BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031484
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S2U|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
Murg:udp-Glcnac Substrate Complex
Length = 365
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%)
Query: 41 LTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKL 100
+ PF+ M AYA ADL++ RAGA+T E+ A G P+ L+P P+ + HQ +NA + +
Sbjct: 239 VAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRS 298
Query: 101 ADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVES 159
R++ + + L + E+L + + M+++A AKP A+ + L +
Sbjct: 299 GAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357
>pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1F0K|B Chain B, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1NLM|A Chain A, Crystal Structure Of Murg:glcnac Complex
pdb|1NLM|B Chain B, Crystal Structure Of Murg:glcnac Complex
Length = 364
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 35 NHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNA 94
P+ +T F+ M AYA AD++V R+GA+T EI A G P++ +P + + Q+ NA
Sbjct: 235 GQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQH-KDRQQYWNA 293
Query: 95 SLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHI 153
+ K ++II + +L + T+ E L+ M+ERA A+ P A+ +A +
Sbjct: 294 LPLEKAGAAKIIEQPQLSVDAVANTLAG-WSRETLLT-MAERARAASIPDATERVANEV 350
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 55 ADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSI 114
ADL V+ AGA E LAT P I +P QF NA ++ L +R + +E +
Sbjct: 300 ADLFVTHAGAGGSQEGLATATPMIAVPQ----AVDQFGNADMLQGLGVARKLATEEATAD 355
Query: 115 TLETT 119
L T
Sbjct: 356 LLRET 360
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 38 RLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLM 97
R+ TP +D+ DL+V AG ++ L+ G P +LIP +V E + A
Sbjct: 267 RVGWTP----LDVVAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYG 322
Query: 98 AKLA 101
A +A
Sbjct: 323 AAIA 326
>pdb|1L8L|A Chain A, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8L|B Chain B, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|A Chain A, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|B Chain B, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
Length = 225
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 91 FKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASA 147
F +A + DS +I E+ +D + +I G E ++EM+ RA+ A P +A
Sbjct: 11 FYSADAVCFDVDSTVIREEGIDELA------KICGVEDAVSEMTRRAMGGAVPFKAA 61
>pdb|1NNL|A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase
pdb|1NNL|B Chain B, Crystal Structure Of Human Phosphoserine Phosphatase
Length = 225
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 91 FKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASA 147
F +A + DS +I E+ +D + +I G E ++EM+ RA+ A P +A
Sbjct: 11 FYSADAVCFDVDSTVIREEGIDELA------KICGVEDAVSEMTRRAMGGAVPFKAA 61
>pdb|1UF2|K Chain K, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 506
Score = 26.6 bits (57), Expect = 6.5, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 30 ESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEG- 88
+S++ + L TPF+ A I+S G Y ++ G PS + +PNV+
Sbjct: 97 QSIMPSLSALFNTPFIQG-----AFRHRIISSMGPEISYLVMVIGPPSGFMDTPNVSSAQ 151
Query: 89 ---HQFKNASL 96
H NA +
Sbjct: 152 SSVHTVSNADV 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,999,094
Number of Sequences: 62578
Number of extensions: 134960
Number of successful extensions: 382
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 21
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)