Query 031484
Match_columns 159
No_of_seqs 115 out of 1534
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 14:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0707 MurG UDP-N-acetylgluco 99.9 3.9E-24 8.4E-29 165.5 19.1 154 5-158 202-356 (357)
2 PRK00726 murG undecaprenyldiph 99.9 1.6E-20 3.5E-25 145.6 19.1 142 16-158 214-356 (357)
3 PF04101 Glyco_tran_28_C: Glyc 99.9 5.5E-23 1.2E-27 144.1 4.5 125 13-137 30-155 (167)
4 PRK13608 diacylglycerol glucos 99.9 9.9E-21 2.2E-25 148.9 17.7 145 6-158 223-370 (391)
5 PRK12446 undecaprenyldiphospho 99.9 8.4E-20 1.8E-24 141.9 18.4 146 4-155 203-351 (352)
6 cd03785 GT1_MurG MurG is an N- 99.8 1.3E-19 2.9E-24 139.8 18.0 139 13-151 210-349 (350)
7 PLN02605 monogalactosyldiacylg 99.8 1E-19 2.2E-24 142.8 17.2 139 12-158 239-380 (382)
8 PRK13609 diacylglycerol glucos 99.8 5.4E-19 1.2E-23 138.3 18.3 141 10-158 226-370 (380)
9 TIGR01133 murG undecaprenyldip 99.8 1.6E-18 3.4E-23 133.7 17.8 140 13-153 208-348 (348)
10 TIGR01426 MGT glycosyltransfer 99.8 4E-17 8.6E-22 128.4 16.4 138 13-158 253-391 (392)
11 TIGR03492 conserved hypothetic 99.8 8.5E-17 1.8E-21 126.8 17.9 147 2-157 227-396 (396)
12 COG1819 Glycosyl transferases, 99.8 3.5E-17 7.5E-22 129.3 15.5 146 4-158 253-400 (406)
13 cd03784 GT1_Gtf_like This fami 99.7 5E-17 1.1E-21 127.9 13.9 132 14-155 269-400 (401)
14 PRK15427 colanic acid biosynth 99.7 1.4E-16 3.1E-21 126.0 15.6 148 1-158 240-404 (406)
15 PRK00025 lpxB lipid-A-disaccha 99.7 5.3E-17 1.1E-21 126.9 12.5 153 2-158 208-376 (380)
16 PHA03392 egt ecdysteroid UDP-g 99.7 2.9E-16 6.3E-21 127.1 15.4 134 15-158 329-466 (507)
17 PLN02871 UDP-sulfoquinovose:DA 99.7 8.7E-16 1.9E-20 123.4 15.3 142 3-155 279-429 (465)
18 TIGR00215 lpxB lipid-A-disacch 99.7 1.7E-16 3.6E-21 124.8 10.5 151 2-155 213-384 (385)
19 TIGR03088 stp2 sugar transfera 99.7 1.4E-15 3.1E-20 118.4 15.0 148 1-158 212-371 (374)
20 cd05844 GT1_like_7 Glycosyltra 99.7 9.6E-16 2.1E-20 118.5 14.0 145 1-155 206-366 (367)
21 cd03820 GT1_amsD_like This fam 99.7 1.5E-15 3.1E-20 114.9 14.3 143 2-154 197-347 (348)
22 PF00201 UDPGT: UDP-glucoronos 99.7 1.5E-15 3.2E-20 122.9 13.5 141 3-155 296-440 (500)
23 cd03814 GT1_like_2 This family 99.7 3.4E-15 7.5E-20 114.2 14.8 142 2-157 216-363 (364)
24 cd04962 GT1_like_5 This family 99.7 4.7E-15 1E-19 114.8 15.3 146 2-158 216-369 (371)
25 cd03818 GT1_ExpC_like This fam 99.7 3E-15 6.4E-20 117.8 14.0 144 1-154 230-395 (396)
26 PF13528 Glyco_trans_1_3: Glyc 99.7 2E-15 4.4E-20 115.3 12.6 109 6-123 208-317 (318)
27 TIGR03449 mycothiol_MshA UDP-N 99.7 4.9E-15 1.1E-19 116.6 14.9 148 1-158 237-400 (405)
28 PRK15484 lipopolysaccharide 1, 99.6 7.9E-15 1.7E-19 115.1 15.3 147 1-158 211-376 (380)
29 cd03808 GT1_cap1E_like This fa 99.6 8.2E-15 1.8E-19 111.2 14.3 143 2-154 207-358 (359)
30 PRK05749 3-deoxy-D-manno-octul 99.6 1.3E-14 2.9E-19 115.2 15.5 150 1-158 249-422 (425)
31 PRK15490 Vi polysaccharide bio 99.6 1.3E-14 2.7E-19 117.3 15.3 149 1-159 416-575 (578)
32 PRK15179 Vi polysaccharide bio 99.6 1.1E-14 2.4E-19 121.3 15.3 150 1-158 535-692 (694)
33 TIGR02918 accessory Sec system 99.6 1.5E-14 3.4E-19 117.0 15.5 149 1-158 337-498 (500)
34 cd04951 GT1_WbdM_like This fam 99.6 1.6E-14 3.4E-19 111.0 14.6 145 2-158 207-359 (360)
35 cd04949 GT1_gtfA_like This fam 99.6 6.1E-15 1.3E-19 114.7 11.6 143 1-152 222-371 (372)
36 cd03801 GT1_YqgM_like This fam 99.6 2.7E-14 5.9E-19 108.3 14.8 146 2-157 218-373 (374)
37 cd03800 GT1_Sucrose_synthase T 99.6 2.1E-14 4.6E-19 112.0 14.3 144 1-154 238-397 (398)
38 cd03807 GT1_WbnK_like This fam 99.6 4E-14 8.8E-19 107.8 14.7 145 1-157 211-364 (365)
39 TIGR03087 stp1 sugar transfera 99.6 2.8E-14 6.1E-19 112.4 14.0 140 5-158 250-395 (397)
40 TIGR00236 wecB UDP-N-acetylglu 99.6 4.4E-14 9.6E-19 110.1 14.9 143 2-156 218-364 (365)
41 cd03792 GT1_Trehalose_phosphor 99.6 5.2E-14 1.1E-18 109.8 14.9 146 1-158 208-370 (372)
42 COG4671 Predicted glycosyl tra 99.6 2.1E-14 4.6E-19 108.9 12.1 148 2-157 236-389 (400)
43 PRK10307 putative glycosyl tra 99.6 7E-14 1.5E-18 110.5 15.3 145 2-157 248-405 (412)
44 cd03823 GT1_ExpE7_like This fa 99.6 9.4E-14 2E-18 106.0 15.5 142 2-158 210-358 (359)
45 PF00534 Glycos_transf_1: Glyc 99.6 1E-13 2.2E-18 96.9 13.0 129 1-139 33-171 (172)
46 cd03822 GT1_ecORF704_like This 99.6 7.9E-14 1.7E-18 106.9 13.5 145 2-157 204-365 (366)
47 cd03805 GT1_ALG2_like This fam 99.6 7.1E-14 1.5E-18 109.2 13.4 141 1-152 229-391 (392)
48 cd03813 GT1_like_3 This family 99.6 1.3E-13 2.7E-18 111.2 14.9 145 1-156 311-473 (475)
49 cd03794 GT1_wbuB_like This fam 99.6 8.9E-14 1.9E-18 106.6 13.3 141 2-153 239-393 (394)
50 KOG3349 Predicted glycosyltran 99.6 5.9E-14 1.3E-18 94.5 10.6 108 3-110 25-136 (170)
51 cd03812 GT1_CapH_like This fam 99.6 9.2E-14 2E-18 106.9 13.2 130 1-141 210-346 (358)
52 PLN02670 transferase, transfer 99.6 1.9E-13 4.1E-18 109.7 15.3 117 37-158 339-464 (472)
53 cd03821 GT1_Bme6_like This fam 99.6 1.9E-13 4.1E-18 104.4 14.5 141 2-154 222-374 (375)
54 cd03817 GT1_UGDG_like This fam 99.5 2.4E-13 5.2E-18 104.0 14.2 133 2-145 221-362 (374)
55 cd04946 GT1_AmsK_like This fam 99.5 1.8E-13 4E-18 108.3 13.9 144 1-153 248-405 (407)
56 cd03799 GT1_amsK_like This is 99.5 1.7E-13 3.6E-18 105.1 13.2 141 2-152 198-354 (355)
57 cd03819 GT1_WavL_like This fam 99.5 1.4E-13 3.1E-18 105.7 12.6 131 2-142 204-347 (355)
58 cd03816 GT1_ALG1_like This fam 99.5 6.5E-13 1.4E-17 105.4 16.3 129 1-141 250-399 (415)
59 TIGR02472 sucr_P_syn_N sucrose 99.5 2.5E-13 5.4E-18 108.5 13.7 112 36-157 316-438 (439)
60 cd03796 GT1_PIG-A_like This fa 99.5 2.7E-13 5.9E-18 106.8 13.4 145 1-157 211-365 (398)
61 TIGR02468 sucrsPsyn_pln sucros 99.5 3.2E-13 6.9E-18 115.6 14.0 112 36-157 547-668 (1050)
62 PRK09922 UDP-D-galactose:(gluc 99.5 5.9E-13 1.3E-17 103.6 14.4 134 12-155 208-355 (359)
63 cd03825 GT1_wcfI_like This fam 99.5 4.8E-13 1E-17 103.0 13.0 143 2-158 212-363 (365)
64 cd03798 GT1_wlbH_like This fam 99.5 1E-12 2.2E-17 100.0 14.6 145 2-158 221-375 (377)
65 TIGR02149 glgA_Coryne glycogen 99.5 1.1E-12 2.3E-17 102.5 14.8 136 13-158 228-385 (388)
66 cd03795 GT1_like_4 This family 99.5 8E-13 1.7E-17 101.5 13.6 132 8-149 212-356 (357)
67 TIGR03590 PseG pseudaminic aci 99.5 2.2E-13 4.7E-18 103.0 9.9 80 12-96 197-278 (279)
68 PLN03004 UDP-glycosyltransfera 99.5 1.8E-12 3.9E-17 103.6 13.7 114 14-133 299-431 (451)
69 TIGR00661 MJ1255 conserved hyp 99.5 9.9E-13 2.1E-17 101.1 11.6 87 37-128 229-316 (321)
70 cd03811 GT1_WabH_like This fam 99.5 2.9E-12 6.2E-17 96.9 14.0 127 2-138 208-344 (353)
71 COG3980 spsG Spore coat polysa 99.5 6.9E-13 1.5E-17 98.0 9.8 130 15-150 186-317 (318)
72 PLN02562 UDP-glycosyltransfera 99.4 4.4E-12 9.6E-17 101.6 14.1 115 14-137 303-424 (448)
73 PLN02210 UDP-glucosyl transfer 99.4 7.4E-12 1.6E-16 100.5 15.1 125 13-143 297-438 (456)
74 PLN02410 UDP-glucoronosyl/UDP- 99.4 8.8E-12 1.9E-16 99.8 15.1 85 37-127 324-411 (451)
75 PLN00142 sucrose synthase 99.4 8.6E-12 1.9E-16 104.9 15.4 147 1-157 591-768 (815)
76 cd03804 GT1_wbaZ_like This fam 99.4 2.2E-12 4.8E-17 99.7 11.0 122 7-141 215-342 (351)
77 cd03809 GT1_mtfB_like This fam 99.4 1.8E-12 3.9E-17 99.4 10.4 141 2-154 214-364 (365)
78 TIGR02470 sucr_synth sucrose s 99.4 1.1E-11 2.4E-16 104.1 15.7 146 2-157 569-745 (784)
79 PLN02501 digalactosyldiacylgly 99.4 4.6E-12 9.9E-17 104.4 12.9 138 1-156 564-706 (794)
80 PHA01630 putative group 1 glyc 99.4 8.6E-12 1.9E-16 96.4 13.3 142 1-159 160-330 (331)
81 PLN02949 transferase, transfer 99.4 4.7E-12 1E-16 101.8 11.8 146 1-157 286-454 (463)
82 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 4.3E-12 9.3E-17 98.5 11.2 126 14-153 231-362 (363)
83 PLN02846 digalactosyldiacylgly 99.4 2.1E-11 4.5E-16 97.6 13.8 138 1-157 246-389 (462)
84 TIGR02095 glgA glycogen/starch 99.4 2.1E-11 4.6E-16 98.2 14.0 143 2-158 310-471 (473)
85 PLN00414 glycosyltransferase f 99.4 4.7E-11 1E-15 95.6 15.4 120 12-137 279-414 (446)
86 PLN02554 UDP-glycosyltransfera 99.4 4.3E-11 9.4E-16 96.7 14.9 94 37-135 342-450 (481)
87 PLN02863 UDP-glucoronosyl/UDP- 99.3 7.3E-11 1.6E-15 95.2 15.7 113 13-131 311-439 (477)
88 PLN02448 UDP-glycosyltransfera 99.3 6.7E-11 1.5E-15 95.1 15.4 107 13-127 302-416 (459)
89 cd04955 GT1_like_6 This family 99.3 1.8E-11 3.8E-16 94.3 11.6 130 14-157 221-362 (363)
90 PLN02208 glycosyltransferase f 99.3 2.6E-11 5.6E-16 96.9 12.8 96 37-137 311-413 (442)
91 PRK14099 glycogen synthase; Pr 99.3 3.8E-11 8.3E-16 97.1 13.8 142 2-157 314-476 (485)
92 PLN02173 UDP-glucosyl transfer 99.3 2.6E-11 5.7E-16 97.0 12.6 117 6-128 283-410 (449)
93 PLN03007 UDP-glucosyltransfera 99.3 6.1E-11 1.3E-15 95.9 14.3 109 13-127 313-441 (482)
94 PLN02764 glycosyltransferase f 99.3 7.7E-11 1.7E-15 94.3 14.0 96 37-137 317-419 (453)
95 PRK00654 glgA glycogen synthas 99.3 7.1E-11 1.5E-15 95.1 14.0 143 1-157 300-460 (466)
96 PLN00164 glucosyltransferase; 99.3 1.2E-10 2.6E-15 94.1 15.2 87 37-128 339-433 (480)
97 PLN02992 coniferyl-alcohol glu 99.3 2E-10 4.3E-15 92.6 16.4 86 37-127 338-428 (481)
98 PLN02207 UDP-glycosyltransfera 99.3 1.5E-10 3.3E-15 93.0 15.1 114 13-133 303-435 (468)
99 cd03806 GT1_ALG11_like This fa 99.3 4.4E-11 9.5E-16 95.2 11.9 138 1-149 255-416 (419)
100 PRK14098 glycogen synthase; Pr 99.3 1.1E-10 2.5E-15 94.5 14.1 146 2-157 326-483 (489)
101 PLN02167 UDP-glycosyltransfera 99.3 1.6E-10 3.5E-15 93.3 14.7 112 13-131 308-440 (475)
102 PLN02275 transferase, transfer 99.3 8.1E-11 1.8E-15 92.2 12.3 102 11-124 258-371 (371)
103 PRK14089 ipid-A-disaccharide s 99.3 8.4E-11 1.8E-15 91.2 11.0 142 3-156 190-347 (347)
104 PF13692 Glyco_trans_1_4: Glyc 99.3 9E-12 2E-16 83.7 4.9 109 2-126 21-135 (135)
105 PLN02152 indole-3-acetate beta 99.2 3.8E-10 8.3E-15 90.5 14.7 101 36-141 326-437 (455)
106 KOG1192 UDP-glucuronosyl and U 99.2 3.5E-10 7.6E-15 91.5 14.6 133 5-141 301-437 (496)
107 cd04950 GT1_like_1 Glycosyltra 99.2 1.4E-10 3.1E-15 90.8 12.0 136 3-156 221-368 (373)
108 TIGR02400 trehalose_OtsA alpha 99.2 3.8E-10 8.2E-15 90.7 14.1 146 1-159 277-456 (456)
109 COG0381 WecB UDP-N-acetylgluco 99.2 4.5E-10 9.7E-15 86.9 13.2 145 2-158 225-373 (383)
110 PHA01633 putative glycosyl tra 99.2 2.4E-10 5.3E-15 88.2 11.6 146 1-154 166-334 (335)
111 PLN02555 limonoid glucosyltran 99.2 2.3E-10 4.9E-15 92.3 11.1 86 37-127 337-430 (480)
112 PLN02939 transferase, transfer 99.2 7.1E-10 1.5E-14 94.4 14.5 147 2-156 798-963 (977)
113 cd03791 GT1_Glycogen_synthase_ 99.2 7.3E-10 1.6E-14 89.2 13.5 143 2-158 315-475 (476)
114 cd03788 GT1_TPS Trehalose-6-Ph 99.1 6.9E-10 1.5E-14 89.3 10.4 142 1-155 282-457 (460)
115 cd03802 GT1_AviGT4_like This f 99.1 4.5E-09 9.8E-14 80.1 14.1 129 12-157 195-334 (335)
116 PF02350 Epimerase_2: UDP-N-ac 99.1 3E-09 6.5E-14 82.7 12.1 139 3-154 204-346 (346)
117 PRK10125 putative glycosyl tra 99.1 3.3E-09 7.2E-14 84.2 12.1 105 37-157 286-402 (405)
118 COG0763 LpxB Lipid A disacchar 99.1 6.5E-09 1.4E-13 80.4 13.3 153 2-158 210-380 (381)
119 PLN03015 UDP-glucosyl transfer 99.1 1.7E-08 3.7E-13 81.2 16.0 84 37-125 335-425 (470)
120 PF02684 LpxB: Lipid-A-disacch 99.0 8.1E-09 1.8E-13 80.8 13.5 133 1-137 205-351 (373)
121 PLN02316 synthase/transferase 99.0 9.7E-09 2.1E-13 88.7 15.0 144 2-157 859-1031(1036)
122 COG1519 KdtA 3-deoxy-D-manno-o 99.0 2.5E-08 5.3E-13 78.0 14.5 144 2-154 248-416 (419)
123 COG5017 Uncharacterized conser 99.0 2.8E-09 6.1E-14 70.9 7.8 93 10-109 26-124 (161)
124 TIGR03713 acc_sec_asp1 accesso 99.0 7.7E-09 1.7E-13 84.3 11.3 142 1-157 338-519 (519)
125 PLN03063 alpha,alpha-trehalose 98.9 3E-08 6.6E-13 84.5 13.2 143 1-155 297-473 (797)
126 PLN02534 UDP-glycosyltransfera 98.9 1.9E-08 4.1E-13 81.5 10.1 106 14-125 312-443 (491)
127 COG0438 RfaG Glycosyltransfera 98.9 2.8E-07 6E-12 69.0 15.9 146 2-157 218-374 (381)
128 cd01635 Glycosyltransferase_GT 98.9 1.1E-08 2.4E-13 73.3 7.5 82 2-83 123-214 (229)
129 PRK14501 putative bifunctional 98.8 5.4E-08 1.2E-12 82.5 9.9 143 1-156 283-459 (726)
130 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 2.1E-07 4.6E-12 72.9 12.0 103 36-153 261-365 (365)
131 TIGR02919 accessory Sec system 98.7 2.2E-07 4.9E-12 74.3 12.2 133 2-147 294-432 (438)
132 PF13844 Glyco_transf_41: Glyc 98.6 1.3E-06 2.8E-11 70.1 13.6 150 2-157 302-464 (468)
133 PRK01021 lpxB lipid-A-disaccha 98.5 6.1E-06 1.3E-10 68.0 15.1 136 13-154 445-604 (608)
134 PRK09814 beta-1,6-galactofuran 98.5 4.3E-06 9.3E-11 64.7 13.5 109 12-141 188-313 (333)
135 KOG1111 N-acetylglucosaminyltr 98.5 2.2E-06 4.9E-11 65.9 11.4 83 2-84 214-305 (426)
136 PF13524 Glyco_trans_1_2: Glyc 98.5 9.9E-07 2.1E-11 55.5 7.7 80 64-155 12-92 (92)
137 KOG0853 Glycosyltransferase [C 98.5 5.8E-07 1.3E-11 72.1 7.3 123 27-157 332-465 (495)
138 TIGR02398 gluc_glyc_Psyn gluco 98.4 2.2E-05 4.8E-10 63.7 14.8 114 2-128 304-450 (487)
139 PF04007 DUF354: Protein of un 98.3 3.7E-05 8E-10 59.6 13.2 102 39-157 233-334 (335)
140 COG4370 Uncharacterized protei 98.3 3.9E-06 8.4E-11 63.4 7.1 112 37-157 294-411 (412)
141 PLN03064 alpha,alpha-trehalose 98.2 9.4E-05 2E-09 64.1 16.0 139 2-152 382-554 (934)
142 cd03793 GT1_Glycogen_synthase_ 98.2 6.5E-06 1.4E-10 67.5 8.5 104 47-155 467-582 (590)
143 PF04464 Glyphos_transf: CDP-G 97.7 0.00015 3.2E-09 56.8 7.5 135 12-155 227-369 (369)
144 PRK10017 colanic acid biosynth 97.7 0.0031 6.7E-08 50.7 14.3 86 47-140 320-407 (426)
145 KOG2941 Beta-1,4-mannosyltrans 97.5 0.0026 5.7E-08 49.3 11.4 127 12-151 291-437 (444)
146 PF05159 Capsule_synth: Capsul 97.5 0.0011 2.4E-08 49.8 9.1 78 3-82 144-226 (269)
147 PF06258 Mito_fiss_Elm1: Mitoc 97.3 0.0064 1.4E-07 46.9 11.8 103 3-107 172-281 (311)
148 COG1817 Uncharacterized protei 97.3 0.0042 9E-08 47.5 9.8 72 47-128 245-316 (346)
149 COG0297 GlgA Glycogen synthase 97.2 0.015 3.3E-07 47.4 12.5 119 2-125 313-441 (487)
150 PF07429 Glyco_transf_56: 4-al 97.0 0.071 1.5E-06 41.5 14.2 116 2-125 201-332 (360)
151 COG3914 Spy Predicted O-linked 97.0 0.069 1.5E-06 44.1 14.5 145 3-156 448-610 (620)
152 TIGR02193 heptsyl_trn_I lipopo 96.9 0.012 2.7E-07 45.1 9.6 115 3-124 198-319 (319)
153 cd03789 GT1_LPS_heptosyltransf 96.3 0.029 6.4E-07 42.2 8.1 65 14-80 153-223 (279)
154 PRK10964 ADP-heptose:LPS hepto 96.2 0.04 8.7E-07 42.4 8.3 76 4-80 198-278 (322)
155 PF00982 Glyco_transf_20: Glyc 96.0 0.28 6E-06 40.1 12.6 128 2-142 295-457 (474)
156 PRK10117 trehalose-6-phosphate 96.0 0.17 3.8E-06 41.2 11.3 130 2-144 274-438 (474)
157 PRK02797 4-alpha-L-fucosyltran 95.8 0.62 1.4E-05 35.9 15.3 109 3-119 163-287 (322)
158 PF01075 Glyco_transf_9: Glyco 95.6 0.087 1.9E-06 38.7 7.7 77 3-80 124-208 (247)
159 PF05693 Glycogen_syn: Glycoge 95.6 0.29 6.2E-06 41.0 11.0 97 47-151 462-573 (633)
160 TIGR02195 heptsyl_trn_II lipop 95.5 0.11 2.4E-06 40.1 8.3 76 4-80 195-276 (334)
161 COG0859 RfaF ADP-heptose:LPS h 95.5 0.092 2E-06 40.8 7.8 65 15-80 209-276 (334)
162 PRK10916 ADP-heptose:LPS hepto 95.4 0.12 2.6E-06 40.2 8.2 76 4-80 201-286 (348)
163 KOG1387 Glycosyltransferase [C 95.4 0.29 6.2E-06 38.4 9.8 133 13-154 304-453 (465)
164 KOG4626 O-linked N-acetylgluco 95.3 0.2 4.3E-06 42.2 9.4 132 2-139 776-917 (966)
165 COG3660 Predicted nucleoside-d 95.2 0.57 1.2E-05 35.4 10.6 34 48-81 238-272 (329)
166 PRK10422 lipopolysaccharide co 95.1 0.18 3.9E-06 39.3 8.4 76 4-80 203-287 (352)
167 TIGR02201 heptsyl_trn_III lipo 94.4 0.31 6.7E-06 37.8 8.1 76 4-80 201-285 (344)
168 TIGR02094 more_P_ylases alpha- 94.3 2.5 5.5E-05 35.7 13.6 110 37-156 458-597 (601)
169 PLN02205 alpha,alpha-trehalose 94.3 1.9 4E-05 38.1 13.2 113 2-127 358-518 (854)
170 COG1887 TagB Putative glycosyl 94.1 2.5 5.4E-05 33.8 13.1 101 46-155 278-386 (388)
171 PF11071 DUF2872: Protein of u 93.6 0.21 4.5E-06 33.4 4.8 35 48-82 66-108 (141)
172 COG0380 OtsA Trehalose-6-phosp 93.5 3.6 7.8E-05 33.8 12.8 126 2-140 301-461 (486)
173 cd04299 GT1_Glycogen_Phosphory 93.0 2.8 6E-05 36.6 11.8 108 37-154 547-684 (778)
174 TIGR00730 conserved hypothetic 92.7 1.2 2.7E-05 31.5 8.0 36 47-82 89-134 (178)
175 PF15024 Glyco_transf_18: Glyc 92.1 0.39 8.5E-06 39.8 5.4 76 47-127 334-431 (559)
176 PF05014 Nuc_deoxyrib_tr: Nucl 91.9 0.34 7.4E-06 31.4 4.2 34 49-82 56-97 (113)
177 COG2327 WcaK Polysaccharide py 91.6 2.7 5.9E-05 33.5 9.4 77 47-131 278-356 (385)
178 PF03641 Lysine_decarbox: Poss 91.0 2.3 5E-05 28.5 7.5 37 46-82 45-92 (133)
179 TIGR03646 YtoQ_fam YtoQ family 91.0 0.52 1.1E-05 31.6 4.2 35 48-82 69-111 (144)
180 PF10087 DUF2325: Uncharacteri 89.3 3.8 8.2E-05 25.7 7.1 66 17-82 2-83 (97)
181 PF04230 PS_pyruv_trans: Polys 89.0 3.6 7.8E-05 29.9 7.9 35 47-82 250-284 (286)
182 TIGR03609 S_layer_CsaB polysac 86.9 11 0.00023 28.6 9.5 35 47-82 243-277 (298)
183 COG1618 Predicted nucleotide k 86.8 3.5 7.6E-05 29.0 6.1 74 46-125 92-176 (179)
184 cd05565 PTS_IIB_lactose PTS_II 85.3 7.4 0.00016 24.8 6.8 66 16-81 2-79 (99)
185 COG4641 Uncharacterized protei 84.0 5.1 0.00011 31.7 6.5 82 48-141 251-342 (373)
186 COG1519 KdtA 3-deoxy-D-manno-o 83.5 10 0.00022 30.6 8.1 77 5-81 69-153 (419)
187 PLN02929 NADH kinase 83.2 6.2 0.00014 30.4 6.7 75 49-126 59-137 (301)
188 cd05564 PTS_IIB_chitobiose_lic 83.1 9.1 0.0002 24.0 6.5 67 16-82 1-79 (96)
189 PRK04885 ppnK inorganic polyph 82.3 6.1 0.00013 29.9 6.2 30 53-82 34-69 (265)
190 PRK02649 ppnK inorganic polyph 82.1 5.3 0.00012 30.8 5.9 30 53-82 67-100 (305)
191 PRK03372 ppnK inorganic polyph 81.5 7.1 0.00015 30.2 6.5 30 53-82 71-104 (306)
192 PRK04539 ppnK inorganic polyph 81.1 8.3 0.00018 29.6 6.7 30 53-82 67-100 (296)
193 PF02445 NadA: Quinolinate syn 81.1 2.1 4.5E-05 32.9 3.3 57 26-82 88-144 (296)
194 PRK01911 ppnK inorganic polyph 80.7 6.8 0.00015 30.1 6.1 30 53-82 63-96 (292)
195 cd07347 harmonin_N_like N-term 78.5 10 0.00022 23.1 5.2 45 113-158 5-49 (78)
196 PRK14077 pnk inorganic polypho 78.4 8.5 0.00018 29.5 6.0 33 50-82 60-96 (287)
197 PRK10586 putative oxidoreducta 78.4 17 0.00037 28.8 7.8 78 4-83 24-119 (362)
198 PRK10017 colanic acid biosynth 77.6 37 0.00079 27.6 11.3 37 47-83 110-157 (426)
199 cd08177 MAR Maleylacetate redu 76.9 26 0.00057 27.3 8.5 77 5-83 14-110 (337)
200 TIGR00288 conserved hypothetic 76.7 9.3 0.0002 26.6 5.3 57 3-60 96-154 (160)
201 PF04413 Glycos_transf_N: 3-De 76.6 14 0.00029 26.3 6.3 78 4-81 40-125 (186)
202 PRK01185 ppnK inorganic polyph 76.5 11 0.00023 28.7 6.0 53 54-126 52-105 (271)
203 cd01080 NAD_bind_m-THF_DH_Cycl 76.2 17 0.00037 25.4 6.6 69 13-83 43-116 (168)
204 PRK00994 F420-dependent methyl 76.1 16 0.00035 27.3 6.5 42 62-108 74-116 (277)
205 TIGR02638 lactal_redase lactal 76.0 30 0.00066 27.4 8.7 78 5-83 20-139 (379)
206 PRK14075 pnk inorganic polypho 75.7 12 0.00026 28.1 6.1 30 53-82 40-70 (256)
207 PF10093 DUF2331: Uncharacteri 75.6 22 0.00048 28.3 7.7 45 38-83 245-291 (374)
208 PRK02155 ppnK NAD(+)/NADH kina 75.2 13 0.00028 28.5 6.2 30 53-82 62-95 (291)
209 TIGR00853 pts-lac PTS system, 75.2 18 0.00038 22.7 7.1 68 15-82 4-83 (95)
210 TIGR00725 conserved hypothetic 74.6 7.2 0.00016 27.0 4.3 36 48-83 85-124 (159)
211 PRK09375 quinolinate synthetas 73.5 6.5 0.00014 30.6 4.2 58 26-83 109-166 (319)
212 cd08172 GlyDH-like1 Glycerol d 73.3 26 0.00056 27.4 7.6 77 4-83 14-109 (347)
213 PRK03501 ppnK inorganic polyph 72.9 18 0.00039 27.4 6.4 30 53-82 38-72 (264)
214 PLN02935 Bifunctional NADH kin 72.9 13 0.00028 30.8 5.9 54 53-126 261-318 (508)
215 PRK10624 L-1,2-propanediol oxi 72.8 43 0.00093 26.6 8.9 79 5-84 21-141 (382)
216 PRK03378 ppnK inorganic polyph 72.8 14 0.00031 28.3 6.0 31 52-82 61-95 (292)
217 PRK04761 ppnK inorganic polyph 72.5 16 0.00035 27.3 6.0 29 54-82 25-57 (246)
218 PRK02231 ppnK inorganic polyph 72.5 16 0.00036 27.7 6.1 33 50-82 38-74 (272)
219 cd08176 LPO Lactadehyde:propan 72.3 37 0.00079 26.9 8.4 78 5-83 19-136 (377)
220 cd07766 DHQ_Fe-ADH Dehydroquin 72.2 43 0.00093 25.8 9.0 78 5-83 14-113 (332)
221 PF03016 Exostosin: Exostosin 71.9 6.4 0.00014 29.6 3.9 35 47-81 229-268 (302)
222 PF01993 MTD: methylene-5,6,7, 71.6 7.8 0.00017 28.9 4.0 41 63-108 74-115 (276)
223 cd08551 Fe-ADH iron-containing 70.1 49 0.0011 26.0 8.6 78 5-83 14-131 (370)
224 COG0379 NadA Quinolinate synth 69.1 14 0.00029 28.8 5.0 49 35-83 120-168 (324)
225 PRK10342 glycerate kinase I; P 69.0 45 0.00098 26.7 8.1 35 47-81 277-323 (381)
226 PRK01231 ppnK inorganic polyph 68.9 20 0.00044 27.5 6.0 30 53-82 61-94 (295)
227 cd08181 PPD-like 1,3-propanedi 68.8 55 0.0012 25.7 8.8 77 5-83 17-133 (357)
228 PLN02727 NAD kinase 68.5 18 0.00039 32.3 6.1 54 53-126 742-799 (986)
229 cd08194 Fe-ADH6 Iron-containin 68.5 57 0.0012 25.8 9.0 77 6-83 15-131 (375)
230 PF01113 DapB_N: Dihydrodipico 67.7 17 0.00036 23.9 4.7 37 46-82 59-99 (124)
231 cd08193 HVD 5-hydroxyvalerate 67.5 60 0.0013 25.7 9.1 78 5-83 17-134 (376)
232 COG3613 Nucleoside 2-deoxyribo 67.2 9 0.00019 27.0 3.4 33 50-82 64-106 (172)
233 TIGR00511 ribulose_e2b2 ribose 67.2 43 0.00094 25.8 7.5 70 10-80 137-223 (301)
234 PF03435 Saccharop_dh: Sacchar 67.0 57 0.0012 25.7 8.4 71 7-79 15-96 (386)
235 PRK09932 glycerate kinase II; 67.0 54 0.0012 26.3 8.1 35 47-81 277-323 (381)
236 cd08171 GlyDH-like2 Glycerol d 66.7 59 0.0013 25.4 8.4 77 5-83 14-111 (345)
237 PRK03708 ppnK inorganic polyph 66.6 20 0.00042 27.3 5.5 29 54-82 57-88 (277)
238 cd08174 G1PDH-like Glycerol-1- 66.1 60 0.0013 25.1 8.5 68 15-83 26-108 (331)
239 TIGR00732 dprA DNA protecting 65.4 51 0.0011 24.1 11.7 42 62-106 168-211 (220)
240 PF13685 Fe-ADH_2: Iron-contai 65.2 34 0.00074 25.6 6.4 80 2-83 7-108 (250)
241 TIGR00045 glycerate kinase. Th 65.0 60 0.0013 26.0 8.0 35 47-81 276-322 (375)
242 PF01008 IF-2B: Initiation fac 64.9 36 0.00078 25.6 6.7 68 12-80 131-216 (282)
243 COG3563 KpsC Capsule polysacch 64.6 39 0.00085 28.1 7.0 76 5-83 172-253 (671)
