Query 031476
Match_columns 159
No_of_seqs 205 out of 1972
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 4.1E-24 1.4E-28 140.3 7.9 76 6-85 1-76 (79)
2 2ej7_A HCG3 gene; HCG3 protein 99.9 1.1E-23 3.8E-28 139.1 8.0 79 4-85 1-79 (82)
3 2ctp_A DNAJ homolog subfamily 99.9 1.1E-23 3.7E-28 138.0 6.6 75 6-85 1-75 (78)
4 2yua_A Williams-beuren syndrom 99.9 1.8E-23 6.2E-28 142.9 7.8 73 8-84 13-85 (99)
5 3lz8_A Putative chaperone DNAJ 99.9 2.5E-25 8.5E-30 181.1 -1.9 126 8-138 24-168 (329)
6 2ctr_A DNAJ homolog subfamily 99.9 3.4E-23 1.2E-27 138.6 6.8 72 6-82 1-72 (88)
7 2dmx_A DNAJ homolog subfamily 99.9 3.6E-23 1.2E-27 139.5 6.6 79 4-85 1-79 (92)
8 1hdj_A Human HSP40, HDJ-1; mol 99.9 7.5E-23 2.6E-27 133.6 6.7 68 12-84 3-70 (77)
9 1wjz_A 1700030A21RIK protein; 99.9 6.1E-23 2.1E-27 138.7 6.1 77 9-85 13-91 (94)
10 1bq0_A DNAJ, HSP40; chaperone, 99.9 6.5E-23 2.2E-27 141.0 6.0 71 11-85 2-72 (103)
11 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.3E-22 7.7E-27 134.6 7.3 71 10-85 15-85 (88)
12 2ctq_A DNAJ homolog subfamily 99.9 1.4E-22 4.9E-27 141.3 6.0 72 9-84 17-88 (112)
13 2och_A Hypothetical protein DN 99.9 2.4E-22 8.1E-27 130.0 5.7 67 9-82 5-71 (73)
14 2ctw_A DNAJ homolog subfamily 99.9 5.3E-22 1.8E-26 137.8 7.5 71 8-82 13-83 (109)
15 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 8.9E-23 3.1E-27 141.6 3.5 78 8-86 11-89 (109)
16 2lgw_A DNAJ homolog subfamily 99.8 1E-21 3.5E-26 134.2 6.3 69 12-83 2-70 (99)
17 2o37_A Protein SIS1; HSP40, J- 99.8 1.3E-21 4.4E-26 131.9 5.0 67 9-82 5-71 (92)
18 3apq_A DNAJ homolog subfamily 99.8 1.5E-21 5.2E-26 148.3 5.9 69 12-84 2-70 (210)
19 2l6l_A DNAJ homolog subfamily 99.8 3.9E-21 1.3E-25 141.0 6.7 76 7-82 5-82 (155)
20 2ys8_A RAB-related GTP-binding 99.8 1.4E-20 4.7E-25 126.4 6.0 62 11-77 26-87 (90)
21 1fpo_A HSC20, chaperone protei 99.8 3.1E-20 1.1E-24 138.4 3.9 72 12-83 1-75 (171)
22 3hho_A CO-chaperone protein HS 99.8 5.3E-20 1.8E-24 137.4 5.1 74 10-83 2-78 (174)
23 1iur_A KIAA0730 protein; DNAJ 99.8 1.6E-19 5.4E-24 120.8 3.9 67 8-77 12-78 (88)
24 3bvo_A CO-chaperone protein HS 99.8 2.7E-19 9.2E-24 136.9 5.1 72 11-82 42-116 (207)
25 1gh6_A Large T antigen; tumor 99.8 6.1E-20 2.1E-24 128.3 1.3 63 11-81 7-71 (114)
26 1n4c_A Auxilin; four helix bun 99.8 2.3E-19 7.8E-24 134.4 4.1 69 9-78 114-182 (182)
27 2guz_A Mitochondrial import in 99.8 3.2E-19 1.1E-23 114.7 3.3 66 3-76 5-71 (71)
28 1faf_A Large T antigen; J doma 99.7 4.2E-19 1.4E-23 116.4 3.0 63 10-80 9-73 (79)
29 2pf4_E Small T antigen; PP2A, 99.7 3E-19 1E-23 132.9 1.5 65 10-82 9-75 (174)
30 3ag7_A Putative uncharacterize 99.7 4.2E-19 1.4E-23 122.6 1.4 64 9-73 38-104 (106)
31 2qwo_B Putative tyrosine-prote 99.7 1.7E-18 5.6E-23 116.5 2.8 59 12-71 33-91 (92)
32 3apo_A DNAJ homolog subfamily 99.7 4.8E-19 1.6E-23 157.0 -0.7 74 8-85 17-90 (780)
33 3uo3_A J-type CO-chaperone JAC 99.7 4.1E-18 1.4E-22 127.9 3.0 69 7-82 6-81 (181)
34 2y4t_A DNAJ homolog subfamily 99.2 5.2E-12 1.8E-16 102.4 4.3 70 11-81 381-450 (450)
35 2guz_B Mitochondrial import in 99.0 1.5E-10 5E-15 72.7 3.6 52 13-72 5-59 (65)
36 2ctt_A DNAJ homolog subfamily 96.7 6.8E-05 2.3E-09 50.7 -2.8 41 112-156 3-43 (104)
37 1nlt_A Protein YDJ1, mitochond 96.4 0.0004 1.4E-08 53.9 -0.6 44 108-155 9-52 (248)
38 2pzi_A Probable serine/threoni 91.9 0.087 3E-06 45.7 2.9 46 11-68 628-675 (681)
39 3pmq_A Decaheme cytochrome C M 51.9 0.4 1.4E-05 42.1 -5.5 39 114-156 168-206 (669)
40 4a3n_A Transcription factor SO 51.1 19 0.00064 21.2 3.6 39 30-77 14-52 (71)
41 1i11_A Transcription factor SO 50.9 26 0.0009 21.3 4.4 41 30-79 16-56 (81)
42 3nm9_A HMG-D, high mobility gr 49.2 27 0.00091 20.8 4.1 39 30-80 15-53 (73)
43 2crj_A SWI/SNF-related matrix- 48.4 28 0.00097 21.8 4.4 41 30-79 19-59 (92)
44 1hme_A High mobility group pro 45.3 36 0.0012 20.3 4.4 39 30-77 18-56 (77)
