Query 031480
Match_columns 159
No_of_seqs 209 out of 1232
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_Q Ribosomal protein S17 c 100.0 4.2E-74 1.4E-78 455.6 14.7 157 1-159 1-157 (157)
2 3u5c_L RP41, S18, YS12, 40S ri 100.0 4.5E-73 1.5E-77 449.2 14.1 150 3-159 7-156 (156)
3 2zkq_q 40S ribosomal protein S 100.0 5.1E-74 1.7E-78 455.5 8.3 156 1-159 1-158 (158)
4 3iz6_P 40S ribosomal protein S 100.0 4.2E-75 1.4E-79 462.8 -3.4 158 1-158 1-160 (161)
5 3j20_R 30S ribosomal protein S 100.0 1.5E-54 5.2E-59 328.1 12.3 110 36-149 2-111 (113)
6 3bbn_Q Ribosomal protein S17; 100.0 3.8E-42 1.3E-46 268.8 8.6 92 56-148 46-138 (142)
7 1qd7_I S17 ribosomal protein; 100.0 3.2E-35 1.1E-39 214.3 11.4 79 69-148 2-80 (89)
8 3r8n_Q 30S ribosomal protein S 100.0 5.7E-36 2E-40 214.3 5.7 78 69-147 2-79 (80)
9 2vqe_Q 30S ribosomal protein S 100.0 4.8E-34 1.6E-38 213.6 10.1 79 69-148 3-81 (105)
10 2dgy_A MGC11102 protein; EIF-1 54.0 60 0.0021 23.6 7.4 54 71-138 16-74 (111)
11 1d7q_A Translation initiation 49.8 65 0.0022 24.6 7.2 58 71-142 32-93 (143)
12 1jt8_A EIF-1A, probable transl 46.4 23 0.00078 25.5 4.0 52 71-136 21-77 (102)
13 2l9z_A PR domain zinc finger p 30.4 15 0.00052 22.6 0.7 18 48-66 15-32 (39)
14 3sjy_A Translation initiation 29.3 1E+02 0.0036 25.6 6.0 56 68-127 222-286 (403)
15 2vl6_A SSO MCM N-TER, minichro 28.8 39 0.0013 27.1 3.1 25 104-128 211-235 (268)
16 2k4k_A GSP13, general stress p 28.4 1.1E+02 0.0038 21.9 5.3 62 69-144 8-80 (130)
17 1ltl_A DNA replication initiat 25.9 41 0.0014 27.3 2.7 26 104-129 198-223 (279)
18 3ulb_A Target of rapamycin com 23.7 1.5E+02 0.005 22.1 5.2 26 121-146 36-67 (121)
19 2v1q_A SLA1, cytoskeleton asse 22.5 51 0.0018 19.7 2.1 20 109-128 12-31 (60)
20 3e1y_E Eukaryotic peptide chai 21.5 38 0.0013 26.1 1.7 50 68-126 18-69 (204)
21 2a28_A BZZ1 protein; SH3 domai 21.5 42 0.0014 19.8 1.6 21 110-130 11-31 (54)
22 2drm_A Acanthamoeba myosin IB; 21.0 44 0.0015 20.0 1.6 22 108-129 12-33 (58)
23 1jo8_A ABP1P, actin binding pr 20.9 44 0.0015 20.1 1.6 20 110-129 11-30 (58)
24 2bz8_A SH3-domain kinase bindi 20.7 44 0.0015 20.0 1.6 20 110-129 12-31 (58)
25 2lj0_A Sorbin and SH3 domain-c 20.7 40 0.0014 21.6 1.4 22 108-129 15-36 (65)
26 1w1f_A Tyrosine-protein kinase 20.6 49 0.0017 20.2 1.8 23 108-130 16-38 (65)
27 1uti_A GRB2-related adaptor pr 20.5 59 0.002 19.4 2.1 22 108-129 10-31 (58)
28 1k4u_S Phagocyte NADPH oxidase 20.4 61 0.0021 19.7 2.2 22 108-129 14-35 (62)
29 2fpe_A C-JUN-amino-terminal ki 20.2 43 0.0015 20.4 1.4 20 110-129 14-33 (62)
30 1zuu_A BZZ1 protein; SH3 domai 20.1 35 0.0012 20.4 1.0 22 109-130 11-32 (58)
No 1
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=100.00 E-value=4.2e-74 Score=455.63 Aligned_cols=157 Identities=61% Similarity=1.059 Sum_probs=149.5
Q ss_pred CchhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecC
Q 031480 1 MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK 80 (159)
Q Consensus 1 m~~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~K 80 (159)
||+|+|||||||++||+|+++.++++ +++++||++||||||++|+|||||+|||++|||||+|||||++|+|+|+|++
T Consensus 1 m~~q~e~a~qkq~~i~~~~~~~~~~~--~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRgr~l~G~VVS~K 78 (157)
T 2xzm_Q 1 MDTQIQRAYQKQDGVFLNSKKLLAKK--TSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTK 78 (157)
T ss_dssp CTTTTSSSSCCCCSSCCGGGGGGSSC--CSSSCCCCCCCCSSCCCCHHHHTCCCCCTTCSSSSSCCCCSCEEEEEEEECC
T ss_pred CcchhhHhhccCcceeecceehhccc--cccCceeEEecccCCcCChHHhcccccCCCCCCccceeeeeEEEEEEEEEec
Confidence 99999999999999999999987554 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCcccccccC
Q 031480 81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159 (159)
Q Consensus 81 M~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~f 159 (159)
|+|||+|++++++|||+|+|+++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|++++..+.++|||++|
T Consensus 79 MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~~f 157 (157)
T 2xzm_Q 79 MNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF 157 (157)
T ss_dssp STTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEECCCCSSSCCEEEEEECCCCCCSCTTTCCCCC