244 cd08549 G1PDH_related Glycerol 64.6 59 0.0013 25.3 7.9 29 54-83 80-113 (332)
245 cd08550 GlyDH-like Glycerol_de 64.1 67 0.0014 25.1 8.2 78 4-83 13-110 (349)
246 PF13241 NAD_binding_7: Putati 64.0 18 0.00038 22.9 4.2 70 14-83 7-94 (103)
247 cd07038 TPP_PYR_PDC_IPDC_like 64.0 45 0.00097 23.0 8.8 76 4-81 2-92 (162)
248 cd07358 harmonin_N_like_1 Doma 62.8 32 0.00068 20.8 5.0 19 112-130 36-54 (78)
249 PRK09375 quinolinate synthetas 62.5 73 0.0016 24.9 10.5 77 5-82 168-250 (319)
250 cd08188 Fe-ADH4 Iron-containin 62.5 77 0.0017 25.1 8.7 78 5-83 19-136 (377)
251 cd08175 G1PDH Glycerol-1-phosp 62.3 73 0.0016 24.8 8.8 29 54-83 80-113 (348)
252 PRK14076 pnk inorganic polypho 62.0 28 0.00062 29.3 6.1 30 53-82 347-380 (569)
253 PF06506 PrpR_N: Propionate ca 61.9 3.4 7.3E-05 29.0 0.6 30 53-83 33-62 (176)
254 TIGR02329 propionate_PrpR prop 61.9 96 0.0021 26.0 10.1 29 54-83 54-82 (526)
255 cd08187 BDH Butanol dehydrogen 61.8 79 0.0017 25.1 8.7 77 5-83 20-137 (382)
256 PF01118 Semialdhyde_dh: Semia 61.1 31 0.00068 22.3 5.1 71 5-78 15-94 (121)
257 PRK15454 ethanol dehydrogenase 61.1 85 0.0018 25.2 9.2 77 6-83 41-157 (395)
258 COG1184 GCD2 Translation initi 60.4 78 0.0017 24.5 8.0 67 13-80 144-227 (301)
259 COG1929 Glycerate kinase [Carb 59.6 16 0.00035 28.9 3.9 44 38-81 268-323 (378)
260 PRK08535 translation initiatio 59.2 71 0.0015 24.7 7.5 69 11-80 143-228 (310)
261 COG2099 CobK Precorrin-6x redu 59.1 19 0.00042 27.1 4.1 40 44-83 183-231 (257)
262 PRK11475 DNA-binding transcrip 58.9 66 0.0014 23.2 11.1 105 4-126 5-115 (207)
263 cd08191 HHD 6-hydroxyhexanoate 58.4 92 0.002 24.8 8.8 77 5-83 14-130 (386)
264 PF01936 NYN: NYN domain; Int 57.6 33 0.00071 22.6 4.9 46 15-60 97-144 (146)
265 cd08170 GlyDH Glycerol dehydro 57.2 91 0.002 24.3 8.4 77 5-83 14-110 (351)
266 cd00133 PTS_IIB PTS_IIB: subun 57.1 36 0.00079 19.7 4.8 61 16-81 1-69 (84)
267 TIGR00421 ubiX_pad polyprenyl 56.6 43 0.00094 23.7 5.5 37 69-105 107-143 (181)
268 cd08169 DHQ-like Dehydroquinat 55.9 98 0.0021 24.3 8.0 28 55-83 84-118 (344)
269 cd05212 NAD_bind_m-THF_DH_Cycl 55.6 62 0.0013 21.9 7.0 59 4-63 14-80 (140)
270 cd07037 TPP_PYR_MenD Pyrimidin 55.4 67 0.0015 22.2 9.0 75 5-81 3-93 (162)
271 PRK06015 keto-hydroxyglutarate 55.4 61 0.0013 23.5 6.1 75 3-80 44-123 (201)
272 TIGR03609 S_layer_CsaB polysac 54.7 90 0.002 23.5 7.7 66 12-83 26-108 (298)
273 TIGR00550 nadA quinolinate syn 54.5 62 0.0013 25.1 6.4 80 4-83 63-152 (310)
274 PRK00843 egsA NAD(P)-dependent 54.1 1.1E+02 0.0023 24.1 8.9 79 5-84 24-121 (350)
275 PRK07449 2-succinyl-5-enolpyru 53.9 1.3E+02 0.0028 25.2 8.7 76 4-81 14-105 (568)
276 COG0800 Eda 2-keto-3-deoxy-6-p 53.8 66 0.0014 23.6 6.0 73 3-78 53-130 (211)
277 PF02571 CbiJ: Precorrin-6x re 53.5 34 0.00073 25.6 4.7 71 13-83 129-228 (249)
278 COG0409 HypD Hydrogenase matur 52.5 45 0.00097 26.2 5.2 70 10-81 25-120 (364)
279 cd08183 Fe-ADH2 Iron-containin 52.3 1.2E+02 0.0025 24.1 8.5 59 5-64 14-85 (374)
280 PF00465 Fe-ADH: Iron-containi 51.7 1.1E+02 0.0023 24.1 7.5 79 3-84 12-131 (366)
281 PRK13932 stationary phase surv 51.5 21 0.00046 26.9 3.4 34 49-82 85-133 (257)
282 PRK05928 hemD uroporphyrinogen 51.4 90 0.0019 22.5 11.6 103 13-124 124-248 (249)
283 PRK09590 celB cellobiose phosp 50.6 65 0.0014 20.6 6.9 67 16-82 3-83 (104)
284 PRK00002 aroB 3-dehydroquinate 50.3 98 0.0021 24.3 7.1 28 55-83 93-127 (358)
285 TIGR01182 eda Entner-Doudoroff 49.5 85 0.0018 22.8 6.1 75 3-80 48-127 (204)
286 PRK09860 putative alcohol dehy 48.3 1.4E+02 0.003 23.8 10.0 78 5-83 22-139 (383)
287 TIGR00550 nadA quinolinate syn 48.3 91 0.002 24.2 6.5 74 8-82 157-238 (310)
288 PF01975 SurE: Survival protei 48.3 22 0.00049 25.5 3.0 28 55-82 92-133 (196)
289 PF07287 DUF1446: Protein of u 48.2 1.1E+02 0.0024 24.4 7.0 23 60-82 146-168 (362)
290 COG0496 SurE Predicted acid ph 47.9 26 0.00057 26.3 3.3 35 48-82 75-125 (252)
291 PF11248 DUF3046: Protein of u 47.6 8.7 0.00019 22.3 0.6 24 54-77 23-46 (63)
292 PRK15424 propionate catabolism 47.5 94 0.002 26.2 6.8 29 54-83 64-92 (538)
293 PRK02645 ppnK inorganic polyph 47.4 26 0.00057 27.0 3.4 30 53-82 56-89 (305)
294 PRK10310 PTS system galactitol 46.9 63 0.0014 20.1 4.6 65 15-83 3-76 (94)
295 cd08192 Fe-ADH7 Iron-containin 46.7 1.4E+02 0.0031 23.5 8.6 60 5-64 15-91 (370)
296 PRK05562 precorrin-2 dehydroge 46.6 1.2E+02 0.0025 22.4 9.5 34 50-83 81-119 (223)
297 KOG4180 Predicted kinase [Gene 45.8 9.7 0.00021 29.8 0.8 35 47-81 98-136 (395)
298 PF09949 DUF2183: Uncharacteri 45.1 57 0.0012 20.7 4.2 22 3-24 53-74 (100)
299 PRK05920 aromatic acid decarbo 45.0 82 0.0018 22.9 5.5 37 69-105 125-161 (204)
300 PF00899 ThiF: ThiF family; I 44.8 88 0.0019 20.5 6.0 55 27-81 59-124 (135)
301 cd05568 PTS_IIB_bgl_like PTS_I 44.6 65 0.0014 19.0 6.5 56 16-80 2-66 (85)
302 PRK08266 hypothetical protein; 44.4 1.9E+02 0.004 24.1 8.9 76 4-80 9-100 (542)
303 PRK00561 ppnK inorganic polyph 44.2 38 0.00082 25.6 3.7 31 52-82 31-65 (259)
304 PRK13931 stationary phase surv 44.0 32 0.0007 26.0 3.4 35 48-82 79-129 (261)
305 PF11965 DUF3479: Domain of un 44.0 81 0.0018 22.1 5.1 66 15-80 1-91 (164)
306 COG1611 Predicted Rossmann fol 44.0 29 0.00062 25.2 3.0 31 48-78 104-139 (205)
307 PRK09423 gldA glycerol dehydro 43.2 1.6E+02 0.0035 23.1 8.7 77 5-83 21-117 (366)
308 COG4565 CitB Response regulato 43.0 1.3E+02 0.0028 22.2 6.1 71 6-78 17-100 (224)
309 PRK10736 hypothetical protein; 42.9 1.8E+02 0.0038 23.4 11.6 52 61-120 230-283 (374)
310 PRK13933 stationary phase surv 42.9 35 0.00075 25.7 3.4 29 54-82 87-129 (253)
311 PF02481 DNA_processg_A: DNA r 42.6 1.3E+02 0.0028 21.8 9.0 39 61-102 167-207 (212)
312 cd06167 LabA_like LabA_like pr 42.2 91 0.002 20.7 5.2 41 16-56 102-144 (149)
313 PRK14189 bifunctional 5,10-met 42.1 1.6E+02 0.0034 22.7 7.1 58 5-63 145-210 (285)
314 PRK13935 stationary phase surv 41.9 35 0.00077 25.7 3.3 35 48-82 79-128 (253)
315 PRK08611 pyruvate oxidase; Pro 41.9 2.1E+02 0.0046 24.1 8.3 76 4-80 9-100 (576)
316 PF00391 PEP-utilizers: PEP-ut 41.8 77 0.0017 18.9 4.6 44 37-80 10-59 (80)
317 PRK10360 DNA-binding transcrip 41.4 1.1E+02 0.0024 20.7 12.4 104 16-125 3-117 (196)
318 PRK14191 bifunctional 5,10-met 41.3 1.6E+02 0.0035 22.6 6.8 59 4-63 143-209 (285)
319 PRK14182 bifunctional 5,10-met 40.6 1.6E+02 0.0035 22.6 6.6 58 5-63 144-209 (282)
320 PLN02573 pyruvate decarboxylas 40.4 2.3E+02 0.0049 24.0 8.8 76 4-81 21-111 (578)
321 cd05566 PTS_IIB_galactitol PTS 40.4 83 0.0018 18.9 6.3 60 16-80 2-69 (89)
322 COG3199 Predicted inorganic po 40.4 1.9E+02 0.0041 23.0 7.0 36 48-83 92-132 (355)
323 PRK14183 bifunctional 5,10-met 40.3 1.7E+02 0.0037 22.5 7.0 58 5-63 144-209 (281)
324 PF09547 Spore_IV_A: Stage IV 40.2 1.4E+02 0.0029 24.8 6.4 61 65-125 171-234 (492)
325 PF02882 THF_DHG_CYH_C: Tetrah 40.2 1.3E+02 0.0027 21.0 6.0 59 4-63 22-88 (160)
326 cd08186 Fe-ADH8 Iron-containin 40.1 1.9E+02 0.0041 23.0 8.5 49 16-64 28-94 (383)
327 PRK13142 hisH imidazole glycer 39.9 1.4E+02 0.003 21.4 5.9 60 18-82 4-78 (192)
328 COG1927 Mtd Coenzyme F420-depe 39.7 1.5E+02 0.0033 21.9 10.9 43 61-108 73-116 (277)
329 COG3707 AmiR Response regulato 39.7 1.4E+02 0.0031 21.5 6.8 47 74-127 77-124 (194)
330 PRK08057 cobalt-precorrin-6x r 39.6 64 0.0014 24.1 4.3 30 54-83 190-224 (248)
331 TIGR00036 dapB dihydrodipicoli 39.6 1.6E+02 0.0035 22.1 7.7 73 6-81 18-99 (266)
332 TIGR00661 MJ1255 conserved hyp 39.4 43 0.00093 25.6 3.5 27 54-80 93-119 (321)
333 PRK06552 keto-hydroxyglutarate 39.2 1.5E+02 0.0033 21.6 6.6 77 3-80 53-135 (213)
334 cd08180 PDD 1,3-propanediol de 39.1 1.8E+02 0.0039 22.5 7.9 29 54-83 78-118 (332)
335 PF05729 NACHT: NACHT domain 38.5 1E+02 0.0022 20.4 5.0 42 5-46 109-152 (166)
336 TIGR03358 VI_chp_5 type VI sec 38.1 1.1E+02 0.0023 21.4 4.9 44 109-152 98-141 (159)
337 PRK05447 1-deoxy-D-xylulose 5- 38.1 2.1E+02 0.0046 23.0 8.8 33 48-80 83-121 (385)
338 TIGR00482 nicotinate (nicotina 38.0 66 0.0014 22.8 4.1 48 3-63 82-130 (193)
339 TIGR03837 efp_adjacent_2 conse 37.7 2.1E+02 0.0046 22.9 7.7 45 38-83 243-289 (371)
340 PRK14169 bifunctional 5,10-met 37.7 1.9E+02 0.0041 22.2 6.7 59 4-63 142-208 (282)
341 cd05567 PTS_IIB_mannitol PTS_I 37.3 95 0.0021 18.8 4.7 63 16-81 2-72 (87)
342 COG0771 MurD UDP-N-acetylmuram 37.3 1.5E+02 0.0032 24.5 6.3 29 50-78 65-97 (448)
343 PF02595 Gly_kinase: Glycerate 37.3 20 0.00044 28.6 1.5 35 47-81 277-323 (377)
344 cd08197 DOIS 2-deoxy-scyllo-in 37.0 2.1E+02 0.0045 22.6 8.0 78 5-83 14-119 (355)
345 PRK08199 thiamine pyrophosphat 36.9 2.5E+02 0.0054 23.5 8.2 75 4-80 13-103 (557)
346 PLN02819 lysine-ketoglutarate 36.8 3.5E+02 0.0075 25.1 12.1 36 46-81 640-679 (1042)
347 cd08179 NADPH_BDH NADPH-depend 36.0 2E+02 0.0044 22.7 6.9 50 15-64 24-91 (375)
348 PRK10840 transcriptional regul 35.1 1.6E+02 0.0035 20.7 12.6 104 15-125 4-125 (216)
349 COG0371 GldA Glycerol dehydrog 35.0 2.3E+02 0.0051 22.6 9.0 77 7-84 23-118 (360)
350 cd08185 Fe-ADH1 Iron-containin 34.9 2.3E+02 0.005 22.4 8.8 59 5-64 17-93 (380)
351 COG0061 nadF NAD kinase [Coenz 34.8 1.3E+02 0.0029 22.8 5.5 30 53-82 54-87 (281)
352 PRK13934 stationary phase surv 34.6 38 0.00082 25.7 2.4 17 66-82 111-127 (266)
353 TIGR00173 menD 2-succinyl-5-en 34.3 2.5E+02 0.0054 22.7 8.2 75 4-80 5-95 (432)
354 PF02670 DXP_reductoisom: 1-de 34.3 1.4E+02 0.0031 19.9 7.4 76 7-83 16-99 (129)
355 PRK14170 bifunctional 5,10-met 34.2 1.2E+02 0.0026 23.3 5.1 59 4-63 143-209 (284)
356 TIGR00715 precor6x_red precorr 33.9 75 0.0016 23.9 4.0 31 53-83 196-232 (256)
357 PRK14187 bifunctional 5,10-met 33.6 1.3E+02 0.0028 23.3 5.2 58 5-63 147-212 (294)
358 cd08173 Gro1PDH Sn-glycerol-1- 33.5 2.3E+02 0.005 22.0 8.9 29 54-83 78-111 (339)
359 TIGR00087 surE 5'/3'-nucleotid 33.5 48 0.001 24.8 2.8 35 48-82 79-128 (244)
360 PRK14176 bifunctional 5,10-met 33.2 2.3E+02 0.0049 21.9 6.6 58 5-63 151-216 (287)
361 PRK00973 glucose-6-phosphate i 32.9 2.4E+02 0.0051 23.2 6.9 27 38-64 110-144 (446)
362 PRK10499 PTS system N,N'-diace 32.8 1.3E+02 0.0029 19.1 6.1 67 16-82 5-81 (106)
363 COG3516 Predicted component of 32.7 1.3E+02 0.0029 21.1 4.6 16 109-124 103-118 (169)
364 PRK14172 bifunctional 5,10-met 32.7 2.3E+02 0.0049 21.7 7.0 58 5-63 145-210 (278)
365 PRK14175 bifunctional 5,10-met 32.7 2.3E+02 0.005 21.8 7.2 58 5-63 145-210 (286)
366 PRK06718 precorrin-2 dehydroge 32.5 1.9E+02 0.0041 20.7 7.5 34 50-83 66-103 (202)
367 PF10649 DUF2478: Protein of u 32.4 64 0.0014 22.5 3.1 33 48-80 86-129 (159)
368 PRK08155 acetolactate synthase 32.4 3E+02 0.0065 23.1 8.6 76 4-81 18-109 (564)
369 PF02302 PTS_IIB: PTS system, 32.4 1.1E+02 0.0025 18.2 6.0 65 16-81 1-74 (90)
370 COG2204 AtoC Response regulato 32.2 3E+02 0.0064 22.9 13.0 106 17-129 7-125 (464)
371 PRK14177 bifunctional 5,10-met 32.1 1.3E+02 0.0029 23.1 5.1 58 5-63 146-211 (284)
372 PRK14186 bifunctional 5,10-met 32.1 1.4E+02 0.0029 23.2 5.1 59 4-63 144-210 (297)
373 PRK12446 undecaprenyldiphospho 32.1 65 0.0014 25.2 3.5 29 54-82 91-122 (352)
374 PF01513 NAD_kinase: ATP-NAD k 32.0 56 0.0012 24.8 3.1 34 49-82 71-108 (285)
375 PF04909 Amidohydro_2: Amidohy 31.9 38 0.00081 24.7 2.1 12 128-139 258-269 (273)
376 PF01081 Aldolase: KDPG and KH 31.6 92 0.002 22.5 3.9 75 3-80 48-127 (196)
377 PRK14180 bifunctional 5,10-met 31.5 1.4E+02 0.0029 23.0 5.0 59 4-63 144-210 (282)
378 PRK14171 bifunctional 5,10-met 31.4 1.4E+02 0.0029 23.1 5.0 58 5-63 146-211 (288)
379 PRK13525 glutamine amidotransf 31.4 1.9E+02 0.0041 20.4 7.1 33 50-82 34-80 (189)
380 PF00389 2-Hacid_dh: D-isomer 31.2 1.5E+02 0.0033 19.3 11.8 77 38-120 20-101 (133)
381 PRK00071 nadD nicotinic acid m 31.1 92 0.002 22.2 3.9 48 3-63 89-137 (203)
382 PRK00346 surE 5'(3')-nucleotid 30.7 52 0.0011 24.7 2.6 35 48-82 75-124 (250)
383 PRK06882 acetolactate synthase 30.7 3.3E+02 0.007 22.9 8.6 75 4-80 9-99 (574)
384 PRK06029 3-octaprenyl-4-hydrox 30.5 1.3E+02 0.0027 21.5 4.4 37 69-105 110-146 (185)
385 PF11238 DUF3039: Protein of u 30.4 45 0.00098 19.0 1.7 16 65-80 15-30 (58)
386 PF00731 AIRC: AIR carboxylase 30.2 1.9E+02 0.0041 20.0 5.8 37 47-83 43-87 (150)
387 PRK14173 bifunctional 5,10-met 30.1 1.6E+02 0.0034 22.7 5.2 59 4-63 141-207 (287)
388 COG1454 EutG Alcohol dehydroge 29.9 2.9E+02 0.0063 22.2 6.8 60 5-64 20-96 (377)
389 COG1440 CelA Phosphotransferas 29.9 1.6E+02 0.0034 19.0 6.7 67 16-82 3-81 (102)
390 PRK06973 nicotinic acid mononu 29.7 94 0.002 23.2 3.8 17 47-63 141-158 (243)
391 PRK13181 hisH imidazole glycer 29.6 2.1E+02 0.0045 20.3 6.7 58 21-82 7-80 (199)
392 PLN02516 methylenetetrahydrofo 29.6 1.6E+02 0.0035 22.8 5.2 58 5-63 154-219 (299)
393 cd06578 HemD Uroporphyrinogen- 29.4 2.1E+02 0.0045 20.3 9.5 104 6-118 112-237 (239)
394 PF05591 DUF770: Protein of un 28.9 1.6E+02 0.0034 20.5 4.6 28 109-136 97-124 (157)
395 KOG3742 Glycogen synthase [Car 28.8 1E+02 0.0022 25.7 4.0 84 47-135 493-586 (692)
396 PRK14181 bifunctional 5,10-met 28.7 1.8E+02 0.0039 22.4 5.2 59 4-63 139-209 (287)
397 TIGR03405 Phn_Fe-ADH phosphona 28.7 2.9E+02 0.0063 21.7 8.5 49 15-64 24-90 (355)
398 COG1058 CinA Predicted nucleot 28.4 85 0.0019 23.7 3.4 32 48-80 54-93 (255)
399 PLN02897 tetrahydrofolate dehy 28.3 1.5E+02 0.0034 23.4 4.9 58 5-63 201-266 (345)
400 TIGR00075 hypD hydrogenase exp 28.1 3E+02 0.0066 22.0 6.5 66 13-80 32-121 (369)
401 TIGR03393 indolpyr_decarb indo 28.1 3.5E+02 0.0077 22.5 7.8 45 37-81 38-96 (539)
402 PRK10637 cysG siroheme synthas 28.0 3.4E+02 0.0073 22.2 8.8 34 50-83 68-106 (457)
403 PRK14190 bifunctional 5,10-met 28.0 2.8E+02 0.0061 21.3 7.1 59 4-63 144-210 (284)
404 TIGR02355 moeB molybdopterin s 28.0 2.5E+02 0.0054 20.7 6.1 45 36-80 91-145 (240)
405 PRK14185 bifunctional 5,10-met 27.9 2E+02 0.0043 22.2 5.4 58 5-63 144-213 (293)
406 PLN02616 tetrahydrofolate dehy 27.7 1.8E+02 0.0038 23.3 5.1 58 5-63 218-283 (364)
407 TIGR02720 pyruv_oxi_spxB pyruv 27.7 3.7E+02 0.0081 22.6 8.8 76 4-80 4-95 (575)
408 PRK07282 acetolactate synthase 27.6 3.7E+02 0.0081 22.6 8.4 75 4-80 15-105 (566)
409 KOG1021 Acetylglucosaminyltran 27.5 97 0.0021 25.5 3.9 36 47-82 336-376 (464)
410 PF01408 GFO_IDH_MocA: Oxidore 27.3 1.6E+02 0.0036 18.4 8.2 72 6-82 17-95 (120)
411 PTZ00408 NAD-dependent deacety 27.3 2E+02 0.0044 21.4 5.3 47 36-82 150-207 (242)
412 PF00926 DHBP_synthase: 3,4-di 26.8 1.2E+02 0.0026 21.9 3.8 16 67-82 4-19 (194)
413 TIGR00118 acolac_lg acetolacta 26.8 3.8E+02 0.0082 22.4 8.8 75 4-80 6-96 (558)
414 PF04208 MtrA: Tetrahydrometha 26.6 73 0.0016 22.5 2.6 14 11-24 64-77 (176)
415 PRK08887 nicotinic acid mononu 26.5 2.3E+02 0.005 19.8 7.0 44 4-60 88-131 (174)
416 PRK14166 bifunctional 5,10-met 26.2 3E+02 0.0066 21.1 7.1 59 4-63 143-209 (282)
417 PRK14184 bifunctional 5,10-met 26.2 2.2E+02 0.0048 21.9 5.3 58 5-63 144-213 (286)
418 cd01750 GATase1_CobQ Type 1 gl 26.0 2.4E+02 0.0052 19.9 6.4 60 18-81 3-79 (194)
419 PRK13940 glutamyl-tRNA reducta 26.0 1.4E+02 0.0031 24.2 4.5 37 46-82 234-272 (414)
420 COG0052 RpsB Ribosomal protein 25.9 1.6E+02 0.0034 22.2 4.4 29 55-83 157-188 (252)
421 cd01409 SIRT4 SIRT4: Eukaryoti 25.8 2.4E+02 0.0052 21.2 5.5 47 36-82 180-239 (260)
422 COG3414 SgaB Phosphotransferas 25.7 1.1E+02 0.0023 19.3 3.0 46 15-61 2-56 (93)
423 cd08182 HEPD Hydroxyethylphosp 25.4 3.4E+02 0.0073 21.3 9.6 60 5-64 14-87 (367)
424 PRK00861 putative lipid kinase 25.3 3E+02 0.0066 20.8 7.9 30 54-83 57-90 (300)
425 PRK07313 phosphopantothenoylcy 25.2 2.5E+02 0.0054 19.8 5.7 35 71-105 108-147 (182)
426 COG3848 Phosphohistidine swive 25.2 55 0.0012 21.2 1.6 43 38-80 34-80 (111)
427 PRK00536 speE spermidine synth 25.0 2.3E+02 0.0051 21.4 5.3 33 12-44 70-102 (262)
428 PF00308 Bac_DnaA: Bacterial d 24.9 2.7E+02 0.0059 20.1 8.5 76 48-124 91-179 (219)
429 cd02165 NMNAT Nicotinamide/nic 24.9 1.1E+02 0.0024 21.6 3.4 16 48-63 115-131 (192)
430 COG1057 NadD Nicotinic acid mo 24.8 1.7E+02 0.0037 21.1 4.3 50 2-64 87-138 (197)
431 PRK14193 bifunctional 5,10-met 24.7 2.4E+02 0.0052 21.7 5.3 58 5-63 145-212 (284)
432 PRK05749 3-deoxy-D-manno-octul 24.5 3.6E+02 0.0078 21.4 8.0 75 4-80 69-153 (425)
433 PRK13152 hisH imidazole glycer 24.4 2.6E+02 0.0057 19.8 6.1 60 18-82 4-81 (201)
434 PF13528 Glyco_trans_1_3: Glyc 24.3 1.1E+02 0.0025 22.9 3.6 29 54-82 94-122 (318)
435 COG0289 DapB Dihydrodipicolina 24.3 3.3E+02 0.0071 20.8 7.6 74 48-125 63-145 (266)
436 PRK13337 putative lipid kinase 24.2 3.2E+02 0.007 20.7 6.1 30 54-83 57-92 (304)
437 PF02602 HEM4: Uroporphyrinoge 24.0 2.7E+02 0.0059 19.8 8.6 97 12-117 115-230 (231)
438 PRK14168 bifunctional 5,10-met 23.9 2.2E+02 0.0049 22.0 5.0 26 38-63 191-217 (297)
439 PF04016 DUF364: Domain of unk 23.9 2.4E+02 0.0052 19.1 5.2 34 47-80 55-94 (147)
440 PLN02968 Probable N-acetyl-gam 23.7 2.1E+02 0.0047 22.9 5.1 29 52-80 102-133 (381)
441 PRK14178 bifunctional 5,10-met 23.6 2.2E+02 0.0049 21.8 5.0 58 5-63 139-204 (279)
442 PF04312 DUF460: Protein of un 23.5 2.5E+02 0.0054 19.1 5.9 55 65-123 67-122 (138)
443 KOG2501 Thioredoxin, nucleored 23.2 2.7E+02 0.0058 19.4 5.7 36 47-82 82-123 (157)
444 cd01408 SIRT1 SIRT1: Eukaryoti 23.2 2.2E+02 0.0049 20.9 4.8 47 36-82 151-209 (235)
445 PRK14096 pgi glucose-6-phospha 23.1 3E+02 0.0066 23.2 6.0 27 37-63 143-179 (528)
446 cd01410 SIRT7 SIRT7: Eukaryoti 23.1 2.6E+02 0.0056 20.2 5.0 47 36-82 131-190 (206)
447 PF00117 GATase: Glutamine ami 22.8 2.5E+02 0.0054 19.4 4.9 67 21-92 5-85 (192)
448 PRK14167 bifunctional 5,10-met 22.8 3.7E+02 0.008 20.8 7.1 59 4-63 143-213 (297)
449 cd08184 Fe-ADH3 Iron-containin 22.7 3.8E+02 0.0083 21.1 8.6 15 54-69 81-95 (347)
450 PRK06965 acetolactate synthase 22.6 4.8E+02 0.01 22.1 8.5 76 4-81 26-117 (587)
451 PRK14053 methyltransferase; Pr 22.6 95 0.0021 22.3 2.6 14 11-24 61-74 (194)
452 PRK05752 uroporphyrinogen-III 22.2 3.3E+02 0.0071 20.1 11.1 102 13-123 129-250 (255)
453 PRK11914 diacylglycerol kinase 22.1 1.1E+02 0.0025 23.2 3.2 30 54-83 64-97 (306)
454 PRK13059 putative lipid kinase 22.0 96 0.0021 23.6 2.8 30 54-83 56-91 (295)
455 PF06792 UPF0261: Uncharacteri 22.0 4.4E+02 0.0095 21.5 7.8 75 3-82 201-278 (403)
456 cd01486 Apg7 Apg7 is an E1-lik 22.0 3.9E+02 0.0085 20.9 6.3 34 47-80 101-139 (307)
457 COG3265 GntK Gluconate kinase 21.9 1.2E+02 0.0027 21.1 2.9 8 36-43 89-96 (161)
458 PF12627 PolyA_pol_RNAbd: Prob 21.8 1.6E+02 0.0035 16.3 3.3 21 110-130 21-41 (64)
459 PF07085 DRTGG: DRTGG domain; 21.7 2.1E+02 0.0046 17.8 5.4 68 38-108 23-92 (105)
460 PRK05690 molybdopterin biosynt 21.7 3.4E+02 0.0074 20.1 6.1 45 36-80 99-153 (245)
461 COG4630 XdhA Xanthine dehydrog 21.7 4.1E+02 0.009 21.7 6.1 76 2-79 212-290 (493)
462 PRK00964 tetrahydromethanopter 21.7 98 0.0021 22.9 2.6 24 11-34 68-96 (225)
463 PF14053 DUF4248: Domain of un 21.6 1.9E+02 0.0041 17.0 4.0 47 112-158 20-67 (69)
464 PRK13057 putative lipid kinase 21.6 1.3E+02 0.0028 22.7 3.4 31 53-83 49-83 (287)
465 KOG0925 mRNA splicing factor A 21.5 1.6E+02 0.0034 24.9 3.9 34 2-35 179-212 (699)
466 cd08189 Fe-ADH5 Iron-containin 21.4 4.1E+02 0.009 20.9 9.3 61 4-64 16-93 (374)
467 PRK10792 bifunctional 5,10-met 21.4 3.9E+02 0.0084 20.6 7.3 58 5-63 146-211 (285)
468 KOG1494 NAD-dependent malate d 21.3 1.2E+02 0.0025 23.7 3.0 27 37-63 77-105 (345)
469 PRK11269 glyoxylate carboligas 21.2 5.1E+02 0.011 21.9 11.7 75 4-80 9-100 (591)
470 PRK08335 translation initiatio 21.0 3.9E+02 0.0084 20.4 9.2 69 11-80 132-217 (275)
471 PRK06112 acetolactate synthase 21.0 1.1E+02 0.0024 25.7 3.1 44 37-80 48-106 (578)
472 COG1432 Uncharacterized conser 20.9 3.1E+02 0.0067 19.3 5.6 46 16-61 113-160 (181)
473 PLN02980 2-oxoglutarate decarb 20.8 6.4E+02 0.014 24.7 8.2 44 37-80 338-396 (1655)
474 PF04577 DUF563: Protein of un 20.7 1.8E+02 0.0039 20.2 3.9 47 25-73 120-170 (206)
475 TIGR01111 mtrA N5-methyltetrah 20.6 1.1E+02 0.0023 22.7 2.6 24 11-34 68-96 (238)
476 smart00046 DAGKc Diacylglycero 20.5 1.3E+02 0.0029 19.5 2.9 30 54-83 49-87 (124)
477 PRK08322 acetolactate synthase 20.5 5E+02 0.011 21.6 11.2 75 3-80 5-95 (547)
478 COG5039 Exopolysaccharide bios 20.5 4.3E+02 0.0093 20.8 7.4 37 47-84 261-297 (339)
479 COG4558 ChuT ABC-type hemin tr 20.4 2.9E+02 0.0063 21.4 4.9 30 54-83 99-131 (300)
480 COG0416 PlsX Fatty acid/phosph 20.4 1.1E+02 0.0023 24.2 2.7 58 4-63 165-231 (338)
481 TIGR02113 coaC_strep phosphopa 20.4 3.2E+02 0.0069 19.2 5.3 33 73-105 111-146 (177)
482 PF10653 Phage-A118_gp45: Prot 20.2 63 0.0014 17.9 1.0 32 119-156 21-52 (62)
483 PRK06546 pyruvate dehydrogenas 20.0 5.4E+02 0.012 21.7 8.4 45 37-81 40-99 (578)
484 PRK06456 acetolactate synthase 20.0 5.3E+02 0.011 21.6 8.7 43 38-80 43-100 (572)
No 1
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=3.9e-24 Score=165.54 Aligned_cols=154 Identities=36% Similarity=0.500 Sum_probs=136.4
Q ss_pred HHHHHhhcC-CeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 5 YYQMLMEKH-NLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
+.+++..-. ++++++++|++..+++...+....-+.+.+|.++|..+|+.||++||++|++|+.|++++|+|+|++|.+
T Consensus 202 v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p 281 (357)
T COG0707 202 VPEALAKLANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYP 281 (357)
T ss_pred HHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCC
Confidence 334444444 6999999999877776665543212899999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 84 NVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 84 ~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
+..++||..|++++++.|.+.++...+++++.+.+.+.+++++|+..+.|+++++.+...++.+++++.++....
T Consensus 282 ~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~~ 356 (357)
T COG0707 282 PGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLALAK 356 (357)