45 2d7l_A WD repeat and HMG-box D 45.2 25 0.00087 21.8 3.6 43 30-80 17-59 (81)
46 3f27_D Transcription factor SO 44.9 29 0.00098 21.1 3.9 40 30-78 18-57 (83)
47 2cs1_A PMS1 protein homolog 1; 44.6 26 0.00088 22.0 3.7 42 30-80 19-60 (92)
48 1exk_A DNAJ protein; extended 43.8 9.7 0.00033 23.2 1.4 24 127-154 1-24 (79)
49 1ug2_A 2610100B20RIK gene prod 42.7 14 0.00048 24.0 2.1 23 23-45 67-89 (95)
50 1wgf_A Upstream binding factor 41.4 25 0.00087 22.0 3.2 41 30-79 32-72 (90)
51 1gt0_D Transcription factor SO 40.6 29 0.001 21.0 3.4 41 30-79 14-54 (80)
52 1qqr_A Streptokinase domain B; 39.9 15 0.00051 25.5 2.0 31 14-44 34-64 (138)
53 2co9_A Thymus high mobility gr 38.6 36 0.0012 21.8 3.7 41 30-79 29-69 (102)
54 4euw_A Transcription factor SO 38.1 40 0.0014 21.8 3.9 42 29-79 40-81 (106)
55 1j46_A SRY, sex-determining re 37.9 39 0.0013 20.7 3.7 39 30-77 16-54 (85)
56 3u2b_C Transcription factor SO 37.2 39 0.0013 20.2 3.6 39 30-77 14-52 (79)
57 2lef_A LEF-1 HMG, protein (lym 37.2 42 0.0014 20.6 3.7 39 30-77 14-52 (86)
58 2e6o_A HMG box-containing prot 36.9 33 0.0011 21.2 3.2 40 29-77 28-67 (87)
59 1ckt_A High mobility group 1 p 34.8 45 0.0016 19.5 3.5 41 31-78 14-54 (71)
60 1hry_A Human SRY; DNA, DNA-bin 33.8 30 0.001 20.6 2.6 39 30-77 16-54 (76)
61 1wz6_A HMG-box transcription f 33.7 31 0.0011 21.0 2.6 40 30-78 19-58 (82)
62 1k99_A Upstream binding factor 29.9 51 0.0017 21.0 3.3 41 30-79 22-62 (99)
63 2lr8_A CAsp8-associated protei 34.8 12 0.00041 23.0 0.0 31 14-44 38-68 (70)
64 2bx9_A Anti-trap, AT, tryptoph 28.5 15 0.00052 21.1 0.4 16 143-158 11-26 (53)
65 2lxi_A RNA-binding protein 10; 26.1 48 0.0016 20.3 2.6 21 17-37 6-26 (91)
66 2eqz_A High mobility group pro 25.4 1.2E+02 0.004 18.5 4.4 43 30-79 27-69 (86)
67 2wbr_A GW182, gawky, LD47780P; 25.3 51 0.0017 21.0 2.6 31 5-36 1-31 (89)
68 2cqn_A Formin-binding protein 23.6 1.3E+02 0.0046 18.3 4.6 55 24-81 6-61 (77)
69 2elc_A Trp D, anthranilate pho 23.3 59 0.002 25.7 3.1 39 6-44 113-157 (329)
70 3tq6_A Transcription factor A, 22.5 86 0.0029 23.0 3.8 41 30-79 21-61 (214)
71 1o17_A Anthranilate PRT, anthr 22.2 57 0.0019 26.0 2.9 39 6-44 113-157 (345)
72 3tmm_A Transcription factor A, 22.2 84 0.0029 23.4 3.7 41 30-79 53-93 (238)
73 2cqh_A IGF-II mRNA-binding pro 22.2 1.1E+02 0.0037 18.3 3.8 23 12-35 9-31 (93)
74 1wxl_A Single-strand recogniti 22.2 1.3E+02 0.0044 17.6 4.2 38 30-79 15-52 (73)
75 3lcz_A YCZA, inhibitor of trap 21.8 24 0.00082 20.3 0.4 12 143-154 11-22 (53)
76 1x5s_A Cold-inducible RNA-bind 20.9 1.3E+02 0.0044 18.3 4.0 20 17-36 17-36 (102)
77 3r88_A Anthranilate phosphorib 20.8 68 0.0023 25.9 3.1 38 6-43 141-184 (377)
78 1vq8_S 50S ribosomal protein L 20.6 55 0.0019 20.7 2.0 21 17-37 26-46 (85)
79 1khd_A Anthranilate phosphorib 20.3 69 0.0023 25.5 3.0 37 8-44 129-171 (345)
80 4hkm_A Anthranilate phosphorib 20.2 61 0.0021 25.7 2.6 39 6-44 120-164 (346)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=4.1e-24 Score=140.25 Aligned_cols=76 Identities=51% Similarity=0.800 Sum_probs=68.9
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
|+.+...|||+||||+++++.++||+|||+|++++|||+++..+ .+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 1 gs~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 1 GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CCSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT----THHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 56778889999999999999999999999999999999987554 58899999999999999999999999976543
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=139.05 Aligned_cols=79 Identities=46% Similarity=0.816 Sum_probs=68.8
Q ss_pred CCCCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 4 ~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
|.++.....|||+||||+++++.++||+|||+|++++|||+++.. ...+.+.|+.|++||++|+||.+|..||..+.
