BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031481
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 145 bits (367), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP D
Sbjct: 9 SVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
YP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RT
Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRT 109
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 14 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
AT+ A++++ V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct: 10 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68
Query: 74 GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
GT+YE L YKLSL FP YP+ P VKF T C+HPNVD GNI LDIL++KWS+ YD
Sbjct: 69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDV 128
Query: 134 RT 135
RT
Sbjct: 129 RT 130
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL + SA P G+ IF W TI G + Y+G + L + FP+DYPF
Sbjct: 7 RRIQKELREIQQDPP-CNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
K P+V F T +HPN+++ G ICLDIL+D+WS A
Sbjct: 66 KAPRVTFMTKVYHPNINKNGVICLDILKDQWSPA 99
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
S ++R+ KEL L SA P G+ ++ W +I G + Y G + LS+ FP D
Sbjct: 2 SSSKRIAKELSDLERDPP-TSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
YPFKPP++ F T +HPN++ GNICLDIL+D+WS A
Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPA 97
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+R+ +EL L G D SA P G+ +F W TI G + Y G + LS+ FP DY
Sbjct: 4 KRINRELADL---GKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
PFKPP+V F T +HPN++ G+ICLDIL+D+WS A
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPA 96
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 9 KRIQKELQDLQRDPP-AQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 68 KPPKVAFTTKIYHPNINSNGSICLDILRSQWSPA 101
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 22 KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP++ F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 81 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 114
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP++ F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 65 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 98
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
++ +R+QKEL + + SA P+G++I+ W TI G G++YEG + L + F
Sbjct: 2 STSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
DYPFKPP+V F T +H N++ G ICLDIL+D WS A
Sbjct: 61 DYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 98
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+R+QKEL L G D SA P G+ +F W TI G + Y+G + L++ FP DY
Sbjct: 7 KRIQKELQDL---GRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
PFKPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 99
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 10 KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP++ F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 102
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+ +R+ KE +L G+ A P E+ + I G GT YEG +YKL L P Y
Sbjct: 2 IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
P +PP+V+F T +HPN+D+ G ICLDIL+DKWS A RT
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRT 101
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+ +R+ KE +L G+ A P E+ + I G GT YEG +YKL L P Y
Sbjct: 2 IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
P +PP+V+F T +HPN+D+ G ICLDIL+DKWS A RT
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRT 101
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
S +R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP D
Sbjct: 3 SALKRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
YPFKPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 62 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 26 SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYK 85
S N+ ++ +R+QKEL + + SA P+G++I+ W TI G G++YEG +
Sbjct: 40 SKNSKLLSTSAKRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF 98
Query: 86 LSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
L + F +YPFKPP+V F T +H N++ G ICLDIL+D WS A
Sbjct: 99 LDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 143
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + + Y G + L++ FP DYPF
Sbjct: 24 KRINKELNDLS-KDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G ICLDIL+D+WS A
Sbjct: 83 KPPKVNFTTKIYHPNINSQGAICLDILKDQWSPA 116
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 14 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 73 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 106
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 4 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 22 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 81 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 114
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL S + SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 14 KRINKEL-SDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 73 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 106
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 3 KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 62 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 95
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 9 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 68 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 101
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 12 KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 71 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 104
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
