ . ..+++.++..++.++|+|+|.|+++.+.+.+.+
T Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~--- 156 (386)
T PRK14277 80 FGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFE--- 156 (386)
T ss_pred cccCCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeec---
Confidence 00 12334455555421 1 122445688889999999999999999997665
Q ss_pred ceeccCCCcccC
Q 031476 142 ACVNTSKGKAAK 153 (159)
Q Consensus 142 ~~c~~~~g~~~k 153 (159)
.|..|.|++.+
T Consensus 157 -~C~~C~G~G~~ 167 (386)
T PRK14277 157 -KCDVCKGSGAK 167 (386)
T ss_pred -cCCCCCCCCcC
Confidence 45555555543
No 15
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=8.6e-28 Score=199.68 Aligned_cols=126 Identities=31% Similarity=0.489 Sum_probs=96.0
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++||.++||+|||+|+++||||+++.++ .+.++|++|++||++|+||.+|+.||.+.......
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~ 78 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK----EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGG 78 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcH----HHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCC
Confidence 469999999999999999999999999999999976433 58899999999999999999999999865332110
Q ss_pred -----cc-ch----hhhHHHHHHhhc-----cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcc
Q 031476 89 -----ED-ED----FYGFVQEMVSMM-----NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQ 140 (159)
Q Consensus 89 -----~~-~~----f~~~~~~~~~~~-----~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~ 140 (159)
.. .+ |.++|+.+|+.. ...+++.++..++.++|+|+|.|+++.+.+.+.+.|
T Consensus 79 ~~~~~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C 145 (371)
T PRK10767 79 GGGGFGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTC 145 (371)
T ss_pred CCCCCCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccC
Confidence 00 11 333444443310 112345568888999999999999999999776543
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=8.9e-28 Score=200.12 Aligned_cols=136 Identities=32% Similarity=0.460 Sum_probs=102.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.++||+|||+|+++||||+++.++ .++++|++|++||+||+||.+|+.||.++......
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~ 78 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK----EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG 78 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC
Confidence 369999999999999999999999999999999976432 58899999999999999999999999865432110
Q ss_pred -------cc------chhhhHHHHHHhhc--------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccC
Q 031476 89 -------ED------EDFYGFVQEMVSMM--------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTS 147 (159)
Q Consensus 89 -------~~------~~f~~~~~~~~~~~--------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~ 147 (159)
.. .+|.++|..+|+.. ...+++.++..++.++|+|+|.|+++.+.+.+.+ .|..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C 154 (380)
T PRK14297 79 GFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNE----NCETC 154 (380)
T ss_pred CCCCCCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeec----cCCCc
Confidence 00 12345556555421 0112445688889999999999999999997665 45555
Q ss_pred CCcccCC
Q 031476 148 KGKAAKR 154 (159)
Q Consensus 148 ~g~~~k~ 154 (159)
.|++.+.
T Consensus 155 ~G~G~~~ 161 (380)
T PRK14297 155 NGTGAKP 161 (380)
T ss_pred ccccccC
Confidence 5555443
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.1e-27 Score=199.35 Aligned_cols=135 Identities=30% Similarity=0.418 Sum_probs=102.2
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.++||+|||+|+++||||+++. + .+.++|++|++||+||+||.+|+.||.++......
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~ 77 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-E----GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGF 77 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCc
Confidence 3699999999999999999999999999999999753 2 58899999999999999999999999865322110
Q ss_pred -----c------cchhhhHHHHHHhhcc------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcc
Q 031476 89 -----E------DEDFYGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKA 151 (159)
Q Consensus 89 -----~------~~~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~ 151 (159)
. ..+|.++|..+|+... ..+++.++..++.++|+|+|+|+++.+.+.+.+ .|..|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G 153 (376)
T PRK14280 78 GGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEE----TCDTCHGSG 153 (376)
T ss_pred CCCCCCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeec----cCCCCCCcc
Confidence 0 0024455666654211 112445678889999999999999999997765 455555555
Q ss_pred cCC
Q 031476 152 AKR 154 (159)
Q Consensus 152 ~k~ 154 (159)
.+.
T Consensus 154 ~~~ 156 (376)
T PRK14280 154 AKP 156 (376)
T ss_pred cCC
Confidence 443
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.3e-27 Score=198.34 Aligned_cols=135 Identities=32% Similarity=0.489 Sum_probs=101.0
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.+|||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||.++......
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~ 78 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK----EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTG 78 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCC
Confidence 479999999999999999999999999999999986443 58889999999999999999999999865432110
Q ss_pred ----cc-----chhhhHHHHHHh-h-cc------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcc
Q 031476 89 ----ED-----EDFYGFVQEMVS-M-MN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKA 151 (159)
Q Consensus 89 ----~~-----~~f~~~~~~~~~-~-~~------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~ 151 (159)
.+ ..|.++|..+|+ . .. ...++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.|++
T Consensus 79 ~~~~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~----~C~~C~G~G 154 (366)
T PRK14294 79 FSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLE----TCEECHGSG 154 (366)
T ss_pred CCCcCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecc----cCCCCCCcc
Confidence 00 123445555554 1 10 112345677889999999999999999997765 344444444
Q ss_pred cC
Q 031476 152 AK 153 (159)
Q Consensus 152 ~k 153 (159)
.+
T Consensus 155 ~~ 156 (366)
T PRK14294 155 CE 156 (366)
T ss_pred cc
Confidence 43
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.4e-27 Score=198.32 Aligned_cols=137 Identities=30% Similarity=0.535 Sum_probs=100.8
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc---
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE--- 87 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~--- 87 (159)
..|||+||||+++||.+|||+|||+|+++||||+++.+ ...+.++|++|++||+||+||.+|+.||.+......
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~ 79 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPY 79 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc---hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccc
Confidence 46999999999999999999999999999999997543 125889999999999999999999999986543211
Q ss_pred ---cccch--------hh-----hHHHHHHhhc-------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCccccee
Q 031476 88 ---EEDED--------FY-----GFVQEMVSMM-------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACV 144 (159)
Q Consensus 88 ---~~~~~--------f~-----~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c 144 (159)
....+ |. ++|..+|+.. ....++.++..++.++|+|+|.|+++.+.+.+.+ .|
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~----~C 155 (369)
T PRK14282 80 QETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYE----TC 155 (369)
T ss_pred ccCCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecc----cC
Confidence 00001 11 3344444321 0112345677889999999999999999997665 45
Q ss_pred ccCCCcccCC
Q 031476 145 NTSKGKAAKR 154 (159)
Q Consensus 145 ~~~~g~~~k~ 154 (159)
..|.|++++.
T Consensus 156 ~~C~G~G~~~ 165 (369)
T PRK14282 156 PHCGGTGVEP 165 (369)
T ss_pred CCCCccCCCC
Confidence 5555555443
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.7e-27 Score=198.93 Aligned_cols=137 Identities=31% Similarity=0.481 Sum_probs=99.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc----cCCCCC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA----GLYDPL 86 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~----~~~~~~ 86 (159)
..|||+||||+++|+.+|||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||. ++....