T Consensus 1 g~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN---KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp CCSCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT---HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 344555678999999999999999999999999999999997543 23688999999999999999999999999775
Q ss_pred CC
Q 031476 84 DP 85 (159)
Q Consensus 84 ~~ 85 (159)
.+
T Consensus 78 ~~ 79 (82)
T 2ej7_A 78 GP 79 (82)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=137.96 Aligned_cols=75 Identities=44% Similarity=0.704 Sum_probs=67.7
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
||.+...|||+||||+++++.++||+|||+|++++|||++.. ..+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 1 gs~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 1 GSSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-----PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CCCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-----HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 466778899999999999999999999999999999999753 268899999999999999999999999876543
No 4
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=142.86 Aligned_cols=73 Identities=34% Similarity=0.609 Sum_probs=66.6
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
.+...|||+||||+++|+.++||+|||+|++++|||+++.++ .+.+.|+.|++||+||+||.+|..||..+..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA----EAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 456789999999999999999999999999999999986543 6889999999999999999999999997643
No 5
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.89 E-value=2.5e-25 Score=181.10 Aligned_cols=126 Identities=28% Similarity=0.457 Sum_probs=26.4
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCC-
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL- 86 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~- 86 (159)
.+...|||+||||+++|+.++||+|||+|+++||||+++.+ .+.++|++|++||++|+||.+|+.||..+....
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 98 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRND 98 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----HHHHHHHHHHHHHHHhhhhhhhcccchhhccccC
Confidence 44567999999999999999999999999999999997542 578899999999999999999999998632110
Q ss_pred -------c--c---ccchhhhHHHHHHhhc------cccCCCCCchHhHHHHHHHHhcCcceeeeecCCC
Q 031476 87 -------E--E---EDEDFYGFVQEMVSMM------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTD 138 (159)
Q Consensus 87 -------~--~---~~~~f~~~~~~~~~~~------~~~~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~ 138 (159)
. . ...+|.++|+.+|+.. ....++.|+..++.++|+|+|.|+++.+.+.+.+
T Consensus 99 ~~~~~~~~~~~~~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v 168 (329)
T 3lz8_A 99 PGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPV 168 (329)
T ss_dssp --------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEE
T ss_pred CCcccccccccCCcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEe
Confidence 0 0 0124556666666531 1133566788899999999999999999996553
No 6
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.4e-23 Score=138.61 Aligned_cols=72 Identities=51% Similarity=0.821 Sum_probs=66.2
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
|+++...|||+||||+++++.++||+|||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||..+
T Consensus 1 gs~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 1 GSSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-----PDAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-----HHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 467778899999999999999999999999999999999762 268899999999999999999999999865
No 7
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=139.50 Aligned_cols=79 Identities=46% Similarity=0.834 Sum_probs=68.7
Q ss_pred CCCCCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 4 ~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
|.++.....|||+||||+++++.++||+|||+|++++|||+++... ..+.+.|+.|++||++|+||.+|..||..+.
T Consensus 1 ~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK---EEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 3445556789999999999999999999999999999999976542 3688999999999999999999999998664
Q ss_pred CC
Q 031476 84 DP 85 (159)
Q Consensus 84 ~~ 85 (159)
..
T Consensus 78 ~~ 79 (92)
T 2dmx_A 78 DS 79 (92)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=7.5e-23 Score=133.61 Aligned_cols=68 Identities=38% Similarity=0.688 Sum_probs=62.5
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
.|||+||||+++++.++||+|||+|++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 5899999999999999999999999999999997642 5889999999999999999999999987643
No 9
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.87 E-value=6.1e-23 Score=138.74 Aligned_cols=77 Identities=30% Similarity=0.592 Sum_probs=67.0
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--CchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNP--GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
....|||+||||+++++.++||+|||+|++++|||+++.+. .....+.+.|+.|++||++|+||.+|+.||..+..+
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 45679999999999999999999999999999999986432 222468899999999999999999999999977543
No 10
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.87 E-value=6.5e-23 Score=141.03 Aligned_cols=71 Identities=46% Similarity=0.777 Sum_probs=64.5
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
..|||+||||+++++.++||+|||+|++++|||+++.++ .+.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTC----THHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 368999999999999999999999999999999987543 58889999999999999999999999977544
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.3e-22 Score=134.61 Aligned_cols=71 Identities=44% Similarity=0.714 Sum_probs=64.7
Q ss_pred CcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
...|||+||||+++++.++||+|||+|++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-----GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-----THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 577999999999999999999999999999999997642 58899999999999999999999999876543
No 12
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=141.32 Aligned_cols=72 Identities=31% Similarity=0.524 Sum_probs=65.3
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
....|||+||||+++|+.++||+|||+|++++|||+++.++ .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS----THHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 34689999999999999999999999999999999987554 5889999999999999999999999986543
No 13
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.86 E-value=2.4e-22 Score=129.97 Aligned_cols=67 Identities=45% Similarity=0.818 Sum_probs=60.8
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
....|||+||||+++++.++||++|++|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-------GAEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-------CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-------HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 456899999999999999999999999999999999753 2578999999999999999999999865
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=5.3e-22 Score=137.82 Aligned_cols=71 Identities=41% Similarity=0.732 Sum_probs=64.9
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
.....|||+||||+++|+.++||+|||+|++++|||+++.++ .+.+.|+.|++||++|+||.+|+.||..+
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 445679999999999999999999999999999999986543 58899999999999999999999999865
No 15
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.86 E-value=8.9e-23 Score=141.64 Aligned_cols=78 Identities=31% Similarity=0.439 Sum_probs=67.9
Q ss_pred CCCcCCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCCC
Q 031476 8 NGGSLSYYAILGIRKDA-SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~ 86 (159)
.....|||+||||+++| +.++||+|||+|++++|||+++. +.....+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~ 89 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPD 89 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTT
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCch
Confidence 34578999999999999 99999999999999999999764 22234688999999999999999999999999875543
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=134.24 Aligned_cols=69 Identities=43% Similarity=0.761 Sum_probs=62.7
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
.|||+||||+++++.++||+|||+|++++|||+++... +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~---~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK---EFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCC---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 58999999999999999999999999999999976442 3688999999999999999999999998653
No 17
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-21 Score=131.95 Aligned_cols=67 Identities=31% Similarity=0.625 Sum_probs=60.9
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
....|||+||||+++++.++||+|||+|++++|||+++.+ .+.|++|++||++|+||.+|..||..+
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-------HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-------HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 3567999999999999999999999999999999997532 458999999999999999999999865
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.84 E-value=1.5e-21 Score=148.31 Aligned_cols=69 Identities=43% Similarity=0.716 Sum_probs=63.5
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCC
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 84 (159)
.|||+||||+++|+.++||+|||+|++++|||+++.++ .+.+.|+.|++||++|+||.+|+.||..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT----THHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 58999999999999999999999999999999987554 5889999999999999999999999986643
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=141.02 Aligned_cols=76 Identities=29% Similarity=0.581 Sum_probs=66.6
Q ss_pred CCCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--CchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNP--GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 7 ~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
.+....|||+||||+++++.++||+|||+|++++|||+++.++ ..+..+.+.|+.|++||++|+||.+|+.||..+
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456689999999999999999999999999999999987653 223357899999999999999999999999754
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=126.43 Aligned_cols=62 Identities=27% Similarity=0.433 Sum_probs=57.1
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
..|||+||||+++++.++||+|||+|++++|||+++.. .+.+.|++|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-----GSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT-----THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCcccccC
Confidence 57999999999999999999999999999999998642 588899999999999999999874
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.79 E-value=3.1e-20 Score=138.38 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=63.4
Q ss_pred CCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCC-chhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 12 ~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
+|||+||||++++ +..+||++||+|++++|||+++..+. .+..+.+.|..|++||+||+||.+|..||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 4899999999999 99999999999999999999876542 223467899999999999999999999998654
No 22
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.79 E-value=5.3e-20 Score=137.44 Aligned_cols=74 Identities=26% Similarity=0.376 Sum_probs=63.1
Q ss_pred CcCCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCCc-hhHHHHHHHHHHHHHhhhccchhhhhhcccCC
Q 031476 10 GSLSYYAILGIRKDAS--FSDIRSAYHKLAMKWHPDRSAKNPGV-AGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~-~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 83 (159)
..+|||+||||+++++ .++||++||+|++++|||+++..+.. +..+.+.|..|++||+||+||.+|..||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 3579999999999987 99999999999999999998765421 12377999999999999999999999997553
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.77 E-value=1.6e-19 Score=120.76 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=58.5
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.....++|+||||+++|+.++||+|||+|++++|||+++.++ +.+.+.|+.|++||++|++...|..
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~---~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH---DIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH---HHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch---HHHHHHHHHHHHHHHHHHhhccccc
Confidence 445678999999999999999999999999999999975432 3688999999999999999887743
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.76 E-value=2.7e-19 Score=136.95 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=62.5
Q ss_pred cCCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCC-chhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 11 SLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 11 ~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
..|||+||||+++ ++.++||++||+|++++|||+++..+. .+..+.+.|+.|++||+||+||.+|+.||..+
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 5799999999986 799999999999999999999876442 22347789999999999999999999999643
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.76 E-value=6.1e-20 Score=128.31 Aligned_cols=63 Identities=24% Similarity=0.375 Sum_probs=57.5
Q ss_pred cCCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhccc
Q 031476 11 SLSYYAILGIRKDASF--SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 81 (159)
..+||+||||+++|+. ++||+|||+|++++|||+++. .++|++|++||+||+||.+|+.||..
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--------~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--------TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--------HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 4689999999999999 999999999999999999653 35799999999999999999999964
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.76 E-value=2.3e-19 Score=134.41 Aligned_cols=69 Identities=19% Similarity=0.398 Sum_probs=60.9
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhh
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Y 78 (159)
|...|||+||||++.|+.++||+|||+|++++|||+++..+. ...+.+.|+.|++||++|+||.+|+.|
T Consensus 114 ~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~-e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 114 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-EQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT-HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch-HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 344699999999999999999999999999999999875432 124889999999999999999999987
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.2e-19 Score=114.71 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCcchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhh
Q 031476 3 GGGGSNGGSLSYYAILGIRK-DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (159)
Q Consensus 3 ~~~~~~~~~~d~Y~vLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~ 76 (159)
||....+...++|+||||++ +++.++||+|||+|++++|||+.. +.+.|++|++||++|+++..|+
T Consensus 5 g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--------~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 5 GGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--------SPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp SCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--------CHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHhhhhhcC
Confidence 56666677779999999998 799999999999999999999942 3458999999999999987663
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.74 E-value=4.2e-19 Score=116.44 Aligned_cols=63 Identities=14% Similarity=0.351 Sum_probs=55.9
Q ss_pred CcCCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 10 GSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
...++|+||||+++ ++.++||+|||+|++++|||+++ +.+.|++|++||++|+|+..|..++.