T ss_pred CCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 877889999999999999999999999999999999999999999999999999999999999999999887653
No 2
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.6e-20 Score=145.64 Aligned_cols=142 Identities=33% Similarity=0.495 Sum_probs=123.2
Q ss_pred eEEEEcCcccHHHHHHHhhcCC-CeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHH
Q 031484 16 FIIWQTGVEAFNEMESLVRNHP-RLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNA 94 (159)
Q Consensus 16 ~~~~~~G~~~~~~l~~~~~~~~-~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~ 94 (159)
.+++++|.+..+++.+.++ .+ ++.+.+|++++.++|+.||++|+++|++|++|+|++|+|+|++|.++...++|..++
T Consensus 214 ~~~~~~G~g~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~ 292 (357)
T PRK00726 214 QVIHQTGKGDLEEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANA 292 (357)
T ss_pred EEEEEcCCCcHHHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHH
Confidence 4557788876666655443 22 489999998999999999999999999999999999999999987544446788888
Q ss_pred HHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 95 SLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
+.+.+.|.|+.++.++++++.+++++.++++|++.+++|++++++++...+.+++++.+.++++
T Consensus 293 ~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 293 RALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 9999999999998887789999999999999999999999999999999999999999998875
No 3
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.87 E-value=5.5e-23 Score=144.12 Aligned_cols=125 Identities=39% Similarity=0.556 Sum_probs=99.7
Q ss_pred CCeeEEEEcCcccHHHHHHHhhcC-CCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHH
Q 031484 13 HNLFIIWQTGVEAFNEMESLVRNH-PRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQF 91 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~ 91 (159)
+++++++++|+..+++....+... .++.+++|.++|.++|+.||++||++|++|++|++++|+|+|++|.++..+++|.
T Consensus 30 ~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~ 109 (167)
T PF04101_consen 30 KNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQE 109 (167)
T ss_dssp HHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHH
T ss_pred CCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHH
Confidence 568999999998655544334443 6899999999999999999999999999999999999999999999866667999
Q ss_pred HHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHH
Q 031484 92 KNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERA 137 (159)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 137 (159)
.|+..+.+.|.++.+...+.+++.|.+.+.+++.++.++..+.++.
T Consensus 110 ~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 110 ENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp HHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred HHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999988777668899999999999998876665554
No 4
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.87 E-value=9.9e-21 Score=148.92 Aligned_cols=145 Identities=17% Similarity=0.292 Sum_probs=121.7
Q ss_pred HHHHhhcCCeeEEEEcCccc--HHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEe-cC
Q 031484 6 YQMLMEKHNLFIIWQTGVEA--FNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILI-PS 82 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~~--~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~-p~ 82 (159)
+.+++..+++++++++|++. ++++++.+...+++.++||+++++++|+.||++|+.+|+.|++||+++|+|+|++ |.
T Consensus 223 ~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~ 302 (391)
T PRK13608 223 TDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIPMIFLNPA 302 (391)
T ss_pred HHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCCEEECCCC
Confidence 33445567899988888763 4566554444468999999999999999999999999999999999999999998 44
Q ss_pred CCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 83 PNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 83 ~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
+ +++..|+.++.+.|.|+... + ++++.+.+.++++|++.+++|+++++++...++++++++.+.+++.
T Consensus 303 p----gqe~~N~~~~~~~G~g~~~~--~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 303 P----GQELENALYFEEKGFGKIAD--T--PEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred C----CcchhHHHHHHhCCcEEEeC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 3 45677999999999997754 2 7899999999999999999999999999989999999999988753
No 5
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.86 E-value=8.4e-20 Score=141.87 Aligned_cols=146 Identities=22% Similarity=0.269 Sum_probs=118.1
Q ss_pred hHHHHHhhc-CCeeEEEEcCcccHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEec
Q 031484 4 LYYQMLMEK-HNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
.+.+++... .+++++++||+.+.++.... .+++.+.+|+ ++|+++|+.||++||++|++|++|++++|+|+|++|
T Consensus 203 ~~~~~l~~l~~~~~vv~~~G~~~~~~~~~~---~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP 279 (352)
T PRK12446 203 TVREALPELLLKYQIVHLCGKGNLDDSLQN---KEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIP 279 (352)
T ss_pred HHHHHHHhhccCcEEEEEeCCchHHHHHhh---cCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEc
Confidence 344444442 46899999998755443221 2356777998 689999999999999999999999999999999999
Q ss_pred CCCCC-CchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 82 SPNVA-EGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 82 ~~~~~-~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
+++.+ +++|..|++++.+.|.+..+..++++++.+.+.+.++++|++.++ +++.++...++++++++.|.+
T Consensus 280 ~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~---~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 280 LSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK---TALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred CCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH---HHHHHcCCCCHHHHHHHHHHh
Confidence 86433 468999999999999999998888889999999999999987654 456667778899988887754
No 6
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=1.3e-19 Score=139.79 Aligned_cols=139 Identities=37% Similarity=0.526 Sum_probs=119.4
Q ss_pred CCeeEEEEcCcccHHHHHHHhhc-CCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHH
Q 031484 13 HNLFIIWQTGVEAFNEMESLVRN-HPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQF 91 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~~~~~-~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~ 91 (159)
+++++++++|++..+++++.+.. .+++.+.+|..++.++|+.||++++++|++|++|||++|+|+|++|.++..+++|.
T Consensus 210 ~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 210 KRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred cCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 56777778888766777766543 35899999999999999999999999999999999999999999987643456777
Q ss_pred HHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 031484 92 KNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQ 151 (159)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (159)
.+++.+.+.|.|+.++.++.+++++.+++.++++|++.++.|+.+++++...++.+++++
T Consensus 290 ~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 290 ANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 788889999999999876445899999999999999999999999999998889999876
No 7
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.85 E-value=1e-19 Score=142.78 Aligned_cols=139 Identities=25% Similarity=0.279 Sum_probs=116.3
Q ss_pred cCCeeEEEEcCccc--HHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCch
Q 031484 12 KHNLFIIWQTGVEA--FNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGH 89 (159)
Q Consensus 12 ~~~~~~~~~~G~~~--~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~ 89 (159)
.+++++++++|++. ++++++. ....+++++||+++++++|+.||++|+.+|++|++|||++|+|+|+++.. .++
T Consensus 239 ~~~~~~~vi~G~~~~~~~~L~~~-~~~~~v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~---pgq 314 (382)
T PLN02605 239 KPIGQVVVICGRNKKLQSKLESR-DWKIPVKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYI---PGQ 314 (382)
T ss_pred CCCceEEEEECCCHHHHHHHHhh-cccCCeEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCC---Ccc
Confidence 46778878888762 3455443 22347999999999999999999999999999999999999999998643 256
Q ss_pred HHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 90 QFKNASLMAKLADSRIITEDELDSITLETTIEEILGN-EALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 90 q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
+..|+.++.+.|.|+.+ ++ ++.+.+++.+++++ ++.+++|++++++....++++++++.+.+++.
T Consensus 315 e~gn~~~i~~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 315 EEGNVPYVVDNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHELVR 380 (382)
T ss_pred chhhHHHHHhCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhh
Confidence 66788889989998765 33 89999999999988 99999999999999999999999999988754
No 8
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.83 E-value=5.4e-19 Score=138.30 Aligned_cols=141 Identities=21% Similarity=0.333 Sum_probs=116.4
Q ss_pred hhcCCeeEEEEcCcc--cHHHHHHHhhcC-CCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEe-cCCCC
Q 031484 10 MEKHNLFIIWQTGVE--AFNEMESLVRNH-PRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILI-PSPNV 85 (159)
Q Consensus 10 ~~~~~~~~~~~~G~~--~~~~l~~~~~~~-~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~-p~~~~ 85 (159)
...+++++++++|++ ..+++++..+.. .+++++||++++.++|+.||++|+.+|+.|++||+++|+|+|++ |.+
T Consensus 226 ~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~-- 303 (380)
T PRK13609 226 MSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVILYKPVP-- 303 (380)
T ss_pred hhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEECCCCC--
Confidence 345789998888864 356666655443 48999999999999999999999999999999999999999985 343
Q ss_pred CCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 86 AEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 86 ~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
+++..|+..+.+.|.++.. .+ ++.+.+.+.++++|++.+++|+++++++...++++++++.+++++.
T Consensus 304 --g~~~~n~~~~~~~G~~~~~--~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 304 --GQEKENAMYFERKGAAVVI--RD--DEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred --CcchHHHHHHHhCCcEEEE--CC--HHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 4456677788888887654 33 7899999999999999999999999999888899999999988753
No 9
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.82 E-value=1.6e-18 Score=133.75 Aligned_cols=140 Identities=36% Similarity=0.502 Sum_probs=112.5
Q ss_pred CCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc-cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHH
Q 031484 13 HNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH-SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQF 91 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~-~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~ 91 (159)
.++++++++|++..+++++.+...+-..+..|.. ++.++|+.||++|+++|++|++|+|++|+|+|+++.++.. ++|.
T Consensus 208 ~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~-~~~~ 286 (348)
T TIGR01133 208 KGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFIDENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAA-DDQY 286 (348)
T ss_pred cCcEEEEECCcchHHHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCc-cchh
Confidence 3577777888776667766554332112222333 7999999999999999988999999999999999876433 3467
Q ss_pred HHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 031484 92 KNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHI 153 (159)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (159)
.+.+.+.+.+.|+.++.++.+++++++++.++++|++.+++|+++++++...++.+++++.|
T Consensus 287 ~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (348)
T TIGR01133 287 YNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIAELI 348 (348)
T ss_pred hHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCccHHHHHHhhC
Confidence 77888999999999888776799999999999999999999999999999999999988753
No 10
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.76 E-value=4e-17 Score=128.38 Aligned_cols=138 Identities=15% Similarity=0.250 Sum_probs=115.8
Q ss_pred CCeeEEEEcCccc-HHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHH
Q 031484 13 HNLFIIWQTGVEA-FNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQF 91 (159)
Q Consensus 13 ~~~~~~~~~G~~~-~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~ 91 (159)
.++++++.+|+.. .+.+.. ..+++.+.+|++. .++|..||++|+++|++|++|++++|+|+|++|.. .+|.
T Consensus 253 ~~~~~i~~~g~~~~~~~~~~---~~~~v~~~~~~p~-~~ll~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~----~dq~ 324 (392)
T TIGR01426 253 LDWHVVLSVGRGVDPADLGE---LPPNVEVRQWVPQ-LEILKKADAFITHGGMNSTMEALFNGVPMVAVPQG----ADQP 324 (392)
T ss_pred CCCeEEEEECCCCChhHhcc---CCCCeEEeCCCCH-HHHHhhCCEEEECCCchHHHHHHHhCCCEEecCCc----ccHH
Confidence 3567878888653 333322 2468999999985 58999999999999999999999999999999975 5788
Q ss_pred HHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 92 KNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
.|++.+.+.|.|..+...+++++++.+++.++++|+++++.+.+-...+...++.+++++.|++++.
T Consensus 325 ~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 325 MTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 8999999999999888777889999999999999999888887777777777789999999988764
No 11
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.76 E-value=8.5e-17 Score=126.84 Aligned_cols=147 Identities=19% Similarity=0.262 Sum_probs=114.5
Q ss_pred hhhHHHHHhhcCCeeEEEEc-CcccHHHHHHHhhcC-----------------CCeEEecccccHHHHHhhCceEEecCC
Q 031484 2 LNLYYQMLMEKHNLFIIWQT-GVEAFNEMESLVRNH-----------------PRLLLTPFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-G~~~~~~l~~~~~~~-----------------~~v~~~~~~~~~~~~l~~ad~~i~~~G 63 (159)
++++..+.+. ++++|++++ |..+.+.+++.+... +++.+..|.+++.++|+.||++|++||
T Consensus 227 l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rSG 305 (396)
T TIGR03492 227 LRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAG 305 (396)
T ss_pred HHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECcC
Confidence 3455555444 789999988 555666666554321 236777788889999999999999999
Q ss_pred hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHc----CceeeeccCCCChhHHHHHHHHHhcCHHHHHHHH-HHHH
Q 031484 64 AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKL----ADSRIITEDELDSITLETTIEEILGNEALMAEMS-ERAL 138 (159)
Q Consensus 64 ~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~----~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~-~~~~ 138 (159)
+.| .|++++|+|+|++|.+ ++|. |+..+++. |.++.+...+ ++.+.+.+.++++|++.+++|. +...
T Consensus 306 t~T-~E~a~lg~P~Ilip~~----~~q~-na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~~~~~~~ 377 (396)
T TIGR03492 306 TAT-EQAVGLGKPVIQLPGK----GPQF-TYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERCRRNGQE 377 (396)
T ss_pred HHH-HHHHHhCCCEEEEeCC----CCHH-HHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 988 8999999999999975 6776 88777663 6666665544 6899999999999999998888 4556
Q ss_pred hcCCCChHHHHHHHHHHhh
Q 031484 139 KAAKPGASADIAQHILSLV 157 (159)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~~ 157 (159)
+++..++.+++++.|.+++
T Consensus 378 ~lg~~~a~~~ia~~i~~~~ 396 (396)
T TIGR03492 378 RMGPPGASARIAESILKQL 396 (396)
T ss_pred hcCCCCHHHHHHHHHHHhC
Confidence 7778899999999887753
No 12
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.76 E-value=3.5e-17 Score=129.28 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=122.0
Q ss_pred hHHHHHhh--cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEec
Q 031484 4 LYYQMLME--KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
.+..+++. ..+.++++.+|.. ...+. ..+.|+.+.+|.|. .+++..||++|||+|.+|++|++.+|+|+|++|
T Consensus 253 l~~~~~~a~~~l~~~vi~~~~~~-~~~~~---~~p~n~~v~~~~p~-~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~P 327 (406)
T COG1819 253 LLAIVLEALADLDVRVIVSLGGA-RDTLV---NVPDNVIVADYVPQ-LELLPRADAVIHHGGAGTTSEALYAGVPLVVIP 327 (406)
T ss_pred HHHHHHHHHhcCCcEEEEecccc-ccccc---cCCCceEEecCCCH-HHHhhhcCEEEecCCcchHHHHHHcCCCEEEec
Confidence 44455554 3567787777762 22222 12459999999985 589999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 82 SPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 82 ~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
.. .+|..|+..+++.|+|..++.+.++++.+.+++++++.|+.+++...+.++......+...+++.|.++..
T Consensus 328 ~~----~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 328 DG----ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred CC----cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHh
Confidence 86 68899999999999999999888889999999999999999999888888888888888889999988653
No 13
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.74 E-value=5e-17 Score=127.90 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=109.2
Q ss_pred CeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHH
Q 031484 14 NLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKN 93 (159)
Q Consensus 14 ~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~ 93 (159)
++++++++|...... ....+|+.+.+|++ +..+|..||++|+|+|.+|++|++++|+|+|++|.. .+|..|
T Consensus 269 ~~~~i~~~g~~~~~~----~~~~~~v~~~~~~p-~~~ll~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~----~dQ~~~ 339 (401)
T cd03784 269 GQRAILSLGWGGLGA----EDLPDNVRVVDFVP-HDWLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFF----GDQPFW 339 (401)
T ss_pred CCeEEEEccCccccc----cCCCCceEEeCCCC-HHHHhhhhheeeecCCchhHHHHHHcCCCEEeeCCC----CCcHHH
Confidence 667778888653221 11246899999987 678999999999999999999999999999999986 569999
Q ss_pred HHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 94 ASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
++.+++.|.|..+...+++++.+.+++.++++++ .++++.+...++...++.+++++.|++
T Consensus 340 a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 340 AARVAELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAALLRRIREEDGVPSAADVIER 400 (401)
T ss_pred HHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHHHHHHHhccCHHHHHHHHhh
Confidence 9999999999988776678999999999999854 566677777777777889999888865
No 14
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.74 E-value=1.4e-16 Score=126.00 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=118.3
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecC---------C-hH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRA---------G-AM 65 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~---------G-~~ 65 (159)
+++++..+.+..+++++++++++...+++++.++. .++|.++|+.+ ++.++|+.||+++..+ | +.
T Consensus 240 ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~ 319 (406)
T PRK15427 240 AIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPV 319 (406)
T ss_pred HHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccH
Confidence 35677777777889999877655556667666543 35899999985 6899999999998643 3 57
Q ss_pred HHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc-CHHHHHHHHHHHHhcC-CC
Q 031484 66 TCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG-NEALMAEMSERALKAA-KP 143 (159)
Q Consensus 66 t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~-~~~~~~~~~~~~~~~~-~~ 143 (159)
+++|||++|+|+|+++.++ ..+.+.+...|+.++.+| ++++++++.++++ |++.+++|++++++.. ..
T Consensus 320 ~llEAma~G~PVI~t~~~g--------~~E~v~~~~~G~lv~~~d--~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~ 389 (406)
T PRK15427 320 ALMEAMAVGIPVVSTLHSG--------IPELVEADKSGWLVPEND--AQALAQRLAAFSQLDTDELAPVVKRAREKVETD 389 (406)
T ss_pred HHHHHHhCCCCEEEeCCCC--------chhhhcCCCceEEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999987642 234566667899998777 8999999999999 9999999999998876 55
Q ss_pred ChHHHHHHHHHHhhh
Q 031484 144 GASADIAQHILSLVE 158 (159)
Q Consensus 144 ~~~~~~~~~i~~~~~ 158 (159)
..++.+++.+.+++.
T Consensus 390 f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 390 FNQQVINRELASLLQ 404 (406)
T ss_pred cCHHHHHHHHHHHHh
Confidence 699999999888765
No 15
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.73 E-value=5.3e-17 Score=126.89 Aligned_cols=153 Identities=18% Similarity=0.119 Sum_probs=104.7
Q ss_pred hhhHHHHHhhcCCeeEEEEcCc-ccHHHHHHHhhcC-C-CeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGV-EAFNEMESLVRNH-P-RLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~-~~~~~l~~~~~~~-~-~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
++++..+.+.+|++++++++|. ...+++++.+... + ++.+. .+++..+|+.||++|+.||.+++ |++++|+|+|
T Consensus 208 ~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl~v~~sG~~~l-Ea~a~G~PvI 284 (380)
T PRK00025 208 LKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL--DGQKREAMAAADAALAASGTVTL-ELALLKVPMV 284 (380)
T ss_pred HHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE--cccHHHHHHhCCEEEECccHHHH-HHHHhCCCEE
Confidence 3556666667789999888774 3456666655432 1 34443 35799999999999999998775 9999999999
Q ss_pred EecCC----CCCCchHHHH-----HHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHH----HhcCCCCh
Q 031484 79 LIPSP----NVAEGHQFKN-----ASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERA----LKAAKPGA 145 (159)
Q Consensus 79 ~~p~~----~~~~~~q~~~-----~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~----~~~~~~~~ 145 (159)
++|.. +..+++|..+ ++.+.+.+.+..+...+.+++.+++.+.++++|++.+++|++++ ... ..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a 363 (380)
T PRK00025 285 VGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGA 363 (380)
T ss_pred EEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCH
Confidence 99543 1111122111 12222222222333445568999999999999999999999986 333 5568
Q ss_pred HHHHHHHHHHhhh
Q 031484 146 SADIAQHILSLVE 158 (159)
Q Consensus 146 ~~~~~~~i~~~~~ 158 (159)
.+++++.|.+++.
