Query 031483
Match_columns 159
No_of_seqs 219 out of 1644
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 23:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dim_A Cell division cycle 5-l 99.9 6.6E-22 2.3E-26 132.7 7.3 66 4-88 3-69 (70)
2 2llk_A Cyclin-D-binding MYB-li 99.8 6.7E-22 2.3E-26 134.3 5.5 53 1-54 14-66 (73)
3 2din_A Cell division cycle 5-l 99.8 5.2E-22 1.8E-26 131.8 4.4 58 2-60 1-58 (66)
4 2d9a_A B-MYB, MYB-related prot 99.8 9.8E-21 3.4E-25 123.3 6.7 55 5-59 3-58 (60)
5 1h8a_C AMV V-MYB, MYB transfor 99.8 1.3E-20 4.6E-25 139.3 6.9 76 1-95 18-94 (128)
6 2cu7_A KIAA1915 protein; nucle 99.8 2.1E-20 7.1E-25 126.1 7.2 58 4-61 3-60 (72)
7 1gv2_A C-MYB, MYB proto-oncoge 99.8 2.5E-20 8.6E-25 133.3 6.7 58 2-59 48-105 (105)
8 3zqc_A MYB3; transcription-DNA 99.8 4.5E-20 1.5E-24 137.2 7.2 66 2-67 46-111 (131)
9 1guu_A C-MYB, MYB proto-oncoge 99.8 6.1E-20 2.1E-24 116.2 6.3 51 8-58 1-52 (52)
10 1gvd_A MYB proto-oncogene prot 99.8 9.4E-20 3.2E-24 115.4 6.5 51 8-58 1-52 (52)
11 2k9n_A MYB24; R2R3 domain, DNA 99.8 4.2E-20 1.4E-24 133.0 5.1 58 2-59 45-102 (107)
12 1ity_A TRF1; helix-turn-helix, 99.8 1.6E-19 5.3E-24 120.8 7.5 59 2-60 2-63 (69)
13 1h89_C C-MYB, MYB proto-oncoge 99.8 1.3E-19 4.3E-24 138.5 7.5 75 2-95 50-125 (159)
14 1h8a_C AMV V-MYB, MYB transfor 99.8 1.6E-19 5.3E-24 133.6 6.5 58 2-59 71-128 (128)
15 1x41_A Transcriptional adaptor 99.8 4E-19 1.4E-23 116.0 6.0 54 5-58 3-57 (60)
16 1gv2_A C-MYB, MYB proto-oncoge 99.8 7.3E-19 2.5E-23 125.7 7.1 70 7-95 1-71 (105)
17 3osg_A MYB21; transcription-DN 99.8 8.3E-19 2.8E-23 129.6 7.4 74 4-96 5-78 (126)
18 3osg_A MYB21; transcription-DN 99.8 4.8E-19 1.6E-23 130.9 5.8 57 2-58 54-110 (126)
19 1w0t_A Telomeric repeat bindin 99.8 1E-18 3.5E-23 111.2 6.3 50 9-58 1-53 (53)
20 1h89_C C-MYB, MYB proto-oncoge 99.7 1.8E-18 6.1E-23 132.1 6.3 58 2-59 102-159 (159)
21 2yum_A ZZZ3 protein, zinc fing 99.7 3.3E-18 1.1E-22 115.8 6.0 56 5-60 3-64 (75)
22 3sjm_A Telomeric repeat-bindin 99.7 4.3E-18 1.5E-22 112.7 6.3 53 7-59 8-63 (64)
23 2k9n_A MYB24; R2R3 domain, DNA 99.7 4.7E-18 1.6E-22 122.2 6.3 67 10-95 1-68 (107)
24 2ltp_A Nuclear receptor corepr 99.6 3.2E-19 1.1E-23 125.1 0.0 56 3-58 9-64 (89)
25 2elk_A SPCC24B10.08C protein; 99.7 8.8E-18 3E-22 108.9 6.1 52 4-55 3-56 (58)
26 3zqc_A MYB3; transcription-DNA 99.7 1.1E-17 3.6E-22 124.3 6.9 68 10-96 2-70 (131)
27 2cqr_A RSGI RUH-043, DNAJ homo 99.6 3.5E-16 1.2E-20 106.1 5.4 53 5-57 13-69 (73)
28 1ign_A Protein (RAP1); RAP1,ye 99.6 6.1E-16 2.1E-20 125.4 5.0 55 6-60 4-64 (246)
29 2juh_A Telomere binding protei 99.6 1.2E-15 4.2E-20 112.5 6.0 54 4-57 11-69 (121)
30 2yus_A SWI/SNF-related matrix- 99.6 1.1E-15 3.9E-20 104.9 4.5 48 7-54 15-62 (79)
31 1x58_A Hypothetical protein 49 99.5 1.2E-14 4.1E-19 95.3 6.1 51 8-58 6-59 (62)
32 2ckx_A NGTRF1, telomere bindin 99.5 1E-14 3.4E-19 101.1 5.6 49 11-59 1-54 (83)
33 2aje_A Telomere repeat-binding 99.5 2.4E-14 8.1E-19 103.3 6.6 55 5-59 8-67 (105)
34 2roh_A RTBP1, telomere binding 99.5 3.4E-14 1.2E-18 104.9 7.1 54 5-58 26-84 (122)
35 2cjj_A Radialis; plant develop 99.4 7.7E-14 2.7E-18 98.6 5.0 50 9-58 7-60 (93)
36 2eqr_A N-COR1, N-COR, nuclear 99.3 5.2E-12 1.8E-16 82.3 6.0 48 9-56 11-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 99.1 7.1E-11 2.4E-15 79.6 5.0 52 6-58 4-59 (72)
38 3hm5_A DNA methyltransferase 1 99.1 1.4E-10 4.6E-15 81.8 4.7 54 2-59 26-84 (93)
39 2iw5_B Protein corest, REST co 99.0 1.7E-10 5.9E-15 92.8 5.2 49 9-57 132-180 (235)
40 1wgx_A KIAA1903 protein; MYB D 98.9 3E-09 1E-13 71.8 7.3 51 9-59 7-61 (73)
41 1fex_A TRF2-interacting telome 98.8 6.9E-09 2.3E-13 67.2 5.0 47 10-56 2-58 (59)
42 1ug2_A 2610100B20RIK gene prod 98.5 6.6E-08 2.3E-12 67.5 4.5 47 11-57 34-83 (95)
43 2yqk_A Arginine-glutamic acid 98.5 2.1E-07 7.3E-12 60.7 6.5 50 5-54 4-54 (63)
44 2lr8_A CAsp8-associated protei 97.9 1.3E-08 4.3E-13 67.6 0.0 44 12-56 16-62 (70)
45 4eef_G F-HB80.4, designed hema 98.4 9E-08 3.1E-12 64.5 1.7 43 10-52 20-66 (74)
46 4iej_A DNA methyltransferase 1 98.1 3.4E-06 1.2E-10 59.2 5.2 51 9-59 29-84 (93)
47 4a69_C Nuclear receptor corepr 98.1 3.7E-06 1.3E-10 59.0 5.4 44 10-53 43-86 (94)
48 2xag_B REST corepressor 1; ami 98.1 2.6E-06 9E-11 75.1 5.5 48 9-56 379-426 (482)
49 2crg_A Metastasis associated p 98.1 9.6E-06 3.3E-10 53.9 6.4 44 10-53 8-52 (70)
50 1ign_A Protein (RAP1); RAP1,ye 97.9 9.6E-06 3.3E-10 65.7 4.1 28 31-58 173-200 (246)
51 2ebi_A DNA binding protein GT- 97.5 6.7E-05 2.3E-09 51.1 3.8 56 9-64 3-72 (86)
52 1irz_A ARR10-B; helix-turn-hel 96.4 0.0085 2.9E-07 39.1 6.0 49 6-54 3-56 (64)
53 1ofc_X ISWI protein; nuclear p 96.1 0.0058 2E-07 51.0 5.0 52 6-57 208-275 (304)
54 2juh_A Telomere binding protei 96.1 0.00085 2.9E-08 49.0 -0.1 31 4-34 72-103 (121)
55 2y9y_A Imitation switch protei 95.1 0.03 1E-06 47.9 5.7 49 9-57 227-291 (374)
56 1ofc_X ISWI protein; nuclear p 95.0 0.033 1.1E-06 46.4 5.6 48 10-57 110-158 (304)
57 2xag_B REST corepressor 1; ami 94.4 0.0071 2.4E-07 53.3 0.0 44 10-53 189-232 (482)
58 4b4c_A Chromodomain-helicase-D 93.7 0.066 2.3E-06 41.3 4.4 47 10-56 134-195 (211)
59 4b4c_A Chromodomain-helicase-D 92.3 0.14 4.7E-06 39.5 4.3 51 6-56 3-58 (211)
60 2xb0_X Chromo domain-containin 92.1 0.094 3.2E-06 42.9 3.2 27 11-37 169-196 (270)
61 2xb0_X Chromo domain-containin 81.7 2.9 0.0001 34.0 6.1 47 10-56 3-54 (270)
62 2li6_A SWI/SNF chromatin-remod 81.6 1 3.4E-05 31.9 2.9 38 20-57 53-98 (116)
63 2jrz_A Histone demethylase jar 78.8 2.2 7.6E-05 30.1 4.0 38 20-57 44-93 (117)
64 2lm1_A Lysine-specific demethy 78.3 2.5 8.5E-05 29.1 4.0 38 20-57 48-97 (107)
65 2llk_A Cyclin-D-binding MYB-li 77.5 0.57 1.9E-05 30.9 0.4 30 47-95 9-38 (73)
66 2cxy_A BAF250B subunit, HBAF25 75.9 2.9 0.0001 29.8 3.9 38 20-57 55-104 (125)
