Query 031481
Match_columns 159
No_of_seqs 134 out of 1109
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3.4E-45 7.4E-50 270.2 12.7 125 32-157 3-128 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 4E-45 8.7E-50 265.0 9.8 121 35-156 2-122 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.2E-43 2.7E-48 251.2 8.9 126 32-158 2-127 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.4E-41 5.2E-46 251.3 12.9 122 34-156 2-123 (152)
5 PLN00172 ubiquitin conjugating 100.0 5.8E-41 1.3E-45 248.1 12.8 121 35-156 2-122 (147)
6 KOG0421 Ubiquitin-protein liga 100.0 5.2E-40 1.1E-44 236.0 10.0 138 18-156 13-150 (175)
7 KOG0425 Ubiquitin-protein liga 100.0 5.7E-37 1.2E-41 223.1 11.9 120 34-154 5-138 (171)
8 PF00179 UQ_con: Ubiquitin-con 100.0 4.1E-37 8.8E-42 225.4 9.2 119 38-157 1-121 (140)
9 KOG0424 Ubiquitin-protein liga 100.0 1.4E-36 3.1E-41 218.2 11.7 125 32-157 2-133 (158)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 3E-36 6.5E-41 221.1 11.7 119 37-156 2-121 (141)
11 KOG0418 Ubiquitin-protein liga 100.0 1.7E-36 3.7E-41 226.6 9.6 119 35-154 4-126 (200)
12 KOG0426 Ubiquitin-protein liga 100.0 1.1E-35 2.4E-40 211.0 11.2 122 32-154 2-137 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 6.7E-35 1.5E-39 214.9 12.1 120 37-157 1-122 (145)
14 KOG0427 Ubiquitin conjugating 100.0 2.8E-31 6E-36 188.3 11.5 120 27-148 8-128 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 1.2E-31 2.7E-36 191.8 9.4 119 34-154 2-122 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 6E-32 1.3E-36 199.6 7.1 127 27-157 21-151 (184)
17 KOG0894 Ubiquitin-protein liga 100.0 1.3E-29 2.7E-34 193.3 12.5 120 30-154 1-125 (244)
18 KOG0423 Ubiquitin-protein liga 100.0 8.5E-31 1.8E-35 193.7 3.0 127 32-159 8-134 (223)
19 KOG0416 Ubiquitin-protein liga 100.0 3.8E-29 8.3E-34 184.4 7.4 119 35-157 4-124 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 2.4E-22 5.3E-27 156.2 9.4 113 29-145 6-121 (314)
21 KOG0895 Ubiquitin-conjugating 99.7 4.7E-18 1E-22 153.4 7.1 121 34-155 851-980 (1101)
22 KOG0429 Ubiquitin-conjugating 99.7 6.3E-17 1.4E-21 124.3 10.7 121 30-152 15-139 (258)
23 KOG0895 Ubiquitin-conjugating 99.6 2.4E-15 5.2E-20 136.1 11.2 117 32-149 280-407 (1101)
24 KOG0896 Ubiquitin-conjugating 99.4 6.1E-13 1.3E-17 95.2 6.9 112 35-146 6-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 2.8E-09 6E-14 74.5 3.2 65 84-148 13-79 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 9.3E-08 2E-12 69.5 5.4 66 80-145 34-105 (133)
27 PF05743 UEV: UEV domain; Int 98.3 3.1E-06 6.7E-11 60.7 6.3 107 40-147 2-118 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.0 5.6E-06 1.2E-10 60.3 3.2 99 32-137 22-135 (161)
29 KOG2391 Vacuolar sorting prote 97.6 0.00062 1.3E-08 56.2 9.0 115 32-149 18-140 (365)
30 KOG3357 Uncharacterized conser 97.3 0.00078 1.7E-08 48.5 5.8 99 31-136 24-137 (167)
31 PF14462 Prok-E2_E: Prokaryoti 96.2 0.053 1.1E-06 38.9 8.5 90 53-145 12-120 (122)
32 PF05773 RWD: RWD domain; Int 95.8 0.025 5.4E-07 38.7 5.1 69 37-107 4-74 (113)
33 PF14457 Prok-E2_A: Prokaryoti 95.4 0.028 6E-07 42.3 4.4 61 86-146 57-126 (162)
34 smart00591 RWD domain in RING 95.2 0.13 2.8E-06 34.8 7.0 27 80-106 39-65 (107)
35 KOG0309 Conserved WD40 repeat- 89.9 1.1 2.4E-05 41.3 6.7 70 35-106 421-491 (1081)
36 PF09765 WD-3: WD-repeat regio 81.3 3.5 7.5E-05 33.9 5.1 89 33-145 98-187 (291)
37 KOG4018 Uncharacterized conser 70.2 13 0.00029 29.1 5.3 22 83-104 50-71 (215)
38 PF06113 BRE: Brain and reprod 55.4 32 0.0007 28.8 5.4 60 78-143 61-123 (333)
39 PF14460 Prok-E2_D: Prokaryoti 54.7 16 0.00035 27.5 3.3 40 105-147 90-133 (175)
40 cd00421 intradiol_dioxygenase 53.7 14 0.00029 27.0 2.6 25 81-105 65-90 (146)
41 cd03457 intradiol_dioxygenase_ 52.6 14 0.00031 28.3 2.7 26 80-105 85-110 (188)
42 smart00340 HALZ homeobox assoc 49.3 15 0.00033 21.3 1.8 14 35-48 20-33 (44)
43 PF03366 YEATS: YEATS family; 46.5 70 0.0015 21.1 5.0 43 65-109 2-44 (84)
44 PF14135 DUF4302: Domain of un 45.1 68 0.0015 25.2 5.6 70 33-115 8-102 (235)
45 cd03459 3,4-PCD Protocatechuat 40.2 30 0.00064 25.7 2.7 25 81-105 72-101 (158)
46 PF14455 Metal_CEHH: Predicted 37.9 1E+02 0.0022 23.1 5.1 65 37-106 8-76 (177)
47 KOG3285 Spindle assembly check 33.8 1.5E+02 0.0032 22.9 5.5 59 30-100 115-173 (203)
48 TIGR02423 protocat_alph protoc 32.2 44 0.00096 25.7 2.6 25 80-104 95-124 (193)
49 KOG0177 20S proteasome, regula 31.9 21 0.00046 27.5 0.8 31 115-145 135-165 (200)
50 TIGR03737 PRTRC_B PRTRC system 31.2 69 0.0015 25.4 3.5 33 110-146 139-172 (228)
51 PF09606 Med15: ARC105 or Med1 30.1 17 0.00037 34.0 0.0 25 82-106 714-738 (799)
52 PF00845 Gemini_BL1: Geminivir 29.6 94 0.002 25.1 4.0 46 63-108 101-154 (276)
53 cd03463 3,4-PCD_alpha Protocat 28.4 58 0.0012 24.9 2.6 24 81-104 92-120 (185)
54 PF06113 BRE: Brain and reprod 26.3 65 0.0014 27.1 2.7 24 82-105 306-329 (333)
55 KOG4274 Positive cofactor 2 (P 26.0 3.4E+02 0.0075 24.8 7.2 55 32-98 617-675 (742)
56 PF13950 Epimerase_Csub: UDP-g 25.3 92 0.002 19.2 2.7 20 125-144 36-55 (62)
57 PF08203 RNA_polI_A14: Yeast R 23.9 61 0.0013 21.2 1.7 13 34-46 59-71 (76)
58 KOG4445 Uncharacterized conser 23.4 86 0.0019 26.2 2.9 25 82-106 45-69 (368)
59 COG0544 Tig FKBP-type peptidyl 22.3 2.5E+02 0.0054 24.5 5.7 14 84-97 211-224 (441)
60 PF12065 DUF3545: Protein of u 21.5 70 0.0015 19.9 1.6 13 36-48 36-48 (59)
61 PF04881 Adeno_GP19K: Adenovir 21.3 1.5E+02 0.0032 21.5 3.4 20 61-80 44-63 (139)
62 cd05845 Ig2_L1-CAM_like Second 21.1 1.6E+02 0.0034 19.9 3.4 26 79-106 16-41 (95)
63 PRK05270 galactose-1-phosphate 21.0 1.2E+02 0.0025 26.9 3.3 26 79-113 359-389 (493)
64 PHA03200 uracil DNA glycosylas 20.5 1.4E+02 0.003 24.2 3.5 79 65-146 83-182 (255)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-45 Score=270.19 Aligned_cols=125 Identities=49% Similarity=0.772 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccccccc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~-n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 110 (159)
+..+.+||++|+++|++ +++++|++.+..+ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||
T Consensus 3 s~~a~~RL~kE~~~l~~-~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HP 81 (153)
T COG5078 3 SPSALKRLLKELKKLQK-DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHP 81 (153)