T Consensus 364 ~~~~~~~i~~~~~ 376 (380)
T PRK00025 364 DERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHHhh
Confidence 8999999887653
No 16
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.72 E-value=2.9e-16 Score=127.13 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=111.1
Q ss_pred eeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHH--hhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHH
Q 031484 15 LFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAY--AAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFK 92 (159)
Q Consensus 15 ~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l--~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~ 92 (159)
.+++|..++...+ . ...+|+.+.+|.|+ .+++ ..++++|+|+|.+|+.||+.+|+|+|++|.. .+|..
T Consensus 329 ~~viw~~~~~~~~--~---~~p~Nv~i~~w~Pq-~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~----~DQ~~ 398 (507)
T PHA03392 329 YNVLWKYDGEVEA--I---NLPANVLTQKWFPQ-RAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMM----GDQFY 398 (507)
T ss_pred CeEEEEECCCcCc--c---cCCCceEEecCCCH-HHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCC----ccHHH
Confidence 4777766643221 0 12469999999985 6788 5699999999999999999999999999986 68899
Q ss_pred HHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHhhh
Q 031484 93 NASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKP--GASADIAQHILSLVE 158 (159)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 158 (159)
|+..+++.|+|+.+...+++++++.+++.+++.||++++.+.+-++.+... .+.++++..++.+++
T Consensus 399 Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r 466 (507)
T PHA03392 399 NTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIR 466 (507)
T ss_pred HHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999998888899999999999999999998888877777643 378888888876653
No 17
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.70 E-value=8.7e-16 Score=123.37 Aligned_cols=142 Identities=13% Similarity=0.184 Sum_probs=114.1
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecCC----hHHHHHHHHhCCc
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAG----AMTCYEILATGKP 76 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~P 76 (159)
+.+.++++..+++++++++++...++++++++. .+|.++|+++ ++..+|+.||+++..+. +.+++|||++|+|
T Consensus 279 ~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~-~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~P 357 (465)
T PLN02871 279 DFLKRVMERLPGARLAFVGDGPYREELEKMFAG-TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVP 357 (465)
T ss_pred HHHHHHHHhCCCcEEEEEeCChHHHHHHHHhcc-CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCC
Confidence 456667777789999876554556777776543 5799999994 79999999999997653 5779999999999
Q ss_pred EEEecCCCCCCchHHHHHHHHHH---cCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 031484 77 SILIPSPNVAEGHQFKNASLMAK---LADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHI 153 (159)
Q Consensus 77 ~I~~p~~~~~~~~q~~~~~~~~~---~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (159)
+|+.+..+ ..+.+.+ .+.|++++.+| ++++++++.++++|++.+++|++++++......++.+++.+
T Consensus 358 VI~s~~gg--------~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l 427 (465)
T PLN02871 358 VVAARAGG--------IPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKL 427 (465)
T ss_pred EEEcCCCC--------cHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99986542 2334555 67899988776 89999999999999999999999998877778999998888
Q ss_pred HH
Q 031484 154 LS 155 (159)
Q Consensus 154 ~~ 155 (159)
++
T Consensus 428 ~~ 429 (465)
T PLN02871 428 RN 429 (465)
T ss_pred HH
Confidence 76
No 18
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.69 E-value=1.7e-16 Score=124.80 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=109.2
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc-cHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE-AFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
++++..+.+.+|++++++..+.. ..+.+++.... ...+.++ ..++..+|+.||++|+.||+.|+ |++++|+|+
T Consensus 213 l~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~ 289 (385)
T TIGR00215 213 LKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLI--DGDARKAMFAADAALLASGTAAL-EAALIKTPM 289 (385)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEE--CchHHHHHHhCCEEeecCCHHHH-HHHHcCCCE
Confidence 34556666677888886654443 23333332221 1234443 34678999999999999999886 999999999
Q ss_pred EEe----cCCCCCCch-----HHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCH----HHHHHHHHHHH----hc
Q 031484 78 ILI----PSPNVAEGH-----QFKNASLMAKLADSRIITEDELDSITLETTIEEILGNE----ALMAEMSERAL----KA 140 (159)
Q Consensus 78 I~~----p~~~~~~~~-----q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~----~~~~~~~~~~~----~~ 140 (159)
|++ |.+++++.+ |..+++.+.+.+....+-+++.+++.+.+.+.++++|+ ++++++.+... .+
T Consensus 290 Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 290 VVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred EEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 999 776555444 55566667777777777778889999999999999999 88877777753 44
Q ss_pred CCCChHHHHHHHHHH
Q 031484 141 AKPGASADIAQHILS 155 (159)
Q Consensus 141 ~~~~~~~~~~~~i~~ 155 (159)
+..++.+++++.|.+
T Consensus 370 ~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 370 YCNADSERAAQAVLE 384 (385)
T ss_pred cCCCHHHHHHHHHhh
Confidence 556678899988765
No 19
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.69 E-value=1.4e-15 Score=118.40 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=114.8
Q ss_pred ChhhHHHHHhhcC----CeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC----ChHHHHH
Q 031484 1 MLNLYYQMLMEKH----NLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA----GAMTCYE 69 (159)
Q Consensus 1 ~~~~~~~~~~~~~----~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~----G~~t~~E 69 (159)
|++++.++....+ ++++++++++...+++++.++. ..++.+.|+.+++..+|+.||+++..+ .+.+++|
T Consensus 212 li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lE 291 (374)
T TIGR03088 212 LVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILE 291 (374)
T ss_pred HHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHH
Confidence 3567777777655 6788766544445666655443 246888898889999999999999654 2788999
Q ss_pred HHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHH
Q 031484 70 ILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGASAD 148 (159)
Q Consensus 70 al~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~ 148 (159)
||++|+|+|+++.++ ..+.+.+...|+.++.++ ++++++++.++++++..++.+++++++.. ...+++.
T Consensus 292 Ama~G~Pvv~s~~~g--------~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 292 AMASGLPVIATAVGG--------NPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHcCCCEEEcCCCC--------cHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999987642 234555666788888766 89999999999999999999999988876 5679999
Q ss_pred HHHHHHHhhh
Q 031484 149 IAQHILSLVE 158 (159)
Q Consensus 149 ~~~~i~~~~~ 158 (159)
+++.+.++..
T Consensus 362 ~~~~~~~~y~ 371 (374)
T TIGR03088 362 MVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHH
Confidence 9988887653
No 20
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.69 E-value=9.6e-16 Score=118.53 Aligned_cols=145 Identities=11% Similarity=0.130 Sum_probs=113.3
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecC----------ChH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRA----------GAM 65 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~----------G~~ 65 (159)
+++++..+.+.++++++++++++...+++++.++. ..++.++|+.+ ++..+|+.||+++..+ .++
T Consensus 206 li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~ 285 (367)
T cd05844 206 LLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPV 285 (367)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCch
Confidence 35677777777889999776544445556555443 46899999985 6999999999988643 268
Q ss_pred HHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCC
Q 031484 66 TCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPG 144 (159)
Q Consensus 66 t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~ 144 (159)
+++|||++|+|+|+.+..+ ..+.+.+.+.|++++.++ ++++++++.+++++++.+++++.++++.. ...
T Consensus 286 ~~~EA~a~G~PvI~s~~~~--------~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~ 355 (367)
T cd05844 286 VLLEAQASGVPVVATRHGG--------IPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARMGAAGRRRVEERF 355 (367)
T ss_pred HHHHHHHcCCCEEEeCCCC--------chhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999987642 334566677888887766 89999999999999999999999988776 467
Q ss_pred hHHHHHHHHHH
Q 031484 145 ASADIAQHILS 155 (159)
Q Consensus 145 ~~~~~~~~i~~ 155 (159)
+++..++.+.+
T Consensus 356 s~~~~~~~l~~ 366 (367)
T cd05844 356 DLRRQTAKLEA 366 (367)
T ss_pred CHHHHHHHHhc
Confidence 89888888765
No 21
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.68 E-value=1.5e-15 Score=114.92 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=110.3
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhh---cCCCeEEecccccHHHHHhhCceEEecCC----hHHHHHHHHhC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVR---NHPRLLLTPFLHSMDLAYAAADLIVSRAG----AMTCYEILATG 74 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~---~~~~v~~~~~~~~~~~~l~~ad~~i~~~G----~~t~~Eal~~g 74 (159)
++++..+.+.+++++++++++....+.+++.+. ..+++.+.++.+++.++|+.||+++..+. +.+++|||++|
T Consensus 197 ~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G 276 (348)
T cd03820 197 IEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFG 276 (348)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcC
Confidence 567777777788999977655444555544332 24588999998899999999999997652 67899999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcC-ceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLA-DSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHI 153 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~-~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (159)
+|+|+.+... . ...+.+.+ .|+.+...+ ++++++++.++++|++.+++|++++.......+++++++.+
T Consensus 277 ~Pvi~~~~~~---~-----~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
T cd03820 277 LPVISFDCPT---G-----PSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQW 346 (348)
T ss_pred CCEEEecCCC---c-----hHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 9999986531 1 12234444 888887766 89999999999999999999999988777778899888776
Q ss_pred H
Q 031484 154 L 154 (159)
Q Consensus 154 ~ 154 (159)
.
T Consensus 347 ~ 347 (348)
T cd03820 347 E 347 (348)
T ss_pred c
Confidence 4
No 22
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.67 E-value=1.5e-15 Score=122.90 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=96.3
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHh--hCceEEecCChHHHHHHHHhCCcEEEe
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYA--AADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~--~ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
+.+.+.+++.|. +|+|...+.....+ .+|+.+..|.|+ .++++ ..+++|||+|.+|+.||+++|+|+|++
T Consensus 296 ~~~~~~~~~~~~-~~iW~~~~~~~~~l------~~n~~~~~W~PQ-~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 296 KEIAEAFENLPQ-RFIWKYEGEPPENL------PKNVLIVKWLPQ-NDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGI 367 (500)
T ss_dssp HHHHHHHHCSTT-EEEEEETCSHGCHH------HTTEEEESS--H-HHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-
T ss_pred HHHHHHHhhCCC-cccccccccccccc------cceEEEeccccc-hhhhhcccceeeeeccccchhhhhhhccCCccCC
Confidence 345555566555 78787665322221 358999999997 58885 557899999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Q 031484 81 PSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKP--GASADIAQHILS 155 (159)
Q Consensus 81 p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~ 155 (159)
|.. ++|..|+..+++.|.|..+...+++.+++.+++.++++|+++++.+.+-...+.+. .+.++++..++-
T Consensus 368 P~~----~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~ 440 (500)
T PF00201_consen 368 PLF----GDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEY 440 (500)
T ss_dssp GCS----TTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT----------------
T ss_pred CCc----ccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 986 78999999999999999999889999999999999999999988777776655532 355666555543
No 23
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.67 E-value=3.4e-15 Score=114.24 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=110.9
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecCC----hHHHHHHHHhCC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAG----AMTCYEILATGK 75 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~ 75 (159)
++++..+..+ ++++++++++....+.++ ...+++.+.|+.+ ++.++|+.||+++..+. +++++|||++|+
T Consensus 216 i~~~~~l~~~-~~~~l~i~G~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~ 291 (364)
T cd03814 216 LDADLPLRRR-PPVRLVIVGDGPARARLE---ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGL 291 (364)
T ss_pred HHHHHHhhhc-CCceEEEEeCCchHHHHh---ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC
Confidence 4555665555 788887655444444443 2356899999864 79999999999997653 688999999999
Q ss_pred cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 76 PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 76 P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
|+|+.+.+. ..+.+.+.+.|+.+...+ .+++++.+.+++.|++.++++.+++.......+++++++.+.+
T Consensus 292 PvI~~~~~~--------~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (364)
T cd03814 292 PVVAPDAGG--------PADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLE 361 (364)
T ss_pred CEEEcCCCC--------chhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 999987652 234556668888887766 7889999999999999999999999888877899999999887
Q ss_pred hh
Q 031484 156 LV 157 (159)
Q Consensus 156 ~~ 157 (159)
++
T Consensus 362 ~~ 363 (364)
T cd03814 362 AY 363 (364)
T ss_pred hh
Confidence 65
No 24
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.66 E-value=4.7e-15 Score=114.81 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=112.9
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC----ChHHHHHHHHhC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA----GAMTCYEILATG 74 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~----G~~t~~Eal~~g 74 (159)
++++..+... .++++++++.....+.+++.++. .+++.+.|+.+++.++|+.||+++..+ .+.+++|||++|
T Consensus 216 i~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g 294 (371)
T cd04962 216 IRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACG 294 (371)
T ss_pred HHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC
Confidence 4556555443 56788766444455555555432 357999999999999999999999654 367899999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKA-AKPGASADIAQHI 153 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 153 (159)
+|+|+++.++ ..+.+.+...|+.++.++ .+++++++.++++++..++.|++++++. ....+++.+++.+
T Consensus 295 ~PvI~s~~~~--------~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 364 (371)
T cd04962 295 VPVVASNAGG--------IPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQY 364 (371)
T ss_pred CCEEEeCCCC--------chhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999987642 234556667888887766 8999999999999999999999999887 4677999999988
Q ss_pred HHhhh
Q 031484 154 LSLVE 158 (159)
Q Consensus 154 ~~~~~ 158 (159)
.++..
T Consensus 365 ~~~y~ 369 (371)
T cd04962 365 EALYR 369 (371)
T ss_pred HHHHH
Confidence 88764
No 25
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.66 E-value=3e-15 Score=117.82 Aligned_cols=144 Identities=12% Similarity=0.051 Sum_probs=109.4
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcc------------cHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecCC
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVE------------AFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRAG 63 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~------------~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~G 63 (159)
|++++..+.+.+|+++++++++.. ..+.+.+.+.. ..+|.++|+++ ++..+|+.||+++..+-
T Consensus 230 ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~ 309 (396)
T cd03818 230 FMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTY 309 (396)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCc
Confidence 357777787788999998877521 12233333321 46899999985 68899999999986442
Q ss_pred ----hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHh
Q 031484 64 ----AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALK 139 (159)
Q Consensus 64 ----~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~ 139 (159)
+.+++|||+||+|+|+++.++ ..+.+.+...|+.++.+| ++.+++++.++++|++.+++|++++++
T Consensus 310 ~e~~~~~llEAmA~G~PVIas~~~g--------~~e~i~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 310 PFVLSWSLLEAMACGCLVVGSDTAP--------VREVITDGENGLLVDFFD--PDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred ccccchHHHHHHHCCCCEEEcCCCC--------chhhcccCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 467899999999999986542 234455566788888776 899999999999999999999999988
Q ss_pred cCCC-ChHHHHHHHHH
Q 031484 140 AAKP-GASADIAQHIL 154 (159)
Q Consensus 140 ~~~~-~~~~~~~~~i~ 154 (159)
.... .+++.+++.++
T Consensus 380 ~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 380 TALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHhccHHHHHHHHh
Confidence 7754 68888776654
No 26
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.66 E-value=2e-15 Score=115.35 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=91.3
Q ss_pred HHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCC
Q 031484 6 YQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPN 84 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~ 84 (159)
.+.++..+++++++. |....+. ..+|+++.+|. +++.++|+.||++||++|.+|++|++++|+|+|++|.++
T Consensus 208 ~~~l~~~~~~~~~v~-g~~~~~~------~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~ 280 (318)
T PF13528_consen 208 IEALKALPDYQFIVF-GPNAADP------RPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPG 280 (318)
T ss_pred HHHHHhCCCCeEEEE-cCCcccc------cCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCC
Confidence 455666777787666 6552111 14699999998 799999999999999999999999999999999999864
Q ss_pred CCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHH
Q 031484 85 VAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEI 123 (159)
Q Consensus 85 ~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~l 123 (159)
..+|..|++.+.+.|.|..++.++++++.|.+.|+++
T Consensus 281 --~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 281 --QDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred --CchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 3689999999999999999988888899999988764
No 27
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.66 E-value=4.9e-15 Score=116.58 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=114.3
Q ss_pred ChhhHHHHHhhcCC--eeEEEEcCc-----ccHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecC----Ch
Q 031484 1 MLNLYYQMLMEKHN--LFIIWQTGV-----EAFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRA----GA 64 (159)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~G~-----~~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~ 64 (159)
|++++..+.+.+++ +++++++|. ...++++++++. ..+|.++|+.+ ++..+|+.||+++..+ .+
T Consensus 237 li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g 316 (405)
T TIGR03449 237 LLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFG 316 (405)
T ss_pred HHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcC
Confidence 46677777777776 888777653 224455555432 35899999984 7899999999998643 26
Q ss_pred HHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 031484 65 MTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPG 144 (159)
Q Consensus 65 ~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 144 (159)
.+++|||++|+|+|++..++ ..+.+.+...|+.++.+| ++.+++++.++++++..+++|++++++.....
T Consensus 317 ~~~lEAma~G~Pvi~~~~~~--------~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~f 386 (405)
T TIGR03449 317 LVAMEAQACGTPVVAARVGG--------LPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAAAVEHAAGF 386 (405)
T ss_pred hHHHHHHHcCCCEEEecCCC--------cHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 78999999999999987642 223455667788887766 89999999999999999999999988877778
Q ss_pred hHHHHHHHHHHhhh
Q 031484 145 ASADIAQHILSLVE 158 (159)
Q Consensus 145 ~~~~~~~~i~~~~~ 158 (159)
+++++++.+.++..
T Consensus 387 sw~~~~~~~~~~y~ 400 (405)
T TIGR03449 387 SWAATADGLLSSYR 400 (405)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887653
No 28
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.65 E-value=7.9e-15 Score=115.10 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=110.3
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCccc---------HHHHHHHhhc-CCCeEEecccc--cHHHHHhhCceEEecCC-----
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEA---------FNEMESLVRN-HPRLLLTPFLH--SMDLAYAAADLIVSRAG----- 63 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~---------~~~l~~~~~~-~~~v~~~~~~~--~~~~~l~~ad~~i~~~G----- 63 (159)
|++++..+.+.+|++++++++++.. .+.+++.+.. ..++.++|+.+ ++..+|+.||+++..+.
T Consensus 211 Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 211 LMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 4678888888889999987764321 1233333332 35789999985 79999999999996542
Q ss_pred hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeee-ccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Q 031484 64 AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRII-TEDELDSITLETTIEEILGNEALMAEMSERALKAA- 141 (159)
Q Consensus 64 ~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~-~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~- 141 (159)
+.+++|||++|+|+|+++..+ ..+.+.+...|+.+ +..+ ++++++++.++++|++. .+|++++++..
T Consensus 291 ~~~~lEAma~G~PVI~s~~gg--------~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~-~~~~~~ar~~~~ 359 (380)
T PRK15484 291 CMVAVEAMAAGKPVLASTKGG--------ITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL-TQIAEQAKDFVF 359 (380)
T ss_pred ccHHHHHHHcCCCEEEeCCCC--------cHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 578899999999999986542 23456666778744 4555 89999999999999986 67888887664
Q ss_pred CCChHHHHHHHHHHhhh
Q 031484 142 KPGASADIAQHILSLVE 158 (159)
Q Consensus 142 ~~~~~~~~~~~i~~~~~ 158 (159)
...+++.+++.+++++.
T Consensus 360 ~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 360 SKYSWEGVTQRFEEQIH 376 (380)
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 56799999988888764
No 29
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.64 E-value=8.2e-15 Score=111.23 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=109.4
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHH----HhhcCCCeEEecccccHHHHHhhCceEEecCC----hHHHHHHHHh
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMES----LVRNHPRLLLTPFLHSMDLAYAAADLIVSRAG----AMTCYEILAT 73 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~----~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G----~~t~~Eal~~ 73 (159)
++++..+.+.+++++++++++......... .....++|.+.|+.+++.++|+.||+++..+. +++++|||++
T Consensus 207 i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~ 286 (359)
T cd03808 207 LEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAM 286 (359)
T ss_pred HHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHc
Confidence 456666666678999977655443222221 12224689999998899999999999997653 6889999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHHHH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKA-AKPGASADIAQH 152 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 152 (159)
|+|+|+.+.+. ..+.+.+.+.|+.+..++ ++.+++++.+++.+++.++++++++++. ....+++.+++.
T Consensus 287 G~Pvi~s~~~~--------~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 356 (359)
T cd03808 287 GRPVIATDVPG--------CREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKK 356 (359)
T ss_pred CCCEEEecCCC--------chhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999987642 234566677888887766 8999999999999999999999998887 466788888877
Q ss_pred HH
Q 031484 153 IL 154 (159)
Q Consensus 153 i~ 154 (159)
++
T Consensus 357 ~~ 358 (359)
T cd03808 357 LL 358 (359)
T ss_pred hh
Confidence 64
No 30
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.64 E-value=1.3e-14 Score=115.17 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=107.3
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccH-HHHHHHhhcC----------------CCeEEecccccHHHHHhhCceEEe---
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAF-NEMESLVRNH----------------PRLLLTPFLHSMDLAYAAADLIVS--- 60 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~-~~l~~~~~~~----------------~~v~~~~~~~~~~~~l~~ad~~i~--- 60 (159)
|++++..+.+.+|+++++++...... +++++.++.. .++.+.+...++..+|+.||+++.
T Consensus 249 ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S 328 (425)
T PRK05749 249 VLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGS 328 (425)
T ss_pred HHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCC
Confidence 46788888888899998765433333 5666654321 145666666789999999999543
Q ss_pred --cCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHH
Q 031484 61 --RAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERAL 138 (159)
Q Consensus 61 --~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~ 138 (159)
.+|+.+++|+|++|+|+|+.|.. ....+..+.+.+.|.+ +..+| ++++++++.++++|++.+++|+++++
T Consensus 329 ~~e~~g~~~lEAma~G~PVI~g~~~----~~~~e~~~~~~~~g~~--~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~ 400 (425)
T PRK05749 329 LVKRGGHNPLEPAAFGVPVISGPHT----FNFKEIFERLLQAGAA--IQVED--AEDLAKAVTYLLTDPDARQAYGEAGV 400 (425)
T ss_pred cCCCCCCCHHHHHHhCCCEEECCCc----cCHHHHHHHHHHCCCe--EEECC--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 23577899999999999998764 2223334444445544 33444 89999999999999999999999998
Q ss_pred hcCC--CChHHHHHHHHHHhhh
Q 031484 139 KAAK--PGASADIAQHILSLVE 158 (159)
Q Consensus 139 ~~~~--~~~~~~~~~~i~~~~~ 158 (159)
+... ....+++.+.+.++++
T Consensus 401 ~~~~~~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 401 AFLKQNQGALQRTLQLLEPYLP 422 (425)
T ss_pred HHHHhCccHHHHHHHHHHHhcc
Confidence 8763 3466888888877654
No 31
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=1.3e-14 Score=117.28 Aligned_cols=149 Identities=10% Similarity=0.120 Sum_probs=113.2
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC---C-hHHHHHHHHh
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA---G-AMTCYEILAT 73 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~---G-~~t~~Eal~~ 73 (159)
+++++..+++..|++++++++++...+++++.++. .++|.|.|+.+++..+|+.+|+++..| | +++++|||++
T Consensus 416 LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~ 495 (578)
T PRK15490 416 WIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMV 495 (578)
T ss_pred HHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHh
Confidence 35677788888899999877555555667666543 368999999999999999999999754 3 7899999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHH---HHHhcCHHHHHHHHHHHHhcC-CCChHHHH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTI---EEILGNEALMAEMSERALKAA-KPGASADI 149 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l---~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~ 149 (159)
|+|+|++...+ ..+.+.+...|+.++.++ ++.+.+.+ ..+..+...+..|++++++.. ...+++.+
T Consensus 496 GlPVVATdvGG--------~~EiV~dG~nG~LVp~~D--~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~M 565 (578)
T PRK15490 496 GVPVISTPAGG--------SAECFIEGVSGFILDDAQ--TVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHM 565 (578)
T ss_pred CCCEEEeCCCC--------cHHHcccCCcEEEECCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 99999987642 345566778899998776 56666554 445555555667888888776 56799999
Q ss_pred HHHHHHhhhC
Q 031484 150 AQHILSLVES 159 (159)
Q Consensus 150 ~~~i~~~~~~ 159 (159)
++...++++|
T Consensus 566 v~~y~ki~~~ 575 (578)
T PRK15490 566 VGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHh
Confidence 9999888765
No 32
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.63 E-value=1.1e-14 Score=121.26 Aligned_cols=150 Identities=9% Similarity=0.084 Sum_probs=114.8
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC---C-hHHHHHHHHh
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA---G-AMTCYEILAT 73 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~---G-~~t~~Eal~~ 73 (159)
|++++..+++.+|++++++++++...++++++++. .++|.|.|+.+++..+|+.||+++..| | +++++|||++
T Consensus 535 LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~ 614 (694)
T PRK15179 535 WVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFS 614 (694)
T ss_pred HHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHc
Confidence 46788888888999999877665556667666543 358999999999999999999998644 3 7889999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGASADIAQH 152 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (159)
|+|+|+++..+ ..+.+.+...|+.++.++.+++++++++.+++.+......++++++... ...+++.+++.
T Consensus 615 G~PVVat~~gG--------~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~ 686 (694)
T PRK15179 615 GVPVVTTLAGG--------AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIAS 686 (694)
T ss_pred CCeEEEECCCC--------hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999986541 3345666678999987775567888888888776554455666666655 46789999988
Q ss_pred HHHhhh
Q 031484 153 ILSLVE 158 (159)
Q Consensus 153 i~~~~~ 158 (159)
+.++..
T Consensus 687 ~~~lY~ 692 (694)
T PRK15179 687 TVRCYQ 692 (694)
T ss_pred HHHHhC
Confidence 887654
No 33
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.63 E-value=1.5e-14 Score=117.01 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=115.7
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC---C-hHHHHHHHHh
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA---G-AMTCYEILAT 73 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~---G-~~t~~Eal~~ 73 (159)
|++++..+.+..|++++++++++...+.++++++. ..+|.+.|+. ++.++++.||+++..| | +.+++|||++
T Consensus 337 li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~ 415 (500)
T TIGR02918 337 LVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGS 415 (500)
T ss_pred HHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHh
Confidence 46788888888999999776544445667666543 3578999986 6899999999999755 2 7899999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccC--CCC----hhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITED--ELD----SITLETTIEEILGNEALMAEMSERALKAAKPGASA 147 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~--~~~----~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
|+|+|+.+..+ + ..+.+.+...|++++.+ +.+ ++++++++.++++ +..+++|++++++.....+++
T Consensus 416 G~PVI~~dv~~---G----~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 416 GLGMIGFDVNY---G----NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred CCCEEEecCCC---C----CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcCHH
Confidence 99999987542 1 23456667789988732 112 6789999999995 556889999999888888999
Q ss_pred HHHHHHHHhhh
Q 031484 148 DIAQHILSLVE 158 (159)
Q Consensus 148 ~~~~~i~~~~~ 158 (159)
.+++.+.++++
T Consensus 488 ~v~~~w~~ll~ 498 (500)
T TIGR02918 488 NIIEKWKKLVR 498 (500)
T ss_pred HHHHHHHHHHh
Confidence 99999988875
No 34
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.63 E-value=1.6e-14 Score=111.03 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=108.8
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecCC----hHHHHHHHHhC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRAG----AMTCYEILATG 74 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~G----~~t~~Eal~~g 74 (159)
++++.++.+..|++++++++++...+++++.+.. .+++.++|+.+++..+|+.||+++..+. +.+++|||++|
T Consensus 207 i~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G 286 (360)
T cd04951 207 LKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACE 286 (360)
T ss_pred HHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcC
Confidence 5667777777789999877555555556555432 3589999999999999999999997663 68899999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEIL-GNEALMAEMSERALKAAKPGASADIAQHI 153 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (159)
+|+|+.+.++ ..+.+.+ .|..+..++ ++++++++.+++ .++..++.+..+........+++.+++.+
T Consensus 287 ~PvI~~~~~~--------~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 354 (360)
T cd04951 287 LPVVATDAGG--------VREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQW 354 (360)
T ss_pred CCEEEecCCC--------hhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999986542 2233443 556666665 889999999999 56777777777633444667999999998
Q ss_pred HHhhh
Q 031484 154 LSLVE 158 (159)
Q Consensus 154 ~~~~~ 158 (159)
.++..