67 2eqy_A RBP2 like, jumonji, at 75.4 3.1 0.0001 29.6 3.9 38 20-57 46-95 (122)
68 2o8x_A Probable RNA polymerase 71.6 3.5 0.00012 25.1 3.1 40 16-56 18-57 (70)
69 2jxj_A Histone demethylase jar 70.2 2 6.9E-05 29.1 1.8 38 20-57 40-89 (96)
70 1kkx_A Transcription regulator 69.9 1.5 5.3E-05 31.4 1.2 38 20-57 52-97 (123)
71 2kk0_A AT-rich interactive dom 69.3 5.5 0.00019 29.1 4.2 39 20-58 68-119 (145)
72 1ig6_A MRF-2, modulator recogn 68.5 3.2 0.00011 28.7 2.6 38 20-57 37-87 (107)
73 1c20_A DEAD ringer protein; DN 68.0 5.9 0.0002 28.2 4.0 38 20-57 56-106 (128)
74 1ku3_A Sigma factor SIGA; heli 67.7 4.7 0.00016 25.2 3.1 40 16-56 13-56 (73)
75 2y9y_A Imitation switch protei 65.2 15 0.00053 31.2 6.6 47 11-57 124-172 (374)
76 2p7v_B Sigma-70, RNA polymeras 65.0 4.9 0.00017 24.7 2.7 41 16-57 8-52 (68)
77 2rq5_A Protein jumonji; develo 63.9 7.6 0.00026 27.7 3.9 38 20-57 46-96 (121)
78 3hug_A RNA polymerase sigma fa 58.7 8 0.00027 25.2 3.1 40 16-56 40-79 (92)
79 2yqf_A Ankyrin-1; death domain 55.8 26 0.00088 24.0 5.4 40 9-49 9-48 (111)
80 2q1z_A RPOE, ECF SIGE; ECF sig 53.5 12 0.0004 26.8 3.5 37 19-56 141-177 (184)
81 1or7_A Sigma-24, RNA polymeras 48.1 18 0.00062 25.9 3.8 37 19-56 146-182 (194)
82 3ulq_B Transcriptional regulat 47.1 26 0.0009 23.0 4.2 48 7-57 24-71 (90)
83 1tty_A Sigma-A, RNA polymerase 46.2 17 0.0006 23.4 3.1 41 16-57 21-65 (87)
84 2of5_H Leucine-rich repeat and 44.5 19 0.00064 25.1 3.2 31 18-49 13-43 (118)
85 1x3u_A Transcriptional regulat 42.7 27 0.00094 21.4 3.6 41 13-56 17-57 (79)
86 2o71_A Death domain-containing 42.1 25 0.00085 24.6 3.6 29 20-49 26-54 (115)
87 2of5_A Death domain-containing 41.5 23 0.00079 24.7 3.3 29 20-49 26-54 (114)
88 1xsv_A Hypothetical UPF0122 pr 41.1 28 0.00096 23.8 3.7 38 17-55 29-66 (113)
89 3c57_A Two component transcrip 39.8 27 0.00094 22.9 3.4 43 12-57 27-69 (95)
90 1wxp_A THO complex subunit 1; 39.7 34 0.0012 23.4 3.9 31 18-49 18-48 (110)
91 1rp3_A RNA polymerase sigma fa 37.1 31 0.0011 25.3 3.6 36 19-55 193-228 (239)
92 3mzy_A RNA polymerase sigma-H 36.6 27 0.00091 23.9 3.0 30 26-56 121-150 (164)
93 3i4p_A Transcriptional regulat 35.4 30 0.001 24.8 3.2 43 16-59 3-46 (162)
94 1je8_A Nitrate/nitrite respons 34.9 38 0.0013 21.5 3.4 43 12-57 21-63 (82)
95 2jpc_A SSRB; DNA binding prote 33.6 55 0.0019 18.9 3.8 37 18-56 3-39 (61)
96 1fse_A GERE; helix-turn-helix 33.4 57 0.002 19.5 3.9 43 11-56 10-52 (74)
97 1ntc_A Protein (nitrogen regul 33.0 80 0.0027 20.5 4.8 34 16-50 51-84 (91)
98 3e7l_A Transcriptional regulat 33.0 61 0.0021 19.5 4.0 34 16-50 19-52 (63)
99 1tc3_C Protein (TC3 transposas 32.9 58 0.002 17.3 4.3 38 12-51 5-42 (51)
100 2rnj_A Response regulator prot 31.8 36 0.0012 21.9 2.9 42 13-57 30-71 (91)
101 1s7o_A Hypothetical UPF0122 pr 31.0 48 0.0016 22.7 3.6 41 13-55 23-63 (113)
102 3cz6_A DNA-binding protein RAP 28.5 35 0.0012 25.8 2.6 17 6-22 110-126 (168)
103 2dbb_A Putative HTH-type trans 25.8 93 0.0032 21.6 4.4 43 16-59 9-52 (151)
104 2e1c_A Putative HTH-type trans 25.1 82 0.0028 22.9 4.1 43 16-59 27-70 (171)
105 1p4w_A RCSB; solution structur 23.4 1.1E+02 0.0039 20.2 4.3 44 10-56 32-75 (99)
106 1fad_A Protein (FADD protein); 23.0 39 0.0013 22.3 1.8 33 16-49 12-44 (99)
107 1l0o_C Sigma factor; bergerat 22.5 18 0.00063 26.6 0.0 27 27-54 212-238 (243)
108 2cyy_A Putative HTH-type trans 21.0 1E+02 0.0035 21.4 3.9 42 17-59 8-50 (151)
109 2lfw_A PHYR sigma-like domain; 20.3 50 0.0017 23.2 2.0 39 16-55 96-134 (157)
No 1
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.6e-22 Score=132.68 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCCCCC
Q 031483 4 LSPNVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKIQP 82 (159)
Q Consensus 4 L~P~lkk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~ 82 (159)
-.|.+++++||+|||++|+++|.+|| ++|..||.+|||||+.||++||+++|++.+ ++.+
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i-------------------~~~~ 63 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI-------------------KKTE 63 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS-------------------CCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc-------------------cCCC
Confidence 36899999999999999999999999 799999999999999999999999999999 5677
Q ss_pred CChhhh
Q 031483 83 ITDQNA 88 (159)
Q Consensus 83 ~t~~e~ 88 (159)
||.+|+
T Consensus 64 wt~eEd 69 (70)
T 2dim_A 64 WSGPSS 69 (70)
T ss_dssp SCCSCC
T ss_pred CChHhc
Confidence 777765
No 2
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-22 Score=134.35 Aligned_cols=53 Identities=26% Similarity=0.424 Sum_probs=46.8
Q ss_pred CCcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHh
Q 031483 1 MNYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSH 54 (159)
Q Consensus 1 ~NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~ 54 (159)
+|||+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999 99999999999964
No 3
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.2e-22 Score=131.79 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=56.1
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhccccC
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKLG 60 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~ 60 (159)
+||+|.+++++||+|||++|+++|..||.+|..||. |||||++|||+||+.+|++.++
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 589999999999999999999999999999999999 9999999999999999999884
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=9.8e-21 Score=123.30 Aligned_cols=55 Identities=31% Similarity=0.530 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
+|.+++++||+|||++|+++|.+|| ++|+.||.+|||||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 6899999999999999999999999 599999999999999999999999999987