T ss_pred chhHHHHHHHHHHHHhc-CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCC
Confidence 33489999999999999 9999999999987 999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCCC
Q 031481 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGHT 157 (159)
Q Consensus 111 nI~~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~ 157 (159)
||+.+|+||+++|++.|+|+++|++||.+|+++|.+||+.++.+.+|
T Consensus 82 NV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~da 128 (153)
T COG5078 82 NVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEA 128 (153)
T ss_pred CcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHH
Confidence 99999999999999999999999999999999999999866655543
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-45 Score=264.99 Aligned_cols=121 Identities=45% Similarity=0.766 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeC
Q 031481 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (159)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~ 114 (159)
+.+||.+|+++|++ ++++||++.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~-dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLR-DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhc-CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 45699999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCC
Q 031481 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGH 156 (159)
Q Consensus 115 ~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~ 156 (159)
.|+||+|+|++.|+|+.+|..||.+|+++|.+|||.++.+.+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ 122 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPD 122 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHH
Confidence 999999999999999999999999999999999997766544
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=251.23 Aligned_cols=126 Identities=40% Similarity=0.661 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 111 (159)
+..|.|||++|+++|++ +++.||+..|.++|+++|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||
T Consensus 2 stpArrrLmrDfkrlqe-dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQE-DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CchHHHHHHHHHHHhhc-CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 45688999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCCCC
Q 031481 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGHTN 158 (159)
Q Consensus 112 I~~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~~ 158 (159)
|+.+|.+|+|+|...|+|.|++.+||.+||+||.+||+.++.|.+|-
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA 127 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAA 127 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHH
Confidence 99999999999999999999999999999999999999888887764
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.4e-41 Score=251.31 Aligned_cols=122 Identities=43% Similarity=0.674 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccccccccee
Q 031481 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (159)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~ 113 (159)
++.|||++|+++|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~~~kRl~~E~~~l~~-~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~ 80 (152)
T PTZ00390 2 SISKRIEKETQNLAN-DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID 80 (152)
T ss_pred cHHHHHHHHHHHHHh-CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC
Confidence 357999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCC
Q 031481 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGH 156 (159)
Q Consensus 114 ~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~ 156 (159)
.+|.||+++|.+.|+|++||++||++|+++|.+|++.++.+.+
T Consensus 81 ~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~ 123 (152)
T PTZ00390 81 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTS 123 (152)
T ss_pred CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHH
Confidence 9999999999999999999999999999999999987665544
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.8e-41 Score=248.06 Aligned_cols=121 Identities=42% Similarity=0.718 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeC
Q 031481 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (159)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~ 114 (159)
+.+||++|+++|++ ++++++++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 2 a~~Rl~kE~~~l~~-~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLK-DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHh-CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 46899999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCC
Q 031481 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGH 156 (159)
Q Consensus 115 ~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~ 156 (159)
+|.||+++|.+.|+|++||++||.+|+++|.+|++.++.+.+
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~ 122 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPE 122 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHH
Confidence 999999999999999999999999999999999987665543
No 6
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-40 Score=236.04 Aligned_cols=138 Identities=61% Similarity=0.991 Sum_probs=131.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCC
Q 031481 18 ASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97 (159)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~ 97 (159)
.+.|+++......+.+.+.|||++||..|+. ...+||+++|..||++.|..+|.||.+|+|+|-.|++.+.||.+||+.
T Consensus 13 ~~sk~~a~~m~v~~~~~V~KRLq~ELm~Lmm-s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~ 91 (175)
T KOG0421|consen 13 NGSKQSAAPMAVVDGHSVTKRLQSELMGLMM-SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYK 91 (175)
T ss_pred CcccCCCCCcccccCchHHHHHHHHHHHHHh-cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCC
Confidence 6777788888888899999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccceeCCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCC
Q 031481 98 PPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGH 156 (159)
Q Consensus 98 pP~v~f~t~i~HpnI~~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~ 156 (159)
||.|+|.+++||||||..|.||+|+|++.|+..|+++.||.+||++|-+||-..+.|+.