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA----KAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----hHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999976443 588999999999999999999999997 432211
Q ss_pred c-----c--cc-----ch-----------------hhhHHHHHHhhc---cccCCCCCchHhHHHHHHHHhcCcceeeee
Q 031476 87 E-----E--ED-----ED-----------------FYGFVQEMVSMM---NNVKDEGDSFEDLQRMFVEMVDGMSFDFNY 134 (159)
Q Consensus 87 ~-----~--~~-----~~-----------------f~~~~~~~~~~~---~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~ 134 (159)
. . .+ .+ |.++|+.+|+.. ...+++.++..++.++|+|+|.|+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~ 163 (389)
T PRK14295 84 RPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRL 163 (389)
T ss_pred ccCCCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEe
Confidence 0 0 00 00 112222222210 112345567788999999999999999999
Q ss_pred cCCCcccceeccCCCcccCCC
Q 031476 135 DPTDAQRACVNTSKGKAAKRG 155 (159)
Q Consensus 135 ~~~~~~~~~c~~~~g~~~k~~ 155 (159)
.+.+ .|..|.|++.+.+
T Consensus 164 ~r~~----~C~~C~G~G~~~~ 180 (389)
T PRK14295 164 TSQA----PCPACSGTGAKNG 180 (389)
T ss_pred eccc----cCCCCcccccCCC
Confidence 7665 4555555555443
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=3.6e-27 Score=197.13 Aligned_cols=135 Identities=30% Similarity=0.488 Sum_probs=99.0
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc----
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE---- 87 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~---- 87 (159)
+|||+||||+++||+++||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||.++.....
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~ 76 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA----EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAG 76 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccC
Confidence 48999999999999999999999999999999986443 5889999999999999999999999986532110
Q ss_pred c-ccch------------------h---hhHHHHHHhhcc----------ccCCCCCchHhHHHHHHHHhcCcceeeeec
Q 031476 88 E-EDED------------------F---YGFVQEMVSMMN----------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYD 135 (159)
Q Consensus 88 ~-~~~~------------------f---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~ 135 (159)
. ...+ | .++|..+|+... ...++.++..++.++|+|+|.|+++.+.+.
T Consensus 77 ~~~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~ 156 (391)
T PRK14284 77 GFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVS 156 (391)
T ss_pred CcCCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEe
Confidence 0 0000 1 123334443211 112345677889999999999999999997
Q ss_pred CCCcccceeccCCCcccCC
Q 031476 136 PTDAQRACVNTSKGKAAKR 154 (159)
Q Consensus 136 ~~~~~~~~c~~~~g~~~k~ 154 (159)
+.+ .|..|.|++++.
T Consensus 157 r~~----~C~~C~G~G~~~ 171 (391)
T PRK14284 157 GYK----SCDACSGSGANS 171 (391)
T ss_pred eec----cCCCCcccccCC
Confidence 665 444555555443
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=8.4e-27 Score=194.39 Aligned_cols=134 Identities=26% Similarity=0.465 Sum_probs=98.9
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.++||+|||+|+++||||+++. + .+.++|++|++||+||+||.+|+.||.++......
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~ 76 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-P----EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSG 76 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-c----cHHHHHHHHHHHHHHhcCHHHHHHHhhhccccccccc
Confidence 3699999999999999999999999999999999763 2 58899999999999999999999999865432110
Q ss_pred ------------ccchhhhHHHHHHhh------ccc-------------cCCCCCchHhHHHHHHHHhcCcceeeeecCC
Q 031476 89 ------------EDEDFYGFVQEMVSM------MNN-------------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPT 137 (159)
Q Consensus 89 ------------~~~~f~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~ 137 (159)
...+|.+++.++|+. +.. ..++.++..++.++|+|+|.|+++.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~ 156 (382)
T PRK14291 77 QQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRY 156 (382)
T ss_pred CccccccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeee
Confidence 001233444444311 110 1134467778899999999999999999766
Q ss_pred CcccceeccCCCcccC
Q 031476 138 DAQRACVNTSKGKAAK 153 (159)
Q Consensus 138 ~~~~~~c~~~~g~~~k 153 (159)
+ .|..|.|++.+
T Consensus 157 ~----~C~~C~G~G~~ 168 (382)
T PRK14291 157 V----PCEACGGTGYD 168 (382)
T ss_pred c----cCCCCccccCC
Confidence 5 44455555544
No 23
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.93 E-value=1.9e-26 Score=190.55 Aligned_cols=133 Identities=36% Similarity=0.501 Sum_probs=100.7
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc----
Q 031476 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---- 88 (159)
Q Consensus 13 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~---- 88 (159)
|||+||||+++|+.++||+|||+|+++||||+++ . ..+.++|++|++||++|+||.+|+.||.+.......
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~----~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~ 75 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-D----KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGG 75 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-C----ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcC
Confidence 7999999999999999999999999999999975 2 257889999999999999999999999855332110
Q ss_pred -c----------cchhhhHHHHHHhhc--------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCC
Q 031476 89 -E----------DEDFYGFVQEMVSMM--------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKG 149 (159)
Q Consensus 89 -~----------~~~f~~~~~~~~~~~--------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g 149 (159)
. ..+|.++|..+|+.. ....++.++..++.++|+|+|.|+++.+.+.+.+ .|..|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G 151 (354)
T TIGR02349 76 GGGGFNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKE----SCETCHG 151 (354)
T ss_pred CCCCcCCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCC----cCCCCCC
Confidence 0 012334555555421 1122445677889999999999999999997665 5555555
Q ss_pred cccCC
Q 031476 150 KAAKR 154 (159)
Q Consensus 150 ~~~k~ 154 (159)
++.+.
T Consensus 152 ~G~~~ 156 (354)
T TIGR02349 152 TGAKP 156 (354)
T ss_pred CCCCC
Confidence 55543
No 24
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=2.7e-26 Score=192.16 Aligned_cols=134 Identities=28% Similarity=0.443 Sum_probs=98.7
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc----
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE---- 87 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~---- 87 (159)
.|||+||||+++|+.++||+|||+|+++||||+++.++ .+.++|++|++||++|+||.+|+.||.++.....
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~ 78 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK----EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAA 78 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccc
Confidence 59999999999999999999999999999999976432 5789999999999999999999999986542211
Q ss_pred --c------ccchhhhHHH---HHHhhc---------------c-c--------cCCCCCchHhHHHHHHHHhcCcceee
Q 031476 88 --E------EDEDFYGFVQ---EMVSMM---------------N-N--------VKDEGDSFEDLQRMFVEMVDGMSFDF 132 (159)
Q Consensus 88 --~------~~~~f~~~~~---~~~~~~---------------~-~--------~~~~~~~~~~~~~~f~e~~~G~~~~~ 132 (159)
. ...+|.+++. .+|+.. . . ..++.|+..++.++|+|+|.|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i 158 (397)
T PRK14281 79 SGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTL 158 (397)
T ss_pred cCCCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEE
Confidence 0 0112334432 444310 0 0 01245677788999999999999999
Q ss_pred eecCCCcccceeccCCCcccC
Q 031476 133 NYDPTDAQRACVNTSKGKAAK 153 (159)
Q Consensus 133 ~~~~~~~~~~~c~~~~g~~~k 153 (159)
.+.+.+ .|..|.|++++
T Consensus 159 ~~~r~~----~C~~C~G~G~~ 175 (397)
T PRK14281 159 KIKKQV----PCKECNGTGSK 175 (397)
T ss_pred EEEeee----cCCCCCCcccC
Confidence 997665 44444444443
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=3.7e-26 Score=189.56 Aligned_cols=126 Identities=30% Similarity=0.456 Sum_probs=96.2
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCccc--
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE-- 89 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~~-- 89 (159)
.|||+||||+++|+.+|||+|||+|++++|||+++.++ ..+.++|++|++||++|+||.+|+.||.++.......