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~~ 73 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMNL 73 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 34579999999999 99999999999999999999953 35689999999999999999988543
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.74 E-value=3e-19 Score=132.94 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=56.6
Q ss_pred CcCCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccC
Q 031476 10 GSLSYYAILGIRKDAS--FSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (159)
Q Consensus 10 ~~~d~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 82 (159)
...|||+||||+++|+ .++||+|||++++++|||+++. .++|++|++||++|+||.+|+.||..+
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--------~e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--------CTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--------HHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 3568999999999998 6999999999999999999653 247999999999999999999999965
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.73 E-value=4.2e-19 Score=122.58 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=53.9
Q ss_pred CCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CCchhHHHHHHHHHHHHHhhhccch
Q 031476 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN---PGVAGEAKCRFQQIQEAYSVLSDEN 73 (159)
Q Consensus 9 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~a~~~f~~i~~Ay~~Lsd~~ 73 (159)
|...|||+|||++. ||.++||+|||++++++|||+++.. ++....+.++|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 44579999999996 9999999999999999999997531 1222247899999999999999985
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.72 E-value=1.7e-18 Score=116.49 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=52.1
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhcc
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd 71 (159)
.++|++|||++.|+.++||+|||++++++|||+++.++. ...+.+.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-HhHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999875432 13588999999999999975
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.71 E-value=4.8e-19 Score=156.98 Aligned_cols=74 Identities=41% Similarity=0.654 Sum_probs=40.6
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcccCCCC
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 85 (159)
.....|||+||||+++|+.++||+|||+|++++|||+++.++ .+.++|++|++||++|+||.+|+.||..+..+
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~----~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 445789999999999999999999999999999999986543 57889999999999999999999999976543
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.70 E-value=4.1e-18 Score=127.90 Aligned_cols=69 Identities=23% Similarity=0.402 Sum_probs=60.1
Q ss_pred CCCCcCCcchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 7 SNGGSLSYYAIL------GIRK-DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 7 ~~~~~~d~Y~vL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
+.....|||+|| |+++ +++.++||++||+|++++|||+++. +.+.|+.|++||+||+||.+|..||
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------a~~~f~~i~~AY~vL~dp~~R~~Yd 78 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-------GSEQSSTLNQAYHTLKDPLRRSQYM 78 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-------CSSGGGSHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-------HHHHHHHHHHHHHHHcChHHHHHHH
Confidence 345667999999 4665 8999999999999999999999754 4457999999999999999999999
Q ss_pred ccC
Q 031476 80 AGL 82 (159)
Q Consensus 80 ~~~ 82 (159)
..+
T Consensus 79 ~~l 81 (181)
T 3uo3_A 79 LKL 81 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.22 E-value=5.2e-12 Score=102.41 Aligned_cols=70 Identities=39% Similarity=0.679 Sum_probs=56.4
Q ss_pred cCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhccc
Q 031476 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 81 (159)
..++|++||+.+.++.++|+++|+++++++|||+.+.+ .....+.+.|+.|++||++|+||.+|..||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH-HHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 34899999999999999999999999999999997532 11245889999999999999999999999973
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.5e-10 Score=72.72 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=44.8
Q ss_pred CcchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccc
Q 031476 13 SYYAILGIRKD---ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72 (159)
Q Consensus 13 d~Y~vLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~ 72 (159)
.-|.||||++. ++.++|+++||+|...+|||+. ...-....|++|+++|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG--------GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG--------GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT--------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHHHHH
Confidence 45789999998 9999999999999999999994 2445788899999998643
No 36
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=6.8e-05 Score=50.67 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=33.1
Q ss_pred CchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCCCC
Q 031476 112 DSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 156 (159)
Q Consensus 112 ~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~~~ 156 (159)
++..++.++|+|+|+|.++.+.+.+.+ .|..|+|++++.++
T Consensus 3 ~~~~~l~vslee~~~G~~~~i~~~~~~----~C~~C~G~G~~~g~ 43 (104)
T 2ctt_A 3 SGSSGMELTFNQAAKGVNKEFTVNIMD----TCERCNGKGNEPGT 43 (104)
T ss_dssp CCCCCCCCCCSSCCSSSCTTCCSSCCE----ECSSSSSSSSCTTC
T ss_pred ceEEEEEEEHHHHcCCCEEEEEeeeee----ECCCCcCCccCCCC
Confidence 445677889999999999999996664 78888888877663
No 37
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.41 E-value=0.0004 Score=53.90 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCCCCchHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCCC
Q 031476 108 KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 155 (159)
Q Consensus 108 ~~~~~~~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~~ 155 (159)
+++.|+..++.++|+|+|+|+++.+.+.+. ..|..|+|++++.+
T Consensus 9 ~~g~d~~~~l~vslee~~~G~~k~i~~~r~----~~C~~C~G~G~~~g 52 (248)
T 1nlt_A 9 QRGKDIKHEISASLEELYKGRTAKLALNKQ----ILCKECEGRGGKKG 52 (248)
T ss_dssp CBCCCEEEEEEECTTHHHHCEEEEEEEEEE----EECTTTTTCSBSTT
T ss_pred CCCCCEEEEEEecHHHhcCCceEEEEeeEE----EeCCCCcCccCCCC
Confidence 456788889999999999999999999554 47777777776655
No 38
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.89 E-value=0.087 Score=45.71 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=35.6
Q ss_pred cCCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 031476 11 SLSYYAILGIRKDASF--SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV 68 (159)
Q Consensus 11 ~~d~Y~vLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~ 68 (159)
..+||.+||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHhccc
Confidence 4569999999766655 67999999999976443 3578888888775
No 39
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=51.93 E-value=0.4 Score=42.10 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=31.1
Q ss_pred hHhHHHHHHHHhcCcceeeeecCCCcccceeccCCCcccCCCC
Q 031476 114 FEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 156 (159)
Q Consensus 114 ~~~~~~~f~e~~~G~~~~~~~~~~~~~~~~c~~~~g~~~k~~~ 156 (159)
..++.++|+|++.|..+.+++.+ ...|.+|.|++++.|+
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~----~~~C~tCHGsGA~~Gt 206 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVS----IDTCNSCHSNLAFHGG 206 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCC----SHHHHHHHSSCCTTTT
T ss_pred eEEEEEEhHHhhCCCceEEEecc----CCcCCCCCCCCCcCCc
Confidence 45677899999999999999944 4578888888877764
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=51.09 E-value=19 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 14 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y 52 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH---------NAELSKMLGKSWKALTLAEKRPF 52 (71)
T ss_dssp HHHHHHHHHTTCTTSC---------HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 4567777888888862 56788899999999986665543
No 41
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=50.86 E-value=26 Score=21.28 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++...++