T Consensus 92 pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaq 150 (175)
T KOG0421|consen 92 PPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQ 150 (175)
T ss_pred CCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999976666554
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-37 Score=223.10 Aligned_cols=120 Identities=34% Similarity=0.561 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccce
Q 031481 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (159)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~~i~~~~~~~-n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI 112 (159)
.+..-|+++|++|++ ++..|+++...++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.+++|||||
T Consensus 5 ~a~~ll~~qlk~L~~-~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 5 QASLLLLKQLKELQE-EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hhHHHHHHHHHHHhc-CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 367789999999999 9999999988855 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCC-------------CCCCCcCCHHHHHHHHHHHHhCCCCCCCcC
Q 031481 113 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGGLLVLPCMI 154 (159)
Q Consensus 113 ~~~G~icl~~l~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~~~~ 154 (159)
+.+|.+|+++|- +.|.|.+|+++||++|.+||.+||-..+.|
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPAN 138 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPAN 138 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccc
Confidence 999999999993 579999999999999999999999644433
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.1e-37 Score=225.39 Aligned_cols=119 Identities=47% Similarity=0.773 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeCCC
Q 031481 38 RLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116 (159)
Q Consensus 38 RL~~El~~l~~~~~~~~i~~~~~~~-n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G 116 (159)
||++|+++|++ +++.|+.+.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.+++|||||+.+|
T Consensus 1 Rl~~E~~~l~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQK-NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHH-SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred CHHHHHHHHhh-CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence 89999999999 9999999999886 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCC-CCCCcCCHHHHHHHHHHHHhCCCCCCCcCCCC
Q 031481 117 NICLDILQD-KWSSAYDCRTILLSIQSLLGGLLVLPCMIGHT 157 (159)
Q Consensus 117 ~icl~~l~~-~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~ 157 (159)
.||+++|.. .|+|+++|.+||.+|+++|.+|++.++.+.+|
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a 121 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEA 121 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHH
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHH
Confidence 999999974 59999999999999999999999877776554
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=218.18 Aligned_cols=125 Identities=36% Similarity=0.584 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecC-----CCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~-----~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
+..+..||+.|-+.|.+ +.+.|+.+.|.. .|++.|+|.|.|+.+|+||||.|.+++.||++||.+||+++|.++
T Consensus 2 s~~~~~rl~eErk~wrk-~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRK-DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred cchHHHHHHHHHHHHhh-cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 45668999999999999 999999998883 478999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCcEEeecCCCC--CCCcCCHHHHHHHHHHHHhCCCCCCCcCCCC
Q 031481 107 CFHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGGLLVLPCMIGHT 157 (159)
Q Consensus 107 i~HpnI~~~G~icl~~l~~~--W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~ 157 (159)
.|||||+++|.|||++|.+. |+|+.||..||.+|+.||.+||+.++.+++|
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA 133 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEA 133 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHH
Confidence 99999999999999999754 9999999999999999999999977766654
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3e-36 Score=221.10 Aligned_cols=119 Identities=50% Similarity=0.811 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeCCC
Q 031481 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116 (159)
Q Consensus 37 ~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G 116 (159)
|||++|+++|++ ++.+|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~-~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKK-DPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHh-CCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 799999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCC-CCCcCCHHHHHHHHHHHHhCCCCCCCcCCC
Q 031481 117 NICLDILQDK-WSSAYDCRTILLSIQSLLGGLLVLPCMIGH 156 (159)
Q Consensus 117 ~icl~~l~~~-W~p~~ti~~il~~i~~ll~~P~~~~~~~~~ 156 (159)
.||++++... |+|+++|++||.+|+++|.+|+..++.+.+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~ 121 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAE 121 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHH
Confidence 9999999876 999999999999999999999986655443
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=226.56 Aligned_cols=119 Identities=36% Similarity=0.611 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhhCC---CCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccc
Q 031481 35 VTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (159)
Q Consensus 35 ~~~RL~~El~~l~~~~~---~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 111 (159)
+.+||++|++++.+ ++ ..||.++...+|+.+.+..|.||+|||||||+|.++|.+|++|||+||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~-~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLD-DPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhcc-ChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 78999999999998 76 689999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcC
Q 031481 112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMI 154 (159)
Q Consensus 112 I~~-~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~ 154 (159)
|.. +|.||+|+|++.|.+++||+.+|++||++|..|+|.++-.
T Consensus 83 VSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqD 126 (200)
T KOG0418|consen 83 VSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQD 126 (200)
T ss_pred CCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHH
Confidence 999 9999999999999999999999999999999999966543
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=210.98 Aligned_cols=122 Identities=33% Similarity=0.611 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeec-CCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccccccc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~-~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 110 (159)
+..+.|||++||++|.. ++++||.+.|. +||+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 2 ~~~AlkRLm~EykqLt~-~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTL-NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred chhHHHHHHHHHHHHcc-CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 45789999999999999 99999999988 78999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCcEEeecCC-------------CCCCCcCCHHHHHHHHHHHHhCCCCCCCcC
Q 031481 111 NVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGGLLVLPCMI 154 (159)
Q Consensus 111 nI~~~G~icl~~l~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~~~~ 154 (159)
||+.+|++|+++|. +.|+|..+++.||.++.+||.+||-..+.|
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgAN 137 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGAN 137 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcc
Confidence 99999999999983 579999999999999999999999754443
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=6.7e-35 Score=214.87 Aligned_cols=120 Identities=51% Similarity=0.835 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeCC
Q 031481 37 QRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115 (159)
Q Consensus 37 ~RL~~El~~l~~~~~~~~i~~~~~~~-n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~ 115 (159)
+||++|++++++ ++++|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.++++||||+.+
T Consensus 1 ~Rl~~E~~~~~~-~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLK-DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHh-CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence 599999999999 8899999988865 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCC-CCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCCC
Q 031481 116 GNICLDILQ-DKWSSAYDCRTILLSIQSLLGGLLVLPCMIGHT 157 (159)
Q Consensus 116 G~icl~~l~-~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~ 157 (159)
|.||+++|. ++|+|++++++||.+|+++|.+|++..+.+.+|
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea 122 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADA 122 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 999999998 899999999999999999999999877665543
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-31 Score=188.34 Aligned_cols=120 Identities=35% Similarity=0.595 Sum_probs=111.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccc
Q 031481 27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 27 ~~~~~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
++..-+..+.+||+|||.+|+. +++.|+... ..+|+.+|.+-+.|.+||.|+|.+|.+.+.||+.||++.|+|.|..+
T Consensus 8 ~rk~ls~~at~RLqKEl~e~q~-~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 8 SRKALSKIATNRLQKELSEWQN-NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 3444477899999999999999 999999887 68999999999999999999999999999999999999999999988
Q ss_pred -ccccceeCCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCC
Q 031481 107 -CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLL 148 (159)
Q Consensus 107 -i~HpnI~~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~ 148 (159)
..||+|+.+|.||+++|.+.|+|++++.+|..+|.+||.+-.
T Consensus 86 ~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~ 128 (161)
T KOG0427|consen 86 APLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSK 128 (161)
T ss_pred CCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCc
Confidence 479999999999999999999999999999999999998643
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=191.76 Aligned_cols=119 Identities=29% Similarity=0.581 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeE-EeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccce
Q 031481 34 SVTQRLQKELMSLMMSGGDLGVS-AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (159)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~~i~-~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI 112 (159)
.+.+||.+||.+|++ ++...+. +...+.|++.|++.|. |++-||..|.|+++|.||.+|||+||+|.|.|+||||||
T Consensus 2 ~a~~Rl~kEL~dl~~-~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV 79 (153)
T KOG0422|consen 2 AAPRRLRKELADLQK-NKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV 79 (153)
T ss_pred chhHHHHHHHHHHHh-ccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence 478999999999999 8776554 3445789999999999 899999999999999999999999999999999999999
Q ss_pred eCCCcEEeecC-CCCCCCcCCHHHHHHHHHHHHhCCCCCCCcC
Q 031481 113 DQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGGLLVLPCMI 154 (159)
Q Consensus 113 ~~~G~icl~~l-~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~ 154 (159)
|+.|.+|+.++ .++|+|+...++||++|.+++.+|+|..+..
T Consensus 80 De~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr 122 (153)
T KOG0422|consen 80 DEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLR 122 (153)
T ss_pred CCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccch
Confidence 99999999988 5899999999999999999999999865543
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-32 Score=199.56 Aligned_cols=127 Identities=24% Similarity=0.447 Sum_probs=109.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCCCCeE--EeecCCCcc--eEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccc
Q 031481 27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVS--AFPEGESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK 102 (159)
Q Consensus 27 ~~~~~~~~~~~RL~~El~~l~~~~~~~~i~--~~~~~~n~~--~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 102 (159)
+...+.+.+.-||++|+.+++- +++++ +....++.+ +++++|. |+++.|+||.|.|.+.+|+.||++||+|.