RLQKEL + + A + + F W+G I+G +GT YEG + L++ P DYP+
Sbjct: 27 RLQKELKDIENENVQ-EIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 98 PPQVKFETMCFHPNV-DQYGNICLDILQDKWSSAYDCRT 135
PP++KF T +HPN+ Q G ICLD+L+++WS A RT
Sbjct: 86 PPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRT 124
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
TT +RL ++ L GVS P ++I TW I G + T +E ++KLSL F
Sbjct: 5 TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
+YP KPP VKF + FHPNV G+ICLDILQ++WS YD
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDV 105
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
TT +RL ++ L GVS P ++I TW I G + T +E ++KLSL F
Sbjct: 2 TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
+YP KPP VKF + FHPNV G+ICLDILQ++WS YD
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDV 102
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+T +RL ++ L G+S P+ +I W I G T ++G ++KLSL+F
Sbjct: 2 STPARKRLMRDFKRLQQDPP-AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
DYP KPP V+F + FHPN+ G+ICLDILQ++WS YD
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDV 102
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +W A
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWGPA 98
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLD L+ +WS A
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDALRSQWSPA 98
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W T G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+ICLDIL+ +WS A
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
++R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DY
Sbjct: 1 ASKRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 59
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
PFKPP+V F T +HPN++ G+I LDIL+ +WS A
Sbjct: 60 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 95
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+T +RL ++ L +GVS P +I W I G +GT +E ++KL + F
Sbjct: 2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
+YP KPP V+F + FHPNV G+ICLDILQ++WS YD +
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSS 104
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 7 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+I LDIL+ +WS A
Sbjct: 66 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 99
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 4 KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+I LDIL+ +WS A
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 96
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+T +RL ++ M GVSA P +++ W I G T YE +++L L F
Sbjct: 2 STPARRRLMRDF-KRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
+YP KPP VKF + FHPNV G ICLDILQ++W+ YD
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDV 102
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 22 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+I LDIL+ +WS A
Sbjct: 81 KPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPA 114
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L A P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 10 KRIQKELSDLQRDPP-AHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP++ F T +HPN++ G+I LDIL+ +WS A
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPA 102
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HPN++ G+I LDIL+ +WS A
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 98
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 54 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 112
GVSA G I W G I G GT YEG + L + P DYP+ PP++KF T +HPN+
Sbjct: 64 GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
Query: 113 DQYGNICLDILQDKWSSAYDCRT 135
Q G ICLDIL+ +WS A RT
Sbjct: 124 SQTGAICLDILKHEWSPALTIRT 146
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+ + +R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P
Sbjct: 3 SAGLPRRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
+YP P+V+F T +HPNVD+ G ICLDIL+DKWS A RT
Sbjct: 62 EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRT 105
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L A P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 4 KRIHKELNDLARDPP-AQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA 130
KPP+V F T +HP ++ G+I LDIL+ +WS A
Sbjct: 63 KPPKVAFTTRIYHPAINSNGSISLDILRSQWSPA 96
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 4 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT
Sbjct: 63 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRT 101
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 9 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 67
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT
Sbjct: 68 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRT 106
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 6 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT
Sbjct: 65 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRT 103
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 11 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 69
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT
Sbjct: 70 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRT 108
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 2 ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
DYP + P+V+F T +HPN+D+ G ICLD+L+ WS A RT
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRT 103
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 3 AASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
DYP + P+V+F T +HPN+D+ G ICLD+L+ WS A RT
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRT 105