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~ 79 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNK---AEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGS 79 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch---hHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCC
Confidence 69999999999999999999999999999999975432 2588999999999999999999999998654321100
Q ss_pred ---------cchhhhHHHHHHhhc-c-----c-----c--CCCCCchHhHHHHHHHHhcCcceeeeecCCCcc
Q 031476 90 ---------DEDFYGFVQEMVSMM-N-----N-----V--KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQ 140 (159)
Q Consensus 90 ---------~~~f~~~~~~~~~~~-~-----~-----~--~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~ 140 (159)
..+|.++|..+|+.. . . . +++.++..++.++|+|+|.|+++.+.+.+.+.|
T Consensus 80 ~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C 152 (365)
T PRK14290 80 NFNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMC 152 (365)
T ss_pred CccccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccC
Confidence 012344555555421 0 0 0 114567788999999999999999999776544
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=2.6e-26 Score=191.21 Aligned_cols=134 Identities=31% Similarity=0.538 Sum_probs=97.5
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-- 88 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~-- 88 (159)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..+.++|++|++||++|+||.+|+.||.++......
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~ 78 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-----EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFS 78 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccc
Confidence 5799999999999999999999999999999999753 258999999999999999999999999855322110
Q ss_pred --------c-cchhhhH---HHHHHhhc--c-----ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCC
Q 031476 89 --------E-DEDFYGF---VQEMVSMM--N-----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKG 149 (159)
Q Consensus 89 --------~-~~~f~~~---~~~~~~~~--~-----~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g 149 (159)
. .+.|..+ ++++|+.+ . ..+++.++..++.++|+|+|.|+.+.+.+.+.+ .|..|.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~----~C~~C~G 154 (378)
T PRK14283 79 QEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTK----KCPVCNG 154 (378)
T ss_pred ccccccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeec----cCCCCCc
Confidence 0 0001111 12223222 1 123445688889999999999999999996665 4444444
Q ss_pred cccC
Q 031476 150 KAAK 153 (159)
Q Consensus 150 ~~~k 153 (159)
++.+
T Consensus 155 ~G~~ 158 (378)
T PRK14283 155 SRAE 158 (378)
T ss_pred cccC
Confidence 4443
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=8.6e-26 Score=187.71 Aligned_cols=133 Identities=29% Similarity=0.434 Sum_probs=100.2
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc--c
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--E 89 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~--~ 89 (159)
+|||+||||+++|+.++||+|||+|++++|||+++. ..+.++|++|++||++|+||.+|+.||.++...... .
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-----~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~ 76 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-----KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPG 76 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccC
Confidence 589999999999999999999999999999999753 258899999999999999999999999866432100 0
Q ss_pred -----c--chhhhHHHHHHhhcc--------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccC
Q 031476 90 -----D--EDFYGFVQEMVSMMN--------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAK 153 (159)
Q Consensus 90 -----~--~~f~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k 153 (159)
. .++.++|..+|+... ...++.++..++.++|+|+++|+++.+.+.+.+ .|..|+|++.+
T Consensus 77 ~~~~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~----~C~~C~G~G~~ 151 (371)
T PRK14292 77 GDPFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLT----ECEHCHGSRTE 151 (371)
T ss_pred CcccCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeee----cCCCCcccccC
Confidence 0 112244555554210 112345677888999999999999999996665 45555555554
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=1.2e-25 Score=186.88 Aligned_cols=133 Identities=29% Similarity=0.466 Sum_probs=98.3
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc----
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE---- 87 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~---- 87 (159)
.|||+||||+++||.+|||+|||+|+++||||+++. + .+.++|++|++||++|+|+.+|+.||.++.....
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~ 77 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-K----DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQS 77 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----CHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccc
Confidence 699999999999999999999999999999999752 2 4788999999999999999999999986532111
Q ss_pred ----c--c--cchhhhHHHHHHhhc-c-----cc----CCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCC
Q 031476 88 ----E--E--DEDFYGFVQEMVSMM-N-----NV----KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKG 149 (159)
Q Consensus 88 ----~--~--~~~f~~~~~~~~~~~-~-----~~----~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g 149 (159)
. . ...|.+.|.++|+.+ . .. .++.++..++.++|+|++.|+++.+.+.+.+ .|..|.|
T Consensus 78 ~~~~g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~----~C~~C~G 153 (372)
T PRK14300 78 RGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEV----KCDTCHG 153 (372)
T ss_pred cCCCCCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeecc----ccCCCCC
Confidence 0 0 011223344444321 1 01 2445678889999999999999999996665 4555555
Q ss_pred cccC
Q 031476 150 KAAK 153 (159)
Q Consensus 150 ~~~k 153 (159)
++.+
T Consensus 154 ~g~~ 157 (372)
T PRK14300 154 SGSE 157 (372)
T ss_pred cccC
Confidence 5543
No 29
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-26 Score=183.20 Aligned_cols=125 Identities=30% Similarity=0.505 Sum_probs=93.4
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcc-
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE- 88 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~- 88 (159)
..+|||+||||+++|+..|||+|||+||+++|||+|+++| .|.+.|++|+.||+|||||++|+.||..+......
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp----~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP----NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 4689999999999999999999999999999999999887 69999999999999999999999999866332221
Q ss_pred ----c-----cchhhhHHHHHHhh------ccccCCCCCchHhHHHHHHHHhcCcceeeeecCCC
Q 031476 89 ----E-----DEDFYGFVQEMVSM------MNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTD 138 (159)
Q Consensus 89 ----~-----~~~f~~~~~~~~~~------~~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~ 138 (159)
+ -+.|..+++++.-. ....+.+.++...+....+++|.|...+....+.+
T Consensus 90 ~~~~~~g~~~~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v 154 (336)
T KOG0713|consen 90 NKDGEGGGGGNDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGV 154 (336)
T ss_pred ccccccCCcccchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCc
Confidence 1 13344444433111 11233344466678888888888877666554443
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=1.2e-25 Score=187.61 Aligned_cols=134 Identities=27% Similarity=0.406 Sum_probs=97.6
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc---
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE--- 87 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~--- 87 (159)
..|||+||||+++|+.+|||+|||+|+++||||+++.++ .+.++|++|++||++|+||.+|+.||.+......
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~ 79 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK----EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAA 79 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCC
Confidence 579999999999999999999999999999999986543 5889999999999999999999999986532111
Q ss_pred ---c-c--cchhhhHH---HHHHhhc----------c------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccc
Q 031476 88 ---E-E--DEDFYGFV---QEMVSMM----------N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRA 142 (159)
Q Consensus 88 ---~-~--~~~f~~~~---~~~~~~~----------~------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~ 142 (159)
. . ..++.++| +++|+.+ . ...++.++...+.++|+|+|+|+++.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~---- 155 (386)
T PRK14289 80 GGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYV---- 155 (386)
T ss_pred CCCCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeec----
Confidence 0 0 01122222 2223321 0 012344677788999999999999999997665
Q ss_pred eeccCCCccc
Q 031476 143 CVNTSKGKAA 152 (159)
Q Consensus 143 ~c~~~~g~~~ 152 (159)
.|..|.|++.