T Consensus 21 ~~~~~~s~a~lrl~~di~elnL---p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVk 96 (184)
T KOG0420|consen 21 STRKKVSAALLRLKKDILELNL---PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVK 96 (184)
T ss_pred cccccccHHHHHHHhhhhhccC---CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeee
Confidence 4455667788899999988876 44444 222244444 5999999 99999999999999999999999999999
Q ss_pred ccccccccceeCCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCCC
Q 031481 103 FETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGHT 157 (159)
Q Consensus 103 f~t~i~HpnI~~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~ 157 (159)
|.+++||||||.+|.||+++|+++|+|+.+|.+|+.+|+.+|.+|++.++.|-+|
T Consensus 97 CltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eA 151 (184)
T KOG0420|consen 97 CLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEA 151 (184)
T ss_pred eeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHH
Confidence 9999999999999999999999999999999999999999999999877766544
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=193.29 Aligned_cols=120 Identities=30% Similarity=0.484 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccc--c
Q 031481 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--C 107 (159)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i 107 (159)
|++..+.|||+|||+.|.+ +|.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|++.|| .
T Consensus 1 ma~k~a~kRl~keY~~l~k-~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR 79 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCK-DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR 79 (244)
T ss_pred CcchHHHHHHHHHHHHHHh-CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence 4678899999999999999 999999999999999999999999999999999999999999999999999999997 4
Q ss_pred cccceeCCCcEEeecCC---CCCCCcCCHHHHHHHHHHHHhCCCCCCCcC
Q 031481 108 FHPNVDQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLGGLLVLPCMI 154 (159)
Q Consensus 108 ~HpnI~~~G~icl~~l~---~~W~p~~ti~~il~~i~~ll~~P~~~~~~~ 154 (159)
|.+ +-++|+++.. +.|+|+|++.+||.+|.++|.+-.|.-+.+
T Consensus 80 Fkt----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 80 FKT----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred eec----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 544 4599998874 899999999999999999999988855543
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.5e-31 Score=193.74 Aligned_cols=127 Identities=30% Similarity=0.484 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 111 (159)
....+|.|.+|++.|.. .++.||.|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-+|+|+|||||
T Consensus 8 pp~vik~~~kEl~~l~~-~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 8 PPNVIKQLAKELKSLDE-SPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred ChHHHHHHHHHHHhccc-CCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 45678999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCCCCCcCCHHHHHHHHHHHHhCCCCCCCcCCCCCC
Q 031481 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGGLLVLPCMIGHTNR 159 (159)
Q Consensus 112 I~~~G~icl~~l~~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~~~~~ 159 (159)
|..+|.||++.|+.+|+|..+|.+||..|.++|..|+|....|.+|+|
T Consensus 87 VaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGk 134 (223)
T KOG0423|consen 87 VAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGK 134 (223)
T ss_pred cccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHH
Confidence 999999999999999999999999999999999999998888887754
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=184.42 Aligned_cols=119 Identities=29% Similarity=0.566 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeC
Q 031481 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (159)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~ 114 (159)
..|||..|...|.. . +..|...++++.+++|.+.||.++||+||+++++|.+|++||++.|.|.|.++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~-s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM-S---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHh-c---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 46899999999886 2 3357777888999999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEeecCCCCCCCcCCHHHHHHH-HHHHHhCCCCCCCcCCCC
Q 031481 115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGGLLVLPCMIGHT 157 (159)
Q Consensus 115 -~G~icl~~l~~~W~p~~ti~~il~~-i~~ll~~P~~~~~~~~~~ 157 (159)
+|.||++.++..|+|.|++..|+.. |-.||..|||.++.|++|
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eA 124 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEA 124 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHH
Confidence 9999999999999999999999875 568899999988877776
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-22 Score=156.22 Aligned_cols=113 Identities=29% Similarity=0.459 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccccc
Q 031481 29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (159)
Q Consensus 29 ~~~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (159)
..-.+.+.|||++|.++|+ +|...+...+.+||+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+-.
T Consensus 6 YN~KnpaVkRlmkEa~El~--~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 6 YNLKNPAVKRLMKEAAELK--DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred hcccCHHHHHHHHHHHHhc--CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 3445678999999999999 58888889999999999999999999999999999999999999999999999998743
Q ss_pred ccceeCCCcEEeecCC---CCCCCcCCHHHHHHHHHHHHh
Q 031481 109 HPNVDQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLG 145 (159)
Q Consensus 109 HpnI~~~G~icl~~l~---~~W~p~~ti~~il~~i~~ll~ 145 (159)
.+..+-+||+++.. +.|.|+|+|...|.+|..+|-
T Consensus 84 --RFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 84 --RFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred --ceeeCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 34456789999984 899999999999999999885
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.7e-18 Score=153.35 Aligned_cols=121 Identities=25% Similarity=0.407 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccc--ccccc
Q 031481 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPN 111 (159)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpn 111 (159)
...+..+.|++-|.. +.+.+|.|...++.+....+.|.|+.+|||.+|.|.|.|.||++||..||.+...+. .++||
T Consensus 851 ~~~~~~~~~~~~~~~-~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPL-SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHhhhc-cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 566777888888888 889999999999999999999999999999999999999999999999999999976 68999
Q ss_pred eeCCCcEEeecCC-------CCCCCcCCHHHHHHHHHHHHhCCCCCCCcCC
Q 031481 112 VDQYGNICLDILQ-------DKWSSAYDCRTILLSIQSLLGGLLVLPCMIG 155 (159)
Q Consensus 112 I~~~G~icl~~l~-------~~W~p~~ti~~il~~i~~ll~~P~~~~~~~~ 155 (159)
.|.+|++|+++|. +.|+|+-+|.+||++||.|.-+..|...+++
T Consensus 930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~g 980 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEAG 980 (1101)
T ss_pred cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCccc
Confidence 9999999999995 6799999999999999999998888555543
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.3e-17 Score=124.30 Aligned_cols=121 Identities=19% Similarity=0.301 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCC--CCCcccccccc
Q 031481 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETMC 107 (159)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i 107 (159)
.+.......|+.|+..+.+ .+.+||+|.|.-.|-+.|..+|++ ..+.|.||+|+|+|.+|++||. ..|+|.|.+++
T Consensus 15 ig~i~qey~llAEf~lV~~-ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~v 92 (258)