T ss_pred CCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEcCCCCCcEEEEEEEEEeccccCccchhhhcC
Confidence 9999999999999999999999999999999988999999999999999999999999999999886532378999988
No 2
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=4.5e-73 Score=449.25 Aligned_cols=150 Identities=61% Similarity=1.047 Sum_probs=143.4
Q ss_pred hhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecCCC
Q 031480 3 EQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMN 82 (159)
Q Consensus 3 ~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~KM~ 82 (159)
+|+|||||||++||+|++.. .+++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++|+
T Consensus 7 ~q~e~a~qkq~~i~~~~~~~-----~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsvRgr~l~G~VVS~KMd 81 (156)
T 3u5c_L 7 VQSERAFQKQPHIFNNPKVK-----TSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMH 81 (156)
T ss_dssp SSCSSSCCCCTTCCCCSSSC-----CSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCEEEEEEEEEEEECCST
T ss_pred hhhhhhhccCcceeeccccc-----ccccCceeeeecCcCccCChhhccceeccccCCcccceeEeeEEEEEEEEeecCC
Confidence 39999999999999999953 3678999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCcccccccC
Q 031480 83 RTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159 (159)
Q Consensus 83 KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~f 159 (159)
|||+|+++|++|||+|+|+++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|+++++ +++|||++|
T Consensus 82 KTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~--~~~k~f~~f 156 (156)
T 3u5c_L 82 RTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG--KANKQFAKF 156 (156)
T ss_dssp TEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEEEEEETTEEEEEEEECCCCS--SSGGGCCCC
T ss_pred CeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEecccCCCcEeEEEEEEEecCC--CcccccccC
Confidence 999999999999999999999999999999779999999999999999999999999999999953 479999998
No 3
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=5.1e-74 Score=455.54 Aligned_cols=156 Identities=61% Similarity=1.065 Sum_probs=73.3
Q ss_pred Cch-hhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEec
Q 031480 1 MAE-QTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSA 79 (159)
Q Consensus 1 m~~-q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~ 79 (159)
||+ |+|||||||++||+|+++.+++++++++..||++||||||++|+|||||+|||++|||||+|||||++|.|+|+|+
T Consensus 1 m~~~q~e~afqkq~~i~~~~~~~~~~~~~~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRGr~l~G~VVS~ 80 (158)
T 2zkq_q 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKM 80 (158)
T ss_dssp ----------------------------------------------------------------------CEEEEEEEEC
T ss_pred CcchhhhhhhccCcceeecceehhccccccccCceEEEecccCccCChHHhcccccCCCCCCccccceeeEEEEEEEEEc
Confidence 888 9999999999999999999877777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC-CCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCccccccc
Q 031480 80 KMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF-RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 158 (159)
Q Consensus 80 KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~-~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~ 158 (159)
+|+|||+|++++++|||+|+|+++|+++|+|||+||| +|++||+|+|+|||||||||+|+|++|+++ +|++|||++
T Consensus 81 KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~RPLSKtKrw~Vv~I~~~---~~~~k~f~~ 157 (158)
T 2zkq_q 81 KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQFQK 157 (158)
T ss_dssp SSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEEC------------
T ss_pred cCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEccccCCcEEEEEEEEecC---CCcchhhhc
Confidence 9999999999999999999999999999999997788 899999999999999999999999999976 347899998
Q ss_pred C
Q 031480 159 M 159 (159)
Q Consensus 159 f 159 (159)
|
T Consensus 158 f 158 (158)
T 2zkq_q 158 F 158 (158)
T ss_dssp -
T ss_pred C
Confidence 7
No 4
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-75 Score=462.76 Aligned_cols=158 Identities=96% Similarity=1.512 Sum_probs=84.1
Q ss_pred CchhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecC