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=1.3e-20 Score=139.34 Aligned_cols=76 Identities=32% Similarity=0.596 Sum_probs=66.8
Q ss_pred CCcCCCCCCCCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCC
Q 031483 1 MNYLSPNVNRGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQK 79 (159)
Q Consensus 1 ~NyL~P~lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~ 79 (159)
.|||+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||+++|++.+ +
T Consensus 18 ~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~-------------------~ 78 (128)
T 1h8a_C 18 QKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV-------------------K 78 (128)
T ss_dssp ----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS-------------------C
T ss_pred HHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc-------------------c
Confidence 379999999999999999999999999996 69999999999999999999999999887 5
Q ss_pred CCCCChhhhcccCCCC
Q 031483 80 IQPITDQNANAIIDPC 95 (159)
Q Consensus 80 ~~~~t~~e~~~l~~~~ 95 (159)
.++||.+|+..|+...
T Consensus 79 ~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAH 94 (128)
T ss_dssp CSCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 7899999998876544
No 6
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.82 E-value=2.1e-20 Score=126.13 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhccccCC
Q 031483 4 LSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKLGI 61 (159)
Q Consensus 4 L~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~ 61 (159)
++|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999998743
No 7
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.81 E-value=2.5e-20 Score=133.34 Aligned_cols=58 Identities=57% Similarity=0.955 Sum_probs=54.2
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
|||+|.+++++||+|||++|+++|.+||++|+.||++|||||++||++||+.++++++
T Consensus 48 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 48 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred hccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999999999999999998864
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.80 E-value=4.5e-20 Score=137.21 Aligned_cols=66 Identities=44% Similarity=0.766 Sum_probs=61.4
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCC
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRG 67 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~ 67 (159)
|||+|.+++++||+|||++|+++|.+||++|+.||++|||||+++|++||+.++++.+....+...
T Consensus 46 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 46 NHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred hccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 799999999999999999999999999999999999999999999999999999999965555443
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.80 E-value=6.1e-20 Score=116.22 Aligned_cols=51 Identities=31% Similarity=0.618 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 8 VNRGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 8 lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
|++++||+|||++|+++|.+||. +|+.||.+|||||+.||++||+++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998 8999999999999999999999999873
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.80 E-value=9.4e-20 Score=115.45 Aligned_cols=51 Identities=37% Similarity=0.778 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 8 VNRGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 8 lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
|++++||+|||++|+++|.+||. +|..||.+|||||+.|||+||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 68999999999999999999997 6999999999999999999999999873
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.79 E-value=4.2e-20 Score=133.00 Aligned_cols=58 Identities=28% Similarity=0.538 Sum_probs=56.2
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
|||+|.+++++||+|||.+|+++|.+||++|+.||++|||||+++||+||+.++++..
T Consensus 45 ~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 45 NYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence 7999999999999999999999999999999999999999999999999999998865
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.79 E-value=1.6e-19 Score=120.81 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=55.6
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCC--CCCHHHHHHHHHHhhccccC
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVP--GRTDNQVKNYWNSHLSKKLG 60 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~knRw~~~l~~~~~ 60 (159)
|...|..++++||+|||++|+++|.+|| ++|+.||.+|| |||+.|||+||+++|++.+.
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 5678999999999999999999999999 69999999999 99999999999999999984
No 13
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.79 E-value=1.3e-19 Score=138.47 Aligned_cols=75 Identities=32% Similarity=0.641 Sum_probs=69.3
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCCC
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKI 80 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~ 80 (159)
|||+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|++.+ +.
T Consensus 50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~-------------------~~ 110 (159)
T 1h89_C 50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV-------------------KK 110 (159)
T ss_dssp TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTS-------------------CC
T ss_pred HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccc-------------------cc
Confidence 89999999999999999999999999996 69999999999999999999999998877 57
Q ss_pred CCCChhhhcccCCCC
Q 031483 81 QPITDQNANAIIDPC 95 (159)
Q Consensus 81 ~~~t~~e~~~l~~~~ 95 (159)
.+||.+|+..|+...