T Consensus 156 ~C~~C~G~G~ 165 (386)
T PRK14289 156 PCSHCHGTGA 165 (386)
T ss_pred ccCCCCCCCC
Confidence 3444444443
No 31
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=1.4e-25 Score=186.59 Aligned_cols=124 Identities=30% Similarity=0.436 Sum_probs=95.2
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCccc--
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE-- 89 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~~-- 89 (159)
.|||+||||+++|+.++||+|||+|++++|||+++. + .+.++|++|++||+||+||.+|+.||.++.......
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~ 77 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-P----GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAG 77 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-c----CHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCC
Confidence 699999999999999999999999999999999753 2 578899999999999999999999998654321100
Q ss_pred ------cchhhhHHHHHHhhcc------------ccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcc
Q 031476 90 ------DEDFYGFVQEMVSMMN------------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQ 140 (159)
Q Consensus 90 ------~~~f~~~~~~~~~~~~------------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~ 140 (159)
...|.++|..+|+.+. ...++.++..++.++|+|+|.|+++.+.+.+.+.|
T Consensus 78 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C 146 (374)
T PRK14293 78 FPDMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETC 146 (374)
T ss_pred cCCcccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccC
Confidence 0124455555554210 01233457778889999999999999999776544
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.7e-24 Score=173.06 Aligned_cols=138 Identities=33% Similarity=0.519 Sum_probs=106.3
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCcccc
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEED 90 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~~~ 90 (159)
..|||+||||+++|+..|||.||++|++++|||.+... .+.++|++|.+||+||+|+++|+.||..+........
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~ 116 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-----EASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFG 116 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcccccc
Confidence 34999999999999999999999999999999998754 6999999999999999999999999997765311111
Q ss_pred chhhhHHHHHHhh-ccccCCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCCCCC
Q 031476 91 EDFYGFVQEMVSM-MNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS 157 (159)
Q Consensus 91 ~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~~~~ 157 (159)
....+.+..++.. +...-...+...++...|+|+..|+.+.+.+.... .|.+|.|.+.+.+.+
T Consensus 117 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~----~~~t~~~~~~~~~~~ 180 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLS----DCETCFGSGAEEGAK 180 (288)
T ss_pred CCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeec----ccccccCcCcccccc
Confidence 1233344444444 33333334455558899999999998888885553 788888888776654
No 33
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1e-23 Score=170.29 Aligned_cols=121 Identities=34% Similarity=0.473 Sum_probs=92.8
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCC----
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL---- 86 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~---- 86 (159)
..|||+||||+++||.+|||+|||+|++++|||+++. + .+.++|++|++||++|+||.+|+.||.++....
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~ 77 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-P----GAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGW 77 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccc
Confidence 4699999999999999999999999999999999752 2 588999999999999999999999998553210
Q ss_pred ------cc--c------cchhhhHHHHHHhhcc---c-----------cCCCCCchHhHHHHHHHHhcCcceeeeecC
Q 031476 87 ------EE--E------DEDFYGFVQEMVSMMN---N-----------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDP 136 (159)
Q Consensus 87 ------~~--~------~~~f~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~ 136 (159)
.. . ..+|.++|..+|+... . .+++.++..++.++|+|++.|+++.++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~g 155 (291)
T PRK14299 78 QGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAG 155 (291)
T ss_pred cCCCCCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeCC
Confidence 00 0 0134455666664210 0 123345777899999999999999987753
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.88 E-value=8.9e-23 Score=165.80 Aligned_cols=122 Identities=29% Similarity=0.502 Sum_probs=93.5
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC----CC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD----PL 86 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~----~~ 86 (159)
..|||+||||+++|+.++||+|||+|++++|||+++. + .+.++|++|++||++|+||.+|+.||..... ..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~ 77 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-P----DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQF 77 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccc
Confidence 3699999999999999999999999999999999642 1 5889999999999999999999999975321 00
Q ss_pred -------c---cccchhhhHHHHHHhhcc------ccCCCCCchHhHHHHHHHHhcCcceeeeecCC
Q 031476 87 -------E---EEDEDFYGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPT 137 (159)
Q Consensus 87 -------~---~~~~~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~ 137 (159)
. ....+|.+.|..+|+... ..+++.++..++.++|+|++.|+.+.+.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~ 144 (306)
T PRK10266 78 NRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP 144 (306)
T ss_pred ccccccCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc
Confidence 0 011235555565554311 11234567778999999999999999888655
No 35
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.83 E-value=7.8e-21 Score=120.48 Aligned_cols=64 Identities=42% Similarity=0.777 Sum_probs=59.7
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 13 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
|||+||||+++++.++||++|+++++++|||++.... ..+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~---~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE---AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH---HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh---hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999976553 458899999999999999999999998
No 36
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.1e-20 Score=142.83 Aligned_cols=90 Identities=38% Similarity=0.581 Sum_probs=73.0
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCccc
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE 89 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~~~ 89 (159)
...|+|+||||.++|+..+|++||++|++++|||+++ .+...++.+.|+.|+.||+||+|.++|+.||..+.-. +..
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~--eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id-d~~ 88 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH--EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID-DES 88 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch--hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC-Ccc
Confidence 3459999999999999999999999999999999974 3444579999999999999999999999999977554 334
Q ss_pred cchhhhHHHHHHhh
Q 031476 90 DEDFYGFVQEMVSM 103 (159)
Q Consensus 90 ~~~f~~~~~~~~~~ 103 (159)
++-+.+|. ++|..
T Consensus 89 ~d~~~~~~-e~~~~ 101 (264)
T KOG0719|consen 89 GDIDEDWL-EFWRA 101 (264)
T ss_pred chhhhHHH-HHHHH
Confidence 44444443 34443
No 37
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-20 Score=154.85 Aligned_cols=70 Identities=41% Similarity=0.710 Sum_probs=63.8
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhccc
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 81 (159)
...+.||+||||..+|++.+||++||+|||+||||+++... .+++++|+.|+.||+|||||..|..||.+
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~i---eeat~~F~~i~aAYeVLSdp~eR~wyd~h 74 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRI---EEATQQFQLIQAAYEVLSDPQERAWYDSH 74 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccH---HHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence 34578999999999999999999999999999999965543 58999999999999999999999999973
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.1e-20 Score=145.63 Aligned_cols=68 Identities=46% Similarity=0.814 Sum_probs=64.4
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
.+|+|+||||+++|+.++||++||+|++++|||+++.+| ++.++|++||+||++|+||.+|..||.++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P----~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g 97 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP----EATDKFKEINTAYAILSDPTKRNVYDEYG 97 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc----hhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence 568999999999999999999999999999999998887 68999999999999999999999999864
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.2e-20 Score=153.71 Aligned_cols=77 Identities=39% Similarity=0.649 Sum_probs=69.0
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCCc
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 87 (159)
.+.+||.+|+|+++||.+|||+|||++++.||||++. +|+..+.|++.|+.|..||+|||||.+|.+||..+..+..