T KOG0429|consen 15 IGNILQEYALLAEFVLVCR-EKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSV 92 (258)
T ss_pred chHHHHHHHHHHHHHHHHh-ccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccc
Confidence 4445566789999999998 999999999999999999999995 5568999999999999999995 89999999999
Q ss_pred cccceeC-CCcEEeecCCCCCCCc-CCHHHHHHHHHHHHhCCCCCCC
Q 031481 108 FHPNVDQ-YGNICLDILQDKWSSA-YDCRTILLSIQSLLGGLLVLPC 152 (159)
Q Consensus 108 ~HpnI~~-~G~icl~~l~~~W~p~-~ti~~il~~i~~ll~~P~~~~~ 152 (159)
+||+|.+ ++.+|++-....|... ..|..||+.||..|.+|+..-|
T Consensus 93 fHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~ 139 (258)
T KOG0429|consen 93 FHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSID 139 (258)
T ss_pred cccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchh
Confidence 9999999 9999998766569876 5699999999999999997443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.4e-15 Score=136.07 Aligned_cols=117 Identities=28% Similarity=0.429 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccc---cc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CF 108 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~---i~ 108 (159)
+....+|+++|++-+.+ +.+.++.+.+.+.++...++.|.|+.++||++|+|.|.|.||..||..||.+.+.+. .+
T Consensus 280 s~~~skrv~ke~~llsk-dlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~ 358 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSK-DLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL 358 (1101)
T ss_pred chhhHHHHHHHhhhhcc-cCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence 45678999999999999 999999999999999999999999999999999999999999999999999999976 78
Q ss_pred ccceeCCCcEEeecCC-------CCCCCc-CCHHHHHHHHHHHHhCCCC
Q 031481 109 HPNVDQYGNICLDILQ-------DKWSSA-YDCRTILLSIQSLLGGLLV 149 (159)
Q Consensus 109 HpnI~~~G~icl~~l~-------~~W~p~-~ti~~il~~i~~ll~~P~~ 149 (159)
.||.+.+|+||+++|. +.|+|. .+|.++|..||.++.+.-|
T Consensus 359 nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~P 407 (1101)
T KOG0895|consen 359 NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEP 407 (1101)
T ss_pred cCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCc
Confidence 9999999999999983 679999 8899999999999987754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.1e-13 Score=95.21 Aligned_cols=112 Identities=29% Similarity=0.374 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecC-CCc--ceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccc
Q 031481 35 VTQRLQKELMSLMMSGGDLGVSAFPEG-ESI--FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (159)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~~i~~~~~~-~n~--~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 111 (159)
..-||.+|+.+=+++-.+..++....+ +|+ ..|...|.||+.|+||+.+|.++|..-++||..||+|+|.+++--..
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 345788888888774456666665553 343 48999999999999999999999999999999999999999998888
Q ss_pred eeC-CCcEEeecC--CCCCCCcCCHHHHHHHHHHHHhC
Q 031481 112 VDQ-YGNICLDIL--QDKWSSAYDCRTILLSIQSLLGG 146 (159)
Q Consensus 112 I~~-~G~icl~~l--~~~W~p~~ti~~il~~i~~ll~~ 146 (159)
|.. +|-+.-.-+ -.+|+..|+++.+|..++.+|..
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 877 667664322 27999999999999999966553
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.8e-09 Score=74.49 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=55.3
Q ss_pred EEEEEeCCCCCCCCCCccccccc-ccccceeCCCcEEeecCC-CCCCCcCCHHHHHHHHHHHHhCCC
Q 031481 84 YKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGGLL 148 (159)
Q Consensus 84 f~~~i~fp~~YP~~pP~v~f~t~-i~HpnI~~~G~icl~~l~-~~W~p~~ti~~il~~i~~ll~~P~ 148 (159)
.-+.+.|+++||+.||.+|...| +-...|-.+|.||+.+|. ++|+.+|+|+.++++|..++..-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~ 79 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGG 79 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccc
Confidence 45678899999999999999887 445566679999999994 899999999999999999886543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.59 E-value=9.3e-08 Score=69.47 Aligned_cols=66 Identities=32% Similarity=0.602 Sum_probs=60.5
Q ss_pred CCCEEEEEEeCCCCCCCCCCcccccccc---cccceeCCCcEEe---ecCCCCCCCcCCHHHHHHHHHHHHh
Q 031481 80 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLG 145 (159)
Q Consensus 80 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnI~~~G~icl---~~l~~~W~p~~ti~~il~~i~~ll~ 145 (159)
.|+.+.++|.||++||..||.|....+. +-|||+.+|.+|+ ...-+.|.|.-.+.++|..++.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999998654 6899999999998 6667899999999999999999998
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.25 E-value=3.1e-06 Score=60.65 Aligned_cols=107 Identities=19% Similarity=0.378 Sum_probs=64.8
Q ss_pred HHHHHHHHhhCCCCCeEE--eecCCCcceEEEEEecCCCCCCCCCEE--EEEEeCCCCCCCCCCcccccccc-----ccc
Q 031481 40 QKELMSLMMSGGDLGVSA--FPEGESIFTWIGTIEGGKGTMYEGLSY--KLSLRFPLDYPFKPPQVKFETMC-----FHP 110 (159)
Q Consensus 40 ~~El~~l~~~~~~~~i~~--~~~~~n~~~w~v~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~Hp 110 (159)
.+|+..+.+.-+...... ...++...+--+.+.|----.|+|..| .+.|.+|.+||..||.+...... -+.
T Consensus 2 ~~d~~~~l~~y~~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~ 81 (121)
T PF05743_consen 2 FNDVLSVLQNYPSLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH 81 (121)
T ss_dssp HHHHHHHHHHSTTEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC
T ss_pred HHHHHHHHHHCCCCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC
Confidence 356666554123222222 222343344444455522235777777 56777899999999999887432 244
Q ss_pred ceeCCCcEEeecCCCCCCC-cCCHHHHHHHHHHHHhCC
Q 031481 111 NVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLGGL 147 (159)
Q Consensus 111 nI~~~G~icl~~l~~~W~p-~~ti~~il~~i~~ll~~P 147 (159)
+||.+|+|.+..| +.|++ ..++.+++..+...|.+.
T Consensus 82 ~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~~~ 118 (121)
T PF05743_consen 82 HVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFSEE 118 (121)
T ss_dssp CB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCCHS
T ss_pred eECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHhHc
Confidence 9999999998888 47876 788999999999988753
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.99 E-value=5.6e-06 Score=60.26 Aligned_cols=99 Identities=21% Similarity=0.372 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCC----------EEEEEEeCCCCCCCCCCcc
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQV 101 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v 101 (159)
......||+.||..|-+ +++...++-..|.-.=.-+.||-|.|. .|.+++.+|..||..||.|
T Consensus 22 ~~~W~~RLKEEy~aLI~-------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 22 GDLWVQRLKEEYQALIK-------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp CHHHHHHHHHHHHHHHH-------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence 36789999999999876 222222222233222222444444432 2667777899999999999
Q ss_pred ccccc-ccccceeCCCcEEeecCC-CCC---CCcCCHHHHH
Q 031481 102 KFETM-CFHPNVDQYGNICLDILQ-DKW---SSAYDCRTIL 137 (159)
Q Consensus 102 ~f~t~-i~HpnI~~~G~icl~~l~-~~W---~p~~ti~~il 137 (159)
....- --....+.+|+||++.-. .-| .|.++|.+.|
T Consensus 95 ~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 95 ALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred eccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 87642 223355678999998763 335 4667766553
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00062 Score=56.24 Aligned_cols=115 Identities=18% Similarity=0.299 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEE--EEEeCCCCCCCCCCccccccc---
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETM--- 106 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~--- 106 (159)
...+.+-+...+..... -.++-..+...|.-..-...+.|---.+|.|..|. +.|.+.+.||..||.+.....