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 2 ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
DYP + P+V+F T +HPN+D+ G I LD+L+ WS A RT
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRT 103
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 36 TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 8 VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 64
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRT 135
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT
Sbjct: 65 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRT 110
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 36 TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 7 VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 63
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRT 135
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT
Sbjct: 64 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRT 109
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 36 TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 10 VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 66
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRT 135
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT
Sbjct: 67 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRT 112
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 35 VTQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLR 89
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIK 114
Query: 90 FPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRT 135
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT
Sbjct: 115 IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRT 161
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 35 VTQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLR 89
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 22 AVQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIK 78
Query: 90 FPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRT 135
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT
Sbjct: 79 IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRT 125
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 2 ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
DYP + P+V+F T +HP +D+ G I LD+L+ WS A RT
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRT 103
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 33 TSVTQRLQKELMSLM------MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKL 86
S+ +RLQKEL++L M+ + V SI WI +EG GT+YEG ++L
Sbjct: 21 ASMQKRLQKELLALQNDPPPGMTLNEKSVQ-----NSITQWIVDMEGAPGTLYEGEKFQL 75
Query: 87 SLRFPLDYPFKPPQVKF--ETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
+F YPF PQV F E + HP+V G+ICL IL + WS A ++
Sbjct: 76 LFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQS 126
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
S +R+ KE+ ++ F I GT G GT YEG + + + P++
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 94 YPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWS 128
YPFKPP+++F+T +HPN+ G ICLDIL++ WS
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWS 96
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
+S +R+ KE+ ++ F I GT G GT YEG + + + P+
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWS 128
+YPFKPP+++F+T +HPN+ G ICLDIL++ WS
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWS 97
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 39 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98
L+K+L + D + + I+ W + G T+YEG +K L FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 99 PQVKFETMCFHPNVDQYGNICLDILQ----DKW 127
P++KF + +HPN+D+ GN+C+ IL DKW
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKW 100
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 39 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98
L+++L L + + + + ++ W I G T+YEG +K L FP DYP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 99 PQVKFETMCFHPNVDQYGNICLDILQDKWSSAY 131
P++KF T +HPNVD+ G++C+ IL + Y
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKY 114
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 54 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113
G++A P E + W IEG + ++++GL ++L++ F +Y + PP VKF T+ FHPNVD
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 114 QY-GNICLDILQ--DKWSSAY 131
+ G C+D L +KW++ Y
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNY 122
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
RL++EL ++ + G++ + + + + I GG T YE +KL + P YPF+
Sbjct: 8 RLKREL-HMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 66
Query: 98 PPQVKFETMCFHPNVDQYGNICLDILQ 124
PPQ++F T +HPN+D G ICLD+L+
Sbjct: 67 PPQIRFLTPIYHPNIDSAGRICLDVLK 93
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+ + + KE+ +L D G+ FP E + TIEG +GT Y G +++ L D+
Sbjct: 14 IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCR 134
P PP+ F T FHPNV G IC+++L+ W++ R
Sbjct: 73 PASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIR 112
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+ + ++RL KEL + G + + ++ TW G I Y+ ++++ + FP
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPD-NPPYDKGAFRIEINFP 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSA 130
+YPFKPP++ F+T +HPN+D+ G +CL ++ + W A
Sbjct: 61 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 100
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ ++RL KEL + G + + ++ TW G I Y+ ++++ + FP +
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPD-NPPYDKGAFRIEINFPAE 60
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSA 130
YPFKPP++ F+T +HPN+D+ G +CL ++ + W A
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 98
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114