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~-dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC-ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4568999999999999999999999999999999986 4555567999999999999999999999999997765544
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-19 Score=144.27 Aligned_cols=70 Identities=43% Similarity=0.768 Sum_probs=66.1
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
..|||.||||+.+++..+|++|||.+++++|||+++.+| .|.+.|+.+.+||+||+|+..|..||..+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP----QAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 679999999999999999999999999999999999888 5999999999999999999999999986643
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.75 E-value=2.7e-18 Score=107.22 Aligned_cols=59 Identities=49% Similarity=0.896 Sum_probs=53.7
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccch
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~ 73 (159)
+|||+||||+++++.++||++|+++++++|||++... ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~---~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD---KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998643 2468899999999999999985
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.74 E-value=3.6e-18 Score=152.68 Aligned_cols=71 Identities=35% Similarity=0.615 Sum_probs=64.4
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
...+||+||||+++||..+||+|||+||+++|||+++.+ .+.++|+.|++||+|||||.+|+.||.++..+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-----~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-----EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 457999999999999999999999999999999997642 47789999999999999999999999977554
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.73 E-value=9.3e-18 Score=102.92 Aligned_cols=55 Identities=53% Similarity=0.911 Sum_probs=50.8
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhcc
Q 031476 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71 (159)
Q Consensus 13 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd 71 (159)
|||+||||+++++.++||++|++|++++|||+.... ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999997643 3689999999999999986
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.69 E-value=5.3e-17 Score=119.30 Aligned_cols=67 Identities=19% Similarity=0.382 Sum_probs=59.7
Q ss_pred CCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCC
Q 031476 12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (159)
Q Consensus 12 ~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~ 86 (159)
..+|+||||+++| |.++||+|||++++++|||+++ ..++|++|++||++|+++..|..||..+....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--------hhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 3589999999999 9999999999999999999953 34689999999999999999999999775543
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.9e-17 Score=122.55 Aligned_cols=69 Identities=46% Similarity=0.863 Sum_probs=63.6
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
....+||+||||+++|+.++|++|||++++++|||+++.++. .+.+.|..|++||++|+|+..|..||.
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~---~a~~~f~~i~~Ay~vLsd~~~r~~yd~ 71 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK---VAEEKFKEINEAYEILSDPERRAEYDK 71 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh---HHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence 346799999999999999999999999999999999876642 488999999999999999999999997
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.67 E-value=1.1e-16 Score=120.07 Aligned_cols=71 Identities=25% Similarity=0.402 Sum_probs=61.1
Q ss_pred CCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCC-chhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 12 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
+|||+||||++. ++..+|+++||++++++|||++...+. .+..+.+.|..||+||++|+||.+|..|+..+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 489999999985 788999999999999999999865442 22247789999999999999999999998644
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.66 E-value=1.6e-16 Score=139.46 Aligned_cols=69 Identities=45% Similarity=0.705 Sum_probs=62.8
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
.|||+||||+++|+.++||+|||+|++++|||+++. + .+..+|+.|++||++|+||.+|..||.++...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~----eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-P----DAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 589999999999999999999999999999999764 2 57789999999999999999999999876543
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-16 Score=121.31 Aligned_cols=71 Identities=30% Similarity=0.524 Sum_probs=64.1
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
...|+|+||||++++|..|||+|||+|++++|||+++.. .+.++.|..|++||+.|+|+..|..|..++.+
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 456999999999999999999999999999999998653 26788999999999999999999999987644
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=2.1e-16 Score=118.10 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=60.1
Q ss_pred CCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 12 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
.|||+||||++. ++..+|+++||++++++|||++.. ......+.+.+..||+||+||+||.+|+.|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999986 789999999999999999999853 22223356678999999999999999999987553
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.64 E-value=4.5e-16 Score=116.91 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=64.0
Q ss_pred CCcCCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCC-chhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 9 GGSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
++..|||++|||++. .+..+|+++||++++++|||++...+. .+..+.+.+..||+||+||+||.+|+.|+..+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 357899999999986 678999999999999999999876442 223477889999999999999999999997553
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.63 E-value=2.3e-16 Score=128.40 Aligned_cols=73 Identities=42% Similarity=0.702 Sum_probs=66.5
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
.+.+|||+||||.++|+..||-+|||+++.+||||-+. +.++.+.|+++|..|..|-+||+||++|+.||.+-
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq-dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ-DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc-CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 35789999999999999999999999999999999986 44445679999999999999999999999999865
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.62 E-value=8.9e-16 Score=115.66 Aligned_cols=73 Identities=25% Similarity=0.294 Sum_probs=61.3
Q ss_pred CcCCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCc-hhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 10 GSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGV-AGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~-~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
...|||+||||++. ++..+|+++||+|++++|||++...+.. +..+.+.+..||+||++|+||.+|..|...+
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 34799999999985 6899999999999999999998754422 2235677899999999999999999999644
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.4e-16 Score=131.24 Aligned_cols=69 Identities=36% Similarity=0.555 Sum_probs=64.4
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
.+|+|.+|||+++++.++||+.||++|.+.||||+..+ .|.+.|+.|+.||++|+|+.+|..||..+..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-----~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-----RAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-----hHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 68999999999999999999999999999999998732 7999999999999999999999999987644
No 54
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.7e-16 Score=121.53 Aligned_cols=100 Identities=27% Similarity=0.348 Sum_probs=81.9
Q ss_pred CCCCcCCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC-
Q 031476 7 SNGGSLSYYAILGIRK---DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL- 82 (159)
Q Consensus 7 ~~~~~~d~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~- 82 (159)
-+|+..|+|.+|||+. .+++.+|.+++++.+.+||||+....- .......|..|+.||+||+|+.+|..||+..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 4799999999999974 789999999999999999999983311 1246789999999999999999999999854
Q ss_pred ----CCCCccccchhhhHHHHHHhhccccC
Q 031476 83 ----YDPLEEEDEDFYGFVQEMVSMMNNVK 108 (159)
Q Consensus 83 ----~~~~~~~~~~f~~~~~~~~~~~~~~~ 108 (159)
.+|.....+.|++.++++|....+++
T Consensus 116 ~advppp~~~t~~~Ffe~w~pvFe~earFS 145 (379)
T COG5269 116 DADVPPPRIYTPDEFFEVWEPVFEREARFS 145 (379)
T ss_pred ccCCCCccCCCchhHHHHHHHHHHhhhhcc
Confidence 34455567899999999987655443
No 55
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.52 E-value=1.7e-14 Score=101.26 Aligned_cols=60 Identities=28% Similarity=0.317 Sum_probs=51.9
Q ss_pred CCCCCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhc
Q 031476 3 GGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70 (159)
Q Consensus 3 ~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Ls 70 (159)
+|....+...++|+||||++++|.++||++||+|++++|||+. .+...|++|++||++|.
T Consensus 56 ~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg--------Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 56 KGFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG--------GSTYIASKVNEAKDLLL 115 (116)
T ss_pred ccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHHh
Confidence 4555666678999999999999999999999999999999983 23457899999999995
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=9.8e-15 Score=114.03 Aligned_cols=73 Identities=38% Similarity=0.659 Sum_probs=66.0
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
-++..|.|+||||++.++..+|.+|||+|++++|||++.+. ++.+.|..|..||++|.|.+.|..||-.+..|
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-----e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-----ESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-----hhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 56788999999999999999999999999999999998754 35689999999999999999999999866444
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.50 E-value=3e-14 Score=113.86 Aligned_cols=62 Identities=31% Similarity=0.494 Sum_probs=54.2
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCCchhHHHHHHHHHHHHHhhhcc
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVLSD 71 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~~a~~~f~~i~~Ay~~Lsd 71 (159)
...++|+||||++++|.++||++||+|++++|||++.. +++....++++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44699999999999999999999999999999999753 333345689999999999999975
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.1e-14 Score=117.84 Aligned_cols=71 Identities=42% Similarity=0.734 Sum_probs=65.3
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
++..|||+||||..+++..+||+|||++++.+|||++..+ +.+++.+|++|-+||.+|+||.+|..||.+.