T Consensus 355 ~~~y~ 359 (360)
T cd04951 355 LTLYT 359 (360)
T ss_pred HHHhh
Confidence 88764
No 35
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.62 E-value=6.1e-15 Score=114.70 Aligned_cols=143 Identities=15% Similarity=0.240 Sum_probs=111.1
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhh---cCCCeEEecccccHHHHHhhCceEEecC----ChHHHHHHHHh
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVR---NHPRLLLTPFLHSMDLAYAAADLIVSRA----GAMTCYEILAT 73 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~---~~~~v~~~~~~~~~~~~l~~ad~~i~~~----G~~t~~Eal~~ 73 (159)
+++++..+....|++++++++.......+.+... ...++.+.|+.+++.++|+.||+++..+ .+.+++|||++
T Consensus 222 li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~ 301 (372)
T cd04949 222 LIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSH 301 (372)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhC
Confidence 3677888888889999977654443444433332 2357999999889999999999999654 26889999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQH 152 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (159)
|+|+|+.+..+ + ..+.+.+...|++++.++ ++++++++.++++|+..++++++++++.....+++++++.
T Consensus 302 G~PvI~~~~~~---g----~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 302 GLPVISYDVNY---G----PSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred CCCEEEecCCC---C----cHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999986542 1 234566677899998776 8999999999999999999999999887767777777654
No 36
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.62 E-value=2.7e-14 Score=108.31 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=113.1
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHh---hcCCCeEEeccc--ccHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLV---RNHPRLLLTPFL--HSMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~---~~~~~v~~~~~~--~~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+....++++++++++......+++.+ ...+++.+.+++ +++.++|+.||+++..+ ++++++||++
T Consensus 218 i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~ 297 (374)
T cd03801 218 LEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMA 297 (374)
T ss_pred HHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHH
Confidence 45666666667889997665444445554433 234689999999 68999999999999643 3678999999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCChHHHHHH
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERAL-KAAKPGASADIAQ 151 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 151 (159)
+|+|+|+.+.+. ..+.+.+.+.|+.+...+ ++++++.+.+++.++..+++++++++ .......++++++
T Consensus 298 ~g~pvI~~~~~~--------~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 298 AGLPVVASDVGG--------IPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred cCCcEEEeCCCC--------hhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999987642 234555577888887766 89999999999999999999999987 4446679999999
Q ss_pred HHHHhh
Q 031484 152 HILSLV 157 (159)
Q Consensus 152 ~i~~~~ 157 (159)
.+.+++
T Consensus 368 ~~~~~~ 373 (374)
T cd03801 368 RTEEVY 373 (374)
T ss_pred HHHHhh
Confidence 888765
No 37
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.61 E-value=2.1e-14 Score=111.96 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=110.2
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCccc------HHHHHHHh---hcCCCeEEecccc--cHHHHHhhCceEEecCC----hH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEA------FNEMESLV---RNHPRLLLTPFLH--SMDLAYAAADLIVSRAG----AM 65 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~------~~~l~~~~---~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G----~~ 65 (159)
+++++..+....+++++++++|... ...++++. ...+++.++|+++ ++..+++.||+++..+- +.
T Consensus 238 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~ 317 (398)
T cd03800 238 LIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGL 317 (398)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCc
Confidence 3566777776778999988776532 12222222 2246899999986 68999999999996542 57
Q ss_pred HHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCC
Q 031484 66 TCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPG 144 (159)
Q Consensus 66 t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~ 144 (159)
+++|||++|+|+|+.+.. + ..+.+.+.+.|++++.++ ++++++.+.+++++++.++.|..++++.. ...
T Consensus 318 ~l~Ea~a~G~Pvi~s~~~----~----~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~ 387 (398)
T cd03800 318 TALEAMACGLPVVATAVG----G----PRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRLSRAGLRRARARY 387 (398)
T ss_pred HHHHHHhcCCCEEECCCC----C----HHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 899999999999988653 1 344566667898888776 89999999999999999999999998877 667
Q ss_pred hHHHHHHHHH
Q 031484 145 ASADIAQHIL 154 (159)
Q Consensus 145 ~~~~~~~~i~ 154 (159)
+++.+++.+.
T Consensus 388 s~~~~~~~~~ 397 (398)
T cd03800 388 TWERVAARLL 397 (398)
T ss_pred CHHHHHHHHh
Confidence 8888887764
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.60 E-value=4e-14 Score=107.80 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=109.2
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhh----cCCCeEEecccccHHHHHhhCceEEecCC----hHHHHHHHH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVR----NHPRLLLTPFLHSMDLAYAAADLIVSRAG----AMTCYEILA 72 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~v~~~~~~~~~~~~l~~ad~~i~~~G----~~t~~Eal~ 72 (159)
+++++..+...++++++++++........+.... ...++.+.+..+++..+|+.||+++..+. +++++||++
T Consensus 211 li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 290 (365)
T cd03807 211 LLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMA 290 (365)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHh
Confidence 3566777777788999976644333333322222 23578899988899999999999997553 578999999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHH
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGASADIAQ 151 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (159)
+|+|+|+.+.++ ..+.+.+ .|+.+..++ ++.+++++.++++++..++++++++++.. ...+++++++
T Consensus 291 ~g~PvI~~~~~~--------~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 358 (365)
T cd03807 291 CGLPVVATDVGD--------NAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVE 358 (365)
T ss_pred cCCCEEEcCCCC--------hHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999986542 2334444 677777665 89999999999999999999999988876 4569999998
Q ss_pred HHHHhh
Q 031484 152 HILSLV 157 (159)
Q Consensus 152 ~i~~~~ 157 (159)
.+.++.
T Consensus 359 ~~~~~y 364 (365)
T cd03807 359 AYEELY 364 (365)
T ss_pred HHHHHh
Confidence 888764
No 39
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.60 E-value=2.8e-14 Score=112.35 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=106.4
Q ss_pred HHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecC----C-hHHHHHHHHhCCcEEE
Q 031484 5 YYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRA----G-AMTCYEILATGKPSIL 79 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~----G-~~t~~Eal~~g~P~I~ 79 (159)
+..+.+.+|++++++++++. ..+++++ ...++|.++|+++++..+|+.||+++..+ | ++.++|||++|+|+|+
T Consensus 250 ~~~l~~~~p~~~l~ivG~g~-~~~~~~l-~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~ 327 (397)
T TIGR03087 250 FPAVRARRPAAEFYIVGAKP-SPAVRAL-AALPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVA 327 (397)
T ss_pred HHHHHHHCCCcEEEEECCCC-hHHHHHh-ccCCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEe
Confidence 44455667999997765443 3444443 23468999999999999999999998542 3 4569999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Q 031484 80 IPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGASADIAQHILSLVE 158 (159)
Q Consensus 80 ~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 158 (159)
++.. .+ ......+.|+.+. ++ ++++++++.++++|+..+++|++++++.. ...++++.++.+.++++
T Consensus 328 t~~~----~~-----~i~~~~~~g~lv~-~~--~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 328 SPEA----AE-----GIDALPGAELLVA-AD--PADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred cCcc----cc-----cccccCCcceEeC-CC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8653 11 0112345677775 44 89999999999999999999999998876 56799999999998875
No 40
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.60 E-value=4.4e-14 Score=110.10 Aligned_cols=143 Identities=14% Similarity=0.227 Sum_probs=106.5
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc-c-HHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecCChHHHHHHHHhCCcE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE-A-FNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~-~-~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
++++.++.+.+++++++++++++ . ...+.+.....+++.+.+..+ ++..+|+.||++++.+|+. +.||+++|+|+
T Consensus 218 l~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~~-~~EA~a~g~Pv 296 (365)
T TIGR00236 218 FKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSGGV-QEEAPSLGKPV 296 (365)
T ss_pred HHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECChhH-HHHHHHcCCCE
Confidence 56677777777889987776653 2 233433333346899998775 5778999999999998876 59999999999
Q ss_pred EEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Q 031484 78 ILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSL 156 (159)
Q Consensus 78 I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 156 (159)
|.++..+ +.+ + +...|.++.++ .+ ++.+++++.++++|+..+++|......++++++++++++.|.+.
T Consensus 297 I~~~~~~---~~~----e-~~~~g~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 297 LVLRDTT---ERP----E-TVEAGTNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNH 364 (365)
T ss_pred EECCCCC---CCh----H-HHhcCceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhh
Confidence 9985431 121 1 33456666664 33 89999999999999999999998887788888999999988753
No 41
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.60 E-value=5.2e-14 Score=109.82 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=108.9
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCccc--------HHHHHHHhhcCCCeEEeccc----ccHHHHHhhCceEEecCC----h
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEA--------FNEMESLVRNHPRLLLTPFL----HSMDLAYAAADLIVSRAG----A 64 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~--------~~~l~~~~~~~~~v~~~~~~----~~~~~~l~~ad~~i~~~G----~ 64 (159)
|++++..+.+..+++++++++++.. ++++.+......++.++++. .++..+|+.||+++..+. +
T Consensus 208 ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g 287 (372)
T cd03792 208 VIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFG 287 (372)
T ss_pred HHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCC
Confidence 3667777777778999977665421 12222222224578888876 368899999999997652 6
Q ss_pred HHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CC
Q 031484 65 MTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KP 143 (159)
Q Consensus 65 ~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~ 143 (159)
.+++|||++|+|+|+.+.++ ..+.+.+...|+.++. .+.++.++.+++.+++.+++|++++++.. ..
T Consensus 288 ~~~lEA~a~G~Pvv~s~~~~--------~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~ 355 (372)
T cd03792 288 LTVTEALWKGKPVIAGPVGG--------IPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVREN 355 (372)
T ss_pred HHHHHHHHcCCCEEEcCCCC--------chhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999986542 2234566677877653 56888899999999999999999998875 56
Q ss_pred ChHHHHHHHHHHhhh
Q 031484 144 GASADIAQHILSLVE 158 (159)
Q Consensus 144 ~~~~~~~~~i~~~~~ 158 (159)
..++.+++.+++++.
T Consensus 356 ~s~~~~~~~~~~~~~ 370 (372)
T cd03792 356 FLITRHLKDYLYLIS 370 (372)
T ss_pred cCHHHHHHHHHHHHH
Confidence 799999999988764
No 42
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=108.86 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=113.6
Q ss_pred hhhHHHHHhhcCCee--EEEEcCcc----cHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCC
Q 031484 2 LNLYYQMLMEKHNLF--IIWQTGVE----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGK 75 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~~G~~----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~ 75 (159)
+.++.+.....++++ ..+++|+. .++.+...+.+.+++.+..|..++.++|+.|+.+||++|++|++|.+++|+
T Consensus 236 i~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k 315 (400)
T COG4671 236 IETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGK 315 (400)
T ss_pred HHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeecccchhhhHHHhCCC
Confidence 455555555556666 77899995 244554444446899999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 76 PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 76 P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
|.+++|.... ..+|...++.+++.|..-++.+++++++.+++++...+..|+.. ...-.=+|.+.+++.+-.
T Consensus 316 ~aLivPr~~p-~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~~-------~~~L~L~G~~~~a~~l~e 387 (400)
T COG4671 316 PALIVPRAAP-REEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSPS-------KPHLDLEGLEHIARILAE 387 (400)
T ss_pred ceEEeccCCC-cHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCCCC-------ccccCchhhHhHHHHHHH
Confidence 9999999643 24788889999999998888899999999999999888754321 011133466777776655
Q ss_pred hh
Q 031484 156 LV 157 (159)
Q Consensus 156 ~~ 157 (159)
++
T Consensus 388 ~L 389 (400)
T COG4671 388 LL 389 (400)
T ss_pred Hh
Confidence 54
No 43
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.59 E-value=7e-14 Score=110.49 Aligned_cols=145 Identities=12% Similarity=0.183 Sum_probs=107.1
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc--CCCeEEecccc--cHHHHHhhCceEEecC--C------hHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN--HPRLLLTPFLH--SMDLAYAAADLIVSRA--G------AMTCYE 69 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~--~~~v~~~~~~~--~~~~~l~~ad~~i~~~--G------~~t~~E 69 (159)
++++..+ ++++++++++++.+...++++++++. .++|.++|+.+ ++.++|+.||+++..+ + ++.+.|
T Consensus 248 i~a~~~l-~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~e 326 (412)
T PRK10307 248 IDAARRL-RDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTN 326 (412)
T ss_pred HHHHHHh-ccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHH
Confidence 5556544 45678999766444456667665542 35899999985 7899999999987432 1 345789
Q ss_pred HHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHH
Q 031484 70 ILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK-PGASAD 148 (159)
Q Consensus 70 al~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~-~~~~~~ 148 (159)
+|++|+|+|+++.++ .. ..+.+. +.|++++.+| ++++++++.++++|+..+++|++++++... ..+++.
T Consensus 327 ama~G~PVi~s~~~g---~~---~~~~i~--~~G~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 327 MLASGRNVVATAEPG---TE---LGQLVE--GIGVCVEPES--VEALVAAIAALARQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred HHHcCCCEEEEeCCC---ch---HHHHHh--CCcEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999999986542 11 122233 6888888776 899999999999999999999999988764 568888
Q ss_pred HHHHHHHhh
Q 031484 149 IAQHILSLV 157 (159)
Q Consensus 149 ~~~~i~~~~ 157 (159)
+++.+.+++
T Consensus 397 ~~~~~~~~~ 405 (412)
T PRK10307 397 VLRQFIADI 405 (412)
T ss_pred HHHHHHHHH
Confidence 887777654
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.59 E-value=9.4e-14 Score=105.97 Aligned_cols=142 Identities=17% Similarity=0.217 Sum_probs=103.6
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEeccc--ccHHHHHhhCceEEecC-----ChHHHHHHHHhC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFL--HSMDLAYAAADLIVSRA-----GAMTCYEILATG 74 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~--~~~~~~l~~ad~~i~~~-----G~~t~~Eal~~g 74 (159)
++++..+.. ++++++++++...............++.+.|++ .++.++|+.||+++..+ .+.+++|+|++|
T Consensus 210 i~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G 287 (359)
T cd03823 210 LEAFKRLPR--GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG 287 (359)
T ss_pred HHHHHHHHh--cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC
Confidence 344444443 688886654443333222222234689999998 58999999999999543 367899999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHIL 154 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
+|+|+.+.++ ..+.+.+...|+.+..+| .+.+++++.++++|+..++.+++++++.... +.+++.+.
T Consensus 288 ~Pvi~~~~~~--------~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 354 (359)
T cd03823 288 VPVIASDIGG--------MAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRSI---EDQAEEYL 354 (359)
T ss_pred CCEEECCCCC--------HHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH---HHHHHHHH
Confidence 9999986541 334566666788888776 8999999999999999999999988776543 77777777
Q ss_pred Hhhh
Q 031484 155 SLVE 158 (159)
Q Consensus 155 ~~~~ 158 (159)
+++.
T Consensus 355 ~~~~ 358 (359)
T cd03823 355 KLYR 358 (359)
T ss_pred HHhh
Confidence 7664
No 45
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.57 E-value=1e-13 Score=96.91 Aligned_cols=129 Identities=16% Similarity=0.286 Sum_probs=95.8
Q ss_pred ChhhHHHHHhh-cCCeeEEEEcCcccHHHHHHHhh---cCCCeEEecccc--cHHHHHhhCceEEecC----ChHHHHHH
Q 031484 1 MLNLYYQMLME-KHNLFIIWQTGVEAFNEMESLVR---NHPRLLLTPFLH--SMDLAYAAADLIVSRA----GAMTCYEI 70 (159)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~G~~~~~~l~~~~~---~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~~t~~Ea 70 (159)
|++++..+..+ .+++++++++.......+...+. ...++.++++.+ ++..+++.||++++.+ ++.+++||
T Consensus 33 li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea 112 (172)
T PF00534_consen 33 LIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEA 112 (172)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence 35677777765 78998876541222333333322 235899999997 8999999999999753 47889999
Q ss_pred HHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHh
Q 031484 71 LATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALK 139 (159)
Q Consensus 71 l~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~ 139 (159)
|++|+|+|+...+ ...+.+.+...|+.++..+ ++.+++.+.++++++++++.|++++++
T Consensus 113 ~~~g~pvI~~~~~--------~~~e~~~~~~~g~~~~~~~--~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 113 MACGCPVIASDIG--------GNNEIINDGVNGFLFDPND--IEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHTT-EEEEESST--------HHHHHSGTTTSEEEESTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccc--------CCceeeccccceEEeCCCC--HHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 9999999998643 1345566667799988765 899999999999999999999998875
No 46
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.57 E-value=7.9e-14 Score=106.91 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=110.5
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc-HHHH-------HHHhhcCCCeEEecc-cc--cHHHHHhhCceEEecC------Ch
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA-FNEM-------ESLVRNHPRLLLTPF-LH--SMDLAYAAADLIVSRA------GA 64 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~l-------~~~~~~~~~v~~~~~-~~--~~~~~l~~ad~~i~~~------G~ 64 (159)
++++..+...+++++++++++... .... .+.....++|.+.+. ++ ++..+|+.||+++..+ .+
T Consensus 204 l~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~ 283 (366)
T cd03822 204 LEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQS 283 (366)
T ss_pred HHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccc
Confidence 567777777788999877654322 1111 112223468988865 54 7999999999998532 25
Q ss_pred HHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 031484 65 MTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPG 144 (159)
Q Consensus 65 ~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 144 (159)
++++|||++|+|+|+.+.+. .+.+.+.+.|+.+..++ ++++++++.++++++..+.+|++++++.....
T Consensus 284 ~~~~Ea~a~G~PvI~~~~~~---------~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 352 (366)
T cd03822 284 GVLAYAIGFGKPVISTPVGH---------AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARAM 352 (366)
T ss_pred hHHHHHHHcCCCEEecCCCC---------hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhhC
Confidence 78999999999999987641 22355667888887776 89999999999999999999999999988779
Q ss_pred hHHHHHHHHHHhh
Q 031484 145 ASADIAQHILSLV 157 (159)
Q Consensus 145 ~~~~~~~~i~~~~ 157 (159)
+++++++.+.+++
T Consensus 353 s~~~~~~~~~~~~ 365 (366)
T cd03822 353 SWERVAERYLRLL 365 (366)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 47
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.57 E-value=7.1e-14 Score=109.25 Aligned_cols=141 Identities=12% Similarity=0.205 Sum_probs=105.9
Q ss_pred ChhhHHHHHhhc---CCeeEEEEcCccc--------HHHHHHHhhc----CCCeEEecccc--cHHHHHhhCceEEecCC
Q 031484 1 MLNLYYQMLMEK---HNLFIIWQTGVEA--------FNEMESLVRN----HPRLLLTPFLH--SMDLAYAAADLIVSRAG 63 (159)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~G~~~--------~~~l~~~~~~----~~~v~~~~~~~--~~~~~l~~ad~~i~~~G 63 (159)
|++++.++.... ++++++++++... .+++++.++. ..+|.++|+.+ ++..+|+.||+++..+.
T Consensus 229 ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~ 308 (392)
T cd03805 229 AIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPS 308 (392)
T ss_pred HHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCC
Confidence 367777777776 7999977665421 2455555433 35899999996 56899999999986442
Q ss_pred ----hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHh
Q 031484 64 ----AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALK 139 (159)
Q Consensus 64 ----~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~ 139 (159)
+.+++|||++|+|+|++..++ ..+.+.+.+.|+.++. + ++++++.+.+++++++.+++|++++++
T Consensus 309 ~E~~g~~~lEAma~G~PvI~s~~~~--------~~e~i~~~~~g~~~~~-~--~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 309 NEHFGIVPLEAMYAGKPVIACNSGG--------PLETVVDGETGFLCEP-T--PEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred cCCCCchHHHHHHcCCCEEEECCCC--------cHHHhccCCceEEeCC-C--HHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 578899999999999986542 2234555667887764 4 899999999999999999999999887
Q ss_pred cC-CCChHHHHHHH
Q 031484 140 AA-KPGASADIAQH 152 (159)
Q Consensus 140 ~~-~~~~~~~~~~~ 152 (159)
.. ...+++.+++.
T Consensus 378 ~~~~~~s~~~~~~~ 391 (392)
T cd03805 378 RVKEKFSTEAFAER 391 (392)
T ss_pred HHHHhcCHHHHhhh
Confidence 65 55678777654
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.57 E-value=1.3e-13 Score=111.24 Aligned_cols=145 Identities=13% Similarity=0.120 Sum_probs=110.0
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcc-c---HHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC----ChHHHHH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVE-A---FNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA----GAMTCYE 69 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~-~---~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~----G~~t~~E 69 (159)
|++++..+.+..|+++++++++.. . .++++++++. .++|.++| ..++.++|+.+|+++..+ .+.+++|
T Consensus 311 li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlE 389 (475)
T cd03813 311 FIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILE 389 (475)
T ss_pred HHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHH
Confidence 356777777778999997765442 1 3445554432 36899999 567999999999998654 2688999
Q ss_pred HHHhCCcEEEecCCCCCCchHHHHHHHHHH------cCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 031484 70 ILATGKPSILIPSPNVAEGHQFKNASLMAK------LADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKP 143 (159)
Q Consensus 70 al~~g~P~I~~p~~~~~~~~q~~~~~~~~~------~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~ 143 (159)
||++|+|+|+++.+. ..+.+.+ ...|++++..| ++++++++.++++|++.+++|++++++....
T Consensus 390 Ama~G~PVVatd~g~--------~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~ 459 (475)
T cd03813 390 AMAAGIPVVATDVGS--------CRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAMGEAGRKRVER 459 (475)
T ss_pred HHHcCCCEEECCCCC--------hHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999976541 2334444 23788888776 8999999999999999999999999877644
Q ss_pred -ChHHHHHHHHHHh
Q 031484 144 -GASADIAQHILSL 156 (159)
Q Consensus 144 -~~~~~~~~~i~~~ 156 (159)
..++.+++...++
T Consensus 460 ~~s~~~~~~~y~~l 473 (475)
T cd03813 460 YYTLERMIDSYRRL 473 (475)
T ss_pred hCCHHHHHHHHHHH
Confidence 5788888877665
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.56 E-value=8.9e-14 Score=106.63 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=106.1
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHh--hcCCCeEEecccc--cHHHHHhhCceEEecCC---------hHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLV--RNHPRLLLTPFLH--SMDLAYAAADLIVSRAG---------AMTCY 68 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~--~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G---------~~t~~ 68 (159)
++++.++.+. ++++++++++....+.+.+.. ...+++.+.++.+ ++.++|+.||+++..+. +++++
T Consensus 239 ~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~ 317 (394)
T cd03794 239 LEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLF 317 (394)
T ss_pred HHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHH
Confidence 4566666655 788987664444455555532 2347899999885 79999999999985432 44579
Q ss_pred HHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHH
Q 031484 69 EILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK-PGASA 147 (159)
Q Consensus 69 Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~-~~~~~ 147 (159)
||+++|+|+|+.+.++ ..+.+.+.+.|+.+..++ ++.+++++.+++.|+..++.+++++.+... ..+++
T Consensus 318 Ea~~~G~pvi~~~~~~--------~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 318 EYMAAGKPVLASVDGE--------SAELVEEAGAGLVVPPGD--PEALAAAILELLDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HHHHCCCcEEEecCCC--------chhhhccCCcceEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHH
Confidence 9999999999997752 123344457788887765 899999999999999999999999988875 66888
Q ss_pred HHHHHH
Q 031484 148 DIAQHI 153 (159)
Q Consensus 148 ~~~~~i 153 (159)
.+++.+
T Consensus 388 ~~~~~~ 393 (394)
T cd03794 388 KLAERL 393 (394)
T ss_pred HHHHhc
Confidence 887764
No 50
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=99.56 E-value=5.9e-14 Score=94.46 Aligned_cols=108 Identities=28% Similarity=0.338 Sum_probs=86.7
Q ss_pred hhHHHHHhhcCCeeEEEEcCccc--HHHHHHHhhcCCCe--EEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEA--FNEMESLVRNHPRL--LLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~--~~~l~~~~~~~~~v--~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
+.+.+.+.++.-.+++++.|+++ .++-...++....+ .-++|.|++.+.++.||++|+|+|++|++|.+..|+|.|
T Consensus 25 ~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~AdlVIsHAGaGS~letL~l~KPli 104 (170)
T KOG3349|consen 25 EEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADLVISHAGAGSCLETLRLGKPLI 104 (170)
T ss_pred HHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccEEEecCCcchHHHHHHcCCCEE
Confidence 56777888888889999999973 11111222223444 455677899999999999999999999999999999999
Q ss_pred EecCCCCCCchHHHHHHHHHHcCceeeeccCC
Q 031484 79 LIPSPNVAEGHQFKNASLMAKLADSRIITEDE 110 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~ 110 (159)
+++....+|+||.+.++.+.+.|+-+.+.+.+
T Consensus 105 vVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 105 VVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred EEeChHhhhhHHHHHHHHHHhcCcEEEeeccc
Confidence 99888888999999999999999998887543
No 51
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.56 E-value=9.2e-14 Score=106.92 Aligned_cols=130 Identities=12% Similarity=0.136 Sum_probs=98.1
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC----ChHHHHHHHHh
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA----GAMTCYEILAT 73 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~----G~~t~~Eal~~ 73 (159)
+++++..+.+.+++++++++++....+.+++.++. .+++.+.|+..++.++++.||+++..+ .+.+++|||++
T Consensus 210 li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~ 289 (358)
T cd03812 210 LIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQAS 289 (358)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHh
Confidence 36778888888899999876544445555554432 358999999889999999999999754 27889999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA 141 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~ 141 (159)
|+|+|++..++ ..+.+.+ +.+++...++ ++++++++.++++||..++++...+....
T Consensus 290 G~PvI~s~~~~--------~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 290 GLPCILSDTIT--------KEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred CCCEEEEcCCc--------hhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 99999987652 2233444 5565655444 79999999999999999988877765443
No 52
>PLN02670 transferase, transferring glycosyl groups
Probab=99.56 E-value=1.9e-13 Score=109.70 Aligned_cols=117 Identities=10% Similarity=0.107 Sum_probs=97.3
Q ss_pred CCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeecc----CC
Q 031484 37 PRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITE----DE 110 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~----~~ 110 (159)
.++.+.+|.|+ .+++++..+ +|||+|.+|++|++++|+|+|..|.. .+|..|++++++.|.|+.+.. +.
T Consensus 339 rG~vv~~W~PQ-~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~v~~~g~Gv~l~~~~~~~~ 413 (472)
T PLN02670 339 RGMIHVGWVPQ-VKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL----NEQGLNTRLLHGKKLGLEVPRDERDGS 413 (472)
T ss_pred CCeEEeCcCCH-HHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch----hccHHHHHHHHHcCeeEEeeccccCCc
Confidence 35777899997 588977666 99999999999999999999999985 689999999998999988854 23
Q ss_pred CChhHHHHHHHHHhcCH---HHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 111 LDSITLETTIEEILGNE---ALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 111 ~~~~~l~~~l~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
++.+++.+++.+++.++ .+++..++-...+....+..++++.+++.+.
T Consensus 414 ~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 414 FTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLR 464 (472)
T ss_pred CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 67899999999999775 5666666666666677788889998888764
No 53
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.56 E-value=1.9e-13 Score=104.44 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=106.1
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc-c-HHHHHHH---hhcCCCeEEecccc--cHHHHHhhCceEEecCC----hHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE-A-FNEMESL---VRNHPRLLLTPFLH--SMDLAYAAADLIVSRAG----AMTCYEI 70 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~-~-~~~l~~~---~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G----~~t~~Ea 70 (159)
++++..+..+.+++++++++... . ...++.. ....+++.++|+++ ++.++|+.||+++..+- +.+++||
T Consensus 222 i~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Ea 301 (375)
T cd03821 222 IEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEA 301 (375)
T ss_pred HHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHH
Confidence 46667777777899997664432 2 2333332 22246899999997 79999999999997552 6889999
Q ss_pred HHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHH
Q 031484 71 LATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKA-AKPGASADI 149 (159)
Q Consensus 71 l~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~ 149 (159)
|++|+|+|+.+.++ ..+.+.+ +.|+.++.+ .+.+++++.++++++..++.+.+++++. ....+++++
T Consensus 302 ma~G~PvI~~~~~~--------~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 369 (375)
T cd03821 302 LACGTPVVTTDKVP--------WQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVEERFSWTAI 369 (375)
T ss_pred HhcCCCEEEcCCCC--------HHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999986542 2334444 777777653 5899999999999999999999999888 567799988
Q ss_pred HHHHH
Q 031484 150 AQHIL 154 (159)
Q Consensus 150 ~~~i~ 154 (159)
++.+.
T Consensus 370 ~~~~~ 374 (375)
T cd03821 370 AQQLL 374 (375)
T ss_pred HHHhh
Confidence 88765
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.55 E-value=2.4e-13 Score=104.00 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=100.3
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHh---hcCCCeEEecccc--cHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLV---RNHPRLLLTPFLH--SMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~---~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+....++++++++++....+.+++.+ ...+++.+.|+++ ++..+|+.||+++..+ ++.+++|+|+
T Consensus 221 ~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~ 300 (374)
T cd03817 221 IRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMA 300 (374)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHH
Confidence 45566666666889997765554455555543 2246899999985 6899999999999654 3678999999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGA 145 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+|+|+|+.+.+. ..+.+.+.+.|+.+..++ . .+.+++.++++++..+++|++++++....+.