Q 031480 1 MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK 80 (159)
Q Consensus 1 m~~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~K 80 (159)
||+|+|+|||||++||+|+++++++++.+++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++
T Consensus 1 ~~~q~e~a~qkq~~i~~~~k~~~~~~~~~~~~~r~~k~iGl~~k~P~~a~~g~y~D~kCPf~G~lsiRgril~G~VVS~K 80 (161)
T 3iz6_P 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAK 80 (161)
T ss_dssp ---------------------------------------CCCCCCEEEECCCCSSSSCCSEEEEEEEEEEECTTTCCEEE
T ss_pred CcchhhhhhccCccceecceeccccccccccCceEEEecCcCCCCChHHhcCcccccCCCccceeEEeeEEEEEEEEecc
Confidence 89999999999999999999998777788899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCC--Cccccccc
Q 031480 81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSG--GAKKAFTA 158 (159)
Q Consensus 81 M~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~--~~~k~f~~ 158 (159)
|+|||+|+++|++|||+|+||++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|+++++.+ +.+|+|..
T Consensus 81 MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~~~~~~~~~~~k~f~~ 160 (161)
T 3iz6_P 81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160 (161)
T ss_dssp EEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC------------------------------------
T ss_pred CCCeEEEEEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEeccCCCCcEeEEEEEEEecCcccccccchhccc
Confidence 9999999999999999999999999999999966999999999999999999999999999999997653 56899974
No 5
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-54 Score=328.14 Aligned_cols=110 Identities=42% Similarity=0.761 Sum_probs=104.7
Q ss_pred eeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCC
Q 031480 36 WKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPC 115 (159)
Q Consensus 36 ~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~ 115 (159)
|+||||||++|++ +|+|++|||||||||||++|+|+|+|+||+|||+|+++|++|||+|+||++++++|+|||+||
T Consensus 2 m~~igl~~~~p~~----~~~d~~cPf~G~~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~ 77 (113)
T 3j20_R 2 MRDIGLRVQPPAE----KCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPC 77 (113)
T ss_dssp CCCCCTTCCCCSS----CCCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTT
T ss_pred chhcCCCCCCCcc----cccCCCCCCcceeeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCC
Confidence 5899999999974 566999999999999999999999999999999999999999999999999999999999669
Q ss_pred CCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCC
Q 031480 116 FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 149 (159)
Q Consensus 116 ~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~ 149 (159)
|+|++||+|+|+|||||||||+|+|++|++++.+
T Consensus 78 n~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~~ 111 (113)
T 3j20_R 78 INAKVGDKVLIAETRPLSKTKHFVVVAVLERAEE 111 (113)
T ss_dssp SCCCTTSEEEEEECSCSSSSEEEEEEEECCCCCC
T ss_pred CCCCCCCEEEEEecccCCCcEeEEEEEEEecccc
Confidence 9999999999999999999999999999998643
No 6
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.8e-42 Score=268.79 Aligned_cols=92 Identities=28% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCCCCceeeeeeec-eEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCC
Q 031480 56 DKKCPFTGTVSIRG-RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134 (159)
Q Consensus 56 D~kcPf~g~~sirg-~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSK 134 (159)
|++|||||+|+||| ++|.|+|+|+||+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||
T Consensus 46 ~~~cP~~G~lsvrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHD-e~n~~kvGD~V~I~E~RPLSK 124 (142)
T 3bbn_Q 46 PNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHD-PDNQFKVGDVVRLEKSRPISK 124 (142)
T ss_dssp --------------CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEEC-TTCCCCTTEEEEEEECCCSSS
T ss_pred CCcCCCCccccccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEEC-CCCCCCCCCEEEEEEccCCCC
Confidence 99999999999999 9999999999999999999999999999999999999999999 677999999999999999999
Q ss_pred eeeEEEEEEeecCC
Q 031480 135 TVRFNVLKVIPAGS 148 (159)
Q Consensus 135 tK~f~V~~Ii~~~~ 148 (159)
+|+|+|++|++++.