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags---q~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS---QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch---hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 4567999999999999999999999999999999997665 5589999999999999999999999999854
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.45 E-value=1.4e-13 Score=103.44 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCC-CchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 12 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
.|||++|||++. .+...+++.|++|.+++|||++...+ .++..+.+....||+||.+|.||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999885 89999999999999999999987644 2233477889999999999999999999976443
No 60
>PHA02624 large T antigen; Provisional
Probab=99.40 E-value=5e-13 Score=116.13 Aligned_cols=84 Identities=17% Similarity=0.283 Sum_probs=65.4
Q ss_pred cCCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhh--cccC-CCC
Q 031476 11 SLSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY--DAGL-YDP 85 (159)
Q Consensus 11 ~~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Y--D~~~-~~~ 85 (159)
..++|+||||+++| +.++||+|||++++++|||+. .+.+.|++|++||++|+|+.+|..| |..- ...
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg--------Gdeekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v 81 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG--------GDEEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEI 81 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--------CcHHHHHHHHHHHHHHhcHHHhhhcccccccccCC
Confidence 45799999999999 999999999999999999994 2457899999999999999999998 4321 011
Q ss_pred CccccchhhhHHHHHHh
Q 031476 86 LEEEDEDFYGFVQEMVS 102 (159)
Q Consensus 86 ~~~~~~~f~~~~~~~~~ 102 (159)
...+...|..|...++.
T Consensus 82 ~~~~~~~w~~ww~~f~~ 98 (647)
T PHA02624 82 PTYGTPEWEQWWEEFNE 98 (647)
T ss_pred CCCccccHHHHHHHhhh
Confidence 12244556666665543
No 61
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.7e-13 Score=107.55 Aligned_cols=70 Identities=47% Similarity=0.750 Sum_probs=61.4
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
..|||+||+|.+.|+.++|++||+++++++|||+++.+ ...+..+|.+|.+||++|+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~---~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP---KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc---hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 36899999999999999999999999999999996543 22455589999999999999999999998764
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.4e-13 Score=100.99 Aligned_cols=72 Identities=26% Similarity=0.448 Sum_probs=64.2
Q ss_pred CCCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 5 GGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 5 ~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
-||++.++|+|+||.|.|..+.++||+.||+|++..|||+++++. +.|...|--|.+||..|.|+..|...+
T Consensus 46 pgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~---~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 46 PGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA---ERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred CCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH---HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 367889999999999999999999999999999999999977653 479999999999999999998665433
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.29 E-value=2.8e-12 Score=107.17 Aligned_cols=74 Identities=32% Similarity=0.544 Sum_probs=65.6
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK-NPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
...|+|+||||+.+++..+||++||+|+.++||||.+. -++.+++-++.+..|++||..|+|...|+.|-.++.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 34699999999999999999999999999999999865 235566788999999999999999999999987653
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.24 E-value=1.6e-11 Score=90.98 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCC-chhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 23 DASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 23 ~as~~eIk~ayr~l~~~~HPD~~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
..+..+|+++||++++++|||++...+. .+..+.+.+..||+||++|+||.+|+.|...+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3578899999999999999999765432 223477899999999999999999999997654
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.2e-08 Score=66.86 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=54.2
Q ss_pred CCCCCCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccc
Q 031476 2 DGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72 (159)
Q Consensus 2 ~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~ 72 (159)
.||+.+.+..+.--.||||+++++.+.||+|+|++....|||+-.. | -.-.+||+|+++|...
T Consensus 46 ~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P-------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 46 KGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P-------YLASKINEAKDLLEGT 108 (112)
T ss_pred hcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H-------HHHHHHHHHHHHHhcc
Confidence 4778888888888899999999999999999999999999999643 2 2456799999999754
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-07 Score=74.03 Aligned_cols=58 Identities=34% Similarity=0.658 Sum_probs=50.3
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHh-hhccc
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYS-VLSDE 72 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~-~Lsd~ 72 (159)
.-+.+|.||||..+|+..+++.||..|++++|||..... ...+.|.+|.+||. ||+..
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~-----adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-----ADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-----ccHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999986432 46789999999999 78744
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.8e-07 Score=84.29 Aligned_cols=53 Identities=34% Similarity=0.529 Sum_probs=44.9
Q ss_pred cCCcchhcCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhc
Q 031476 11 SLSYYAILGIRK----DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70 (159)
Q Consensus 11 ~~d~Y~vLgv~~----~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Ls 70 (159)
.-+-|+||.|+- .-.+++||++|++|+.+|||||++ +-.++|..||+||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHHHH
Confidence 336799999964 345689999999999999999964 46789999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.3e-05 Score=58.81 Aligned_cols=74 Identities=24% Similarity=0.456 Sum_probs=58.2
Q ss_pred CCcCCcchhcCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCC-CCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 9 GGSLSYYAILGI--RKDASFSDIRSAYHKLAMKWHPDRSAKN-PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 9 ~~~~d~Y~vLgv--~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
+...+||.++|. .....+..++.-|.-..+++|||+.... ....+.+.+....|++||.+|.||-.|+.|=..+
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 346789999986 4566777788799999999999995431 1222258889999999999999999999997644
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.47 E-value=0.00016 Score=62.02 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCch-h--HHHHHHHHHHHHHhh
Q 031476 19 GIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVA-G--EAKCRFQQIQEAYSV 68 (159)
Q Consensus 19 gv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~-~--~a~~~f~~i~~Ay~~ 68 (159)
+|..-.++++||++||+.++.+||||.++.+... + .+++.|-.+++||..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3455679999999999999999999998753211 1 255556666666654
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=5.9e-05 Score=56.76 Aligned_cols=58 Identities=33% Similarity=0.473 Sum_probs=49.5
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCCchhHHHHHHHHHHHHHhhh
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVL 69 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~~a~~~f~~i~~Ay~~L 69 (159)
.+.|.+|++...+...+|+++|+++....|||+... ..+....+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999654 2334446889999999999854
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00024 Score=53.42 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=56.1
Q ss_pred CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCchh-HHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 13 SYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAG-EAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 13 d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~-~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
+++..+|+.+.+ ..+.++..|+.+.+.+|||+....+.... .+.+.+..++.||.+|.+|..|..|=..+.+
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~ 76 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALAD 76 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcc
Confidence 455666666544 45568999999999999999876543222 3678999999999999999999999775543
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.03 E-value=0.014 Score=41.72 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=37.6
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccch
Q 031476 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73 (159)
Q Consensus 13 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~ 73 (159)
.-..||||++..+.++|.+.|.+|....+|++. ...=.-.+|..|.+.|..+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG--------GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG--------GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT--------S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC--------CCHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999974 24444566888888887544
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=95.48 E-value=0.029 Score=39.33 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchh
Q 031476 22 KDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74 (159)
Q Consensus 22 ~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~ 74 (159)
+..+..+++.|.|...++.|||.+.+.|..++..++-++.++.-.+.|..+..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~~ 56 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRKS 56 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccCC
Confidence 34567889999999999999999999998777788888889888888876543
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=93.39 E-value=0.25 Score=30.53 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=24.6
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHH
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAM 38 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~ 38 (159)
.+-|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999999887
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=90.92 E-value=0.39 Score=36.83 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhc
Q 031476 21 RKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70 (159)
Q Consensus 21 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Ls 70 (159)
+++|+.|||.+|+.++..+|-- ..+.-..|..||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g------------d~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG------------DEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHH
Confidence 5789999999999999999933 3345677999999654
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.49 Score=38.88 Aligned_cols=58 Identities=28% Similarity=0.431 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 23 DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 23 ~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
.++..+|..+|+..++..||++............+.+++|.+||.+|.+...|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3577889999999999999998632000011356789999999999998666656655
No 77
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=67.05 E-value=3.3 Score=17.90 Aligned_cols=13 Identities=38% Similarity=0.859 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhc
Q 031476 58 RFQQIQEAYSVLS 70 (159)
Q Consensus 58 ~f~~i~~Ay~~Ls 70 (159)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=63.29 E-value=34 Score=22.24 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=26.0
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 031476 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDR 44 (159)
Q Consensus 13 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~ 44 (159)
|.-+++|+.+-|++.||+.|-++.++++.--.
