BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031482
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 88  AFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVIT 147
             +T S+V++LDDG++WRKYG+K+VK +P PR+YYKC+  GC V+K VER   DP  V+T
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 148 TYEGFHTH 155
           TYEG H H
Sbjct: 67  TYEGKHNH 74


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 52/74 (70%)

Query: 86  RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYV 145
           R+   T++  +I++DG++WRKYG+K VK SP PR+YY+CS  GCPVKK VER   D   +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 146 ITTYEGFHTHQSNP 159
           ITTYEG H H   P
Sbjct: 62  ITTYEGKHDHDMPP 75


>pdb|2CFF|A Chain A, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
           Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase
           Mutant D127v (Ec 3.1.3.15, Hisa)
 pdb|2CFF|B Chain B, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
           Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase
           Mutant D127v (Ec 3.1.3.15, Hisa)
          Length = 241

 Score = 29.3 bits (64), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 45  YVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERVA-----FKTKSDVEILD 99
           Y ++PV    +++E G T  H    SN+  +SG E  PV E+++      +    +  LD
Sbjct: 28  YEKDPVELVEKLIEEGFTLIHVVDLSNAIENSG-ENLPVLEKLSEFAEHIQIGGGIRSLD 86

Query: 100 DGFKWRKYG 108
              K RK G
Sbjct: 87  YAEKLRKLG 95


>pdb|2W79|A Chain A, Establishing Wild-Type Levels Of Catalytic Activity On
           Natural And Artificial (Ba)8-Barrel Protein Scaffolds
 pdb|2W79|B Chain B, Establishing Wild-Type Levels Of Catalytic Activity On
           Natural And Artificial (Ba)8-Barrel Protein Scaffolds
          Length = 241

 Score = 29.3 bits (64), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 45  YVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERVA-----FKTKSDVEILD 99
           Y ++PV    +++E G T  H    SN+  +SG E  PV E+++      +    +  LD
Sbjct: 28  YEKDPVELVEKLIEEGFTLIHVVDLSNAIENSG-ENLPVLEKLSEFAEYIQIGGGIRSLD 86

Query: 100 DGFKWRKYG 108
              K RK G
Sbjct: 87  YAEKLRKLG 95


>pdb|1QO2|A Chain A, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
           Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase (Ec
           3.1.3.15, Hisa)
 pdb|1QO2|B Chain B, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
           Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase (Ec
           3.1.3.15, Hisa)
          Length = 241

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 45  YVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERVA-----FKTKSDVEILD 99
           Y ++PV    +++E G T  H    SN+  +SG E  PV E+++      +    +  LD
Sbjct: 28  YEKDPVELVEKLIEEGFTLIHVVDLSNAIENSG-ENLPVLEKLSEFAEHIQIGGGIRSLD 86

Query: 100 DGFKWRKYG 108
              K RK G
Sbjct: 87  YAEKLRKLG 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.131    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,657,709
Number of Sequences: 62578
Number of extensions: 245995
Number of successful extensions: 397
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)