T Consensus 125 tKrw~VveIveka~ 138 (142)
T 3bbn_Q 125 TKSFVALPVIARAA 138 (142)
T ss_dssp SCCEEECCCSEEEC
T ss_pred cEEEEEEEEEeccc
Confidence 99999999998854
No 7
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=3.2e-35 Score=214.31 Aligned_cols=79 Identities=29% Similarity=0.343 Sum_probs=75.7
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCC
Q 031480 69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 148 (159)
Q Consensus 69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~ 148 (159)
.++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus 2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~ 80 (89)
T 1qd7_I 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHD-EHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV 80 (89)
T ss_pred cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeC-CccCCCCCCEEEEEEcccCCCCEEEEEEEEEeece
Confidence 48999999999999999999999999999999999999999999 67799999999999999999999999999998763
No 8
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=5.7e-36 Score=214.33 Aligned_cols=78 Identities=31% Similarity=0.441 Sum_probs=75.4
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecC
Q 031480 69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 147 (159)
Q Consensus 69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~ 147 (159)
.++|.|+|+|++|+|||+|+++++++||+|+||++++++|+||| |+|+|++||+|+|+|||||||||+|+|++|++++
T Consensus 2 ~r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHD-e~n~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 2 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHD-ENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp CSCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBC-GGGCCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred CeEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEEC-CCCCCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 37899999999999999999999999999999999999999999 8999999999999999999999999999999874
No 9
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=4.8e-34 Score=213.55 Aligned_cols=79 Identities=34% Similarity=0.433 Sum_probs=75.8
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCC
Q 031480 69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 148 (159)
Q Consensus 69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~ 148 (159)
.++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus 3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~ 81 (105)
T 2vqe_Q 3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHD-PEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR 81 (105)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEEC-TTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEEC-CCCCCCCCCEEEEEEcccCCCCEEEEEEEEeeccc
Confidence 47999999999999999999999999999999999999999999 67899999999999999999999999999998853
No 10
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.95 E-value=60 Score=23.55 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.1
Q ss_pred EEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeeeecCC-CeeeE
Q 031480 71 ILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLS-KTVRF 138 (159)
Q Consensus 71 il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~----~~kvGD~V~I~ecRPLS-KtK~f 138 (159)
...|+|+..-.+....|..+- -..++||.|..+ -+..||.|++. .+|.. ++|-=
T Consensus 16 e~~g~V~~~lgn~~f~V~l~n-------------G~~~la~i~GK~Rk~IwI~~GD~VlVe-~~~yd~~~kg~ 74 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQ-------------GQRFLVSMPSKYRKNIWIKRGDFLIVD-PIEEGEKVKAE 74 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTT-------------SCEEEEECCTTCCSCCCCCSSCEEEEE-ECSSCSSCCEE
T ss_pred eEEEEEEEeCCCCEEEEEeCC-------------CCEEEEEechhhcccEEEcCCCEEEEE-ecccCCcceEE
Confidence 467899998888877776432 245778885554 38899999996 56776 55443
No 11
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=49.79 E-value=65 Score=24.59 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=40.1
Q ss_pred EEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeeeecCCCeeeEEEEE
Q 031480 71 ILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLSKTVRFNVLK 142 (159)
Q Consensus 71 il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~----~~kvGD~V~I~ecRPLSKtK~f~V~~ 142 (159)
...|+|+....+....|..+- -..++||.|.-+ -+..||.|++. .+|...+|-=++..