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 44578899999999999999988888874444
No 79
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=62.13 E-value=10 Score=19.59 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 031476 25 SFSDIRSAYHKLAMKWHP 42 (159)
Q Consensus 25 s~~eIk~ayr~l~~~~HP 42 (159)
..++.|.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347889999999999984
No 80
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.76 E-value=11 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.0
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 031476 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRS 45 (159)
Q Consensus 14 ~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~ 45 (159)
--.||+|++..+.++|.+.|..|-....+.+.
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskG 92 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKG 92 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccC
Confidence 34699999999999999999999999877664
No 81
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=57.83 E-value=18 Score=24.75 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCCCCcCCcch-----hcCCCCCCCHHHHHHHHHHHHHHhC
Q 031476 6 GSNGGSLSYYA-----ILGIRKDASFSDIRSAYHKLAMKWH 41 (159)
Q Consensus 6 ~~~~~~~d~Y~-----vLgv~~~as~~eIk~ayr~l~~~~H 41 (159)
-|+++..|.|. +|.|++.++.+++|.+-.++...+.
T Consensus 10 lsng~~vdlydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F~ 50 (120)
T PRK15321 10 LSNGGDVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFK 50 (120)
T ss_pred cCCCCcchHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHhC
Confidence 46777888774 6789999999999999999988885
No 82
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=55.80 E-value=24 Score=22.01 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 31 ~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
+..|...+.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~---------~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK---------ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566677788986 255678889999999998776655443
No 83
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=47.78 E-value=40 Score=19.88 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.++...+.-||+. ...+....|...|..|++.++....+
T Consensus 12 ~~~~~~~~~~~~~~~---------~~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGL---------SVGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456677778888885 35668889999999999765554444
No 84
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=47.49 E-value=40 Score=20.06 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 32 AYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 32 ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
..|...+.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~r~~~~~~~p~~---------~~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 14 EQRPKLKKENPDA---------SVTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666778884 36678899999999999766555444
No 85
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=43.94 E-value=50 Score=20.76 Aligned_cols=41 Identities=17% Similarity=0.043 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.++..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 13 ~~~~r~~~~~~~p~~---------~~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGL---------TNNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 456777888889986 25567888999999999666554443
No 86
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=37.01 E-value=71 Score=21.41 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhccc
Q 031476 19 GIRKDASF-SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (159)
Q Consensus 19 gv~~~as~-~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 81 (159)
|++|+... .+|-+.|..++..+++. ..+.+..|.+.| +.||.-+..||..
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-----------~~~~~~~l~~~y--~~~~~~~~~~~~~ 101 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-----------DPELLRGLAQMY--VEDPRFAAMYDKK 101 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS--------------HHHHHHHHHHT--TSTHHHHHHHG-G
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHH--HcCHHHHhhcccc
Confidence 45555433 33667777777777651 234677777777 6778888888743
No 87
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=35.45 E-value=71 Score=19.15 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+.++...+.-||+. ...+..+.|.+.|.-|++.++...
T Consensus 12 ~~~~~~~~k~~~p~~---------~~~~i~~~~~~~W~~l~~~eK~~y 50 (69)
T PF00505_consen 12 CKEKRAKLKEENPDL---------SNKEISKILAQMWKNLSEEEKAPY 50 (69)
T ss_dssp HHHHHHHHHHHSTTS---------THHHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---------ccccchhhHHHHHhcCCHHHHHHH
Confidence 345566667779987 366788999999999986555443
No 88
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=34.96 E-value=11 Score=23.66 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=20.4
Q ss_pred cCCcchhcCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 031476 11 SLSYYAILGIRKDASFSDI-RSAYHKLAMKWHPDR 44 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eI-k~ayr~l~~~~HPD~ 44 (159)
+.+++++||+++ +++ ...........|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 346889998854 566 566677888899985
No 89
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=32.99 E-value=55 Score=27.28 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
.+..|+..-+--||.+ ..++.+.|-+-|+.|++.++|-.+|.
T Consensus 74 Sq~~RRkma~qnP~mH---------NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMH---------NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hHHHHHHHHHhCcchh---------hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 3566777777778884 56789999999999999999998886
No 90
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.52 E-value=41 Score=30.25 Aligned_cols=26 Identities=8% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCC
Q 031476 19 GIRKDASFSDIRSAYHKLAMKWHPDR 44 (159)
Q Consensus 19 gv~~~as~~eIk~ayr~l~~~~HPD~ 44 (159)
-++..+..++||.++.++.+.|||.+
T Consensus 396 ~~Ps~~~mEqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 396 STPSDVLMEQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhChHH
Confidence 44567778999999999999999987
No 91
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=32.50 E-value=1.4e+02 Score=19.38 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=25.4
Q ss_pred chhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 031476 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRS 45 (159)
Q Consensus 15 Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~ 45 (159)
-.+.|+.|-+|.+||+.|=.+.+++..--..
T Consensus 6 ~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~ 36 (78)
T PF10041_consen 6 KTLRNFEPPATDEEIRAAALQYVRKVSGFRK 36 (78)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 3456888999999999999999999865543
No 92
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=31.92 E-value=65 Score=26.52 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=43.8
Q ss_pred CCCCcCCcchhcCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhh
Q 031476 7 SNGGSLSYYAILGIRK-DASFSDIRSAYHKLAMKW-------HPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (159)
Q Consensus 7 ~~~~~~d~Y~vLgv~~-~as~~eIk~ayr~l~~~~-------HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R 75 (159)
-|....++++-||++. ..+.+|+.+--+.++.+. ++|....- .....-.+.+..+.+||+.|.+.-..
T Consensus 77 lNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~y~~l~~~~p~ 152 (318)
T PF12725_consen 77 LNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVV-DIPYDKEEIFEEAREGYENLAERYPF 152 (318)
T ss_pred hhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccc-cCCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 3556778899999987 789999887776665443 33222110 00012477899999999998854433
No 93
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=30.21 E-value=20 Score=33.34 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=23.5
Q ss_pred CchHhHHHHHHHHhcCcceeeeecCCC
Q 031476 112 DSFEDLQRMFVEMVDGMSFDFNYDPTD 138 (159)
Q Consensus 112 ~~~~~~~~~f~e~~~G~~~~~~~~~~~ 138 (159)
++..++.++|+++|+|+.+.+.+.+.+
T Consensus 658 dI~y~l~vtLEeLY~G~tKkIKitR~V 684 (871)
T TIGR03835 658 NLVYEEEVPQILFFNNQIKEIKYTRHT 684 (871)
T ss_pred ceEEecccCHHHHhCCCeEEEEEEEee
Confidence 367788999999999999999996665
No 94
>smart00398 HMG high mobility group.