T Consensus 16 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 16 AKDERRKILQAFPDM---------HNSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTCSSC---------CHHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 455667777778876 25678889999999999776655444
No 42
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=49.18 E-value=27 Score=20.83 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK---------VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC---------HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4566777788899872 56788899999999986 666643
No 43
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=48.41 E-value=28 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 19 LNERREQIRTRHPDL---------PFPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHHCTTC---------CHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777888986 25678899999999999777655444
No 44
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=45.32 E-value=36 Score=20.31 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+..|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 18 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~y 56 (77)
T 1hme_A 18 CSEYRPKIKGEHPGL---------SIGDVAKKLGEMWNNTAADDKQPY 56 (77)
T ss_dssp HHHHHHHHHHHCTTC---------CHHHHHHHHHHHHHHSCGGGSHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445666677778886 256788999999999996665543
No 45
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.24 E-value=25 Score=21.78 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
-+.+|..++.-||+.. ...+..+.|.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~--------~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--------DEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC--------SHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc--------hhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567788888899873 156788999999999997776665554
No 46
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=44.93 E-value=29 Score=21.14 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Y 78 (159)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 18 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y~ 57 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH---------NAELSKMLGKSWKALTLAEKRPFV 57 (83)
T ss_dssp HHHHHHHHHHHCSSSC---------HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5567778888899872 567888999999999866655433
No 47
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.58 E-value=26 Score=22.02 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhcc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 80 (159)
.+..|..++.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKT---------SLEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSS---------CHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455677777888986 256788999999999997666554443
No 48
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=43.79 E-value=9.7 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=13.2
Q ss_pred CcceeeeecCCCcccceeccCCCcccCC
Q 031476 127 GMSFDFNYDPTDAQRACVNTSKGKAAKR 154 (159)
Q Consensus 127 G~~~~~~~~~~~~~~~~c~~~~g~~~k~ 154 (159)
|.++.|.+.+. ..|..|+|++.+.
T Consensus 1 G~~~~i~~~~~----~~C~~C~G~G~~~ 24 (79)
T 1exk_A 1 GVTKEIRIPTL----EECDVCHGSGAKP 24 (79)
T ss_dssp CTTTSCCCCCE----EECGGGTTTSBCS
T ss_pred CcEEEEEcccc----eECCCCcccccCC
Confidence 34455556333 3666666666544
No 49
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=42.69 E-value=14 Score=24.00 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 031476 23 DASFSDIRSAYHKLAMKWHPDRS 45 (159)
Q Consensus 23 ~as~~eIk~ayr~l~~~~HPD~~ 45 (159)
+-+++||+..|+.|++++|--.-
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999976553
No 50
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=41.42 E-value=25 Score=21.98 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 32 ~~~~r~~~k~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~ 72 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL---------SESELTRLLARMWNDLSEKKKAKYKA 72 (90)
T ss_dssp HHHTHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456677777888985 35678899999999999766555444
No 51
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=40.64 E-value=29 Score=20.98 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 14 SRGQRRKMAQENPKM---------HNSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSTTS---------CHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345666677778875 25667889999999999765554433
No 52
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=39.92 E-value=15 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=26.6
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 031476 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR 44 (159)
Q Consensus 14 ~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~ 44 (159)
++..|-|....+.++++++=..+..++||+-
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 3667778888999999999999999999985
No 53
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.57 E-value=36 Score=21.80 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~i~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 29 FRDTQAAIKGQNPNA---------TFGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHHCTTS---------CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 455677777788986 25678889999999999666655444
No 54
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=38.07 E-value=40 Score=21.82 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 29 IRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 29 Ik~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
-.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 40 F~~~~r~~~k~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 40 WAQAARRKLADQYPHL---------HNAELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHHHCTTS---------CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667778888889986 25678889999999999666554433
No 55
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=37.88 E-value=39 Score=20.73 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 16 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~y 54 (85)
T 1j46_A 16 SRDQRRKMALENPRM---------RNSEISKQLGYQWKMLTEAEKWPF 54 (85)
T ss_dssp HHHHHHHHHHHSTTS---------CHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455667777788886 256678899999999986655443
No 56
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=37.20 E-value=39 Score=20.24 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~y 52 (79)
T 3u2b_C 14 SQIERRKIMEQSPDM---------HNAEISKRLGKRWKLLKDSDKIPF 52 (79)
T ss_dssp HHHHHHHHHTTSTTS---------CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456677777788876 256788899999999986655443
No 57
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=37.18 E-value=42 Score=20.62 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+.+|..++.-||+. ...+....|.+.|..|++.++...
T Consensus 14 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~y 52 (86)
T 2lef_A 14 MKEMRANVVAESTLK---------ESAAINQILGRRWHALSREEQAKY 52 (86)
T ss_dssp HHHHHHHHHHHSSCC---------CHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445677777788886 256678899999999996655443
No 58
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=36.92 E-value=33 Score=21.23 Aligned_cols=40 Identities=10% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 29 IRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 29 Ik~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
-.+.+|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 28 f~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~y 67 (87)
T 2e6o_A 28 FAKKYRVEYTQMYPGK---------DNRAISVILGDRWKKMKNEERRMY 67 (87)
T ss_dssp HHHHTHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhhCCHHHHHHH
Confidence 3566777778888986 256678899999999996665443
No 59
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=34.80 E-value=45 Score=19.46 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhh
Q 031476 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (159)
Q Consensus 31 ~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Y 78 (159)
+..|..++.-||+... ...+..+.|.+.|..|++.++....