T Consensus 111 ~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 111 TSWTEEEDRIIYQAH 125 (159)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHH
Confidence 899999998776543
No 14
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.78 E-value=1.6e-19 Score=133.58 Aligned_cols=58 Identities=59% Similarity=0.957 Sum_probs=55.0
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
|||+|.+++++||+|||++|+++|.+||++|+.||++|||||+++||+||+.++++++
T Consensus 71 ~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 71 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999999999999999998764
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=4e-19 Score=115.95 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=51.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
+|.+.+++||+|||++|+++|.+|| ++|..||++|||||+.||++||+.+|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 6889999999999999999999999 79999999999999999999999998764
No 16
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.76 E-value=7.3e-19 Score=125.69 Aligned_cols=70 Identities=31% Similarity=0.629 Sum_probs=64.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCCCCCCCh
Q 031483 7 NVNRGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKIQPITD 85 (159)
Q Consensus 7 ~lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~t~ 85 (159)
++++++||+|||++|+++|..||. +|..||..|||||+.||+.||..+|.+.+ +.++||+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~-------------------~~~~Wt~ 61 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV-------------------KKTSWTE 61 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCC-------------------CCCCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcc-------------------cccCCCH
Confidence 478999999999999999999997 69999999999999999999999998877 5789999
Q ss_pred hhhcccCCCC
Q 031483 86 QNANAIIDPC 95 (159)
Q Consensus 86 ~e~~~l~~~~ 95 (159)
+|+..|+...
T Consensus 62 eEd~~L~~~~ 71 (105)
T 1gv2_A 62 EEDRIIYQAH 71 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 17
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.76 E-value=8.3e-19 Score=129.64 Aligned_cols=74 Identities=23% Similarity=0.472 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCCCCCC
Q 031483 4 LSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKIQPI 83 (159)
Q Consensus 4 L~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 83 (159)
..+.+++++||+|||++|+++|..||.+|..||..|||||+.||+.||.++|.+.+ +.++|
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~-------------------~~~~W 65 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI-------------------SHTPW 65 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS-------------------CCSCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc-------------------ccccC
Confidence 45788999999999999999999999999999999999999999999999999888 56799
Q ss_pred ChhhhcccCCCCC
Q 031483 84 TDQNANAIIDPCD 96 (159)
Q Consensus 84 t~~e~~~l~~~~~ 96 (159)
|.+|+..|+....
T Consensus 66 T~eEd~~L~~~v~ 78 (126)
T 3osg_A 66 TAEEDALLVQKIQ 78 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988766543
No 18
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.76 E-value=4.8e-19 Score=130.93 Aligned_cols=57 Identities=42% Similarity=0.758 Sum_probs=54.8
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
|||+|.+++++||+|||++|+++|.+||++|+.||++|||||+++||+||+.++++.
T Consensus 54 ~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 54 NYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred hhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999999999999999888764
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.76 E-value=1e-18 Score=111.21 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCC--CCCHHHHHHHHHHhhccc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVP--GRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~knRw~~~l~~~ 58 (159)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.||++||.++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 589999999999999999999 69999999999 999999999999998753
No 20
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.74 E-value=1.8e-18 Score=132.06 Aligned_cols=58 Identities=57% Similarity=0.955 Sum_probs=55.0
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
|||+|.+++++||+|||.+|++++.+||++|+.||++|||||+++||+||+.++++++
T Consensus 102 ~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 102 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999999999999999998864
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=115.85 Aligned_cols=56 Identities=25% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CCchhhhhcCCCCCHHHHHHHHHHhhccccC
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLG------NRWALIAKRVPGRTDNQVKNYWNSHLSKKLG 60 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G------~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~ 60 (159)
+|.+.+++||+|||++|+++|.+|| .+|..||.+|||||+.||++||+.+|.+.++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999 6899999999999999999999999998773
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.73 E-value=4.3e-18 Score=112.69 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCC--CCCHHHHHHHHHHhhcccc
Q 031483 7 NVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVP--GRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 7 ~lkk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~knRw~~~l~~~~ 59 (159)
..++++||+|||++|+++|.+|| ++|+.||+.+| |||+.|||+||++++++.+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 35789999999999999999999 58999999866 9999999999999998876
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.72 E-value=4.7e-18 Score=122.24 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCCCCCCChhhh
Q 031483 10 RGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKIQPITDQNA 88 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~t~~e~ 88 (159)
+++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+ +.++||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i-------------------~~~~WT~eEd 61 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPAL-------------------RTDPWSPEED 61 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCC-------------------TTCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccc-------------------cccccCHHHH
Confidence 689999999999999999996 79999999999999999999999999887 5789999999
Q ss_pred cccCCCC
Q 031483 89 NAIIDPC 95 (159)
Q Consensus 89 ~~l~~~~ 95 (159)
..|+...
T Consensus 62 ~~L~~~~ 68 (107)
T 2k9n_A 62 MLLDQKY 68 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
No 24
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-19 Score=125.09 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=53.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 3 YLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 3 yL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
.++|.+++++||+|||++|+++|.+||++|+.||.+|||||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 57899999999999999999999999999999999999999999999999998874
No 25
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.72 E-value=8.8e-18 Score=108.93 Aligned_cols=52 Identities=25% Similarity=0.364 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC-CCchhhhhcCC-CCCHHHHHHHHHHhh
Q 031483 4 LSPNVNRGNFTEEEDDLIIRLHKLLG-NRWALIAKRVP-GRTDNQVKNYWNSHL 55 (159)
Q Consensus 4 L~P~lkk~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRT~~q~knRw~~~l 55 (159)
+++.+.+++||+|||++|+++|.+|| ++|..||++|| |||+.||++||.+++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45677899999999999999999999 89999999999 999999999999765
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.71 E-value=1.1e-17 Score=124.34 Aligned_cols=68 Identities=31% Similarity=0.501 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhccccCCCccCCCCCCCCCccccCCCCCCChhhh
Q 031483 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKIQPITDQNA 88 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~t~~e~ 88 (159)
+|+||+|||++|+++|..|| .+|..||..|||||+.||+.||.++|.+.+ +.++||.+|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~-------------------~~~~Wt~eEd 62 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAV-------------------VKHAWTPEED 62 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTC-------------------CCSCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccc-------------------cCCCCCHHHH
Confidence 79999999999999999999 679999999999999999999999999988 6779999999
Q ss_pred cccCCCCC
Q 031483 89 NAIIDPCD 96 (159)
Q Consensus 89 ~~l~~~~~ 96 (159)
..|+....