T Consensus 301 ~g~PvI~~~~~~--------~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 301 AGLPVVAVDAPG--------LPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAEKFS 362 (374)
T ss_pred cCCcEEEeCCCC--------hhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 999999987642 234566667888887654 3 8999999999999999999999888765443
No 55
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.54 E-value=1.8e-13 Score=108.29 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=104.0
Q ss_pred ChhhHHHHHhhcCCe--eEEEEcCcccHHHHHHHhhc---CCCeEEecccc--cHHHHHhh--CceEEecC---C-hHHH
Q 031484 1 MLNLYYQMLMEKHNL--FIIWQTGVEAFNEMESLVRN---HPRLLLTPFLH--SMDLAYAA--ADLIVSRA---G-AMTC 67 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~--ad~~i~~~---G-~~t~ 67 (159)
|++++..+...+|+. ++++++++...+.+++.++. ..+|.++|+++ ++..+|+. +|+++..+ | +.++
T Consensus 248 li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~l 327 (407)
T cd04946 248 IIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSI 327 (407)
T ss_pred HHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHH
Confidence 467788887777654 44545544455666665532 34799999996 57788875 67777544 2 6889
Q ss_pred HHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChH
Q 031484 68 YEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK-PGAS 146 (159)
Q Consensus 68 ~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~-~~~~ 146 (159)
+|||++|+|+|+++.++ ..+.+.+...|+.+...+ +++++++++.++++|+..+++|++++++... ...+
T Consensus 328 lEAma~G~PVIas~vgg--------~~e~i~~~~~G~l~~~~~-~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~ 398 (407)
T cd04946 328 MEAMSFGIPVIATNVGG--------TPEIVDNGGNGLLLSKDP-TPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNA 398 (407)
T ss_pred HHHHHcCCCEEeCCCCC--------cHHHhcCCCcEEEeCCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 99999999999986542 234455555888876532 3899999999999999999999999988763 4566
Q ss_pred HHHHHHH
Q 031484 147 ADIAQHI 153 (159)
Q Consensus 147 ~~~~~~i 153 (159)
+...+.+
T Consensus 399 ~~~~~~~ 405 (407)
T cd04946 399 SKNYREF 405 (407)
T ss_pred HHhHHHh
Confidence 6665544
No 56
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.54 E-value=1.7e-13 Score=105.15 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=105.0
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEec----------CChHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSR----------AGAMT 66 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~----------~G~~t 66 (159)
++++.++....+++++.++++....+.+++.++. .+++.+.|+.+ ++..+|+.||+++.. +.+.+
T Consensus 198 ~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~ 277 (355)
T cd03799 198 LEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVV 277 (355)
T ss_pred HHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHH
Confidence 4556666555678898776554445555554432 36899999994 799999999999863 33688
Q ss_pred HHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCh
Q 031484 67 CYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGA 145 (159)
Q Consensus 67 ~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~ 145 (159)
++|+|++|+|+|+.+.+. ..+.+.+...|+.+..++ ++.+++.+.++++++..+..+++++++.. ...+
T Consensus 278 ~~Ea~a~G~Pvi~~~~~~--------~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s 347 (355)
T cd03799 278 LMEAMAMGLPVISTDVSG--------IPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFD 347 (355)
T ss_pred HHHHHHcCCCEEecCCCC--------cchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999986542 123455555888887665 89999999999999999999999988776 4457
Q ss_pred HHHHHHH
Q 031484 146 SADIAQH 152 (159)
Q Consensus 146 ~~~~~~~ 152 (159)
++..++.
T Consensus 348 ~~~~~~~ 354 (355)
T cd03799 348 IRKQAAR 354 (355)
T ss_pred HHHHhhc
Confidence 7766653
No 57
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.54 E-value=1.4e-13 Score=105.73 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=97.3
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccH----HHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC-----ChHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAF----NEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA-----GAMTCYE 69 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~----~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~-----G~~t~~E 69 (159)
++++..+...+++++++++++.... +.+.+.+.. .++|.++|+.+++.++|+.||+++..+ .+.+++|
T Consensus 204 i~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~E 283 (355)
T cd03819 204 IEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVE 283 (355)
T ss_pred HHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHH
Confidence 5666776666788998776554322 223333322 358999999889999999999999765 2678999
Q ss_pred HHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHh-cCHHHHHHHHHHHHhcCC
Q 031484 70 ILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEIL-GNEALMAEMSERALKAAK 142 (159)
Q Consensus 70 al~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll-~~~~~~~~~~~~~~~~~~ 142 (159)
||++|+|+|+...+ + ..+.+.+...|+.+..++ ++.+++++..++ .+++.++++++++++...
T Consensus 284 A~a~G~PvI~~~~~----~----~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 284 AQAMGRPVIASDHG----G----ARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHhcCCCEEEcCCC----C----cHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999988653 1 234455556888887766 899999996555 589999999999887763
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.53 E-value=6.5e-13 Score=105.41 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=96.8
Q ss_pred ChhhHHHHHh------hcCCeeEEEEcCcccHHHHHHHhhc--CCCeEEe-cccc--cHHHHHhhCceEEe----cCC--
Q 031484 1 MLNLYYQMLM------EKHNLFIIWQTGVEAFNEMESLVRN--HPRLLLT-PFLH--SMDLAYAAADLIVS----RAG-- 63 (159)
Q Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~G~~~~~~l~~~~~~--~~~v~~~-~~~~--~~~~~l~~ad~~i~----~~G-- 63 (159)
|++++..+.+ .+|++++++++++...+++++.++. ..++.++ +|.+ +++++|+.||++++ ..|
T Consensus 250 li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~ 329 (415)
T cd03816 250 LLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLD 329 (415)
T ss_pred HHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccC
Confidence 3566666654 2478999776555556777776553 2466655 6764 79999999999984 222
Q ss_pred -hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC---HHHHHHHHHHHHh
Q 031484 64 -AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGN---EALMAEMSERALK 139 (159)
Q Consensus 64 -~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~---~~~~~~~~~~~~~ 139 (159)
+.+++|+|+||+|+|++..++ ..+.+.+..+|+.+. + ++++++++.++++| ++.+++|++++++
T Consensus 330 ~p~~~~Eama~G~PVI~s~~~~--------~~eiv~~~~~G~lv~--d--~~~la~~i~~ll~~~~~~~~~~~m~~~~~~ 397 (415)
T cd03816 330 LPMKVVDMFGCGLPVCALDFKC--------IDELVKHGENGLVFG--D--SEELAEQLIDLLSNFPNRGKLNSLKKGAQE 397 (415)
T ss_pred CcHHHHHHHHcCCCEEEeCCCC--------HHHHhcCCCCEEEEC--C--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 678999999999999986531 345566777898873 3 89999999999999 8999999999988
Q ss_pred cC
Q 031484 140 AA 141 (159)
Q Consensus 140 ~~ 141 (159)
..
T Consensus 398 ~~ 399 (415)
T cd03816 398 ES 399 (415)
T ss_pred hh
Confidence 86
No 59
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.53 E-value=2.5e-13 Score=108.48 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=92.3
Q ss_pred CCCeEEeccc--ccHHHHHhhC----ceEEecC---C-hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceee
Q 031484 36 HPRLLLTPFL--HSMDLAYAAA----DLIVSRA---G-AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 36 ~~~v~~~~~~--~~~~~~l~~a----d~~i~~~---G-~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~ 105 (159)
.++|.+.|+. ++++.+|+.| |+++..| | +.+++|||++|+|+|++..++ ..+.+.+...|+.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg--------~~eiv~~~~~G~l 387 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG--------PRDIIANCRNGLL 387 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC--------cHHHhcCCCcEEE
Confidence 4578999975 4789999877 8998655 3 688999999999999997642 2345555668999
Q ss_pred eccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHhh
Q 031484 106 ITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGASADIAQHILSLV 157 (159)
Q Consensus 106 ~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 157 (159)
++.+| ++++++++.++++|+..+++|++++++.. ...+++.+++.+.+++
T Consensus 388 v~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 388 VDVLD--LEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred eCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 88877 89999999999999999999999998765 5679999999998876
No 60
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.53 E-value=2.7e-13 Score=106.79 Aligned_cols=145 Identities=8% Similarity=0.018 Sum_probs=103.3
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecC---C-hHHHHHHH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRA---G-AMTCYEIL 71 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~---G-~~t~~Eal 71 (159)
|++++..+.+.++++++++++++...+.++++++. .+++.++|+++ ++..+|+.||+++..+ | +.+++|||
T Consensus 211 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAm 290 (398)
T cd03796 211 LVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAA 290 (398)
T ss_pred HHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHH
Confidence 35677777778899999876555445556555432 35799999984 7999999999998654 2 57899999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHH
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKA-AKPGASADIA 150 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (159)
++|+|+|+.+..+ ..+.+. .+.+..... + ++++++++.++++++.....+..++++. ....+++.++
T Consensus 291 a~G~PVI~s~~gg--------~~e~i~-~~~~~~~~~-~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~ 358 (398)
T cd03796 291 SCGLLVVSTRVGG--------IPEVLP-PDMILLAEP-D--VESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVA 358 (398)
T ss_pred HcCCCEEECCCCC--------chhhee-CCceeecCC-C--HHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHH
Confidence 9999999987652 122333 344444433 3 7999999999998876555555555443 4567888888
Q ss_pred HHHHHhh
Q 031484 151 QHILSLV 157 (159)
Q Consensus 151 ~~i~~~~ 157 (159)
+.+.++.
T Consensus 359 ~~~~~~y 365 (398)
T cd03796 359 KRTEKVY 365 (398)
T ss_pred HHHHHHH
Confidence 8877764
No 61
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.52 E-value=3.2e-13 Score=115.59 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCCeEEecccc--cHHHHHhhC----ceEEecC----ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceee
Q 031484 36 HPRLLLTPFLH--SMDLAYAAA----DLIVSRA----GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 36 ~~~v~~~~~~~--~~~~~l~~a----d~~i~~~----G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~ 105 (159)
.++|.|.|+.+ +++.+|+.| |+++..| .+.+++|||+||+|+|++...+ ..+.+.+...|+.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG--------~~EII~~g~nGlL 618 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG--------PVDIHRVLDNGLL 618 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC--------cHHHhccCCcEEE
Confidence 45899999864 789999887 6998754 3789999999999999997642 2344556678999
Q ss_pred eccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Q 031484 106 ITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 106 ~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (159)
+++.| ++.|+++|.++++|+..+++|++++++....++|+.+++.+++.+
T Consensus 619 VdP~D--~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i 668 (1050)
T TIGR02468 619 VDPHD--QQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRI 668 (1050)
T ss_pred ECCCC--HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 98877 899999999999999999999999887777789999988887654
No 62
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.52 E-value=5.9e-13 Score=103.56 Aligned_cols=134 Identities=10% Similarity=0.130 Sum_probs=97.0
Q ss_pred cCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccc----cHHHHHhhCceEEecCC----hHHHHHHHHhCCcEEEe
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLH----SMDLAYAAADLIVSRAG----AMTCYEILATGKPSILI 80 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~----~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~P~I~~ 80 (159)
.++++++++++++..+++++.++. .++|+++|+.+ .+.++|+.+|+++..+. +.+++|||++|+|+|++
T Consensus 208 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s 287 (359)
T PRK09922 208 TGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISS 287 (359)
T ss_pred CCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEe
Confidence 457888776655556667666543 35899999974 36677788999997552 78999999999999998
Q ss_pred c-CCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHH--HHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 81 P-SPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEAL--MAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 81 p-~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
. .. + ..+.+.+...|..++.+| ++++++++.++++|++. ...+.++.+++....-..++.+.+..
T Consensus 288 ~~~~----g----~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
T PRK09922 288 DCMS----G----PRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLYFKNLNNALFS 355 (359)
T ss_pred CCCC----C----hHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6 43 1 224455667798887776 89999999999999983 46666666777655455555555444
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.51 E-value=4.8e-13 Score=103.00 Aligned_cols=143 Identities=21% Similarity=0.177 Sum_probs=104.6
Q ss_pred hhhHHHHHhh-cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc---cHHHHHhhCceEEecCC----hHHHHHHHHh
Q 031484 2 LNLYYQMLME-KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH---SMDLAYAAADLIVSRAG----AMTCYEILAT 73 (159)
Q Consensus 2 ~~~~~~~~~~-~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~---~~~~~l~~ad~~i~~~G----~~t~~Eal~~ 73 (159)
++++..+.+. .++++++++ |........ ....++.++|+++ ++..+|+.||+++..+. +.+++|||++
T Consensus 212 l~a~~~l~~~~~~~~~~~i~-G~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~ 287 (365)
T cd03825 212 IEALKRLAERWKDDIELVVF-GASDPEIPP---DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALAC 287 (365)
T ss_pred HHHHHHhhhccCCCeEEEEe-CCCchhhhc---cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhc
Confidence 3444444333 477777654 544322111 1235799999987 58899999999998652 6889999999
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA-KPGASADIAQH 152 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (159)
|+|+|+.+.++ ..+.+.+.+.|+.+...+ ++.+++++.+++++++.+.++++++++.. ...+++.+++.
T Consensus 288 g~PvI~~~~~~--------~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 357 (365)
T cd03825 288 GTPVVAFDVGG--------IPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKR 357 (365)
T ss_pred CCCEEEecCCC--------ChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999986542 123445556788877665 89999999999999999999999988876 45688999998
Q ss_pred HHHhhh
Q 031484 153 ILSLVE 158 (159)
Q Consensus 153 i~~~~~ 158 (159)
+.++..
T Consensus 358 ~~~~y~ 363 (365)
T cd03825 358 YLSLYE 363 (365)
T ss_pred HHHHHh
Confidence 888764
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.50 E-value=1e-12 Score=100.02 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=104.0
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhh---cCCCeEEecccc--cHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVR---NHPRLLLTPFLH--SMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~---~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+...++++++++.+.....+.+++.++ ..+++.+.|+++ ++.++++.||+++..+ .+++++|+++
T Consensus 221 i~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~ 300 (377)
T cd03798 221 IEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMA 300 (377)
T ss_pred HHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHh
Confidence 566666666677888866544334444544433 246899999985 6889999999999543 3678999999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHH-HhcCCCChHHHHHH
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERA-LKAAKPGASADIAQ 151 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (159)
+|+|+|+.+.+. ..+.+.+...|+.+...+ ++++++++.++++++.. .+..++ ........++..++
T Consensus 301 ~G~pvI~~~~~~--------~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~ 368 (377)
T cd03798 301 CGLPVVATDVGG--------IPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAE 368 (377)
T ss_pred cCCCEEEecCCC--------hHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHH
Confidence 999999886541 234566666678887766 89999999999999886 344443 33345567888888
Q ss_pred HHHHhhh
Q 031484 152 HILSLVE 158 (159)
Q Consensus 152 ~i~~~~~ 158 (159)
.+.+++.
T Consensus 369 ~~~~~~~ 375 (377)
T cd03798 369 RLLELYR 375 (377)
T ss_pred HHHHHHh
Confidence 8877764
No 65
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.50 E-value=1.1e-12 Score=102.47 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=100.1
Q ss_pred CCeeEEEEcCccc----HHHHHHHhhc----CCCeEEe-ccc--ccHHHHHhhCceEEecC----ChHHHHHHHHhCCcE
Q 031484 13 HNLFIIWQTGVEA----FNEMESLVRN----HPRLLLT-PFL--HSMDLAYAAADLIVSRA----GAMTCYEILATGKPS 77 (159)
Q Consensus 13 ~~~~~~~~~G~~~----~~~l~~~~~~----~~~v~~~-~~~--~~~~~~l~~ad~~i~~~----G~~t~~Eal~~g~P~ 77 (159)
+++++++++|... .+.+++.++. ..++.++ ++. +++..+|+.||+++..+ .+.+++||+++|+|+
T Consensus 228 ~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~Pv 307 (388)
T TIGR02149 228 KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPV 307 (388)
T ss_pred hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCE
Confidence 4677776655432 2344444332 1346655 455 37999999999999754 257789999999999
Q ss_pred EEecCCCCCCchHHHHHHHHHHcCceeeeccCCCCh------hHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHH
Q 031484 78 ILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDS------ITLETTIEEILGNEALMAEMSERALKAA-KPGASADIA 150 (159)
Q Consensus 78 I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~------~~l~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~ 150 (159)
|+++.++ ..+.+.+...|+.++.++ + +.+++++.++++|+..+++|++++++.. ...+++.++
T Consensus 308 I~s~~~~--------~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~ 377 (388)
T TIGR02149 308 VASATGG--------IPEVVVDGETGFLVPPDN--SDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIA 377 (388)
T ss_pred EEeCCCC--------HHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9987642 344566667899888766 5 7999999999999999999999988765 557899998
Q ss_pred HHHHHhhh
Q 031484 151 QHILSLVE 158 (159)
Q Consensus 151 ~~i~~~~~ 158 (159)
+.+.++..
T Consensus 378 ~~~~~~y~ 385 (388)
T TIGR02149 378 KKTVEMYR 385 (388)
T ss_pred HHHHHHHH
Confidence 88877653
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.50 E-value=8e-13 Score=101.46 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=95.9
Q ss_pred HHhhcCCeeEEEEcCcccHHHHHHHhh---cCCCeEEecccc--cHHHHHhhCceEEecC------ChHHHHHHHHhCCc
Q 031484 8 MLMEKHNLFIIWQTGVEAFNEMESLVR---NHPRLLLTPFLH--SMDLAYAAADLIVSRA------GAMTCYEILATGKP 76 (159)
Q Consensus 8 ~~~~~~~~~~~~~~G~~~~~~l~~~~~---~~~~v~~~~~~~--~~~~~l~~ad~~i~~~------G~~t~~Eal~~g~P 76 (159)
.++...++++++++++...+.+++.++ ..++|.++|+++ ++.++++.||+++..+ .+.+++||+++|+|
T Consensus 212 a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~P 291 (357)
T cd03795 212 AAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKP 291 (357)
T ss_pred HHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCC
Confidence 333333778866544444455555442 246999999996 5889999999998432 26789999999999
Q ss_pred EEEecCCCCCCchHHHHHHHHHH-cCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHH
Q 031484 77 SILIPSPNVAEGHQFKNASLMAK-LADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK-PGASADI 149 (159)
Q Consensus 77 ~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~ 149 (159)
+|+.+.+. ..+.+.+ .+.|+.+..+| ++++++++.++++|++.++.|++++++... ...++.+
T Consensus 292 vi~~~~~~--------~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 292 VISTEIGT--------GGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred EEecCCCC--------chhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 99986542 1223444 67888887766 899999999999999999999999887763 3355443
No 67
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.49 E-value=2.2e-13 Score=102.96 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=67.4
Q ss_pred cCCeeEEEEcCcc--cHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCch
Q 031484 12 KHNLFIIWQTGVE--AFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGH 89 (159)
Q Consensus 12 ~~~~~~~~~~G~~--~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~ 89 (159)
.+++++.+++|+. ..+++++.++..+++++.+|+++|.++|+.||++|+++| +|++|++++|+|+|++|.. ++
T Consensus 197 ~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~----~n 271 (279)
T TIGR03590 197 QINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICLA----EN 271 (279)
T ss_pred ccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEec----cc
Confidence 4678888899985 467777776656799999999999999999999999777 8899999999999999985 46
Q ss_pred HHHHHHH
Q 031484 90 QFKNASL 96 (159)
Q Consensus 90 q~~~~~~ 96 (159)
|..|++.
T Consensus 272 Q~~~a~~ 278 (279)
T TIGR03590 272 QQSNSQQ 278 (279)
T ss_pred HHHHhhh
Confidence 6777654
No 68
>PLN03004 UDP-glycosyltransferase
Probab=99.46 E-value=1.8e-12 Score=103.63 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=89.9
Q ss_pred CeeEEEEcCcc-c------------HHHHHHHhhcCCCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEE
Q 031484 14 NLFIIWQTGVE-A------------FNEMESLVRNHPRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 14 ~~~~~~~~G~~-~------------~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I 78 (159)
+..|+|+.... . .+.++++++ ..++.+.+|.|+ .++++++++ +|||+|.+|++|++++|+|+|
T Consensus 299 ~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~-~~g~~v~~W~PQ-~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v 376 (451)
T PLN03004 299 GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTE-DKGMVVKSWAPQ-VPVLNHKAVGGFVTHCGWNSILEAVCAGVPMV 376 (451)
T ss_pred CCCEEEEEcCCccccccccchhhhCChHHHHhcc-CCcEEEEeeCCH-HHHhCCCccceEeccCcchHHHHHHHcCCCEE
Confidence 34888988742 0 112233332 358899999997 489999998 999999999999999999999
Q ss_pred EecCCCCCCchHHHHHHHHHH-cCceeeeccC---CCChhHHHHHHHHHhcCHHHHHHH
Q 031484 79 LIPSPNVAEGHQFKNASLMAK-LADSRIITED---ELDSITLETTIEEILGNEALMAEM 133 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~---~~~~~~l~~~l~~ll~~~~~~~~~ 133 (159)
.+|.. .+|..|++++++ .|.|+.+..+ ..+.+.+.+++.+++.++.+++..
T Consensus 377 ~~P~~----~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a 431 (451)
T PLN03004 377 AWPLY----AEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERT 431 (451)
T ss_pred ecccc----ccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHH
Confidence 99985 688999999875 5999888643 457899999999999988777533
No 69
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.46 E-value=9.9e-13 Score=101.10 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCeEEecccc-cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhH
Q 031484 37 PRLLLTPFLH-SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSIT 115 (159)
Q Consensus 37 ~~v~~~~~~~-~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~ 115 (159)
.|+.+.+|.+ ++.++|..||++||++|.+|++|++++|+|+|++|.+. ..+|..|+..+.+.|.|+.+...++ .
T Consensus 229 ~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~--~~eQ~~na~~l~~~g~~~~l~~~~~---~ 303 (321)
T TIGR00661 229 ENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLG--QFEQGNNAVKLEDLGCGIALEYKEL---R 303 (321)
T ss_pred CCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCC--cccHHHHHHHHHHCCCEEEcChhhH---H
Confidence 5888889985 89999999999999999999999999999999999862 3589999999999999999887663 5
Q ss_pred HHHHHHHHhcCHH
Q 031484 116 LETTIEEILGNEA 128 (159)
Q Consensus 116 l~~~l~~ll~~~~ 128 (159)
+.+.+.+.+.++.
T Consensus 304 ~~~~~~~~~~~~~ 316 (321)
T TIGR00661 304 LLEAILDIRNMKR 316 (321)
T ss_pred HHHHHHhcccccc
Confidence 5555555555554
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.46 E-value=2.9e-12 Score=96.90 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=94.4
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecC----ChHHHHHHHHhC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRA----GAMTCYEILATG 74 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~----G~~t~~Eal~~g 74 (159)
++++..+....++++++++++....+.+++.+.. .+++.+.++.+++.++++.||+++..+ .+.+++||+++|
T Consensus 208 i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G 287 (353)
T cd03811 208 IRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALG 287 (353)
T ss_pred HHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhC
Confidence 4566666666678999776555444554444332 458999999999999999999999654 267899999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHH---HHHHHHHhcCHHHHHHHHHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITL---ETTIEEILGNEALMAEMSERAL 138 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l---~~~l~~ll~~~~~~~~~~~~~~ 138 (159)
+|+|+.+.++ ..+.+.+...|++++.++ .+.+ .+.+..+..++..+++++.++.
T Consensus 288 ~PvI~~~~~~--------~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 344 (353)
T cd03811 288 TPVVATDCPG--------PREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAAR 344 (353)
T ss_pred CCEEEcCCCC--------hHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 9999986541 345567778898887766 6777 6777788888888888887543
No 71
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=6.9e-13 Score=98.04 Aligned_cols=130 Identities=22% Similarity=0.214 Sum_probs=102.1
Q ss_pred eeEEEEcCc--ccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHH
Q 031484 15 LFIIWQTGV--EAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFK 92 (159)
Q Consensus 15 ~~~~~~~G~--~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~ 92 (159)
+.+.++.|. +....+.+.+...+++.++-...+|+++|..||++|+.+| .|++|++..|+|.++++.. .+|..
T Consensus 186 ~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaG-stlyEa~~lgvP~l~l~~a----~NQ~~ 260 (318)
T COG3980 186 VNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAG-STLYEALLLGVPSLVLPLA----ENQIA 260 (318)
T ss_pred eeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccc-hHHHHHHHhcCCceEEeee----ccHHH
Confidence 555566664 3456666666667899999999999999999999999555 7889999999999998875 67888
Q ss_pred HHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 031484 93 NASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIA 150 (159)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (159)
.++++...|....+... +........+.++..|+.+|+......+..+...+..+++
T Consensus 261 ~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i~dg~g~~rI~ 317 (318)
T COG3980 261 TAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNLSFGSKLIGDGRGFLRIA 317 (318)
T ss_pred HHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHhhhhhhccceeeccccceecc
Confidence 89999988876555433 3467788888899999999988887777777776666554
No 72
>PLN02562 UDP-glycosyltransferase
Probab=99.43 E-value=4.4e-12 Score=101.56 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=87.5
Q ss_pred CeeEEEEcCcc----cHHHHHHHhhcCCCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCCC
Q 031484 14 NLFIIWQTGVE----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVAE 87 (159)
Q Consensus 14 ~~~~~~~~G~~----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~ 87 (159)
+.+|+|+.... ..+.+++.. .+|+.+.+|.|+ .+++++.+ ++|||+|.+|++|++.+|+|+|++|..
T Consensus 303 g~~fiW~~~~~~~~~l~~~~~~~~--~~~~~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~---- 375 (448)
T PLN02562 303 GRPFIWVLNPVWREGLPPGYVERV--SKQGKVVSWAPQ-LEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVA---- 375 (448)
T ss_pred CCCEEEEEcCCchhhCCHHHHHHh--ccCEEEEecCCH-HHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcc----
Confidence 34788876432 112222222 357888899986 58898755 699999999999999999999999986
Q ss_pred chHHHHHHHHHHc-CceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHH
Q 031484 88 GHQFKNASLMAKL-ADSRIITEDELDSITLETTIEEILGNEALMAEMSERA 137 (159)
Q Consensus 88 ~~q~~~~~~~~~~-~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 137 (159)
.+|..|++.+.+. |.|+.+. +.+.+++.+++++++.++.+++..++-.
T Consensus 376 ~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r~~a~~l~ 424 (448)
T PLN02562 376 GDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMGERLMKLR 424 (448)
T ss_pred cchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6889999998764 7776663 4568999999999999988886554443
No 73
>PLN02210 UDP-glucosyl transferase
Probab=99.43 E-value=7.4e-12 Score=100.47 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=93.4
Q ss_pred CCeeEEEEcCcc----cHHHHHHHhhcCCCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCC
Q 031484 13 HNLFIIWQTGVE----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVA 86 (159)
Q Consensus 13 ~~~~~~~~~G~~----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~ 86 (159)
.+.+|+|+.++. ..+.+++... .++..+.+|.|+ .+++++++ ++|||+|.+|++|++.+|+|+|++|..
T Consensus 297 ~~~~flw~~~~~~~~~~~~~~~~~~~-~~~g~v~~w~PQ-~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~--- 371 (456)
T PLN02210 297 RGVPFLWVIRPKEKAQNVQVLQEMVK-EGQGVVLEWSPQ-EKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW--- 371 (456)
T ss_pred CCCCEEEEEeCCccccchhhHHhhcc-CCCeEEEecCCH-HHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc---
Confidence 466899987753 1233433322 244567899997 47898887 899999999999999999999999986
Q ss_pred CchHHHHHHHHHH-cCceeeecc----CCCChhHHHHHHHHHhcCHH---HH---HHHHHHHHhcCCC
Q 031484 87 EGHQFKNASLMAK-LADSRIITE----DELDSITLETTIEEILGNEA---LM---AEMSERALKAAKP 143 (159)
Q Consensus 87 ~~~q~~~~~~~~~-~~~g~~~~~----~~~~~~~l~~~l~~ll~~~~---~~---~~~~~~~~~~~~~ 143 (159)
.+|..|++++++ .|.|+.+.. +.++.+++.+++++++.+++ .| +++++.+++-...
T Consensus 372 -~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~ 438 (456)
T PLN02210 372 -TDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAP 438 (456)
T ss_pred -cccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 688999999987 799988753 24788999999999997754 33 3455555555433
No 74
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.42 E-value=8.8e-12 Score=99.82 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=73.3
Q ss_pred CCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHc-CceeeeccCCCCh
Q 031484 37 PRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKL-ADSRIITEDELDS 113 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~-~~g~~~~~~~~~~ 113 (159)
+|..+.+|.|+ .+++++.+ ++|||+|.+|++|++++|+|+|+.|.. .+|..|+.++++. |.|+.+. +.++.