T Consensus 14 ~~~r~~~~~~~p~~~~-------~~~eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 14 QTCREEHKKKHPDASV-------NFSEFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHHCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3455666777888631 1356788999999999977655443
No 60
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=33.78 E-value=30 Score=20.63 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 77 (159)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 16 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y 54 (76)
T 1hry_A 16 SRDQRRKMALENPRMR---------NSEISKQLGYQWKMLTEAEKWPF 54 (76)
T ss_dssp HHHHHHHHHHHCSCCS---------SSHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC---------HHHHHHHHHhHHHhCCHHHHHHH
Confidence 4556777777899863 23467889999999986655443
No 61
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=33.68 E-value=31 Score=21.01 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhh
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Y 78 (159)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 19 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y~ 58 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD---------NRGATKILADWWAVLDPKEKQKYT 58 (82)
T ss_dssp HHHHHHHHHHHCSSSC---------TTHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4567777788899863 234678899999999966554433
No 62
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=29.94 E-value=51 Score=21.00 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 22 ~~~~r~~ik~~~P~~~---------~~eisk~lg~~Wk~ls~eeK~~Y~~ 62 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS---------NLDLTKILSKKYKELPEKKKMKYIQ 62 (99)
T ss_dssp HHHHHHHHHTTCTTSC---------SHHHHHHHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556666777788762 4567889999999999776655444
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=34.80 E-value=12 Score=22.99 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=22.2
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 031476 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR 44 (159)
Q Consensus 14 ~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~ 44 (159)
-|..|--.=+-+++||+..|++|++++|--+
T Consensus 38 tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 38 TFAYLAAKLDKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3444432225689999999999999997554
No 64
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=28.45 E-value=15 Score=21.14 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=8.3
Q ss_pred eeccCCCcccCCCCCC
Q 031476 143 CVNTSKGKAAKRGTSR 158 (159)
Q Consensus 143 ~c~~~~g~~~k~~~~~ 158 (159)
.|..|+|++...+..|
T Consensus 11 ~C~~C~GsG~~~~~~C 26 (53)
T 2bx9_A 11 ACPKCERAGEIEGTPC 26 (53)
T ss_dssp ECTTTTTSSEETTEEC
T ss_pred cCCCCcceeccCCCCC
Confidence 4556666555444333
No 65
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=26.07 E-value=48 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 031476 17 ILGIRKDASFSDIRSAYHKLA 37 (159)
Q Consensus 17 vLgv~~~as~~eIk~ayr~l~ 37 (159)
|=||+++++.++|++.|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 347999999999999998753
No 66
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.38 E-value=1.2e+02 Score=18.47 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
-+..|..++.-||+... ...+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~-------~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPV-------NFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCC-------CHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45566667778898631 13567889999999999666554433
No 67
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=25.25 E-value=51 Score=21.03 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=24.4
Q ss_pred CCCCCCcCCcchhcCCCCCCCHHHHHHHHHHH
Q 031476 5 GGSNGGSLSYYAILGIRKDASFSDIRSAYHKL 36 (159)
Q Consensus 5 ~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l 36 (159)
|+++|.+.-.| |=+|++.++.++|+..|.+.
T Consensus 1 ~~~~~~~~wL~-VgNL~~~~te~~L~~lF~q~ 31 (89)
T 2wbr_A 1 GAMAWGSSWLL-LKNLTAQIDGPTLRTLCMQH 31 (89)
T ss_dssp CCCCCCCCEEE-EECCCTTCCCHHHHHHHHHH
T ss_pred CCCCCccceEE-EeCCCccCCHHHHHHHHHhh
Confidence 34567766666 88899999999999988764
No 68
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.56 E-value=1.3e+02 Score=18.34 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccc-hhhhhhccc
Q 031476 24 ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE-NKRSMYDAG 81 (159)
Q Consensus 24 as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~-~~R~~YD~~ 81 (159)
.-...++.+|+.+.+...|...... ....+...|.... +|..|.++ .++.+|+.+
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s--~We~vr~~~e~~~-~fkav~~E~eR~~lFeeY 61 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDA--VWEDIRERFVKEP-AFEDITLESERKRIFKDF 61 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTC--CHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHccCH-HHHhcCCHHHHHHHHHHH
Confidence 3456789999999999988775432 2335666666664 79988665 555556553
No 69
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=23.25 E-value=59 Score=25.68 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=33.2
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHH------HHHhCCCC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKL------AMKWHPDR 44 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l------~~~~HPD~ 44 (159)
++.+++.|-.+.||++-+.+++++++...+. +-.+||-.
T Consensus 113 ss~~GsaDvLeaLG~~~~~~~~~~~~~l~~~g~~fl~a~~~hPa~ 157 (329)
T 2elc_A 113 SSRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAM 157 (329)
T ss_dssp TTTCSHHHHHHHTTCCTTCCHHHHHHHHHHHSEEEEEHHHHCGGG
T ss_pred CCcccHHHHHHhCCCCCCCCHHHHHHHHHHCCEEEEEhHHhCHHH
Confidence 3566788999999999999999999999986 67788864
No 70
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=22.48 E-value=86 Score=22.96 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
-+..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 21 ~~~~r~~~k~~~P~~~---------~~eisk~lge~Wk~Ls~~EK~~y~~ 61 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK---------TTELIRRIAQRWRELPDSKKKIYQD 61 (214)
T ss_dssp HHHHHHHHHHHCTTSC---------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHccCHHhhhHHHH
Confidence 4556777778899872 5678889999999999776665544
No 71
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=22.25 E-value=57 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHH------HHHhCCCC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKL------AMKWHPDR 44 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l------~~~~HPD~ 44 (159)
++.+++.|-.+.||++-+.+++++++...+. +-.+||-.