T Consensus 63 ~~L~~~~~ 70 (131)
T 3zqc_A 63 ETIFRNYL 70 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766443
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.62 E-value=3.5e-16 Score=106.09 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=48.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLG----NRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
.|.+.+++||.+||.+|++++..|| .+|.+||.+|||||+.||++||+.++..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 3577889999999999999999999 6899999999999999999999988654
No 28
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.59 E-value=6.1e-16 Score=125.38 Aligned_cols=55 Identities=33% Similarity=0.579 Sum_probs=49.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------chhhhhcCCCCCHHHHHHHHHHhhccccC
Q 031483 6 PNVNRGNFTEEEDDLIIRLHKLLGNR------WALIAKRVPGRTDNQVKNYWNSHLSKKLG 60 (159)
Q Consensus 6 P~lkk~~WT~eED~~L~~lv~~~G~~------W~~Ia~~lpgRT~~q~knRw~~~l~~~~~ 60 (159)
+.+++++||+|||++|+++|+++|++ |..||++|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 57889999999999999999999975 99999999999999999999999999985
No 29
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.59 E-value=1.2e-15 Score=112.46 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-Cchhhhhc----CCCCCHHHHHHHHHHhhcc
Q 031483 4 LSPNVNRGNFTEEEDDLIIRLHKLLGN-RWALIAKR----VPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 4 L~P~lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~knRw~~~l~~ 57 (159)
+.+..++++||+|||+.|+++|.+||. +|+.|+.. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 567889999999999999999999997 99999997 5999999999999999984
No 30
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=104.92 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHh
Q 031483 7 NVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSH 54 (159)
Q Consensus 7 ~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~ 54 (159)
...+++||+|||.+|++++.+||.+|..||.+|+|||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999876
No 31
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.2e-14 Score=95.30 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchhhh---hcCCCCCHHHHHHHHHHhhccc
Q 031483 8 VNRGNFTEEEDDLIIRLHKLLGNRWALIA---KRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 8 lkk~~WT~eED~~L~~lv~~~G~~W~~Ia---~~lpgRT~~q~knRw~~~l~~~ 58 (159)
-++.+||+|||+.|+++|++||.+|+.|+ .+|+|||+.++|+||++++++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36889999999999999999999999999 5789999999999999988764
No 32
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.52 E-value=1e-14 Score=101.12 Aligned_cols=49 Identities=22% Similarity=0.414 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Cchhhhhc----CCCCCHHHHHHHHHHhhcccc
Q 031483 11 GNFTEEEDDLIIRLHKLLGN-RWALIAKR----VPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 11 ~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~knRw~~~l~~~~ 59 (159)
++||+|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999995 899999999999999997543
No 33
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.51 E-value=2.4e-14 Score=103.25 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CchhhhhcC----CCCCHHHHHHHHHHhhcccc
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLGN-RWALIAKRV----PGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~l----pgRT~~q~knRw~~~l~~~~ 59 (159)
.+..++++||+|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||+++++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999997 999999965 89999999999999997654
No 34
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.50 E-value=3.4e-14 Score=104.87 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=48.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-Cchhhhhc----CCCCCHHHHHHHHHHhhccc
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLGN-RWALIAKR----VPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~knRw~~~l~~~ 58 (159)
.+..++++||+|||+.|+++|++||. +|+.|+.. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 99999986 49999999999999999643
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.44 E-value=7.7e-14 Score=98.55 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLG----NRWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
.+++||.|||.+|.+++..|| .+|.+||.+|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987653
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.2e-12 Score=82.34 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
..++||+||++++++++..||++|..||.+|||||..+|.++|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.11 E-value=7.1e-11 Score=79.62 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 6 PNVNRGNFTEEEDDLIIRLHKLLG----NRWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 6 P~lkk~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
...+++.||.|||.+|.+++..|+ .+|.+||.++ |||..+|++||+.+....
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 456788999999999999999997 5799999998 999999999999887663
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=81.83 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=48.9
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcC-----CCCCHHHHHHHHHHhhcccc
Q 031483 2 NYLSPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRV-----PGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 2 NyL~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~l-----pgRT~~q~knRw~~~l~~~~ 59 (159)
+||.| .+||.||+..|++||++||.+|..|+.++ ++||..++|+||....++.+
T Consensus 26 ~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 26 LYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp HHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35655 89999999999999999999999999999 58999999999998887765
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.04 E-value=1.7e-10 Score=92.82 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
...+||+||+.++++++++||++|..||+.+++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999977765
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=3e-09 Score=71.79 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----CchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLGN----RWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G~----~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
....||.+|+.+|..+...|+. +|..||..+||||..+|+.||..+++..-
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 3568999999999999999983 69999999999999999999998866554
No 41
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.79 E-value=6.9e-09 Score=67.24 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-chhhhh-cCCCCCHHHHHHHHHHhhc
Q 031483 10 RGNFTEEEDDLIIRLHKLL--------GNR-WALIAK-RVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~--------G~~-W~~Ia~-~lpgRT~~q~knRw~~~l~ 56 (159)
|.+||+|||.+|++.|.++ |++ |..+|. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 554 999999 8999999999999998775
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.55 E-value=6.6e-08 Score=67.52 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 11 GNFTEEEDDLIIRLHKLLGN---RWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 11 ~~WT~eED~~L~~lv~~~G~---~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
--||.|||..||..+++-|. .|+.||+.|.+|+.+||++|++.+++-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 36999999999999999996 799999999999999999999988754
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.1e-07 Score=60.74 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=46.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhh-cCCCCCHHHHHHHHHHh
Q 031483 5 SPNVNRGNFTEEEDDLIIRLHKLLGNRWALIAK-RVPGRTDNQVKNYWNSH 54 (159)
Q Consensus 5 ~P~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~-~lpgRT~~q~knRw~~~ 54 (159)
.|.+....||+||-.+..+.+.+||..|..|++ .+|+||..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 588999999999999999999999999999999 59999999999988643
No 44
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.91 E-value=1.3e-08 Score=67.58 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---CchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 12 NFTEEEDDLIIRLHKLLGN---RWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 12 ~WT~eED~~L~~lv~~~G~---~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
-||.|||..|+..+.+-|. .|+.||..+ +|+.+||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 799999999 9999999999998875
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.38 E-value=9e-08 Score=64.46 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CchhhhhcCCCCCHHHHHHHHH
Q 031483 10 RGNFTEEEDDLIIRLHKLLGN----RWALIAKRVPGRTDNQVKNYWN 52 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~----~W~~Ia~~lpgRT~~q~knRw~ 52 (159)
.+.||.+|+.++..+...|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999985
No 46
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.12 E-value=3.4e-06 Score=59.18 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhhhhcCC-----CCCHHHHHHHHHHhhcccc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLGNRWALIAKRVP-----GRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lp-----gRT~~q~knRw~~~l~~~~ 59 (159)
+...||.||-..|++|+++|+-+|..|+.++. +||..++|.||....++-+
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999874 7999999999998887765
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.12 E-value=3.7e-06 Score=58.97 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHH
Q 031483 10 RGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNS 53 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~ 53 (159)
...||+||-++..+....||++|..||..+|+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 36799999999999999999999999999999999999998864
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.11 E-value=2.6e-06 Score=75.10 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
...+||.+|-.++++++.+||..|..||..++.||..|||++|..+-+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999985433
No 49
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.07 E-value=9.6e-06 Score=53.88 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhh-cCCCCCHHHHHHHHHH
Q 031483 10 RGNFTEEEDDLIIRLHKLLGNRWALIAK-RVPGRTDNQVKNYWNS 53 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~~W~~Ia~-~lpgRT~~q~knRw~~ 53 (159)
...||++|-.+..+.+..||..|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999999873
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.86 E-value=9.6e-06 Score=65.74 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=26.2
Q ss_pred CchhhhhcCCCCCHHHHHHHHHHhhccc
Q 031483 31 RWALIAKRVPGRTDNQVKNYWNSHLSKK 58 (159)
Q Consensus 31 ~W~~Ia~~lpgRT~~q~knRw~~~l~~~ 58 (159)
.|..||+.+|+||.+++|+||..+|+..