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~DQ~~na~~~~~~~~~G~~~~-~~~~~ 397 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFS----SDQKVNARYLECVWKIGIQVE-GDLDR 397 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeeeecCchhHHHHHHHcCCCEEecccc----ccCHHHHHHHHHHhCeeEEeC-CcccH
Confidence 56788899986 57898744 499999999999999999999999986 6789999998876 8998875 56778
Q ss_pred hHHHHHHHHHhcCH
Q 031484 114 ITLETTIEEILGNE 127 (159)
Q Consensus 114 ~~l~~~l~~ll~~~ 127 (159)
+.+.+++++++.++
T Consensus 398 ~~v~~av~~lm~~~ 411 (451)
T PLN02410 398 GAVERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999775
No 75
>PLN00142 sucrose synthase
Probab=99.42 E-value=8.6e-12 Score=104.90 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=105.0
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcc------cH------HHHHHHhhc---CCCeEEecccc------cHHHHHh-hCceE
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVE------AF------NEMESLVRN---HPRLLLTPFLH------SMDLAYA-AADLI 58 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~------~~------~~l~~~~~~---~~~v~~~~~~~------~~~~~l~-~ad~~ 58 (159)
|+++|..+.+..+++++++++|.. .. .++.+++.. .++|.+.|+.. ++..+++ .+|++
T Consensus 591 LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVf 670 (815)
T PLN00142 591 LVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAF 670 (815)
T ss_pred HHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEE
Confidence 456676665556788998877651 11 223333332 35788887532 3455555 47999
Q ss_pred EecC----ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHH----hcCHHHH
Q 031484 59 VSRA----GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEI----LGNEALM 130 (159)
Q Consensus 59 i~~~----G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~l----l~~~~~~ 130 (159)
+..| .+.+++|||+||+|+|++...+ ..+.+.+...|+.+++.+ ++.+++++.++ +.|+..+
T Consensus 671 VlPS~~EgFGLvvLEAMA~GlPVVATdvGG--------~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 671 VQPALYEAFGLTVVEAMTCGLPTFATCQGG--------PAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred EeCCcccCCCHHHHHHHHcCCCEEEcCCCC--------HHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 8754 2689999999999999987642 344566677899998876 88888887654 5799999
Q ss_pred HHHHHHHHhcC-CCChHHHHHHHHHHhh
Q 031484 131 AEMSERALKAA-KPGASADIAQHILSLV 157 (159)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 157 (159)
++|++++++.. ...+|+..++.++++.
T Consensus 741 ~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 741 NKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999987765 5679999999988864
No 76
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.42 E-value=2.2e-12 Score=99.66 Aligned_cols=122 Identities=13% Similarity=0.115 Sum_probs=89.4
Q ss_pred HHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEeccccc--HHHHHhhCceEEecC---ChHHHHHHHHhCCcEEEec
Q 031484 7 QMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHS--MDLAYAAADLIVSRA---GAMTCYEILATGKPSILIP 81 (159)
Q Consensus 7 ~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~--~~~~l~~ad~~i~~~---G~~t~~Eal~~g~P~I~~p 81 (159)
+.++..+ +++++++++...+.+++ ...++|.+.|++++ +.++|+.||+++..+ .+.+++|||++|+|+|+++
T Consensus 215 ~a~~~~~-~~l~ivG~g~~~~~l~~--~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~ 291 (351)
T cd03804 215 EAFNKLG-KRLVVIGDGPELDRLRA--KAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYG 291 (351)
T ss_pred HHHHHCC-CcEEEEECChhHHHHHh--hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeC
Confidence 3344445 78876655444555554 23579999999974 899999999998643 2567899999999999986
Q ss_pred CCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCH-HHHHHHHHHHHhcC
Q 031484 82 SPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNE-ALMAEMSERALKAA 141 (159)
Q Consensus 82 ~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~-~~~~~~~~~~~~~~ 141 (159)
.++ ..+.+.+...|+.++.++ ++.+++++.++++|+ ..++.++++++++.
T Consensus 292 ~~~--------~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 342 (351)
T cd03804 292 KGG--------ALETVIDGVTGILFEEQT--VESLAAAVERFEKNEDFDPQAIRAHAERFS 342 (351)
T ss_pred CCC--------CcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcccCHHHHHHHHHhcC
Confidence 542 123455567898887766 889999999999988 56677777766553
No 77
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.42 E-value=1.8e-12 Score=99.36 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=103.5
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc-HHHHHH---HhhcCCCeEEecccc--cHHHHHhhCceEEecC----ChHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA-FNEMES---LVRNHPRLLLTPFLH--SMDLAYAAADLIVSRA----GAMTCYEIL 71 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~l~~---~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~~t~~Eal 71 (159)
++++..+...+++++++++++... .....+ ......+++++|+++ ++.++++.||+++..+ .+.+++|||
T Consensus 214 l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~ 293 (365)
T cd03809 214 LEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAM 293 (365)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHh
Confidence 456677777777788876654432 222222 122346899999994 7899999999998643 257799999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQ 151 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (159)
++|+|+|+.+.+.. .+.+. ..|..+..++ .+.+++++.++++|+..+..++++++......++++.++
T Consensus 294 a~G~pvI~~~~~~~--------~e~~~--~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~ 361 (365)
T cd03809 294 ACGTPVIASNISSL--------PEVAG--DAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARAKRFSWEKTAR 361 (365)
T ss_pred cCCCcEEecCCCCc--------cceec--CceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999765421 11222 3455666655 899999999999999999999999987777889999988
Q ss_pred HHH
Q 031484 152 HIL 154 (159)
Q Consensus 152 ~i~ 154 (159)
.+.
T Consensus 362 ~~~ 364 (365)
T cd03809 362 RTL 364 (365)
T ss_pred HHh
Confidence 765
No 78
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.42 E-value=1.1e-11 Score=104.09 Aligned_cols=146 Identities=12% Similarity=0.139 Sum_probs=104.0
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc------------HHHHHHHhhc---CCCeEEeccc-c--cHHHHHh----hCceEE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA------------FNEMESLVRN---HPRLLLTPFL-H--SMDLAYA----AADLIV 59 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~------------~~~l~~~~~~---~~~v~~~~~~-~--~~~~~l~----~ad~~i 59 (159)
+++|.++....+++++++++|+.. .+++.+++.. ..+|.++|+. + +..+++. .+|+++
T Consensus 569 IeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV 648 (784)
T TIGR02470 569 VECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFV 648 (784)
T ss_pred HHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEE
Confidence 455554433345688888777531 1233333332 3589999975 2 4555554 347888
Q ss_pred ecC----ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHh----cCHHHHH
Q 031484 60 SRA----GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEIL----GNEALMA 131 (159)
Q Consensus 60 ~~~----G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll----~~~~~~~ 131 (159)
..| .+.|++|||+||+|+|++...+ ..+.+.+...|+.+++.+ ++++++++.+++ .|+..++
T Consensus 649 ~PS~~EpFGLvvLEAMAcGlPVVAT~~GG--------~~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kll~dp~~~~ 718 (784)
T TIGR02470 649 QPALYEAFGLTVLEAMTCGLPTFATRFGG--------PLEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKCDEDPSYWQ 718 (784)
T ss_pred ECCcccCCCHHHHHHHHcCCCEEEcCCCC--------HHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHH
Confidence 655 3789999999999999987642 345566777899998877 899999999875 6999999
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHhh
Q 031484 132 EMSERALKAA-KPGASADIAQHILSLV 157 (159)
Q Consensus 132 ~~~~~~~~~~-~~~~~~~~~~~i~~~~ 157 (159)
+|++++.+.. ...+|+..++.++.+.
T Consensus 719 ~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 719 KISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999987765 5679999999888764
No 79
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.41 E-value=4.6e-12 Score=104.41 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=99.0
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCC-CeEEecccccHHHHHhhCceEEecC---C-hHHHHHHHHhCC
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHP-RLLLTPFLHSMDLAYAAADLIVSRA---G-AMTCYEILATGK 75 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~v~~~~~~~~~~~~l~~ad~~i~~~---G-~~t~~Eal~~g~ 75 (159)
|++++..+....+++++++++.++..+++++.+.... ++.++|+.++...+|+.+|+++..| | +.+++|||++|+
T Consensus 564 LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl 643 (794)
T PLN02501 564 LIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGK 643 (794)
T ss_pred HHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCC
Confidence 4567777777778999987765556777777654322 5788898888888999999999765 2 688999999999
Q ss_pred cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 76 PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 76 P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
|+|+...++ . ..+.+...|+.. ++ ++.+++++.+++.++..+..+.. ....+|+.+++.+++
T Consensus 644 PVVATd~pG----~-----e~V~~g~nGll~--~D--~EafAeAI~~LLsd~~~rl~~~a-----~~~~SWeAaadrLle 705 (794)
T PLN02501 644 FVVCADHPS----N-----EFFRSFPNCLTY--KT--SEDFVAKVKEALANEPQPLTPEQ-----RYNLSWEAATQRFME 705 (794)
T ss_pred CEEEecCCC----C-----ceEeecCCeEec--CC--HHHHHHHHHHHHhCchhhhHHHH-----HhhCCHHHHHHHHHH
Confidence 999987652 1 123333445433 33 89999999999998875543332 125578888888776
Q ss_pred h
Q 031484 156 L 156 (159)
Q Consensus 156 ~ 156 (159)
.
T Consensus 706 ~ 706 (794)
T PLN02501 706 Y 706 (794)
T ss_pred h
Confidence 5
No 80
>PHA01630 putative group 1 glycosyl transferase
Probab=99.40 E-value=8.6e-12 Score=96.39 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=94.6
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEeccc--ccHHHHHhhCceEEecC----ChHHHHHHHHhC
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFL--HSMDLAYAAADLIVSRA----GAMTCYEILATG 74 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~--~~~~~~l~~ad~~i~~~----G~~t~~Eal~~g 74 (159)
|++++..+.+..++++++++++.....++. ...+ +.++. +++.++|+.||+++..| .+.+++|||++|
T Consensus 160 Li~A~~~l~~~~~~~~llivG~~~~~~~l~----~~~~--~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G 233 (331)
T PHA01630 160 VVKIFHELQNEGYDFYFLIKSSNMLDPRLF----GLNG--VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALG 233 (331)
T ss_pred HHHHHHHHHhhCCCEEEEEEeCcccchhhc----cccc--eeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcC
Confidence 467787887777899987664332222211 1112 22223 47999999999999644 268899999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCc--------------------eeeeccCCCChhHHHHHHHHHhcC---HHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLAD--------------------SRIITEDELDSITLETTIEEILGN---EALMA 131 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~--------------------g~~~~~~~~~~~~l~~~l~~ll~~---~~~~~ 131 (159)
+|+|++...+. .+.+.+... |+.++. +.+.+++.+.+++.| +..++
T Consensus 234 ~PVIas~~gg~--------~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~---~~~~~~~~ii~~l~~~~~~~~~~ 302 (331)
T PHA01630 234 LDVVVTEKGAW--------SEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP---DIEDAYQKLLEALANWTPEKKKE 302 (331)
T ss_pred CCEEEeCCCCc--------hhhccCCCceEEeeecccccccccCCcccccccCC---CHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999875421 123333333 444333 257788888888876 45556
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhhC
Q 031484 132 EMSERALKAAKPGASADIAQHILSLVES 159 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 159 (159)
.+..++.......+++++++.+++++.+
T Consensus 303 ~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 303 NLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6666666666788999999999988753
No 81
>PLN02949 transferase, transferring glycosyl groups
Probab=99.39 E-value=4.7e-12 Score=101.79 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=103.7
Q ss_pred ChhhHHHHHhh----cCCeeEEEEcCcc---c---HHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecC---
Q 031484 1 MLNLYYQMLME----KHNLFIIWQTGVE---A---FNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRA--- 62 (159)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~G~~---~---~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~--- 62 (159)
++++|..+.+. .+++++++++|.. + .++++++++. ..+|.|.++.+ ++..+|+.||+++..+
T Consensus 286 lI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E 365 (463)
T PLN02949 286 QLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDE 365 (463)
T ss_pred HHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccC
Confidence 36677776543 4788988776642 1 2456665543 35899999984 7899999999998543
Q ss_pred -ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH---cCceeeeccCCCChhHHHHHHHHHhc-CHHHHHHHHHHH
Q 031484 63 -GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK---LADSRIITEDELDSITLETTIEEILG-NEALMAEMSERA 137 (159)
Q Consensus 63 -G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~---~~~g~~~~~~~~~~~~l~~~l~~ll~-~~~~~~~~~~~~ 137 (159)
.+.+++|||++|+|+|+.+..+.. .+.+.+ ...|+..+ +++.+++++.++++ ++..+++|++++
T Consensus 366 ~FGivvlEAMA~G~PVIa~~~gGp~-------~eIV~~~~~g~tG~l~~----~~~~la~ai~~ll~~~~~~r~~m~~~a 434 (463)
T PLN02949 366 HFGISVVEYMAAGAVPIAHNSAGPK-------MDIVLDEDGQQTGFLAT----TVEEYADAILEVLRMRETERLEIAAAA 434 (463)
T ss_pred CCChHHHHHHHcCCcEEEeCCCCCc-------ceeeecCCCCcccccCC----CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 267899999999999998764210 011221 22465553 38999999999998 578888999988
Q ss_pred HhcCCCChHHHHHHHHHHhh
Q 031484 138 LKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~~ 157 (159)
++.....+++++++.+.+.+
T Consensus 435 r~~~~~FS~e~~~~~~~~~i 454 (463)
T PLN02949 435 RKRANRFSEQRFNEDFKDAI 454 (463)
T ss_pred HHHHHHcCHHHHHHHHHHHH
Confidence 77766678888877776654
No 82
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.39 E-value=4.3e-12 Score=98.47 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=90.1
Q ss_pred CeeEEEEcCcccHHHHHHHhhc----CCCeEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCC
Q 031484 14 NLFIIWQTGVEAFNEMESLVRN----HPRLLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAE 87 (159)
Q Consensus 14 ~~~~~~~~G~~~~~~l~~~~~~----~~~v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~ 87 (159)
++.+++..++...+.+++.+.. .+++.+.++. .++..+|+.||++|+.||+ ...|++++|+|+|+++..
T Consensus 231 ~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sgg-i~~Ea~~~g~PvI~~~~~---- 305 (363)
T cd03786 231 DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGG-IQEEASFLGVPVLNLRDR---- 305 (363)
T ss_pred CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCcc-HHhhhhhcCCCEEeeCCC----
Confidence 4666554444334555554322 3588888654 4789999999999999994 468999999999998532
Q ss_pred chHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 031484 88 GHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHI 153 (159)
Q Consensus 88 ~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (159)
|. ...+.+.|.+..+.. + ++.+.+++.++++++..++.|+ ...++++++++++++.|
T Consensus 306 --~~--~~~~~~~g~~~~~~~-~--~~~i~~~i~~ll~~~~~~~~~~--~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 306 --TE--RPETVESGTNVLVGT-D--PEAILAAIEKLLSDEFAYSLMS--INPYGDGNASERIVEIL 362 (363)
T ss_pred --Cc--cchhhheeeEEecCC-C--HHHHHHHHHHHhcCchhhhcCC--CCCCCCCHHHHHHHHHh
Confidence 11 123455666655532 3 7899999999999998888876 66777888888888765
No 83
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.37 E-value=2.1e-11 Score=97.62 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=97.2
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCC-Ce-EEecccccHHHHHhhCceEEecCC----hHHHHHHHHhC
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHP-RL-LLTPFLHSMDLAYAAADLIVSRAG----AMTCYEILATG 74 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~v-~~~~~~~~~~~~l~~ad~~i~~~G----~~t~~Eal~~g 74 (159)
|++++..+....+++++++++.++..+++++.+...+ ++ .+.|+. +..++++.+|+++..|- +.+++|||++|
T Consensus 246 Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~-~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G 324 (462)
T PLN02846 246 LLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRD-HADPLFHDYKVFLNPSTTDVVCTTTAEALAMG 324 (462)
T ss_pred HHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCC-CHHHHHHhCCEEEECCCcccchHHHHHHHHcC
Confidence 4677777777778999887766667888888765432 23 355654 45679999999997652 68889999999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHIL 154 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
+|+|+...+. + +.+.+.+.|+.+. + .+.+++++.+++.++. +.++..++ ...+|+.+++.++
T Consensus 325 ~PVVa~~~~~--------~-~~v~~~~ng~~~~--~--~~~~a~ai~~~l~~~~--~~~~~~a~---~~~SWe~~~~~l~ 386 (462)
T PLN02846 325 KIVVCANHPS--------N-EFFKQFPNCRTYD--D--GKGFVRATLKALAEEP--APLTDAQR---HELSWEAATERFL 386 (462)
T ss_pred CcEEEecCCC--------c-ceeecCCceEecC--C--HHHHHHHHHHHHccCc--hhHHHHHH---HhCCHHHHHHHHH
Confidence 9999986541 1 3566667776663 3 7899999999997542 12222222 2568888888887
Q ss_pred Hhh
Q 031484 155 SLV 157 (159)
Q Consensus 155 ~~~ 157 (159)
++.
T Consensus 387 ~~~ 389 (462)
T PLN02846 387 RVA 389 (462)
T ss_pred HHh
Confidence 764
No 84
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.37 E-value=2.1e-11 Score=98.21 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=100.7
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc--cHHHHHHHhhcC-CCeEEeccc-c-cHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE--AFNEMESLVRNH-PRLLLTPFL-H-SMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~--~~~~l~~~~~~~-~~v~~~~~~-~-~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+.+. ++++++++++. ..++++++.... .++.+.+.. . .+..+|+.||+++..| .+.+.+|||+
T Consensus 310 i~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 387 (473)
T TIGR02095 310 LAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMR 387 (473)
T ss_pred HHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHH
Confidence 4556655543 48887664442 234555554333 467665543 3 4678999999999765 2578899999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHc------CceeeeccCCCChhHHHHHHHHHhc----CHHHHHHHHHHHHhcCC
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKL------ADSRIITEDELDSITLETTIEEILG----NEALMAEMSERALKAAK 142 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~------~~g~~~~~~~~~~~~l~~~l~~ll~----~~~~~~~~~~~~~~~~~ 142 (159)
+|+|+|+....+. .+.+.+. +.|+.++..+ ++++++++.+++. +++.+++|++++. ..
T Consensus 388 ~G~pvI~s~~gg~--------~e~v~~~~~~~~~~~G~l~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~ 455 (473)
T TIGR02095 388 YGTVPIVRRTGGL--------ADTVVDGDPEAESGTGFLFEEYD--PGALLAALSRALRLYRQDPSLWEALQKNAM--SQ 455 (473)
T ss_pred CCCCeEEccCCCc--------cceEecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHh--cc
Confidence 9999999866431 2233443 7898888776 8999999999887 8888888888764 35
Q ss_pred CChHHHHHHHHHHhhh
Q 031484 143 PGASADIAQHILSLVE 158 (159)
Q Consensus 143 ~~~~~~~~~~i~~~~~ 158 (159)
..+++++++.+.++..
T Consensus 456 ~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 456 DFSWDKSAKQYVELYR 471 (473)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 6789999988887654
No 85
>PLN00414 glycosyltransferase family protein
Probab=99.36 E-value=4.7e-11 Score=95.57 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=88.3
Q ss_pred cCCeeEEEEcCcc---------cHHHHHHHhhcCCCeEEecccccHHHHHhhC--ceEEecCChHHHHHHHHhCCcEEEe
Q 031484 12 KHNLFIIWQTGVE---------AFNEMESLVRNHPRLLLTPFLHSMDLAYAAA--DLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 12 ~~~~~~~~~~G~~---------~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~a--d~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
..+..|+|+.-+. ..+.+++.++ ..++.+.+|.|+ .++++++ +++|||+|.+|++|++.+|+|+|++
T Consensus 279 ~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~-~~g~vv~~w~PQ-~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 356 (446)
T PLN00414 279 LTGLPFLIAVMPPKGSSTVQEALPEGFEERVK-GRGIVWEGWVEQ-PLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFI 356 (446)
T ss_pred HcCCCeEEEEecCCCcccchhhCChhHHHHhc-CCCeEEeccCCH-HHHhcCCccceEEecCchhHHHHHHHcCCCEEec
Confidence 4555676765321 1223444443 246777799997 4889777 6699999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHH-HcCceeeeccC---CCChhHHHHHHHHHhcCH-HHHHHHHHHH
Q 031484 81 PSPNVAEGHQFKNASLMA-KLADSRIITED---ELDSITLETTIEEILGNE-ALMAEMSERA 137 (159)
Q Consensus 81 p~~~~~~~~q~~~~~~~~-~~~~g~~~~~~---~~~~~~l~~~l~~ll~~~-~~~~~~~~~~ 137 (159)
|.. .+|..|++++. ..|.|+.+..+ ..+.+.+.+++++++.++ +..+++++++
T Consensus 357 P~~----~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a 414 (446)
T PLN00414 357 PQL----ADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNH 414 (446)
T ss_pred Ccc----cchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHH
Confidence 985 68899999986 57999888542 378999999999999764 3334444444
No 86
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.35 E-value=4.3e-11 Score=96.70 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=76.8
Q ss_pred CCeEEecccccHHHHH--hhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHH-HHHcCceeeecc-----
Q 031484 37 PRLLLTPFLHSMDLAY--AAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASL-MAKLADSRIITE----- 108 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l--~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~-~~~~~~g~~~~~----- 108 (159)
+++.+.+|.|+ .+++ ..+.++|||+|.+|++|++.+|+|+|++|.. .+|..|+.. ++..|.|+.+..
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~----~DQ~~Na~~~v~~~g~Gv~l~~~~~~~ 416 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY----AEQKFNAFEMVEELGLAVEIRKYWRGD 416 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc----ccchhhHHHHHHHhCceEEeecccccc
Confidence 46778899986 5788 6777799999999999999999999999986 688999954 677899988752
Q ss_pred ------CCCChhHHHHHHHHHhc-CHHHHHHHHH
Q 031484 109 ------DELDSITLETTIEEILG-NEALMAEMSE 135 (159)
Q Consensus 109 ------~~~~~~~l~~~l~~ll~-~~~~~~~~~~ 135 (159)
+.++.+++.+++++++. ++.+++...+
T Consensus 417 ~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~ 450 (481)
T PLN02554 417 LLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKE 450 (481)
T ss_pred ccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 35678999999999996 7776654433
No 87
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.34 E-value=7.3e-11 Score=95.19 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=84.5
Q ss_pred CCeeEEEEcCccc---------HHHHHHHhhcCCCeEEecccccHHHHHhh--CceEEecCChHHHHHHHHhCCcEEEec
Q 031484 13 HNLFIIWQTGVEA---------FNEMESLVRNHPRLLLTPFLHSMDLAYAA--ADLIVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 13 ~~~~~~~~~G~~~---------~~~l~~~~~~~~~v~~~~~~~~~~~~l~~--ad~~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
.+..|+|++++.. .+.+.+.++ ..++.+.+|.|+ .+++++ ++++|+|+|.+|++|++++|+|+|++|
T Consensus 311 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ-~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 311 SGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-GRGLVIRGWAPQ-VAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CCCcEEEEECCCcccccchhhCCHHHHHHhc-cCCEEecCCCCH-HHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 5668889887421 122222222 347888899996 578876 789999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHH-cCceeeecc---CCCChhHHHHHHHHHh-cCHHHHH
Q 031484 82 SPNVAEGHQFKNASLMAK-LADSRIITE---DELDSITLETTIEEIL-GNEALMA 131 (159)
Q Consensus 82 ~~~~~~~~q~~~~~~~~~-~~~g~~~~~---~~~~~~~l~~~l~~ll-~~~~~~~ 131 (159)
.. .+|..|+.++.+ .|.|+.+.. ...+.+.+.+++.+++ .++.+|+
T Consensus 389 ~~----~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~ 439 (477)
T PLN02863 389 MA----ADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERE 439 (477)
T ss_pred cc----ccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHH
Confidence 85 688999998764 599987743 2235788999999988 5566554
No 88
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.34 E-value=6.7e-11 Score=95.13 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=81.9
Q ss_pred CCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEEEecCCCCCCchH
Q 031484 13 HNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSILIPSPNVAEGHQ 90 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q 90 (159)
.+..|+|+.... ...+.+.. ..++.+.+|.|+ .+++.+.++ +|||+|.+|++|++.+|+|+|++|.. .+|
T Consensus 302 ~~~~~lw~~~~~-~~~~~~~~--~~~~~v~~w~pQ-~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~----~DQ 373 (459)
T PLN02448 302 SGVRFLWVARGE-ASRLKEIC--GDMGLVVPWCDQ-LKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLF----WDQ 373 (459)
T ss_pred CCCCEEEEEcCc-hhhHhHhc--cCCEEEeccCCH-HHHhccCccceEEecCchhHHHHHHHcCCCEEecccc----ccc
Confidence 466888754432 12232222 246788899986 588988776 99999999999999999999999985 688
Q ss_pred HHHHHHHHHc-Cceeeecc-----CCCChhHHHHHHHHHhcCH
Q 031484 91 FKNASLMAKL-ADSRIITE-----DELDSITLETTIEEILGNE 127 (159)
Q Consensus 91 ~~~~~~~~~~-~~g~~~~~-----~~~~~~~l~~~l~~ll~~~ 127 (159)
..|+.++.+. |.|+.+.. +..+.+++.+++++++.++
T Consensus 374 ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 374 PLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred hhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 9999999874 88877642 2457899999999999864
No 89
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=1.8e-11 Score=94.32 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=93.8
Q ss_pred CeeEEEEcCcccH----HHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecC----C-hHHHHHHHHhCCcEEEecC
Q 031484 14 NLFIIWQTGVEAF----NEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRA----G-AMTCYEILATGKPSILIPS 82 (159)
Q Consensus 14 ~~~~~~~~G~~~~----~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G-~~t~~Eal~~g~P~I~~p~ 82 (159)
+++++++++.... +.+++.....++|+++|+++ ++..+++.||+++.++ | +.+++|||++|+|+|+++.
T Consensus 221 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~ 300 (363)
T cd04955 221 GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDN 300 (363)
T ss_pred CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecC
Confidence 6888766554222 22232233356899999985 5789999999988533 2 5789999999999999876
Q ss_pred CCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHhh
Q 031484 83 PNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK-PGASADIAQHILSLV 157 (159)
Q Consensus 83 ~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~ 157 (159)
+.. .+.+.+ .|..+...+ .+++.+.+++++++.++.+++++++... ..+++.+++.+++++
T Consensus 301 ~~~--------~e~~~~--~g~~~~~~~----~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 301 PFN--------REVLGD--KAIYFKVGD----DLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred Ccc--------ceeecC--CeeEecCch----HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 421 122222 455555443 2999999999999999999999888764 579999999988875
No 90
>PLN02208 glycosyltransferase family protein
Probab=99.34 E-value=2.6e-11 Score=96.92 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=78.1
Q ss_pred CCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-cCceeeeccCC---
Q 031484 37 PRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK-LADSRIITEDE--- 110 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~~--- 110 (159)
.++.+.+|.|+. +++++.. ++|||+|.+|++|++++|+|+|.+|.. .+|..|++.+.+ .|.|+.+..++
T Consensus 311 ~g~~v~~W~PQ~-~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~----~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQP-LILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFL----SDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCHH-HHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcc----hhhHHHHHHHHHHhceeEEeccccCCc
Confidence 578888999974 7887776 599999999999999999999999986 689999988776 79998886543
Q ss_pred CChhHHHHHHHHHhcCH-HHHHHHHHHH
Q 031484 111 LDSITLETTIEEILGNE-ALMAEMSERA 137 (159)
Q Consensus 111 ~~~~~l~~~l~~ll~~~-~~~~~~~~~~ 137 (159)
++.+.+.+++.+++.++ +..+++++++
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~ 413 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNH 413 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 78899999999999765 2334444443
No 91
>PRK14099 glycogen synthase; Provisional
Probab=99.34 E-value=3.8e-11 Score=97.13 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=99.3
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc--cHHHHHHHhhcC-CCe-EEecccccHHHHH-hhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE--AFNEMESLVRNH-PRL-LLTPFLHSMDLAY-AAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~--~~~~l~~~~~~~-~~v-~~~~~~~~~~~~l-~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+++ .++++++++++. ..+.++++.... .++ .+.||.+++.++| +.||+++..| .+.+.+|||+
T Consensus 314 i~A~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma 391 (485)
T PRK14099 314 LEALPTLLG--EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALR 391 (485)
T ss_pred HHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHH
Confidence 556666654 367886654332 244555554332 355 6889977888887 5799999755 2688999999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHc---------CceeeeccCCCChhHHHHHHHH---HhcCHHHHHHHHHHHHhc
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKL---------ADSRIITEDELDSITLETTIEE---ILGNEALMAEMSERALKA 140 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~---------~~g~~~~~~~~~~~~l~~~l~~---ll~~~~~~~~~~~~~~~~ 140 (159)
+|+|.|+....+..+ .+.+. ++|+.++..| ++.+++++.+ +++|+..+++|.+++.
T Consensus 392 ~G~ppVvs~~GGl~d--------~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai~~a~~l~~d~~~~~~l~~~~~-- 459 (485)
T PRK14099 392 YGAVPVVARVGGLAD--------TVVDANEMAIATGVATGVQFSPVT--ADALAAALRKTAALFADPVAWRRLQRNGM-- 459 (485)
T ss_pred CCCCcEEeCCCCccc--------eeecccccccccCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHhh--
Confidence 998888776543211 12221 5788888776 8999999987 6789998898988875
Q ss_pred CCCChHHHHHHHHHHhh
Q 031484 141 AKPGASADIAQHILSLV 157 (159)
Q Consensus 141 ~~~~~~~~~~~~i~~~~ 157 (159)
....+|+++++.++++.