T Consensus 32 e~~g~V~e~lgn~~f~V~l~n-------------G~~~La~I~GKmRk~IwI~~GD~VlVe-~~~yd~~KG~Ii~r 93 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFD-------------GVKRLCHIRGKLRKKVWINTSDIILVG-LRDYQDNKADVILK 93 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETT-------------TEEEEEECCSGGGGSCCCCTTCEEEEE-CSSSSSSCCEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCC-------------CCEEEEEecccceeeEEecCCCEEEEe-eccCCCCeEEEEEE
Confidence 478999998888877776432 234677875443 38899999996 46888777543333
No 12
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=46.40 E-value=23 Score=25.52 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=37.3
Q ss_pred EEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeeeecCC-Cee
Q 031480 71 ILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLS-KTV 136 (159)
Q Consensus 71 il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~----~~kvGD~V~I~ecRPLS-KtK 136 (159)
...|+|+..-.+....|..+- -..++||.|..+ -+..||.|++. -+|.. .+|
T Consensus 21 e~~g~V~~~lgn~~~~V~l~n-------------G~~~la~i~GKmRk~IwI~~GD~VlVe-~~~yd~~~K 77 (102)
T 1jt8_A 21 EILGIIEQMLGASRVRVRCLD-------------GKTRLGRIPGRLKNRIWVREGDVVIVK-PWEVQGDQK 77 (102)
T ss_dssp CEEEEEECSSCSSEEEEEEET-------------TEEEEEECCHHHHHHHCCCSCEEEEEC-CBCCTTSEE
T ss_pred EEEEEEEEEcCCCEEEEEECC-------------CCEEEEEEcccceeeEEecCCCEEEEE-eccCCCCce
Confidence 468999998888888776442 235678874333 38899999995 66776 666
No 13
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=30.36 E-value=15 Score=22.61 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=12.1
Q ss_pred hhhcccccCCCCCceeeee
Q 031480 48 EAIEGTYIDKKCPFTGTVS 66 (159)
Q Consensus 48 ~~~~~~yiD~kcPf~g~~s 66 (159)
|.|+-.|+| .||=||-+.
T Consensus 15 E~C~~~~~~-~Cp~HGP~~ 32 (39)
T 2l9z_A 15 TLCDRAYPS-DCPEHGPVT 32 (39)
T ss_dssp GGGTEEESS-SBTTTBSCS
T ss_pred HHHhhhchh-hchhcCCCc
Confidence 456644555 599999663
No 14
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=29.31 E-value=1e+02 Score=25.61 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=36.5
Q ss_pred eceEEEEEEEec--CCCCeEEEEEeEE-------EeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEe
Q 031480 68 RGRILAGTCHSA--KMNRTIIVRRNYL-------HFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127 (159)
Q Consensus 68 rg~il~G~VvS~--KM~KTvvV~v~~~-------~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ 127 (159)
+|.+..|+|.+- +-.-++.+.-... .|.| ...+-+.+.+|+.+..++..||.|.|.
T Consensus 222 ~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 222 KGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEP----IFTKISSIRFGDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEE----EEEEEEEEEETTEEESEECSSSCEEEE
T ss_pred cCcEEEEEEEeCEEecCCEEEEeCCccccccccccccc----ccEEEEEEEECCEEcCEEeCCCEEEEE
Confidence 677888888875 3444555542221 1222 244667778887677889999999984
No 15
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=28.82 E-value=39 Score=27.06 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=18.4
Q ss_pred eeeeEEEEcCCCCCCCCCCEEEEee
Q 031480 104 RHSNIPAHISPCFRVKEGDHVIIGQ 128 (159)
Q Consensus 104 r~kk~~vHd~p~~~~kvGD~V~I~e 128 (159)
|+-.+.++|+=...|++||.|+|.-
T Consensus 211 rsi~v~l~~dLvd~~~PGDrV~vtG 235 (268)
T 2vl6_A 211 RQLEIILEDDLVDSARPGDRVKVTG 235 (268)
T ss_dssp CEEEEEEEGGGTTSSCTTCEEEEEE
T ss_pred cEEEEEEccCccCcccCCCEEEEEE
Confidence 5555666665566899999999765
No 16
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=28.42 E-value=1.1e+02 Score=21.94 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=37.2
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcC---------CCCCCCCCCEEE--EeeeecCCCeee
Q 031480 69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHIS---------PCFRVKEGDHVI--IGQCRPLSKTVR 137 (159)
Q Consensus 69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~---------p~~~~kvGD~V~--I~ecRPLSKtK~ 137 (159)
|.++.|+|++.. +--+.|..+. .+ .-++|.+ +...+++||.|. |.+..+-.....