V+ EG+ ++ W I G T YEG +K L+FP+DYP+ PP +F T +HPN+ +
Sbjct: 29 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87
Query: 115 YGNICLDILQ-------------DKWSSAYDCRT 135
G++C+ IL ++W+ + RT
Sbjct: 88 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRT 121
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114
V+ EG+ ++ W I G T YEG +K L+FP+DYP+ PP +F T +HPN+ +
Sbjct: 26 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 84
Query: 115 YGNICLDILQ-------------DKWSSAYDCRT 135
G++C+ IL ++W+ + RT
Sbjct: 85 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRT 118
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 123 LQD 125
L++
Sbjct: 100 LEE 102
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 123 LQD 125
L++
Sbjct: 100 LEE 102
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 123 LQD 125
L++
Sbjct: 98 LEE 100
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 123 LQD 125
L++
Sbjct: 100 LEE 102
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 123 LQD 125
L++
Sbjct: 99 LEE 101
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 123 LQD 125
L++
Sbjct: 97 LEE 99
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 118 ICLDILQD 125
+CL IL++
Sbjct: 94 VCLSILEE 101
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 123 LQD 125
L++
Sbjct: 102 LEE 104
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 123 LQD 125
L++
Sbjct: 100 LEE 102
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 73 GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAY 131
G +GT YEG +K+ + P YPFK P + F FHPN+D+ G +CLD++ W++ Y
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 132 DC 133
D
Sbjct: 119 DL 120
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
TS+T++ Q + L+M+G DL ++ S + G GT YEG +K+ + P
Sbjct: 2 TSLTRK-QCDFTKLIMAGYDLELN----NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPD 56
Query: 93 DYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAY 131
DYPF P + F HPNVD+ G++CLD++ W+ Y
Sbjct: 57 DYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
+ + +RL KEL L+ G+ A P+ E+ IF W I+G T Y + L F
Sbjct: 2 SKTAQKRLLKELQQLIKDSPP-GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 124
P DYP PP++ F HPN+ G +C+ IL
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILH 94
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHP V G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 123 LQD 125
L++
Sbjct: 100 LEE 102
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 61 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICL 120
G + W I G T +EG YKL++ FP +YP +PP+ +F FHPNV G +CL
Sbjct: 41 GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCL 100
Query: 121 DILQDK--WSSA 130
IL ++ W A
Sbjct: 101 SILNEEEGWKPA 112
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ +RL E L ++ + V+ E+ F W I G + T +E + L FPLD
Sbjct: 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 62
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQ 124
YP PP+++F FHPN+ G +C+ IL
Sbjct: 63 YPLSPPKMRFTCEMFHPNIYPDGRVCISILH 93
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ +RL E L ++ + V+ E+ F W I G + T +E + L FPLD
Sbjct: 6 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 65
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQ 124
YP PP+++F FHPN+ G +C+ IL
Sbjct: 66 YPLSPPKMRFTCEMFHPNIYPDGRVCISILH 96
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ +RL E L ++ + V+ E+ F W I G + T +E + L FPLD
Sbjct: 7 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 66
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQ 124
YP PP+++F FHPN+ G +C+ IL
Sbjct: 67 YPLSPPKMRFTCEMFHPNIYPDGRVCISILH 97
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD 125
W+ +G +GT YE ++ L ++ P DYPFK P + F HPNVD+ G++CLD++
Sbjct: 41 WV-EFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 126 KWSSAY 131
W+ Y
Sbjct: 100 TWTPMY 105
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
+ R+ KEL L + + ++ W + + Y ++ L + FP +YP
Sbjct: 3 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYP 61
Query: 96 FKPPQVKFETMCFHPNVDQYGNICLDIL 123
FKPP +KF T +HPNVD+ G ICL I+
Sbjct: 62 FKPPMIKFTTKIYHPNVDENGQICLPII 89
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
+ R+ KEL L + + ++ W + + Y ++ L + FP +YP
Sbjct: 6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYP 64
Query: 96 FKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWS 128
FKPP +KF T +HPNVD+ G ICL I+ + W
Sbjct: 65 FKPPMIKFTTKIYHPNVDENGQICLPIISSENWK 98
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ +RL E L ++ + V+ E+ F W I G + T +E + L FPLD
Sbjct: 9 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 68
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQ 124
YP PP+++F FHPN+ G +C+ IL
Sbjct: 69 YPLSPPKMRFTCEMFHPNIYPDGRVCISILH 99
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G + L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 123 LQD 125
L++
Sbjct: 97 LEE 99
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
QRLQ+E G A P ++ + W I G +GT + G Y +++ +P
Sbjct: 7 QRLQEERKK-WRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD 125
+YP KPP+VKF +HPNV G ICL IL +
Sbjct: 66 NEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNE 99
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
QRLQ+E G A P ++ + W I G +GT + G Y +++ +P
Sbjct: 9 QRLQEERKKWRKDH-PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD 125
+YP KPP+VKF +HPNV G ICL IL +
Sbjct: 68 NEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNE 101
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 122
++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G + L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 123 LQD 125