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999888765
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.54 E-value=6.7e-05 Score=51.12 Aligned_cols=56 Identities=14% Similarity=0.364 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CCchhhhhcCC----CCCHHHHHHHHHHhhccccCCCcc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLG----------NRWALIAKRVP----GRTDNQVKNYWNSHLSKKLGIKDQ 64 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G----------~~W~~Ia~~lp----gRT~~q~knRw~~~l~~~~~~~~~ 64 (159)
+...||.+|-.+||++...+. ..|..||..|. .||+.||+.+|.++.+.-...+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999998632 14999999874 799999999999988875544443
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.44 E-value=0.0085 Score=39.06 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC---chhhhhcC--CCCCHHHHHHHHHHh
Q 031483 6 PNVNRGNFTEEEDDLIIRLHKLLGNR---WALIAKRV--PGRTDNQVKNYWNSH 54 (159)
Q Consensus 6 P~lkk~~WT~eED~~L~~lv~~~G~~---W~~Ia~~l--pgRT~~q~knRw~~~ 54 (159)
+...+-.||+|..+..++++.++|.. +..|...| +|.|-.+|+.|.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34567799999999999999999954 78888765 699999999997754
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.14 E-value=0.0058 Score=51.01 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----Cchhhhh------------cCCCCCHHHHHHHHHHhhcc
Q 031483 6 PNVNRGNFTEEEDDLIIRLHKLLGN----RWALIAK------------RVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 6 P~lkk~~WT~eED~~L~~lv~~~G~----~W~~Ia~------------~lpgRT~~q~knRw~~~l~~ 57 (159)
|.-+...||.+||..|+-++.+||- .|..|.. +|..||+.+|..|...+++-
T Consensus 208 ~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 208 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 3446678999999999999999994 5999962 44689999999999988864
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.14 E-value=0.00085 Score=49.04 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHhCCCchh
Q 031483 4 LSPNVNRG-NFTEEEDDLIIRLHKLLGNRWAL 34 (159)
Q Consensus 4 L~P~lkk~-~WT~eED~~L~~lv~~~G~~W~~ 34 (159)
+.|.++++ +|+++|+.+|+.++..+|++|++
T Consensus 72 ~~p~~krg~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 72 IAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp TCSTTCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence 45999999 99999999999999999999977
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.11 E-value=0.03 Score=47.88 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCchhhhhc------------CCCCCHHHHHHHHHHhhcc
Q 031483 9 NRGNFTEEEDDLIIRLHKLLG----NRWALIAKR------------VPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G----~~W~~Ia~~------------lpgRT~~q~knRw~~~l~~ 57 (159)
++..||.+||..||-++.+|| +.|..|-.. |..||...|..|...+++-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 566899999999999999999 469988432 3589999999999988865
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.04 E-value=0.033 Score=46.42 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 10 RGNFTEEEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
-+.||..+....+.++.+||. .|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 357999999999999999995 699999999999999998876655544
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.39 E-value=0.0071 Score=53.33 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHH
Q 031483 10 RGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNS 53 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~ 53 (159)
...||++|..+..+.+..||+.|..|+++||+|+-.+|-.+|+.
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp --------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc
Confidence 34799999999999999999999999999999999999877653
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.73 E-value=0.066 Score=41.35 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCchhhhh--cC------------CCCCHHHHHHHHHHhhc
Q 031483 10 RGNFTEEEDDLIIRLHKLLG-NRWALIAK--RV------------PGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G-~~W~~Ia~--~l------------pgRT~~q~knRw~~~l~ 56 (159)
...||.+||..|+.++.+|| ++|..|.. .+ ..++...+..|...+|+
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 44699999999999999999 89998865 22 12445667777664443
No 59
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.28 E-value=0.14 Score=39.49 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=40.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCchhhhh--cCCCCCHHHHHHHHHHhhc
Q 031483 6 PNVNRGNFTEEEDDLIIRLHKLLG---NRWALIAK--RVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 6 P~lkk~~WT~eED~~L~~lv~~~G---~~W~~Ia~--~lpgRT~~q~knRw~~~l~ 56 (159)
|.-....||..|=..+++++.+|| .+|..|+. .|.++|...++..+...+.
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 444567899999999999999999 57999986 5889999999987665543
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.11 E-value=0.094 Score=42.94 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhh
Q 031483 11 GNFTEEEDDLIIRLHKLLG-NRWALIAK 37 (159)
Q Consensus 11 ~~WT~eED~~L~~lv~~~G-~~W~~Ia~ 37 (159)
..|+.+||..|+..|.+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 78999965
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.75 E-value=2.9 Score=34.01 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCchhhhh--cCCCCCHHHHHHHHHHhhc
Q 031483 10 RGNFTEEEDDLIIRLHKLLG---NRWALIAK--RVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G---~~W~~Ia~--~lpgRT~~q~knRw~~~l~ 56 (159)
+++||..|=..|++.+.+|| .+|..|+. .|+.++...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 67899999999999999999 58999976 6889999888877775543
No 62
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=81.58 E-value=1 Score=31.88 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=30.1
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
.|..+|...| +.|..||..|.--.+..+|..|..+|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4677778887 4799999987544488999999988866
No 63
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=78.81 E-value=2.2 Score=30.13 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCCC--C--HHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPGR--T--DNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpgR--T--~~q~knRw~~~l~~ 57 (159)
.|..+|...| +.|..||..|.-- + +..+|.+|..+|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677788888 4799999987422 1 56889999988866
No 64
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=78.33 E-value=2.5 Score=29.15 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=28.4
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCCCC----HHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPGRT----DNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpgRT----~~q~knRw~~~l~~ 57 (159)
.|..+|.+.| +.|..||..|.--. +.++|..|..+|.+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4667777787 47999999884322 46889999988765
No 65
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=77.47 E-value=0.57 Score=30.87 Aligned_cols=30 Identities=3% Similarity=-0.105 Sum_probs=16.4
Q ss_pred HHHHHHHhhccccCCCccCCCCCCCCCccccCCCCCCChhhhcccCCCC
Q 031483 47 VKNYWNSHLSKKLGIKDQTRGVGDSPSLTQSQKIQPITDQNANAIIDPC 95 (159)
Q Consensus 47 ~knRw~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~t~~e~~~l~~~~ 95 (159)
+--||.++|++.+ ++++||++||..|+...