T Consensus 8 G~iv~G~V~~i~-~~G~FV~l~~-----~~--------~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~ 73 (130)
T 2k4k_A 8 GSVYTGKVTGLQ-AYGAFVALDE-----ET--------QGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKIS 73 (130)
T ss_dssp TCEEEEEEEEEE-TTEEEEEEET-----TE--------EEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEE
T ss_pred CCEEEEEEEEEe-CCeEEEEECC-----Cc--------EEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEE
Confidence 778999998873 4566666531 11 1233332 234599999976 555666566666
Q ss_pred EEEEEEe
Q 031480 138 FNVLKVI 144 (159)
Q Consensus 138 f~V~~Ii 144 (159)
+.+..+.
T Consensus 74 LSlk~~~ 80 (130)
T 2k4k_A 74 LSIRATQ 80 (130)
T ss_dssp EESHHHH
T ss_pred EEEeecc
Confidence 6555443
No 17
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=25.91 E-value=41 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=18.8
Q ss_pred eeeeEEEEcCCCCCCCCCCEEEEeee
Q 031480 104 RHSNIPAHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 104 r~kk~~vHd~p~~~~kvGD~V~I~ec 129 (159)
|+-.+.++|+=...|++||.|+|.-.
T Consensus 198 rsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 198 RQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp CEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred eEEEEEEcccccCccCCCCEEEEEEE
Confidence 55556666655568999999997653
No 18
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=23.66 E-value=1.5e+02 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=15.0
Q ss_pred CCEEEEeee--e----cCCCeeeEEEEEEeec
Q 031480 121 GDHVIIGQC--R----PLSKTVRFNVLKVIPA 146 (159)
Q Consensus 121 GD~V~I~ec--R----PLSKtK~f~V~~Ii~~ 146 (159)
||.|-|.+. . .-+||.+|.+..|+..
T Consensus 36 GdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~ 67 (121)
T 3ulb_A 36 GDYIYIVPPEGRIHWHDNVKTKSLHISQVVLV 67 (121)
T ss_dssp TTEEEEECCC-------CCCCEEEEGGGEEEE
T ss_pred CceEEEecCCCCcccccCCcEEEEEEeeEEEE
Confidence 666666643 1 1357777776666554
No 19
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=22.46 E-value=51 Score=19.69 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=14.7
Q ss_pred EEEcCCCCCCCCCCEEEEee
Q 031480 109 PAHISPCFRVKEGDHVIIGQ 128 (159)
Q Consensus 109 ~vHd~p~~~~kvGD~V~I~e 128 (159)
.+.++.....+.||+|.|-+
T Consensus 12 ~~~~~~eLs~~~Gd~i~v~~ 31 (60)
T 2v1q_A 12 MAESQDELTIKSGDKVYILD 31 (60)
T ss_dssp CCCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCCccCCCCCEEEEEe
Confidence 34444556799999999976
No 20
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=21.53 E-value=38 Score=26.13 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred eceEEEEEEEec--CCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEE
Q 031480 68 RGRILAGTCHSA--KMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVII 126 (159)
Q Consensus 68 rg~il~G~VvS~--KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I 126 (159)
.|.+..|+|.+- +-.-++.+. |- ....+-+.+..|+.+..++..||.|.|
T Consensus 18 ~G~v~~G~v~~G~i~~Gd~v~i~-------P~--~~~~~V~~I~~~~~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 18 MGTVVLGKLESGSICKGQQLVMM-------PN--KHNVEVLGILSDDVETDTVAPGENLKI 69 (204)
T ss_dssp SSEEEEEECCBSCEESSCCEEET-------TT--TEEEEEEEECSSSSCBSEECTTSEEEE
T ss_pred CCEEEEEEEecCEEECCCEEEEC-------CC--CCEEEEEEEEECCEEeEEECCCCEEEE
Confidence 367777777764 222333332 11 022355666677756677889999887
No 21
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=21.52 E-value=42 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=14.7
Q ss_pred EEcCCCCCCCCCCEEEEeeee
Q 031480 110 AHISPCFRVKEGDHVIIGQCR 130 (159)
Q Consensus 110 vHd~p~~~~kvGD~V~I~ecR 130 (159)
+.++.....+.||+|.|.+..