L++
Sbjct: 97 LEE 99
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 87 SLRFPLD----YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
S+ F LD YP +PP+V FHPN+D GN+CL+IL++ WS A D ++
Sbjct: 81 SINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQS 133
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 32 TTSVTQRLQKELMSLMM-SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
++ R+QK++ L + D+ +F + + + + I +G Y+ + S +
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDI---SFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKV 59
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 128
YP PP+VK ET +HPN+D GN+CL+IL++ W
Sbjct: 60 GQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWK 97
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
R+QKEL + + + + + +I WI G + T+Y YKL + FP DYP K
Sbjct: 10 RIQKELHNFL-NNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 68
Query: 98 PPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSA 130
PP V F + H +V G+ICL +L D ++ +
Sbjct: 69 PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPS 102
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 78 MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 128
Y+ + S + YP PP+VK ETM +HPN+D GN+ L+IL++ W
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWK 117
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 62 ESIFTWIGTIEGGKGTMYEGL--SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 119
++I+ WI ++ ++Y G +Y+LS+ F DYP +PP V+F T + P V G IC
Sbjct: 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGIC 106
Query: 120 LDILQDKWS 128
++ D W+
Sbjct: 107 DRMVNDFWT 115
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
R+QKEL + + + + +I WI G + T+Y YK+ + FP +YP K
Sbjct: 24 RIQKELNNFL-KNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLK 82
Query: 98 PPQVKF-ETMCFHPNVDQYGNICLDILQDKWS 128
PP V F + H +V G+ICL +L D ++
Sbjct: 83 PPIVYFLQKPPKHTHVYSNGDICLSVLGDDYN 114
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 125 -DKWSSAYD 132
++W+ +D
Sbjct: 110 PEEWTPVWD 118
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 125 -DKWSSAYD 132
++W+ +D
Sbjct: 110 PEEWTPVWD 118
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 125 -DKWSSAYD 132
++W+ +D
Sbjct: 110 PEEWTPVWD 118
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
T+ TQRL+++ + + + A P +I W + G + T YEG Y L FP
Sbjct: 13 TTATQRLKQDYLRIKKDPVPY-ICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGN--ICLDILQ---DKWSSAYDCRT 135
++PFKPP + T PN N +CL I D W+ A+ T
Sbjct: 72 EFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVST 115
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
FP+ + + T+ +G Y+G ++ P Y PP+VK T +HPN+ + G
Sbjct: 38 FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 118 ICLDILQD 125
ICL +L++
Sbjct: 97 ICLSLLRE 104
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
FP+ + + T+ +G Y+G ++ P Y PP+VK T +HPN+ + G
Sbjct: 38 FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 118 ICLDILQD 125
ICL +L++
Sbjct: 97 ICLSLLRE 104
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 71 IEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-----MCFHPNVDQYGNICLDIL-- 123
I G T Y ++ + FP DYP PP V ET + F+PN+ G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 124 -----QDKWS 128
++KW+
Sbjct: 176 WHGRPEEKWN 185
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 119
++ W TI G GT++E Y L++ +YP PP VKF+T VD G +
Sbjct: 53 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 112
Query: 120 LDILQDKWSSAYDCRT 135
L IL++ W+ Y T
Sbjct: 113 LHILKN-WNRNYTIET 127
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 119
++ W TI G GT++E Y L++ +YP PP VKF+T VD G +
Sbjct: 57 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 116
Query: 120 LDILQDKWSSAYDCRT 135
L IL++ W+ Y T
Sbjct: 117 LHILKN-WNRNYTIET 131
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T+YE Y L + Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 95 PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRT 135
P PP V+F T V+ + + +L KW ++Y +
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKV 114
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T+YE Y L + Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 95 PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRT 135
P PP V+F T V+ + + +L KW ++Y +
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKV 132
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T+YE Y L + Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 95 PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRT 135
P PP V+F T V+ + + +L KW ++Y +
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKV 142
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRT 135
P PP V+F T ++ + + +L KW ++Y +
Sbjct: 74 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKV 117
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRT 135
P PP V+F T ++ + + +L KW ++Y +
Sbjct: 68 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKV 111
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRT 135
P PP V+F T ++ + + +L KW ++Y +
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKV 122
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRT 135
P PP V+F T ++ + + +L KW ++Y +
Sbjct: 69 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKV 112
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDI--L 123
W GTI G + +E Y LS+ +YP PP+V F + P V+ G + D L
Sbjct: 41 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 100
Query: 124 QDKWSSAYDCRT 135
+D W AY T
Sbjct: 101 RD-WKRAYTMET 111
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDI--L 123
