Query 031482
Match_columns 159
No_of_seqs 173 out of 665
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 23:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 4.3E-39 1.5E-43 229.3 5.5 74 86-159 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 9.4E-39 3.2E-43 228.5 4.5 75 85-159 4-78 (78)
3 2rpr_A Flywch-type zinc finger 77.2 0.96 3.3E-05 31.0 1.5 50 96-158 22-74 (87)
4 1cz6_A Protein (androctonin); 36.2 8.2 0.00028 21.6 0.2 8 120-127 16-23 (26)
5 3ed7_A Tsase, TS, thymidylate 19.4 22 0.00076 30.2 -0.1 11 100-110 117-127 (295)
6 1odh_A MGCM1; transcription fa 18.9 1.1E+02 0.0036 24.4 3.7 35 122-159 123-158 (174)
7 3kgb_A Thymidylate synthase 1/ 18.2 23 0.00077 30.2 -0.3 11 100-110 114-124 (294)
8 1ter_A Tertiapin; toxin; NMR { 16.7 35 0.0012 19.1 0.3 11 102-112 13-23 (26)
9 3qj7_A TS, tsase, thymidylate 12.3 39 0.0013 28.2 -0.4 21 100-120 95-128 (264)
10 3nrr_A Dihydrofolate reductase 11.6 47 0.0016 30.1 -0.1 10 101-110 338-347 (515)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-39 Score=229.28 Aligned_cols=74 Identities=54% Similarity=1.061 Sum_probs=72.1
Q ss_pred ceeeEccCCcccCCcchhhhhhccccccCCCCCCCccccccCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 031482 86 RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP 159 (159)
Q Consensus 86 rv~~~t~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~p 159 (159)
|++++|.+++++++|||+|||||||.|||+++||+||||++.||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=9.4e-39 Score=228.51 Aligned_cols=75 Identities=52% Similarity=1.020 Sum_probs=69.6
Q ss_pred cceeeEccCCcccCCcchhhhhhccccccCCCCCCCccccccCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 031482 85 ERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP 159 (159)
Q Consensus 85 ~rv~~~t~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~p 159 (159)
.+++++|.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999885
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=77.21 E-value=0.96 Score=31.00 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=31.5
Q ss_pred ccCCcchhhhhhccccccCCCCCCCcccccc---CCCCcccceeecCCCCcEEEEEEeccCCCCCC
Q 031482 96 EILDDGFKWRKYGKKMVKNSPNPRNYYKCSV---DGCPVKKRVERDRDDPSYVITTYEGFHTHQSN 158 (159)
Q Consensus 96 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~---~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~ 158 (159)
.++-|||.-.+--+ ...+.|.+|+. .+|.|+-.... ++ + .-.+.|||+..
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 35678987764221 12357999996 58999854432 22 2 24688999753
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=36.22 E-value=8.2 Score=21.64 Aligned_cols=8 Identities=50% Similarity=1.144 Sum_probs=6.5
Q ss_pred CccccccC
Q 031482 120 NYYKCSVD 127 (159)
Q Consensus 120 sYYrCs~~ 127 (159)
+||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999963
No 5
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=19.38 E-value=22 Score=30.24 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=8.9
Q ss_pred cchhhhhhccc
Q 031482 100 DGFKWRKYGKK 110 (159)
Q Consensus 100 DGy~WRKYGQK 110 (159)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 47999999864
No 6
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=18.87 E-value=1.1e+02 Score=24.38 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=20.4
Q ss_pred ccccc-CCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 031482 122 YKCSV-DGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP 159 (159)
Q Consensus 122 YrCs~-~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~p 159 (159)
+.|.- .|=||+ .+-|..++. +...=.|.|+|+.||
T Consensus 123 ~~Crgh~GyPVT-hFWrh~~~~--ifFqaKG~HDHpRPe 158 (174)
T 1odh_A 123 IPCRGHGGFPVT-NFWRHDGRF--IFFQSKGEHDHPRPE 158 (174)
T ss_dssp ECCCTBTTBCCE-EEEEECSSB--EEEEEECCCCSCCCC
T ss_pred EeccCcCCCcce-EEEEEcCCE--EEEecccccCCCCCC
Confidence 44442 344553 355543333 334578999999996
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=18.20 E-value=23 Score=30.17 Aligned_cols=11 Identities=45% Similarity=1.386 Sum_probs=8.8
Q ss_pred cchhhhhhccc
Q 031482 100 DGFKWRKYGKK 110 (159)
Q Consensus 100 DGy~WRKYGQK 110 (159)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 47899999864
No 8
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=16.72 E-value=35 Score=19.06 Aligned_cols=11 Identities=45% Similarity=0.888 Sum_probs=7.7
Q ss_pred hhhhhhccccc
Q 031482 102 FKWRKYGKKMV 112 (159)
Q Consensus 102 y~WRKYGQK~I 112 (159)
..|+|.|.|..
T Consensus 13 mcwkkcgkk~~ 23 (26)
T 1ter_A 13 MCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHhCcccc
Confidence 46999998865
No 9
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=12.31 E-value=39 Score=28.24 Aligned_cols=21 Identities=24% Similarity=0.801 Sum_probs=15.3
Q ss_pred cchhhhhhcc-------------ccccCCCCCCC
Q 031482 100 DGFKWRKYGK-------------KMVKNSPNPRN 120 (159)
Q Consensus 100 DGy~WRKYGQ-------------K~Ikgs~~pRs 120 (159)
=|++||.++. ..||.+|+.|-
T Consensus 95 YG~qwr~~~~~~g~~~DQi~~vI~~Lk~nP~SRR 128 (264)
T 3qj7_A 95 YGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRR 128 (264)
T ss_dssp HHHHHHHEECTTSCEECHHHHHHHHHHHCTTCSC
T ss_pred cchhheecCCCCcccHHHHHHHHHHHhcCCCCce
Confidence 3689999864 34677888884
No 10
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=11.64 E-value=47 Score=30.14 Aligned_cols=10 Identities=50% Similarity=1.567 Sum_probs=8.0
Q ss_pred chhhhhhccc
Q 031482 101 GFKWRKYGKK 110 (159)
Q Consensus 101 Gy~WRKYGQK 110 (159)
|++||.+|.+
T Consensus 338 G~qwr~~~~~ 347 (515)
T 3nrr_A 338 GFQWRHFGAE 347 (515)
T ss_dssp HHHHHHBTCC
T ss_pred hhheeeCCCc
Confidence 5899999864
Done!