T Consensus 11 ~~~~~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 11 AQGDDEISIDPGDIITVIRGD 31 (54)
T ss_dssp CCSTTBCCBCTTCEEEEEECC
T ss_pred cCCCCCccCCCCCEEEEEEec
Confidence 334345678999999997643
No 22
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.99 E-value=44 Score=19.96 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=15.6
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 031480 108 IPAHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 108 ~~vHd~p~~~~kvGD~V~I~ec 129 (159)
|.+.++.....+.||+|.|.+.
T Consensus 12 y~~~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 12 YDAQTGDELTFKEGDTIIVHQK 33 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCcCCCCCCEEEEEEe
Confidence 3344445567999999999765
No 23
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=20.87 E-value=44 Score=20.07 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=14.6
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 031480 110 AHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 110 vHd~p~~~~kvGD~V~I~ec 129 (159)
+.++.....+.||+|.|-+.
T Consensus 11 ~~~~~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 11 AAEDNELTFVENDKIINIEF 30 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCcccCCCCEEEEEEe
Confidence 33444567899999999774
No 24
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=20.70 E-value=44 Score=20.04 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=14.6
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 031480 110 AHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 110 vHd~p~~~~kvGD~V~I~ec 129 (159)
+.++.....+.||+|.|-+.
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 12 AQHDDELTISVGEIITNIRK 31 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCcCEeeECCCCEEEEEEe
Confidence 33444567999999999774
No 25
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=20.69 E-value=40 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=15.8
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 031480 108 IPAHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 108 ~~vHd~p~~~~kvGD~V~I~ec 129 (159)
|.+.++.....+.||+|.|-+.
T Consensus 15 y~a~~~~ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 15 YIPQNDDELELRDGDIVDVMEK 36 (65)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEE
T ss_pred ECCCCcCCcCCCCCCEEEEeEe
Confidence 3344445668999999999764
No 26
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=20.63 E-value=49 Score=20.21 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=16.3
Q ss_pred EEEEcCCCCCCCCCCEEEEeeee
Q 031480 108 IPAHISPCFRVKEGDHVIIGQCR 130 (159)
Q Consensus 108 ~~vHd~p~~~~kvGD~V~I~ecR 130 (159)
|.+.++.....+.||+|.|-+..
T Consensus 16 y~~~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 16 YDGIHPDDLSFKKGEKMKVLEEH 38 (65)
T ss_dssp BCCCSSSCCCBCTTCEEEEEEEC
T ss_pred ECCcCCCcCCCCCCCEEEEEEcC
Confidence 33444456679999999997754
No 27
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=20.51 E-value=59 Score=19.39 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=15.7
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 031480 108 IPAHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 108 ~~vHd~p~~~~kvGD~V~I~ec 129 (159)
|.+.++.....+.||+|.|-+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 10 FEALEEDELGFRSGEVVEVLDS 31 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCCCCEEEEEEE
Confidence 3344445567899999999774
No 28
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.36 E-value=61 Score=19.67 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 031480 108 IPAHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 108 ~~vHd~p~~~~kvGD~V~I~ec 129 (159)
|.+.++.....+.||+|.|-+.
T Consensus 14 y~~~~~~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 14 YEATQPEDLEFQEGDIILVLSK 35 (62)
T ss_dssp BCCCSSSBCCBCSSCEEEEEEE
T ss_pred CCcCCCCCccCCCCCEEEEEEe
Confidence 3444445567899999999875
No 29
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=20.23 E-value=43 Score=20.41 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=14.0
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 031480 110 AHISPCFRVKEGDHVIIGQC 129 (159)
Q Consensus 110 vHd~p~~~~kvGD~V~I~ec 129 (159)
+.++.....+.||+|.|.+.
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 14 PRHEDELELEVDDPLLVELQ 33 (62)
T ss_dssp CSSTTBCCBCTTCEEEEEEE
T ss_pred ccCcCcCcCCCCCEEEEEEe
Confidence 33444567899999999643
No 30
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=20.06 E-value=35 Score=20.38 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=15.5
Q ss_pred EEEcCCCCCCCCCCEEEEeeee
Q 031480 109 PAHISPCFRVKEGDHVIIGQCR 130 (159)
Q Consensus 109 ~vHd~p~~~~kvGD~V~I~ecR 130 (159)
.+.++....++.||+|.|-+..
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 11 VQKDDDEITITPGDKISLVARD 32 (58)
T ss_dssp CCCSTTBCCBCTTCCEEEEECC
T ss_pred CCcCCCcccCCCCCEEEEeEcC
Confidence 3444455679999999997643
Done!