W GTI G + +E Y LS+ +YP PP+V F + P V+ G + D L
Sbjct: 42 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 101
Query: 124 QDKWSSAYDCRT 135
+D W AY T
Sbjct: 102 RD-WKRAYTMET 112
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 72 EGGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLD 121
GG G T +G Y L+ F L YP+ PQV + FH PNV + N L+
Sbjct: 269 HGGAGNVITFEDGRLYDLANVFMLAYPYGYPQV-MSSYDFHGDTDAGGPNVPVHNNGNLE 327
Query: 122 ILQDKW 127
W
Sbjct: 328 CFASNW 333
>pdb|2YEV|A Chain A, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|D Chain D, Structure Of Caa3-Type Cytochrome Oxidase
Length = 791
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 57 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF---------------PLDYPF 96
A P G +F IGT+ GGK M L + L F PLDY F
Sbjct: 322 AVPTGVKLFNIIGTLWGGKLQMKTPLYWVLGFIFNFLLGGITGVMLSMTPLDYQF 376
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 72 EGGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLD 121
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 269 HGGAGNVITFEDGRLYDLANVFMLAYPYGYPKV-MSSYDFHGDTDAGGPNVPVHNNGNLE 327
Query: 122 ILQDKW 127
W
Sbjct: 328 CFASNW 333
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 72 EGGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLD 121
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 269 HGGAGNVITFEDGRLYDLANVFMLAYPYGYPKV-MSSYDFHGDTDAGGPNVPVHNNGNLE 327
Query: 122 ILQDKW 127
W
Sbjct: 328 CFASNW 333
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 72 EGGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLD 121
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 269 HGGAGNVITFEDGRLYDLANVFMLAYPYGYPKV-MSSYDFHGDTDAGGPNVPVHNNGNLE 327
Query: 122 ILQDKW 127
W
Sbjct: 328 CFASNW 333
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 72 EGGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLD 121
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 269 HGGAGNVITFEDGRLYDLANVFMLAYPYGYPRV-MSSYDFHGDTDAGGPNVPVHNNGNLE 327
Query: 122 ILQDKW 127
W
Sbjct: 328 CFASNW 333
>pdb|1M57|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
pdb|1M57|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
Length = 566
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
V A P G IF+WI T+ GG + + + L F
Sbjct: 354 VIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLF 389
>pdb|1M56|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M56|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|2GSM|A Chain A, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides
pdb|2GSM|C Chain C, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides
pdb|3DTU|A Chain A, Catalytic Core Subunits (i And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides Complexed With Deoxycholic
Acid
pdb|3DTU|C Chain C, Catalytic Core Subunits (i And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides Complexed With Deoxycholic
Acid
pdb|3FYE|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State
pdb|3FYE|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State
pdb|3FYI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State Bound
With Cyanide
pdb|3FYI|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State Bound
With Cyanide
Length = 566
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
V A P G IF+WI T+ GG + + + L F
Sbjct: 354 VIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLF 389
>pdb|3OMI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation
pdb|3OMI|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation
pdb|3OMN|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation In The
Reduced State
pdb|3OMN|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation In The
Reduced State
Length = 535
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
V A P G IF+WI T+ GG + + + L F
Sbjct: 338 VIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLF 373
>pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|A Chain A, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|N Chain N, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|A Chain A, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|N Chain N, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|A Chain A, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|N Chain N, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|A Chain A, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|N Chain N, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
Length = 514
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
+ A P G +F+W+ T+ GG + + L F
Sbjct: 311 IIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIF 346
>pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|N Chain N, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|A Chain A, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|N Chain N, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|A Chain A, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|N Chain N, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|2Y69|A Chain A, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|N Chain N, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2YBB|L Chain L, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 514
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
+ A P G +F+W+ T+ GG + + L F
Sbjct: 311 IIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIF 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,431,821
Number of Sequences: 62578
Number of extensions: 164510
Number of successful extensions: 568
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 129
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)