Probab=29.48 E-value=1.1e+02 Score=18.06 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 31 ~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
...+...+.-||+.. ..+....|...|..|++.++....+
T Consensus 14 ~~~r~~~~~~~~~~~---------~~~i~~~~~~~W~~l~~~ek~~y~~ 53 (70)
T smart00398 14 QENRAKIKAENPDLS---------NAEISKKLGERWKLLSEEEKAPYEE 53 (70)
T ss_pred HHHHHHHHHHCcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555666788762 4567788999999999655554433
No 95
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=29.41 E-value=45 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 031476 17 ILGIRKDASFSDIRSAYHKLA 37 (159)
Q Consensus 17 vLgv~~~as~~eIk~ayr~l~ 37 (159)
++-|++.|+..+||+|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466889999999999988864
No 96
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=29.24 E-value=1.1e+02 Score=23.53 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCCCCCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHh
Q 031476 1 MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKW 40 (159)
Q Consensus 1 ~~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~ 40 (159)
|.|--|.-+-.+|+-.+|||.-..+.| ++.|-.|.-+.
T Consensus 26 mqG~rG~~SPgLdPLtaLGIeArsd~E--RrryAEl~vk~ 63 (200)
T TIGR03759 26 MQGPRGVYSPGLDPLTALGIEARSDEE--RRRYAELWVKQ 63 (200)
T ss_pred hcCCccCcCCCCChhhhhccccCCHHH--HHHHHHHHHHH
Confidence 555556666678999999997654444 77777766544
No 97
>PRK10613 hypothetical protein; Provisional
Probab=28.89 E-value=22 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=9.1
Q ss_pred CHHHHHHHHHH
Q 031476 25 SFSDIRSAYHK 35 (159)
Q Consensus 25 s~~eIk~ayr~ 35 (159)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 66889999984
No 98
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=28.69 E-value=97 Score=18.22 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=18.9
Q ss_pred chhcCCCCCCCHHHHHHHHHHHH
Q 031476 15 YAILGIRKDASFSDIRSAYHKLA 37 (159)
Q Consensus 15 Y~vLgv~~~as~~eIk~ayr~l~ 37 (159)
|.+=|+.|..+++|.|+.-|+-+
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 45678999999999999888744
No 99
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=26.43 E-value=26 Score=22.50 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=9.1
Q ss_pred CHHHHHHHHHH
Q 031476 25 SFSDIRSAYHK 35 (159)
Q Consensus 25 s~~eIk~ayr~ 35 (159)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 67889999984
No 100
>COG2879 Uncharacterized small protein [Function unknown]
Probab=26.15 E-value=1.4e+02 Score=18.70 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCCC
Q 031476 32 AYHKLAMKWHPDRSA 46 (159)
Q Consensus 32 ayr~l~~~~HPD~~~ 46 (159)
.|-.-.++.|||+.+
T Consensus 27 nYVehmr~~hPd~p~ 41 (65)
T COG2879 27 NYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHhCcCCCc
Confidence 577778999999954
No 101
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.85 E-value=63 Score=26.00 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccch
Q 031476 25 SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73 (159)
Q Consensus 25 s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~ 73 (159)
..+.|..++.+++..+.|++ |..|.+||..|++..
T Consensus 180 i~~~ld~~l~~~~~~Fd~~~--------------Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 180 IEEQLDSDLSKVCQDFDPDK--------------YSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHHHhCCHHH--------------HHHHHHHHHHHhhhH
Confidence 34567777888888776654 888999999998543
No 102
>PRK07394 hypothetical protein; Provisional
Probab=25.28 E-value=56 Score=27.20 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=27.4
Q ss_pred CCCCCCCC--C--cCCcchhcCCCCCC-CHHHHHHHHHHH
Q 031476 2 DGGGGSNG--G--SLSYYAILGIRKDA-SFSDIRSAYHKL 36 (159)
Q Consensus 2 ~~~~~~~~--~--~~d~Y~vLgv~~~a-s~~eIk~ayr~l 36 (159)
||.-+.++ + +-|..+-|||+-.. +++++.+...+.
T Consensus 118 HGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~~~ 157 (342)
T PRK07394 118 HGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFEQT 157 (342)
T ss_pred ECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHHHc
Confidence 55544443 4 56999999999988 999999998873
No 103
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=23.23 E-value=67 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHH
Q 031476 23 DASFSDIRSAYHKL 36 (159)
Q Consensus 23 ~as~~eIk~ayr~l 36 (159)
...+..|++|||+|
T Consensus 77 pl~P~hlreA~rrL 90 (90)
T PF04719_consen 77 PLQPDHLREAYRRL 90 (90)
T ss_dssp S--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhC
Confidence 45788999999986
No 104
>CHL00030 rpl23 ribosomal protein L23
Probab=23.16 E-value=70 Score=21.50 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 031476 17 ILGIRKDASFSDIRSAYHKLA 37 (159)
Q Consensus 17 vLgv~~~as~~eIk~ayr~l~ 37 (159)
++-|++.|+..|||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 456889999999999998763
No 105
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=22.99 E-value=83 Score=21.25 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=26.1
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRS 45 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~ 45 (159)
.-.+|.||-++...|..+|-+.-...+++-+||-.
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 34689999999999998866655555666677763
No 106
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=22.85 E-value=60 Score=18.99 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=17.8
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHH
Q 031476 17 ILGIRKDASFSDIRSAYHKLAMK 39 (159)
Q Consensus 17 vLgv~~~as~~eIk~ayr~l~~~ 39 (159)
|=+|+++++.++|++.|.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 44788999999999888875443
No 107
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=22.80 E-value=65 Score=27.92 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCCC--CCCCCcCCcchhc-CCCCCCCHHHHHHHHHHH
Q 031476 1 MDGGG--GSNGGSLSYYAIL-GIRKDASFSDIRSAYHKL 36 (159)
Q Consensus 1 ~~~~~--~~~~~~~d~Y~vL-gv~~~as~~eIk~ayr~l 36 (159)
|||+- ++.+++.|-.+.| |++-+.+++++++...+.
T Consensus 111 Khg~R~lss~~GTaD~LE~LpG~~v~ls~e~~~~~l~~~ 149 (440)
T PRK05820 111 MISGRGLGHTGGTLDKLEAIPGYRAFPSNDRFREILKDV 149 (440)
T ss_pred eeCCCCCCCcccHHHHHHhCCCCCCCCCHHHHHHHHHHc
Confidence 35665 6788899999999 999999999999998874
No 108
>PRK09071 hypothetical protein; Validated
Probab=20.27 E-value=81 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.5
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHH
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKL 36 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l 36 (159)
..|..+-|||+-..+++++++...+.
T Consensus 124 saDvLeaLGv~~~~~~~~~~~~l~~~ 149 (323)
T PRK09071 124 TEQLLEALGIPIARSWQEAEQALEEH 149 (323)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHhc
Confidence 78999999999999999999998864
Done!