T Consensus 18 ~~~~~~~~l~lls~~~s--L~P~t~tf~~~Dg~s~~ll~~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M 95 (365)
T KOG2391|consen 18 KDLTRQDLLNLLSSFKS--LRPKTDTFTHNDGRSRLLLQLDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTM 95 (365)
T ss_pred hhhHHHHHHHHHHhccc--cCcccceEEecCCCccchhhccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchh
Confidence 33444555555555554 22222222222322222233444444578887765 566679999999999876632
Q ss_pred --ccccceeCCCcEEeecCCCCCC-CcCCHHHHHHHHHHHHhCCCC
Q 031481 107 --CFHPNVDQYGNICLDILQDKWS-SAYDCRTILLSIQSLLGGLLV 149 (159)
Q Consensus 107 --i~HpnI~~~G~icl~~l~~~W~-p~~ti~~il~~i~~ll~~P~~ 149 (159)
-.|-||+.+|+|.+..|. .|. |++++..++..|.+.|.++.|
T Consensus 96 ~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 96 IIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDPP 140 (365)
T ss_pred hhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCCc
Confidence 138999999999999996 676 678899999999999998887
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00078 Score=48.51 Aligned_cols=99 Identities=20% Similarity=0.389 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCE----------EEEEEeCCCCCCCCCCc
Q 031481 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPFKPPQ 100 (159)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~----------f~~~i~fp~~YP~~pP~ 100 (159)
.......||+.|++.|.. +++-..++-..|.-.=..+.||-|-|.+ |-+++.+|-.||..+|.
T Consensus 24 d~~~wvqrlkeey~sli~-------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 24 DGDLWVQRLKEEYQSLIA-------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred cchHHHHHHHHHHHHHHH-------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 345789999999999887 3333334444554333447777776643 55666679999999999
Q ss_pred cccccc-ccccceeCCCcEEeecC-CCCCC---CcCCHHHH
Q 031481 101 VKFETM-CFHPNVDQYGNICLDIL-QDKWS---SAYDCRTI 136 (159)
Q Consensus 101 v~f~t~-i~HpnI~~~G~icl~~l-~~~W~---p~~ti~~i 136 (159)
|....- --.-..+.+|+||+.-- +.-|. |.++|.+.
T Consensus 97 ialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 97 IALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred ccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 876531 11224456899998643 45574 44555443
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.23 E-value=0.053 Score=38.88 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCeEEeecCCCcceEEEEEec--CCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccceeCCCcE--Eee-------
Q 031481 53 LGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI--CLD------- 121 (159)
Q Consensus 53 ~~i~~~~~~~n~~~w~v~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G~i--cl~------- 121 (159)
.|+..+.+.+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+.+..|-.... .+|.+ |-+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 45667777666667765 655 55667999999999999999999999877766533211 11223 221
Q ss_pred -------cCCCCCCCcC-CHHHHHHHHHHHHh
Q 031481 122 -------ILQDKWSSAY-DCRTILLSIQSLLG 145 (159)
Q Consensus 122 -------~l~~~W~p~~-ti~~il~~i~~ll~ 145 (159)
.-...|.|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1125688876 49999999888775
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.79 E-value=0.025 Score=38.75 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEec--CCCCCCCCCEEEEEEeCCCCCCCCCCcccccccc
Q 031481 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (159)
Q Consensus 37 ~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (159)
.+...|+..|+. -=+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+....
T Consensus 4 e~~~~EieaL~s-Iy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQS-IYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHH-HSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHH-HcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888886 322222 22233445566666631 2333344567999999999999999999877653
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.40 E-value=0.028 Score=42.27 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=49.1
Q ss_pred EEEeCCCCCCCCCCcccccccc---cccceeCC-----CcEEeecCC-CCCCCcCCHHHHHHHHHHHHhC
Q 031481 86 LSLRFPLDYPFKPPQVKFETMC---FHPNVDQY-----GNICLDILQ-DKWSSAYDCRTILLSIQSLLGG 146 (159)
Q Consensus 86 ~~i~fp~~YP~~pP~v~f~t~i---~HpnI~~~-----G~icl~~l~-~~W~p~~ti~~il~~i~~ll~~ 146 (159)
+.|.|+.+||..+|.|.+..+. .+||+... ..+|+.--. ..|.+..+++.+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 5688999999999987777653 35888876 779986553 5799999999999999887753
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.16 E-value=0.13 Score=34.82 Aligned_cols=27 Identities=22% Similarity=0.504 Sum_probs=22.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCccccccc
Q 031481 80 EGLSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 80 egg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
....+.+.|.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988754
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.93 E-value=1.1 Score=41.25 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCC-CCCccccccc
Q 031481 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF-KPPQVKFETM 106 (159)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~-~pP~v~f~t~ 106 (159)
...-|.+|+.-|- .+.+++.++..+-.-....+.+.||-..--.....++.|.||.+||. .+|.+.|..+
T Consensus 421 ~pQnLgeE~S~Ig--~k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIG--VKIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhh--ccccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4456777777666 36667777655545556778888755433222345889999999999 6789988854
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=81.33 E-value=3.5 Score=33.85 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccccce
Q 031481 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (159)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI 112 (159)
...-.+|.+|+.++.. +.. +.+. .++++...++.+... .....++|.++.+||.++|.+...-|+-
T Consensus 98 ~~~ys~ll~EIe~IGW-~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~~---- 163 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGW-DKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPIP---- 163 (291)
T ss_dssp -GGC-CHHHHHHHHHC-GCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS-----
T ss_pred cHHHHHHHHHHHHhcc-ccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCcc----
Confidence 3445688888888876 333 2222 356788888888731 1467899999999999999754443321
Q ss_pred eCCCcEEeecCCCCCCC-cCCHHHHHHHHHHHHh
Q 031481 113 DQYGNICLDILQDKWSS-AYDCRTILLSIQSLLG 145 (159)
Q Consensus 113 ~~~G~icl~~l~~~W~p-~~ti~~il~~i~~ll~ 145 (159)
+...|.+ ..++.+++.+.+.++.
T Consensus 164 ----------~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 164 ----------FSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ----------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----------hhhhhcccccCHHHHHHHHHHHHH
Confidence 0135777 6678888887777664
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=70.17 E-value=13 Score=29.10 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCCCCCCCccccc
Q 031481 83 SYKLSLRFPLDYPFKPPQVKFE 104 (159)
Q Consensus 83 ~f~~~i~fp~~YP~~pP~v~f~ 104 (159)
.+.+.+.++++||.++|.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999433
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=55.44 E-value=32 Score=28.84 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=42.3
Q ss_pred CCCCCEEEEEEeCCCCCCCCCCccccc-ccccccceeCCCcEEeecCCCCCCCcC--CHHHHHHHHHHH
Q 031481 78 MYEGLSYKLSLRFPLDYPFKPPQVKFE-TMCFHPNVDQYGNICLDILQDKWSSAY--DCRTILLSIQSL 143 (159)
Q Consensus 78 pyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HpnI~~~G~icl~~l~~~W~p~~--ti~~il~~i~~l 143 (159)
||.|...+-+|.|...||..||-+.|. ..-|+|-.. .+ ..| .+|.+.- .+..++..+...
