BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031483
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
N+L+P V + ++TEEED +I HK+LGNRWA IAK +PGRTDN VKN+WNS + +K+
Sbjct: 51 NHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 6 PNVNRGNFTEEEDDLIIRLHKLLGNR-WALIAKRVPGRTDNQVKNYWNSHL 55
P++ +G +T+EED +I L K G + W LIAK + GR Q + W++HL
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
N+L+P V + ++TEEED +I + HK LGNRWA IAK +PGRTDN VKN+WNS + +K+
Sbjct: 71 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 4 LSPNVNRGNFTEEEDDLII-RLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHL 55
L+P +N+G +T+EED +I + K RW+ IAK + GR Q + W++HL
Sbjct: 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
N+L+P V + ++TEEED +I + HK LGNRWA IAK +PGRTDN +KN+WNS + +K+
Sbjct: 102 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 4 LSPNVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHL 55
L+P + +G +T+EED +I+L + G RW++IAK + GR Q + W++HL
Sbjct: 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 7 NVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
++ + +T EED+ + +L + G + W +IA +P RTD Q ++ W L+ +L
Sbjct: 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPEL 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
N+L+P V + ++TEEED +I + HK LGNRWA IAK +PGRTDN +KN+WNS + +K+
Sbjct: 48 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHL 55
+G +T+EED +I+L + G RW++IAK + GR Q + W++HL
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
N+L+P V + ++TEEED +I + HK LGNRWA IAK +PGRTDN +KN+WNS + +K+
Sbjct: 48 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHL 55
+G +T+EED +I+L + G RW++IAK + GR Q + W++HL
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 8 VNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
V + ++TEEED +I + HK LGNRWA IAK +PGRTDN +KN+WNS + +K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 41/52 (78%)
Query: 8 VNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
V + ++TEEED ++ + HK LGNRWA IAK +PGRTDN +KN+WNS + +K+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 1 MNYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKLG 60
N+L P V + +T EED+ I R + LG++W++IAK +PGRTDN +KN WNS +SK++
Sbjct: 45 FNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 10 RGNFTEEEDDLIIRLHKLLGNR-WALIAKRVPGRTDNQVKNYWNSHL 55
+G FTE EDDLI K G + W I +P R+ Q + W +HL
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKLGI 61
NYL+P+++ +T EED L+++ + G +WA+IAK PGRTD +KN W + +S KLGI
Sbjct: 54 NYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT-ISNKLGI 112
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 8 VNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56
+ FT EED+++ R G+ W +IA P R Q ++ W ++L+
Sbjct: 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 43.5 bits (101), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLS 56
+G +T+EED +I+L + G RW++IAK + GR Q + W++HL+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 43.1 bits (100), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLS 56
+G +T+EED +I+L + G RW++IAK + GR Q + W++HL+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHL 55
+G +T+EED +I L + G RW++IAK + GR Q + W++HL
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In
Complex With Mre-1MRE-2r Dna
Length = 107
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYW 51
NY++P + ++ EED L+ + + G +W I+K + R+DN ++N W
Sbjct: 45 NYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 6 PNVNRGNFTEEEDDLIIRLHKLLGNR------WALIAKRVPGRTDNQVKNYWNSHLSKKL 59
P+ N+ +FT+EED+ I+ + + R + I+ VP T N +++ + +LSK+L
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 12 NFTEEEDDLIIRLHKLLGNR-WALIAKRVPGRTDNQVKNYWNSHLS 56
+T EED+ + L + G + W +A P RTD Q + W LS
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 12 NFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59
+T EE +L + G RW I+K + RT QVK+Y + K+
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 58
>pdb|3UKG|A Chain A, Crystal Structure Of Rap1DNA COMPLEX
Length = 242
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 10 RGNFTEEEDDLIIRLHKLLGNR------WALIAKRVPGRTDNQVKNYWNSHLSKKL 59
+ +FT+EED+ I+ + + R + I+ VP T N +++ + +LSK+L
Sbjct: 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 8 VNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLS 56
+ + +T EED+ + +L + G + W +IA +P RTD Q ++ W L+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 8 VNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLS 56
+ + +T EED+ + +L + G + W +IA +P RTD Q ++ W L+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 66
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 12 NFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57
++ EE++ ++ L KL+ +W IA + GRT Q ++ L K
Sbjct: 11 EWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDK 55
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 30 NRWALIAKRVPGRTDNQVKNYW 51
+RWA +A+ V GRT +VK ++
Sbjct: 32 DRWANVARAVEGRTPEEVKKHY 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,112,427
Number of Sequences: 62578
Number of extensions: 203366
Number of successful extensions: 346
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 43
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)