T Consensus 9 ~~~~~~~~ldP~i-------------------~k~~wT~EED~~L~~l~ 38 (73)
T 2llk_A 9 SGRENLYFQGDRN-------------------HVGKYTPEEIEKLKELR 38 (73)
T ss_dssp ----------CCC-------------------CCCSSCHHHHHHHHHHH
T ss_pred cCcceeeecCCCC-------------------CCCCCCHHHHHHHHHHH
Confidence 4457888898888 78899999999876543
No 66
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=75.92 E-value=2.9 Score=29.79 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCCCC----HHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPGRT----DNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpgRT----~~q~knRw~~~l~~ 57 (159)
.|..+|...| +.|..||..|.--+ +.++|..|..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677777887 47999999884322 46889999988876
No 67
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=75.43 E-value=3.1 Score=29.64 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=28.4
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCCC--C--HHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPGR--T--DNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpgR--T--~~q~knRw~~~l~~ 57 (159)
.|..+|.+.| +.|..||..|.-. + +..+|.+|..+|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4667777887 4799999988422 2 46889999988876
No 68
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.57 E-value=3.5 Score=25.07 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 16 EEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 16 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
+.+..++.++...|-.+..||..+ |-+...|+.+.+..++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455566667667889999999999 7788888887664443
No 69
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=70.24 E-value=2 Score=29.05 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCC---C-CHHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPG---R-TDNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpg---R-T~~q~knRw~~~l~~ 57 (159)
.|..+|.+.| +.|..||..|.- - .+.++|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4666677776 579999998732 1 256889988877654
No 70
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=69.87 E-value=1.5 Score=31.42 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHHHHHHHhC--------CCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
.|..+|.+.| +.|..||..|.--.+..+|..|..+|.+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 4566667777 2599999987544489999999988877
No 71
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=69.30 E-value=5.5 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHhC--------CCchhhhhcCC--CC---CHHHHHHHHHHhhccc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVP--GR---TDNQVKNYWNSHLSKK 58 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lp--gR---T~~q~knRw~~~l~~~ 58 (159)
.|..+|.+.| +.|..||..|. .. .+..+|..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4667777887 47999999873 32 2568999999888763
No 72
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=68.50 E-value=3.2 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHHhC--------CCchhhhhcCC--CC---CHHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVP--GR---TDNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lp--gR---T~~q~knRw~~~l~~ 57 (159)
.|..+|.+.| +.|..||..|. .. .+.++|..|..+|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677777787 57999999873 21 246899999988876
No 73
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=68.03 E-value=5.9 Score=28.23 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHHHHHhC--------CCchhhhhcCC--CC---CHHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRVP--GR---TDNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~lp--gR---T~~q~knRw~~~l~~ 57 (159)
.|..+|...| +.|..||..|. .. .+..+|..|..+|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777887 47999999873 22 257899999988876
No 74
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.72 E-value=4.7 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH----hCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 16 EEDDLIIRLHKL----LGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 16 eED~~L~~lv~~----~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
+.+..++.++.- .|-.+..||..+ |-+...|+.+....++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALR 56 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 444555555554 577899999998 8888888887665443
No 75
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=65.16 E-value=15 Score=31.16 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhhcCC-CCCHHHHHHHHHHhhcc
Q 031483 11 GNFTEEEDDLIIRLHKLLGN-RWALIAKRVP-GRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 11 ~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lp-gRT~~q~knRw~~~l~~ 57 (159)
+.||.-+=..++.++.+||. .-..||..|. |.|...|+........+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 57999999999999999995 5999999997 99999999665555444
No 76
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.03 E-value=4.9 Score=24.74 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH----HhCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 16 EEDDLIIRLHK----LLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 16 eED~~L~~lv~----~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
+.+..++.+.. ..|-.+..||..+ |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555544 3477899999999 88999999987765544
No 77
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=63.92 E-value=7.6 Score=27.72 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=27.6
Q ss_pred HHHHHHHHhC--------CCchhhhhcC--CCC---CHHHHHHHHHHhhcc
Q 031483 20 LIIRLHKLLG--------NRWALIAKRV--PGR---TDNQVKNYWNSHLSK 57 (159)
Q Consensus 20 ~L~~lv~~~G--------~~W~~Ia~~l--pgR---T~~q~knRw~~~l~~ 57 (159)
.|..+|.+.| +.|..||..| |.. ....+|.+|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4566667777 4799999987 322 246889999988766
No 78
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.74 E-value=8 Score=25.21 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 16 EEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 16 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
+.+..++.++...|-.-..||..+ |-+...|+.|.+..++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344555666666688899999999 8889999888765443
No 79
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=55.85 E-value=26 Score=24.03 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHH
Q 031483 9 NRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKN 49 (159)
Q Consensus 9 kk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~kn 49 (159)
.+..=+..-+..|..++...|..|..+|..+ |=+..+|..
T Consensus 9 ~~~~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 9 GSLSGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp TCCSCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred ccCchHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3444477778889999999999999999998 666665544
No 80
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=53.52 E-value=12 Score=26.77 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 19 DLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 19 ~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
..++.++...|-....||..+ |-+...|+++.+..++
T Consensus 141 r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 141 RALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALD 177 (184)
T ss_dssp HHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344445555678899999999 8888999998775543
No 81
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.09 E-value=18 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 19 DLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 19 ~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
..++.++...|-....||..+ |-+...|++|.+..++
T Consensus 146 r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 146 RMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRARE 182 (194)
T ss_dssp HHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 334444445577899999999 7888999888765443
No 82
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=47.10 E-value=26 Score=22.98 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 7 NVNRGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 7 ~lkk~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
.-.....|+.|-+.|.-++ .|..-..||..| |-+...|+.+....+++
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp -----CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3344567888777665544 889999999999 88999999988765543
No 83
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.21 E-value=17 Score=23.38 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH----hCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 16 EEDDLIIRLHKL----LGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 16 eED~~L~~lv~~----~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
+.+..++.+..- .|-.+..||..+ |-+...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555555554 467899999999 88888888876655433
No 84
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=44.51 E-value=19 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCchhhhhcCCCCCHHHHHH
Q 031483 18 DDLIIRLHKLLGNRWALIAKRVPGRTDNQVKN 49 (159)
Q Consensus 18 D~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~kn 49 (159)
|..|..+++..|..|..+|..+ |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778899999999999998 666665544
No 85
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.66 E-value=27 Score=21.42 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 13 FTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 13 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
.|+.|-+ ++.++ ..|-.-..||..+ |-+...|+.+....++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444444 44454 6688899999999 7789999887765443
No 86
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=42.07 E-value=25 Score=24.61 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCchhhhhcCCCCCHHHHHH
Q 031483 20 LIIRLHKLLGNRWALIAKRVPGRTDNQVKN 49 (159)
Q Consensus 20 ~L~~lv~~~G~~W~~Ia~~lpgRT~~q~kn 49 (159)
.|..++...|..|..+|+.+ |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667888999999999998 556655433
No 87