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~l--~~L-~~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---KL--PSL-VNWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---hc--chh-hcCCCCCchHHHHHHHHHHHH
Confidence 588999999999999999999999997 335777421 11 222 4787663 355666655543
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=54.65 E-value=16 Score=27.46 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=22.7
Q ss_pred ccccc---cceeCCCcEEeecCCCCCCCcCCHHHHHHHHHHH-HhCC
Q 031481 105 TMCFH---PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSL-LGGL 147 (159)
Q Consensus 105 t~i~H---pnI~~~G~icl~~l~~~W~p~~ti~~il~~i~~l-l~~P 147 (159)
|+.|| +||+.+|.||+.... .|.....+.+.++... |.++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 44554 599999999987642 2333333445555433 3344
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=53.65 E-value=14 Score=26.99 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.2
Q ss_pred CCEEEEEEeCCCCCC-CCCCcccccc
Q 031481 81 GLSYKLSLRFPLDYP-FKPPQVKFET 105 (159)
Q Consensus 81 gg~f~~~i~fp~~YP-~~pP~v~f~t 105 (159)
.|.|.|.-.+|-.|| .+||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999988873
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=52.59 E-value=14 Score=28.27 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCcccccc
Q 031481 80 EGLSYKLSLRFPLDYPFKPPQVKFET 105 (159)
Q Consensus 80 egg~f~~~i~fp~~YP~~pP~v~f~t 105 (159)
+.|.|.|+=.||--||.++|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998874
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=49.34 E-value=15 Score=21.29 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHh
Q 031481 35 VTQRLQKELMSLMM 48 (159)
Q Consensus 35 ~~~RL~~El~~l~~ 48 (159)
-.+||++|+.+|..
T Consensus 20 eNrRL~ke~~eLra 33 (44)
T smart00340 20 ENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHh
Confidence 35899999999987
No 43
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=46.46 E-value=70 Score=21.14 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCcccccccccc
Q 031481 65 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH 109 (159)
Q Consensus 65 ~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 109 (159)
.+|.|-+.|+.+.--..-+=++.+.+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999988765555667788889988885 77777777663
No 44
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=45.07 E-value=68 Score=25.17 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCC-CCCCCEEEEEEeCCCCC-----------------
Q 031481 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGT-MYEGLSYKLSLRFPLDY----------------- 94 (159)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~t-pyegg~f~~~i~fp~~Y----------------- 94 (159)
.++..||...++++++ ...+...-|.+.+. |... -| || |.|.+.|.++=
T Consensus 8 ~s~~eR~~e~~~~~k~----------~L~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS 74 (235)
T PF14135_consen 8 KSPAERINEALAEYKK----------ILTSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTS 74 (235)
T ss_pred CCHHHHHHHHHHHHHH----------HHhcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeE
Confidence 3567899888888887 11234445888888 4433 24 34 77777775332
Q ss_pred --CC---CCCcccccc--cccccceeCC
Q 031481 95 --PF---KPPQVKFET--MCFHPNVDQY 115 (159)
Q Consensus 95 --P~---~pP~v~f~t--~i~HpnI~~~ 115 (159)
-. .-|.+.|.| ++.|-..+++
T Consensus 75 ~Y~~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 75 SYRLKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred EEEEecCCceEEEEEeCCceEEEccCCC
Confidence 22 337777775 3677666653
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=40.16 E-value=30 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.8
Q ss_pred CCEEEEEEeCCCCCC-----CCCCcccccc
Q 031481 81 GLSYKLSLRFPLDYP-----FKPPQVKFET 105 (159)
Q Consensus 81 gg~f~~~i~fp~~YP-----~~pP~v~f~t 105 (159)
.|.|.|+=.+|--|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 478999999999999 8999988774
No 46
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=37.95 E-value=1e+02 Score=23.10 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhCC----CCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCccccccc
Q 031481 37 QRLQKELMSLMMSGG----DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 37 ~RL~~El~~l~~~~~----~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
+..-+|++.+.. .. ..|+.+. +.+.=...|++..|+-.|-. -...+++.| .||-..||.|.|..+
T Consensus 8 akFdR~V~~~~~-~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRP-RADAYRMRGWFLI--QASFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhh-hhhHhhhcCeEEE--EccCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEecc
Confidence 334566666654 22 2455543 23333445555545556532 225667777 589999999999876
No 47
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.85 E-value=1.5e+02 Score=22.89 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCCCc
Q 031481 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQ 100 (159)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~~i~~~~~~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~ 100 (159)
....-..+||++|++.+.+ +-...++..|.-+....+.|.+..-.+ ...|.++-.+-|+
T Consensus 115 a~~~k~~~~iq~EIraviR-QItasVtfLP~Le~~ctFdvLiyTdkD-----------~~vP~~W~eS~~~ 173 (203)
T KOG3285|consen 115 ATRVKDLKRIQNEIRAVIR-QITASVTFLPLLEEICTFDVLIYTDKD-----------TEVPEKWDESGPK 173 (203)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhheeecccccceeEEEEEEEeCCC-----------ccCCcchhcCCCe
Confidence 3455678999999999999 777778877776666778777764333 3455555555554
No 48
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.24 E-value=44 Score=25.72 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.4
Q ss_pred CCCEEEEEEeCCCCCCC-----CCCccccc
Q 031481 80 EGLSYKLSLRFPLDYPF-----KPPQVKFE 104 (159)
Q Consensus 80 egg~f~~~i~fp~~YP~-----~pP~v~f~ 104 (159)
+.|.|.|+=.+|-.||. +||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34779999999999998 77777665
No 49
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=21 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.9
Q ss_pred CCcEEeecCCCCCCCcCCHHHHHHHHHHHHh
Q 031481 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLG 145 (159)
Q Consensus 115 ~G~icl~~l~~~W~p~~ti~~il~~i~~ll~ 145 (159)
.+..|++++..-|+|.+|+++-+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999888777766554
No 50
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=31.20 E-value=69 Score=25.44 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=22.0
Q ss_pred cceeCCCcEEeecCCCCCCCc-CCHHHHHHHHHHHHhC
Q 031481 110 PNVDQYGNICLDILQDKWSSA-YDCRTILLSIQSLLGG 146 (159)
Q Consensus 110 pnI~~~G~icl~~l~~~W~p~-~ti~~il~~i~~ll~~ 146 (159)
+||+.+|+||+.... .|. .++.+ +.+....|.+
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 499999999987653 444 34555 6666666653
No 51
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=30.12 E-value=17 Score=33.99 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=0.0
Q ss_pred CEEEEEEeCCCCCCCCCCccccccc
Q 031481 82 LSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 82 g~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
.+=-++|.+|.+||..+|.+.+...