T Consensus 113 ss~~GsaDvLEaLGv~~~~~~e~~~~~l~~~gi~fl~a~~~hPa~ 157 (345)
T 1o17_A 113 SGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAM 157 (345)
T ss_dssp SSSCSHHHHHHHHTBCCCCCHHHHHHHHHHHSEEEEEHHHHCGGG
T ss_pred CCcccHHHHHHhCCCCCCCCHHHHHHHHHHcCEEEEehHHhChHH
Confidence 3566788999999999999999999999886 56788864
No 72
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=22.23 E-value=84 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
-+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 53 ~~e~r~~~k~~~P~~~---------~~eisk~lge~Wk~Ls~~EK~~y~~ 93 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK---------TTELIRRIAQRWRELPDSKKKIYQD 93 (238)
T ss_dssp HHHHHHHHHHHSTTSC---------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556677777889872 5678889999999999776665544
No 73
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.22 E-value=1.1e+02 Score=18.30 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.1
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHH
Q 031476 12 LSYYAILGIRKDASFSDIRSAYHK 35 (159)
Q Consensus 12 ~d~Y~vLgv~~~as~~eIk~ayr~ 35 (159)
...| |=+|+.+++.++|++.|.+
T Consensus 9 ~~l~-V~nLp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 9 NKLY-IGNLSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCEE-EECCCTTCCHHHHHHHHHH
T ss_pred cEEE-EeCCCCCCCHHHHHHHHHH
Confidence 3444 6789999999999988866
No 74
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=22.18 E-value=1.3e+02 Score=17.60 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHHHHhhhccchhhhhhc
Q 031476 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (159)
Q Consensus 30 k~ayr~l~~~~HPD~~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 79 (159)
.+..|..++.-||+. ...+..+.|.+.|..| ..|..|.
T Consensus 15 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~l---~eK~~y~ 52 (73)
T 1wxl_A 15 LNDTRESIKRENPGI---------KVTEIAKKGGEMWKEL---KDKSKWE 52 (73)
T ss_dssp HHHHHHHHHHHSTTC---------CHHHHHHHHHHHHHTC---TTHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhh---HhhHHHH
Confidence 345667777788986 2567888999999999 3444443
No 75
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=21.83 E-value=24 Score=20.27 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=5.9
Q ss_pred eeccCCCcccCC
Q 031476 143 CVNTSKGKAAKR 154 (159)
Q Consensus 143 ~c~~~~g~~~k~ 154 (159)
.|..|+|+|..-
T Consensus 11 ~C~~C~GsG~~i 22 (53)
T 3lcz_A 11 TCPNCNGSGREE 22 (53)
T ss_dssp ECTTTTTSCEET
T ss_pred cCcCCcccccCC
Confidence 455555555433
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.88 E-value=1.3e+02 Score=18.26 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=17.2
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 031476 17 ILGIRKDASFSDIRSAYHKL 36 (159)
Q Consensus 17 vLgv~~~as~~eIk~ayr~l 36 (159)
|=+|+.+++.++|++.|.+.
T Consensus 17 v~nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHhc
Confidence 56889999999999988775
No 77
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=20.82 E-value=68 Score=25.88 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=31.5
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHH------HHHhCCC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKL------AMKWHPD 43 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l------~~~~HPD 43 (159)
++.+++.|-.+.||++-+.+++++++...+. +-.+||-
T Consensus 141 ss~~GsaDvLEaLGv~~~l~~e~~~~~l~~~gi~fl~a~~~hPa 184 (377)
T 3r88_A 141 SSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPS 184 (377)
T ss_dssp SSSCCHHHHHHHTTCCCCCCHHHHHHHHHHHSEEEEEHHHHCGG
T ss_pred CCcccHHHHHHHcCCCcccchHHHHHHHHHhccccccchhhCHH
Confidence 4566788999999999999999999998876 4567774
No 78
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.58 E-value=55 Score=20.67 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 031476 17 ILGIRKDASFSDIRSAYHKLA 37 (159)
Q Consensus 17 vLgv~~~as~~eIk~ayr~l~ 37 (159)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466889999999999988764
No 79
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=20.28 E-value=69 Score=25.48 Aligned_cols=37 Identities=35% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCcCCcchhcCCCCCCCHHHHHHHHHHH------HHHhCCCC
Q 031476 8 NGGSLSYYAILGIRKDASFSDIRSAYHKL------AMKWHPDR 44 (159)
Q Consensus 8 ~~~~~d~Y~vLgv~~~as~~eIk~ayr~l------~~~~HPD~ 44 (159)
.+++.|-.+.||++-+.+++++++...+. +-.+||-.
T Consensus 129 ~~GsaDvLeaLGv~~~~~~~~~~~~l~~~gi~fl~a~~~hPa~ 171 (345)
T 1khd_A 129 LAGSCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGF 171 (345)
T ss_dssp ----CHHHHHTTCCTTCCHHHHHHHHHHHSEEEEEHHHHCGGG
T ss_pred cccHHHHHHhCCCCCCCCHHHHHHHHHHCCEEEEehhhhCHHH
Confidence 56788999999999999999999999885 55778754
No 80
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=20.15 E-value=61 Score=25.72 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCCCCcCCcchhcCCCCCCCHHHHHHHHHHH------HHHhCCCC
Q 031476 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKL------AMKWHPDR 44 (159)
Q Consensus 6 ~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l------~~~~HPD~ 44 (159)
++.+++.|..+.||++-+.+++++++...+. +-.+||-.
T Consensus 120 ss~~GsaD~LeaLG~~~~ls~~~~~~~l~~~g~~fl~a~~~~Pa~ 164 (346)
T 4hkm_A 120 SSKSGSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAM 164 (346)
T ss_dssp -----CHHHHHTTTCCCCCCHHHHHHHHHHHSEEEECHHHHCGGG
T ss_pred CCCcCHHHHHHHcCCCcccCHHHHHHHHHhcCcchhchhhhChhH
Confidence 3466788999999999999999999998875 55677744
Done!