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=41.50 E-value=23 Score=24.73 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCchhhhhcCCCCCHHHHHH
Q 031483 20 LIIRLHKLLGNRWALIAKRVPGRTDNQVKN 49 (159)
Q Consensus 20 ~L~~lv~~~G~~W~~Ia~~lpgRT~~q~kn 49 (159)
.|..++...|..|..+|+.+ |=++.+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999998 666655543
No 88
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.13 E-value=28 Score=23.81 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhh
Q 031483 17 EDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHL 55 (159)
Q Consensus 17 ED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l 55 (159)
.+..++.++...|-....||..+ |-+...|+.|.+..+
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTG 66 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44555556666788999999999 888888888766443
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.84 E-value=27 Score=22.88 Aligned_cols=43 Identities=33% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 12 NFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 12 ~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
..|+.|-+.|. ++ ..|-.-..||..+ |-+...|+.|....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666655554 44 7788899999999 78999999887655443
No 90
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=39.74 E-value=34 Score=23.37 Aligned_cols=31 Identities=19% Similarity=0.496 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCchhhhhcCCCCCHHHHHH
Q 031483 18 DDLIIRLHKLLGNRWALIAKRVPGRTDNQVKN 49 (159)
Q Consensus 18 D~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~kn 49 (159)
+..|-.++...|..|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556677788899999999999 666655543
No 91
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.12 E-value=31 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhh
Q 031483 19 DLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHL 55 (159)
Q Consensus 19 ~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l 55 (159)
..++.++...|-....||..+ |-+...|+.+.+..+
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKAL 228 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 334444444577899999999 888888888776443
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.61 E-value=27 Score=23.95 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=23.2
Q ss_pred HHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 26 KLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 26 ~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
...|-....||..+ |-+...|+.+.+..++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 44577899999999 7889899888765443
No 93
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.42 E-value=30 Score=24.84 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCC-CchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 16 EEDDLIIRLHKLLGN-RWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 16 eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
+-|..|+.+..+-|. .|..||+.+ |-+...|+.|++.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 457778877777774 699999999 8899999999998887765
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.88 E-value=38 Score=21.50 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 12 NFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 12 ~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
..|+.|-+.|. ++ ..|-.-..||..+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665554 44 6788899999999 78999999887654433
No 95
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.61 E-value=55 Score=18.91 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 18 DDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 18 D~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
+..++.+ -..|-.-..||..+ |-+...|+.+....++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3445555 46688899999999 7899999988775544
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.43 E-value=57 Score=19.45 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 11 GNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 11 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
...|+.|-+.|.. + ..|..-..||..+ |-+...|+.+.....+
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 4577777766654 4 6678899999999 7788899888765443
No 97
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.00 E-value=80 Score=20.48 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHH
Q 031483 16 EEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNY 50 (159)
Q Consensus 16 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knR 50 (159)
-|...|.++...+|++.++.|+.+ |=+...+..+
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788888899999999999988 5555555444
No 98
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=32.96 E-value=61 Score=19.51 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHH
Q 031483 16 EEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNY 50 (159)
Q Consensus 16 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knR 50 (159)
-|.+.|.++...+|++.++.|+.+ |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477888899999999999999988 4444444443
No 99
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.90 E-value=58 Score=17.26 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHH
Q 031483 12 NFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYW 51 (159)
Q Consensus 12 ~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw 51 (159)
..++++-..++.++ .-|-....||+.+ |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677766777665 4577899999988 67777776644
No 100
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.83 E-value=36 Score=21.90 Aligned_cols=42 Identities=31% Similarity=0.232 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhcc
Q 031483 13 FTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLSK 57 (159)
Q Consensus 13 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~~ 57 (159)
.|+.|-+.|. ++ ..|-.-..||..+ |-+...|+.|....+++
T Consensus 30 Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 5666655554 44 6788999999999 88999999987655433
No 101
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=31.00 E-value=48 Score=22.69 Aligned_cols=41 Identities=20% Similarity=0.087 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhh
Q 031483 13 FTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHL 55 (159)
Q Consensus 13 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l 55 (159)
+++ .+..++.++...|-.-..||..+ |-+...|+.+.+...
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 344 34555666667899999999999 888888888776544
No 102
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=28.51 E-value=35 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.6
Q ss_pred CCCCCCCCCHHHHHHHH
Q 031483 6 PNVNRGNFTEEEDDLII 22 (159)
Q Consensus 6 P~lkk~~WT~eED~~L~ 22 (159)
|.-..|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56678999999999876
No 103
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=25.77 E-value=93 Score=21.55 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 16 EEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 16 eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
+-|..|+.+....| -.+..||+.+ |-+...|+.|.+.+....+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34556666666666 4699999999 7799999999998876654
No 104
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.05 E-value=82 Score=22.86 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 16 EEDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 16 eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45666777767766 4699999998 7899999999998877665
No 105
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.36 E-value=1.1e+02 Score=20.22 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhhc
Q 031483 10 RGNFTEEEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHLS 56 (159)
Q Consensus 10 k~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l~ 56 (159)
....|+.|-+.|.- + ..|-.-..||..| |-+...|+.+....++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34578877776654 3 3788899999999 7799999987765443
No 106
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=23.00 E-value=39 Score=22.35 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHH
Q 031483 16 EEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKN 49 (159)
Q Consensus 16 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~kn 49 (159)
.-+..+-.++...|..|..+|.++ |=++.+|..
T Consensus 12 ~l~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 12 YLQVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 334456667777899999999998 666666544
No 107
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=22.46 E-value=18 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred HhCCCchhhhhcCCCCCHHHHHHHHHHh
Q 031483 27 LLGNRWALIAKRVPGRTDNQVKNYWNSH 54 (159)
Q Consensus 27 ~~G~~W~~Ia~~lpgRT~~q~knRw~~~ 54 (159)
..|-....||..+ |-+...|+.+.+..
T Consensus 212 ~~g~s~~EIA~~l-gis~~tV~~~~~ra 238 (243)
T 1l0o_C 212 YKDQTQSEVASRL-GISQVQMSRLEKKI 238 (243)
T ss_dssp ----------------------------
T ss_pred hcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3456677888877 66666777665543
No 108
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.03 E-value=1e+02 Score=21.40 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhC-CCchhhhhcCCCCCHHHHHHHHHHhhcccc
Q 031483 17 EDDLIIRLHKLLG-NRWALIAKRVPGRTDNQVKNYWNSHLSKKL 59 (159)
Q Consensus 17 ED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~~l~~~~ 59 (159)
-|..|+.+....| -.++.||..+ |-+...|..|...+....+
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3556666666666 4799999999 7899999999998877665
No 109
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.30 E-value=50 Score=23.18 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCchhhhhcCCCCCHHHHHHHHHHhh
Q 031483 16 EEDDLIIRLHKLLGNRWALIAKRVPGRTDNQVKNYWNSHL 55 (159)
Q Consensus 16 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~~l 55 (159)
+++..++.+....|-.-..||..+ |-+...|+.|....+
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar 134 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEAL 134 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 345556666666688899999999 889999999876443
Done!