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3455789999999999999877653
No 52
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=29.64 E-value=94 Score=25.10 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=30.1
Q ss_pred CcceEEEEEecCCCCCCCC---CEEEEEEeCC-----CCCCCCCCccccccccc
Q 031481 63 SIFTWIGTIEGGKGTMYEG---LSYKLSLRFP-----LDYPFKPPQVKFETMCF 108 (159)
Q Consensus 63 n~~~w~v~i~Gp~~tpyeg---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 108 (159)
|..-|++....-+....+| ..|+..+.+. -|-||++|.|..+++-|
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 4445777776433333333 3355666654 78899999999998755
No 53
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.40 E-value=58 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=18.9
Q ss_pred CCEEEEEEeCCCCCCC-----CCCccccc
Q 031481 81 GLSYKLSLRFPLDYPF-----KPPQVKFE 104 (159)
Q Consensus 81 gg~f~~~i~fp~~YP~-----~pP~v~f~ 104 (159)
.|.|.|+-.+|--||. +||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 66666554
No 54
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=26.32 E-value=65 Score=27.07 Aligned_cols=24 Identities=13% Similarity=0.675 Sum_probs=20.5
Q ss_pred CEEEEEEeCCCCCCCCCCcccccc
Q 031481 82 LSYKLSLRFPLDYPFKPPQVKFET 105 (159)
Q Consensus 82 g~f~~~i~fp~~YP~~pP~v~f~t 105 (159)
-.|-+.|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 357788889999999999998875
No 55
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=26.01 E-value=3.4e+02 Score=24.82 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEeec----CCCcceEEEEEecCCCCCCCCCEEEEEEeCCCCCCCCC
Q 031481 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPE----GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98 (159)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~~i~~~~~----~~n~~~w~v~i~Gp~~tpyegg~f~~~i~fp~~YP~~p 98 (159)
.+....-|++|+..|.. .|.|.++ ++|--+..|.|. -+.-| .++|..|.+||.-.
T Consensus 617 rq~lp~vlqgElarLD~-----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 617 RQNLPEVLQGELARLDA-----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN 675 (742)
T ss_pred hhhhhHHHHHHHHhhcc-----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc
Confidence 44455678888888875 4455444 233223334443 22223 48999999999864
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=25.29 E-value=92 Score=19.21 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=12.7
Q ss_pred CCCCCcCCHHHHHHHHHHHH
Q 031481 125 DKWSSAYDCRTILLSIQSLL 144 (159)
Q Consensus 125 ~~W~p~~ti~~il~~i~~ll 144 (159)
-+|.|.++|++++.....-.
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 48999999999998876643
No 57
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=23.92 E-value=61 Score=21.25 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 031481 34 SVTQRLQKELMSL 46 (159)
Q Consensus 34 ~~~~RL~~El~~l 46 (159)
+-.|||++||+-|
T Consensus 59 SQLKRiQRdlrGL 71 (76)
T PF08203_consen 59 SQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCC
Confidence 4578999998754
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.39 E-value=86 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.2
Q ss_pred CEEEEEEeCCCCCCCCCCccccccc
Q 031481 82 LSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 82 g~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
-.+.+.+..++.||.+.|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678889999999999999999876
No 59
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=2.5e+02 Score=24.50 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.6
Q ss_pred EEEEEeCCCCCCCC
Q 031481 84 YKLSLRFPLDYPFK 97 (159)
Q Consensus 84 f~~~i~fp~~YP~~ 97 (159)
..+.+.||.+|+..
T Consensus 211 k~i~vtFP~dy~a~ 224 (441)
T COG0544 211 KDIKVTFPEDYHAE 224 (441)
T ss_pred eEEEEEcccccchh
Confidence 55889999999973
No 60
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.52 E-value=70 Score=19.93 Aligned_cols=13 Identities=54% Similarity=0.695 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHh
Q 031481 36 TQRLQKELMSLMM 48 (159)
Q Consensus 36 ~~RL~~El~~l~~ 48 (159)
.+||++||.++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4599999998875
No 61
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.28 E-value=1.5e+02 Score=21.55 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.3
Q ss_pred CCCcceEEEEEecCCCCCCC
Q 031481 61 GESIFTWIGTIEGGKGTMYE 80 (159)
Q Consensus 61 ~~n~~~w~v~i~Gp~~tpye 80 (159)
..|...|.|++.|++|++..
T Consensus 44 PGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred CCCCcceEEEEECCCCccee
Confidence 45667788888998888754
No 62
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=21.10 E-value=1.6e+02 Score=19.86 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCCCEEEEEEeCCCCCCCCCCccccccc
Q 031481 79 YEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (159)
Q Consensus 79 yegg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (159)
-||..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35666788887888999 588888854
No 63
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=20.96 E-value=1.2e+02 Score=26.95 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=20.3
Q ss_pred CCCCEEEEEEeCCC-----CCCCCCCccccccccccccee
Q 031481 79 YEGLSYKLSLRFPL-----DYPFKPPQVKFETMCFHPNVD 113 (159)
Q Consensus 79 yegg~f~~~i~fp~-----~YP~~pP~v~f~t~i~HpnI~ 113 (159)
..||.|.+.+.+.+ .||. .|||||-+
T Consensus 359 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 389 (493)
T PRK05270 359 RRGGKYELDLVLRNNRTSEEHPD---------GIFHPHPE 389 (493)
T ss_pred ecCCeeEEEEEeecCCCccccCC---------ccccCchh
Confidence 67899999999864 4665 68998755
No 64
>PHA03200 uracil DNA glycosylase; Provisional
Probab=20.47 E-value=1.4e+02 Score=24.21 Aligned_cols=79 Identities=20% Similarity=0.052 Sum_probs=41.8
Q ss_pred ceEEEEEecCCCCCCCCCEE-EEEEeCCCCCCCCCCccccccc-----------ccccceeC---CCcEEeecCC--CC-
Q 031481 65 FTWIGTIEGGKGTMYEGLSY-KLSLRFPLDYPFKPPQVKFETM-----------CFHPNVDQ---YGNICLDILQ--DK- 126 (159)
Q Consensus 65 ~~w~v~i~Gp~~tpyegg~f-~~~i~fp~~YP~~pP~v~f~t~-----------i~HpnI~~---~G~icl~~l~--~~- 126 (159)
...+|+|.|-+ ||.+|.- -+-+..+.+++. ||..+=+-+ ..|.+... .|-+.++..- +.
T Consensus 83 ~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtvLTV~~g 159 (255)
T PHA03200 83 EDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLKNVFRELERTVPNFSRPDSGCLDSWCRQGVLLLNTVFTVVHG 159 (255)
T ss_pred hheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHHHHHHHHHhhcCCCCCCCCCChhhHHhCCEEEEeeeeeeeCC
Confidence 35799999966 7776432 234445667765 777553311 12334333 6777766441 11
Q ss_pred --CC-CcCCHHHHHHHHHHHHhC
Q 031481 127 --WS-SAYDCRTILLSIQSLLGG 146 (159)
Q Consensus 127 --W~-p~~ti~~il~~i~~ll~~ 146 (159)
-+ ...+=+.+-..|...+.+
T Consensus 160 k~~SH~~~GWe~FTd~vI~~l~~ 182 (255)
T PHA03200 160 QPGSHEALGWQTLSDRVISRLSE 182 (255)
T ss_pred CcCccccCCHHHHHHHHHHHHHc
Confidence 11 223445555555555553
Done!