T Consensus 460 ~~~fSw~~~a~~y~~lY 476 (485)
T PRK14099 460 TTDVSWRNPAQHYAALY 476 (485)
T ss_pred hhcCChHHHHHHHHHHH
Confidence 35678888888877653
No 92
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.33 E-value=2.6e-11 Score=96.97 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=85.6
Q ss_pred HHHHhhcCCeeEEEEcCcc----cHHHHHHHhhcCCCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEE
Q 031484 6 YQMLMEKHNLFIIWQTGVE----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSIL 79 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~ 79 (159)
.++.....+..|+|+.... ..+.+.+... ..++.+.+|.|+ .+++++.+ ++|||+|.+|++|++.+|+|+|+
T Consensus 283 ~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~-~~~~~i~~W~PQ-~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 283 EEIASAISNFSYLWVVRASEESKLPPGFLETVD-KDKSLVLKWSPQ-LQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred HHHHHHhcCCCEEEEEeccchhcccchHHHhhc-CCceEEeCCCCH-HHHhCCCccceEEecCccchHHHHHHcCCCEEe
Confidence 3344444455577766421 1112222221 357888899996 47888866 89999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHc-CceeeeccC----CCChhHHHHHHHHHhcCHH
Q 031484 80 IPSPNVAEGHQFKNASLMAKL-ADSRIITED----ELDSITLETTIEEILGNEA 128 (159)
Q Consensus 80 ~p~~~~~~~~q~~~~~~~~~~-~~g~~~~~~----~~~~~~l~~~l~~ll~~~~ 128 (159)
.|.. .+|..|+.++++. |.|+.+..+ -.+.+.+.+++++++.+++
T Consensus 361 ~P~~----~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 361 MPQW----TDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK 410 (449)
T ss_pred cCch----hcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh
Confidence 9986 6889999999876 888776432 1468999999999997653
No 93
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.32 E-value=6.1e-11 Score=95.89 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=82.2
Q ss_pred CCeeEEEEcCccc---------HHHHHHHhhcCCCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEEEec
Q 031484 13 HNLFIIWQTGVEA---------FNEMESLVRNHPRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 13 ~~~~~~~~~G~~~---------~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
.+..|+|+.++.. .+.+.++.. ..++.+.+|.|+ .++++++++ +|||+|.+|++|++++|+|+|++|
T Consensus 313 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 313 SGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQ-VLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred CCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCH-HHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 5678999877521 112322222 458899999997 588988765 999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHH---cCceeee------ccCCCChhHHHHHHHHHhcCH
Q 031484 82 SPNVAEGHQFKNASLMAK---LADSRII------TEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 82 ~~~~~~~~q~~~~~~~~~---~~~g~~~------~~~~~~~~~l~~~l~~ll~~~ 127 (159)
.. .+|..|+.++.+ .|.++.. ..+.++.+++.+++++++.++
T Consensus 391 ~~----~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 391 VG----AEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ch----hhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc
Confidence 85 688999987763 3444321 234567899999999999876
No 94
>PLN02764 glycosyltransferase family protein
Probab=99.31 E-value=7.7e-11 Score=94.27 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=76.5
Q ss_pred CCeEEecccccHHHHHhh--CceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-cCceeeeccC---C
Q 031484 37 PRLLLTPFLHSMDLAYAA--ADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK-LADSRIITED---E 110 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~--ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~---~ 110 (159)
.++.+.+|.|+ .+++++ +.++|||+|.+|++|++.+|+|+|++|.. .+|..|++++.+ .|.|+.+..+ +
T Consensus 317 rG~v~~~W~PQ-~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~----~DQ~~na~~l~~~~g~gv~~~~~~~~~ 391 (453)
T PLN02764 317 RGVVWGGWVQQ-PLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL----GDQVLNTRLLSDELKVSVEVAREETGW 391 (453)
T ss_pred CCcEEeCCCCH-HHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc----cchHHHHHHHHHHhceEEEeccccCCc
Confidence 46788899997 478877 56699999999999999999999999985 689999999864 6888776432 4
Q ss_pred CChhHHHHHHHHHhcCH-HHHHHHHHHH
Q 031484 111 LDSITLETTIEEILGNE-ALMAEMSERA 137 (159)
Q Consensus 111 ~~~~~l~~~l~~ll~~~-~~~~~~~~~~ 137 (159)
++.+++.+++.+++.++ +..+.+++++
T Consensus 392 ~~~e~i~~av~~vm~~~~~~g~~~r~~a 419 (453)
T PLN02764 392 FSKESLRDAINSVMKRDSEIGNLVKKNH 419 (453)
T ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 68999999999999875 3334444443
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.31 E-value=7.1e-11 Score=95.13 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=98.7
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcc--cHHHHHHHhhcC-CCeE-Eeccccc-HHHHHhhCceEEecC----ChHHHHHHH
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVE--AFNEMESLVRNH-PRLL-LTPFLHS-MDLAYAAADLIVSRA----GAMTCYEIL 71 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~--~~~~l~~~~~~~-~~v~-~~~~~~~-~~~~l~~ad~~i~~~----G~~t~~Eal 71 (159)
|++++..+.+. ++++++++++. ..++++++.+.. .++. +.+|..+ .+.+|+.||+++..| .+.+.+|||
T Consensus 300 li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAm 377 (466)
T PRK00654 300 VLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYAL 377 (466)
T ss_pred HHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHH
Confidence 35666666543 78887764432 234566555433 3554 4577544 568899999999765 267899999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHc------CceeeeccCCCChhHHHHHHHHHhc---CHHHHHHHHHHHHhcCC
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKL------ADSRIITEDELDSITLETTIEEILG---NEALMAEMSERALKAAK 142 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~------~~g~~~~~~~~~~~~l~~~l~~ll~---~~~~~~~~~~~~~~~~~ 142 (159)
++|+|+|+....+.. +.+.+. +.|+.++..+ ++++++++.++++ ++..+++|.+++.. .
T Consensus 378 a~G~p~V~~~~gG~~--------e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~ 445 (466)
T PRK00654 378 RYGTLPIVRRTGGLA--------DTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRALELYRQPPLWRALQRQAMA--Q 445 (466)
T ss_pred HCCCCEEEeCCCCcc--------ceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--c
Confidence 999999998664321 223333 7899998776 8999999998876 67767777776642 4
Q ss_pred CChHHHHHHHHHHhh
Q 031484 143 PGASADIAQHILSLV 157 (159)
Q Consensus 143 ~~~~~~~~~~i~~~~ 157 (159)
..+++++++.+.++.
T Consensus 446 ~fsw~~~a~~~~~lY 460 (466)
T PRK00654 446 DFSWDKSAEEYLELY 460 (466)
T ss_pred CCChHHHHHHHHHHH
Confidence 568888888877654
No 96
>PLN00164 glucosyltransferase; Provisional
Probab=99.31 E-value=1.2e-10 Score=94.08 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=72.5
Q ss_pred CCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-cCceeeeccC----
Q 031484 37 PRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK-LADSRIITED---- 109 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~---- 109 (159)
.++.+.+|.|+ ..++.+++ ++|||+|.+|++|++.+|+|+|+.|.. .+|..|+.++.+ .|+|+.+..+
T Consensus 339 ~g~~v~~w~PQ-~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvG~~~~~~~~~~ 413 (480)
T PLN00164 339 RGLVWPTWAPQ-KEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLY----AEQHLNAFELVADMGVAVAMKVDRKRD 413 (480)
T ss_pred CCeEEeecCCH-HHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcc----ccchhHHHHHHHHhCeEEEeccccccC
Confidence 46778899986 58888877 699999999999999999999999986 688999988754 6999877421
Q ss_pred -CCChhHHHHHHHHHhcCHH
Q 031484 110 -ELDSITLETTIEEILGNEA 128 (159)
Q Consensus 110 -~~~~~~l~~~l~~ll~~~~ 128 (159)
..+.+.+.+++.+++.+++
T Consensus 414 ~~~~~e~l~~av~~vm~~~~ 433 (480)
T PLN00164 414 NFVEAAELERAVRSLMGGGE 433 (480)
T ss_pred CcCcHHHHHHHHHHHhcCCc
Confidence 2578999999999997653
No 97
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.31 E-value=2e-10 Score=92.59 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=74.9
Q ss_pred CCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHH-HcCceeeecc--CCC
Q 031484 37 PRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMA-KLADSRIITE--DEL 111 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~-~~~~g~~~~~--~~~ 111 (159)
.++.+.+|.|+ .+++++..+ +|||+|.+|++|++.+|+|+|++|.. .+|..|+.++. +.|.|+.+.. +.+
T Consensus 338 rg~vv~~W~PQ-~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~----~DQ~~na~~~~~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 338 RGFVVPSWAPQ-AEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF----AEQNMNAALLSDELGIAVRSDDPKEVI 412 (481)
T ss_pred CCEEEeecCCH-HHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc----chhHHHHHHHHHHhCeeEEecCCCCcc
Confidence 47899999996 478888775 99999999999999999999999986 78999999985 8899988865 347
Q ss_pred ChhHHHHHHHHHhcCH
Q 031484 112 DSITLETTIEEILGNE 127 (159)
Q Consensus 112 ~~~~l~~~l~~ll~~~ 127 (159)
+.+.+.+++.+++.++
T Consensus 413 ~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 413 SRSKIEALVRKVMVEE 428 (481)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 8999999999999764
No 98
>PLN02207 UDP-glycosyltransferase
Probab=99.30 E-value=1.5e-10 Score=92.97 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCeeEEEEcCcccH-------HHHHHHhhcCCCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEEEecCC
Q 031484 13 HNLFIIWQTGVEAF-------NEMESLVRNHPRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 13 ~~~~~~~~~G~~~~-------~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+.+|+|+...... +.+++.. ..+..+.+|.|+ .+++++..+ +|||+|.+|++|++.+|+|+|..|..
T Consensus 303 ~~~~flW~~r~~~~~~~~~lp~~f~er~--~~~g~i~~W~PQ-~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 303 CQYRFLWSLRTEEVTNDDLLPEGFLDRV--SGRGMICGWSPQ-VEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred CCCcEEEEEeCCCccccccCCHHHHhhc--CCCeEEEEeCCH-HHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 45588887764211 2333322 346678899997 478887555 99999999999999999999999985
Q ss_pred CCCCchHHHHHHHHHH-cCceeeec------c-CCCChhHHHHHHHHHhc--CHHHHHHH
Q 031484 84 NVAEGHQFKNASLMAK-LADSRIIT------E-DELDSITLETTIEEILG--NEALMAEM 133 (159)
Q Consensus 84 ~~~~~~q~~~~~~~~~-~~~g~~~~------~-~~~~~~~l~~~l~~ll~--~~~~~~~~ 133 (159)
.+|..|++++++ .|.|+.+. . +..+.+++.+++++++. ++.+|+.+
T Consensus 380 ----~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a 435 (468)
T PLN02207 380 ----AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRV 435 (468)
T ss_pred ----ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHH
Confidence 789999998776 78887552 1 22468899999999996 45655433
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.30 E-value=4.4e-11 Score=95.18 Aligned_cols=138 Identities=10% Similarity=0.093 Sum_probs=93.8
Q ss_pred ChhhHHHHHhhcC-----CeeEEEEcCcc------cHHHHHHHhhc---CCCeEEecccc--cHHHHHhhCceEEecC--
Q 031484 1 MLNLYYQMLMEKH-----NLFIIWQTGVE------AFNEMESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVSRA-- 62 (159)
Q Consensus 1 ~~~~~~~~~~~~~-----~~~~~~~~G~~------~~~~l~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~~~-- 62 (159)
++++|..+.+..+ ++++++++|.. ..++++++++. .++|+++++++ ++..+|+.||+++..+
T Consensus 255 li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~ 334 (419)
T cd03806 255 QLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWN 334 (419)
T ss_pred HHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCcc
Confidence 3677887777665 48888776542 23455555433 35899999875 7999999999988643
Q ss_pred --ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHH---HcCceeeeccCCCChhHHHHHHHHHhcCHH-HHHHHHHH
Q 031484 63 --GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMA---KLADSRIITEDELDSITLETTIEEILGNEA-LMAEMSER 136 (159)
Q Consensus 63 --G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~---~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~-~~~~~~~~ 136 (159)
.+.+++|||++|+|+|+....+ . ..+.+. +..+|+.+. + ++++++++.++++++. .++.+..+
T Consensus 335 E~Fgi~~lEAMa~G~pvIa~~~gg----p---~~~iv~~~~~g~~G~l~~--d--~~~la~ai~~ll~~~~~~~~~~~~~ 403 (419)
T cd03806 335 EHFGIGVVEYMAAGLIPLAHASGG----P---LLDIVVPWDGGPTGFLAS--T--AEEYAEAIEKILSLSEEERLRIRRA 403 (419)
T ss_pred CCcccHHHHHHHcCCcEEEEcCCC----C---chheeeccCCCCceEEeC--C--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2678899999999999886532 1 112233 456787753 3 8999999999998654 55555555
Q ss_pred HHhcCCCChHHHH
Q 031484 137 ALKAAKPGASADI 149 (159)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (159)
.++.....+.+..
T Consensus 404 ~~~~~~~fs~~~f 416 (419)
T cd03806 404 ARSSVKRFSDEEF 416 (419)
T ss_pred HHHHHHhhCHHHh
Confidence 5544344454443
No 100
>PRK14098 glycogen synthase; Provisional
Probab=99.29 E-value=1.1e-10 Score=94.50 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=99.7
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc--cHHHHHHHhhcC-CCeEEecccc--cHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE--AFNEMESLVRNH-PRLLLTPFLH--SMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~--~~~~l~~~~~~~-~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+.. +++++++++++. ..+.++++.+.. .++.+.++.+ .++.+|+.||+++..| .+.+.+|||+
T Consensus 326 i~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma 403 (489)
T PRK14098 326 AESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMS 403 (489)
T ss_pred HHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHh
Confidence 455666553 478887654333 235666655433 5798988775 4689999999999755 2678899999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCChHHHH
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEIL---GNEALMAEMSERALKAAKPGASADI 149 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll---~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (159)
+|+|+|+....+..+. . .+...+.+.|++++..+ ++.+++++.+++ +|+..++++..++ .....++++.
T Consensus 404 ~G~ppVv~~~GGl~d~--v--~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~~~~~~~~--~~~~fsw~~~ 475 (489)
T PRK14098 404 YGTIPVAYAGGGIVET--I--EEVSEDKGSGFIFHDYT--PEALVAKLGEALALYHDEERWEELVLEA--MERDFSWKNS 475 (489)
T ss_pred CCCCeEEecCCCCcee--e--ecCCCCCCceeEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHH--hcCCCChHHH
Confidence 9999998865432110 0 01111257898888776 899999998764 6787777776654 2356788888
Q ss_pred HHHHHHhh
Q 031484 150 AQHILSLV 157 (159)
Q Consensus 150 ~~~i~~~~ 157 (159)
++.+.++.
T Consensus 476 a~~y~~lY 483 (489)
T PRK14098 476 AEEYAQLY 483 (489)
T ss_pred HHHHHHHH
Confidence 88887754
No 101
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.29 E-value=1.6e-10 Score=93.30 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=82.1
Q ss_pred CCeeEEEEcCccc----------HHHHHHHhhcCCCeEEecccccHHHHHhh--CceEEecCChHHHHHHHHhCCcEEEe
Q 031484 13 HNLFIIWQTGVEA----------FNEMESLVRNHPRLLLTPFLHSMDLAYAA--ADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 13 ~~~~~~~~~G~~~----------~~~l~~~~~~~~~v~~~~~~~~~~~~l~~--ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
.+.+|+|+.+... .+.+++.+ ..+..+.+|.|+ ..++++ ++++|||+|.+|++|++++|+|+|+.
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~lp~~~~er~--~~rg~v~~w~PQ-~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEPLPEGFMDRV--MGRGLVCGWAPQ-VEILAHKAIGGFVSHCGWNSVLESLWFGVPIATW 384 (475)
T ss_pred CCCcEEEEEecCcccccchhhhCChHHHHHh--ccCeeeeccCCH-HHHhcCcccCeEEeeCCcccHHHHHHcCCCEEec
Confidence 4568888876321 11222222 124467799986 578877 56799999999999999999999999
Q ss_pred cCCCCCCchHHHHHHH-HHHcCceeeecc-------CCCChhHHHHHHHHHhcCH-HHHH
Q 031484 81 PSPNVAEGHQFKNASL-MAKLADSRIITE-------DELDSITLETTIEEILGNE-ALMA 131 (159)
Q Consensus 81 p~~~~~~~~q~~~~~~-~~~~~~g~~~~~-------~~~~~~~l~~~l~~ll~~~-~~~~ 131 (159)
|.. .+|..|+.+ +...|.|+.+.. +..+.+.+.+++++++.++ .+++
T Consensus 385 P~~----~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~ 440 (475)
T PLN02167 385 PMY----AEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRK 440 (475)
T ss_pred ccc----ccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHH
Confidence 986 688999976 567899987753 2357899999999999754 4443
No 102
>PLN02275 transferase, transferring glycosyl groups
Probab=99.28 E-value=8.1e-11 Score=92.16 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=75.6
Q ss_pred hcCCeeEEEEcCcccHHHHHHHhhc--CCCeEEec-cc--ccHHHHHhhCceEEec----CC---hHHHHHHHHhCCcEE
Q 031484 11 EKHNLFIIWQTGVEAFNEMESLVRN--HPRLLLTP-FL--HSMDLAYAAADLIVSR----AG---AMTCYEILATGKPSI 78 (159)
Q Consensus 11 ~~~~~~~~~~~G~~~~~~l~~~~~~--~~~v~~~~-~~--~~~~~~l~~ad~~i~~----~G---~~t~~Eal~~g~P~I 78 (159)
.+|++++++++++...+++++.++. .+++.+++ |. ++++.+|+.||+++.. .| +++++|||++|+|+|
T Consensus 258 ~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVV 337 (371)
T PLN02275 258 LYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC 337 (371)
T ss_pred cCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEE
Confidence 3588999776655667778776653 35677766 55 4799999999999841 12 578999999999999
Q ss_pred EecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHh
Q 031484 79 LIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEIL 124 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll 124 (159)
++... + ..+.+.+.++|++++ + ++++++++.+++
T Consensus 338 a~~~g----g----~~eiv~~g~~G~lv~--~--~~~la~~i~~l~ 371 (371)
T PLN02275 338 AVSYS----C----IGELVKDGKNGLLFS--S--SSELADQLLELL 371 (371)
T ss_pred EecCC----C----hHHHccCCCCeEEEC--C--HHHHHHHHHHhC
Confidence 98643 1 345566677899886 3 789999988764
No 103
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.25 E-value=8.4e-11 Score=91.18 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=90.9
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecC
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPS 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~ 82 (159)
++...+.+.+ .++ ++.+....+.+++.+.....+.+. ++..++|+.||++++.||+.|+ |++.+|+|+|+. +
T Consensus 190 ~aa~~L~~~~--~~~-~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~m~~aDlal~~SGT~TL-E~al~g~P~Vv~-Y 261 (347)
T PRK14089 190 ELAKKLEGKE--KIL-VVPSFFKGKDLKEIYGDISEFEIS---YDTHKALLEAEFAFICSGTATL-EAALIGTPFVLA-Y 261 (347)
T ss_pred HHHHHHhhcC--cEE-EEeCCCcHHHHHHHHhcCCCcEEe---ccHHHHHHhhhHHHhcCcHHHH-HHHHhCCCEEEE-E
Confidence 4444444332 444 445555445555544332334444 3678999999999999999996 999999999984 3
Q ss_pred CCCCCchHHHHHHHHHHc---Cceeee-------------ccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 031484 83 PNVAEGHQFKNASLMAKL---ADSRII-------------TEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGAS 146 (159)
Q Consensus 83 ~~~~~~~q~~~~~~~~~~---~~g~~~-------------~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
. ....++.+++.+.+. |..-++ -+++.+++.+++.+.+. +.+...++....++....+++
T Consensus 262 k--~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~--~~~~~~~~~~~l~~~l~~~a~ 337 (347)
T PRK14089 262 K--AKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM--DREKFFKKSKELREYLKHGSA 337 (347)
T ss_pred e--CCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCHH
Confidence 2 346788888888732 222222 34678899999999882 233333444444444345888
Q ss_pred HHHHHHHHHh
Q 031484 147 ADIAQHILSL 156 (159)
Q Consensus 147 ~~~~~~i~~~ 156 (159)
+++++.+.++
T Consensus 338 ~~~A~~i~~~ 347 (347)
T PRK14089 338 KNVAKILKEL 347 (347)
T ss_pred HHHHHHHhcC
Confidence 9999888753
No 104
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.25 E-value=9e-12 Score=83.73 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=71.2
Q ss_pred hh-hHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecC-----ChHHHHHHHHhCC
Q 031484 2 LN-LYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRA-----GAMTCYEILATGK 75 (159)
Q Consensus 2 ~~-~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~-----G~~t~~Eal~~g~ 75 (159)
++ ++.++.+++|++++.++++... ++++. ..++|+++++++++.++++.||+++... .+++++|++++|+
T Consensus 21 i~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~--~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~ 96 (135)
T PF13692_consen 21 IEAALERLKEKHPDIELIIIGNGPD--ELKRL--RRPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK 96 (135)
T ss_dssp HH-HHHHHHHHSTTEEEEEECESS---HHCCH--HHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT-
T ss_pred hhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh--cCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC
Confidence 45 6777888889999976544333 34433 2469999999999999999999998632 2578999999999
Q ss_pred cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC
Q 031484 76 PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGN 126 (159)
Q Consensus 76 P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~ 126 (159)
|+|+.+.+ ........+.+..+ .++ ++++++++.++++|
T Consensus 97 pvi~~~~~---------~~~~~~~~~~~~~~-~~~--~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 97 PVIASDNG---------AEGIVEEDGCGVLV-AND--PEELAEAIERLLND 135 (135)
T ss_dssp -EEEEHHH---------CHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred CEEECCcc---------hhhheeecCCeEEE-CCC--HHHHHHHHHHHhcC
Confidence 99998541 12233445677666 444 89999999999865
No 105
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.24 E-value=3.8e-10 Score=90.47 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=77.3
Q ss_pred CCCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHc-Cceeeec--cC-
Q 031484 36 HPRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKL-ADSRIIT--ED- 109 (159)
Q Consensus 36 ~~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~-~~g~~~~--~~- 109 (159)
.++..+.+|.|+. +++++.. ++|||+|.+|++|++.+|+|+|++|.. .+|..|+..+++. |.|+.+. .+
T Consensus 326 ~~~g~v~~W~PQ~-~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQI-EVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW----SDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCHH-HHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc----ccchHHHHHHHHHhCceEEeecCcCC
Confidence 3567888999974 7888877 599999999999999999999999985 6889999998873 5555543 22
Q ss_pred CCChhHHHHHHHHHhcCHH--HH---HHHHHHHHhcC
Q 031484 110 ELDSITLETTIEEILGNEA--LM---AEMSERALKAA 141 (159)
Q Consensus 110 ~~~~~~l~~~l~~ll~~~~--~~---~~~~~~~~~~~ 141 (159)
..+.+++.+++.+++.++. .| .++++.+++..
T Consensus 401 ~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~ 437 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAG 437 (455)
T ss_pred cCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999997654 23 23345555444
No 106
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.24 E-value=3.5e-10 Score=91.48 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=98.8
Q ss_pred HHHHHhhcCCeeEEEEcCcccHHHHHHHhh--cCCCeEEecccccHHHHH--hhCceEEecCChHHHHHHHHhCCcEEEe
Q 031484 5 YYQMLMEKHNLFIIWQTGVEAFNEMESLVR--NHPRLLLTPFLHSMDLAY--AAADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~l--~~ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
+...++..+++.|+|..-+.....+.+... ..++|.+.+|.|+..-++ ....++|||+|.++++|++.+|+|+|.+
T Consensus 301 l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~ 380 (496)
T KOG1192|consen 301 LAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCV 380 (496)
T ss_pred HHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecC
Confidence 344445556778888777643221211111 134788889999864432 3467899999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 031484 81 PSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA 141 (159)
Q Consensus 81 p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~ 141 (159)
|.. ++|..|+..+++.|.+.+....+.+...+.+++.+++.++++.+..++-+..+.
T Consensus 381 Plf----~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 381 PLF----GDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILR 437 (496)
T ss_pred Ccc----ccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 986 789999999999988877666555555589999999999999887777777654
No 107
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.24 E-value=1.4e-10 Score=90.81 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=87.9
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecC--------C-hHHHHHHH
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRA--------G-AMTCYEIL 71 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~--------G-~~t~~Eal 71 (159)
+.+.++.+.+|+++++++++.....+..+ ....+||+++|+.+ +++.+++.+|+++... + ++.++|+|
T Consensus 221 ~ll~~la~~~p~~~~vliG~~~~~~~~~~-~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~Eyl 299 (373)
T cd04950 221 ELLEALAKARPDWSFVLIGPVDVSIDPSA-LLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYL 299 (373)
T ss_pred HHHHHHHHHCCCCEEEEECCCcCccChhH-hccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHh
Confidence 45667777889999987655412222222 22347999999985 7999999999998532 1 46689999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHH-HHHHHHHHHHhcCCCChHHHHH
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEA-LMAEMSERALKAAKPGASADIA 150 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (159)
++|+|+|.++.+ +.....+.++.. .++ ++++++++.+++.++. .+.+... +....++|+..+
T Consensus 300 A~G~PVVat~~~-----------~~~~~~~~~~~~-~~d--~~~~~~ai~~~l~~~~~~~~~~~~---~~~~~~sW~~~a 362 (373)
T cd04950 300 AAGKPVVATPLP-----------EVRRYEDEVVLI-ADD--PEEFVAAIEKALLEDGPARERRRL---RLAAQNSWDARA 362 (373)
T ss_pred ccCCCEEecCcH-----------HHHhhcCcEEEe-CCC--HHHHHHHHHHHHhcCCchHHHHHH---HHHHHCCHHHHH
Confidence 999999987542 111222333333 333 8999999999765432 2222111 144566788888
Q ss_pred HHHHHh
Q 031484 151 QHILSL 156 (159)
Q Consensus 151 ~~i~~~ 156 (159)
+.+...
T Consensus 363 ~~~~~~ 368 (373)
T cd04950 363 AEMLEA 368 (373)
T ss_pred HHHHHH
Confidence 777744
No 108
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.23 E-value=3.8e-10 Score=90.68 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=99.3
Q ss_pred ChhhHHHHHhhcCCe----eEEEEcCc-----ccHHHHHHHhhc----------C---CCeEE-eccc--ccHHHHHhhC
Q 031484 1 MLNLYYQMLMEKHNL----FIIWQTGV-----EAFNEMESLVRN----------H---PRLLL-TPFL--HSMDLAYAAA 55 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~G~-----~~~~~l~~~~~~----------~---~~v~~-~~~~--~~~~~~l~~a 55 (159)
++++|..+++++|++ .+++++|+ ..+.++++.++. . ..+.+ .++. .++..+|+.|
T Consensus 277 ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aa 356 (456)
T TIGR02400 277 RLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAA 356 (456)
T ss_pred HHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhC
Confidence 368899999998875 35555433 123444333311 0 12333 3444 4799999999
Q ss_pred ceEEecC---C-hHHHHHHHHhCCc----EEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc-C
Q 031484 56 DLIVSRA---G-AMTCYEILATGKP----SILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG-N 126 (159)
Q Consensus 56 d~~i~~~---G-~~t~~Eal~~g~P----~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~-~ 126 (159)
|+++..| | +.++.|+|+||+| +|++...+. ++.+ +.|+.+++.| ++.+++++.+++. +
T Consensus 357 Dv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~--------~~~l---~~gllVnP~d--~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 357 DVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA--------AQEL---NGALLVNPYD--IDGMADAIARALTMP 423 (456)
T ss_pred cEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC--------hHHh---CCcEEECCCC--HHHHHHHHHHHHcCC
Confidence 9999755 4 6789999999999 888866531 1223 2678888776 8999999999998 5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHhhhC
Q 031484 127 EALMAEMSERALKAAKPGASADIAQHILSLVES 159 (159)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 159 (159)
+..+++..+.+++....+....-++..++-+.|
T Consensus 424 ~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 424 LEEREERHRAMMDKLRKNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhC
Confidence 566676777677766667777777776655543
No 109
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=4.5e-10 Score=86.91 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=114.2
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc-cHHHHH-HHhhcCCCeEEecccc--cHHHHHhhCceEEecCChHHHHHHHHhCCcE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE-AFNEME-SLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~-~~~~l~-~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
.+++.+++..++++.++...-+. ...++. ..+++.+++++++-.+ ++..+|..|-++++.||+.. -||-.+|+|+
T Consensus 225 ~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSGgiq-EEAp~lg~Pv 303 (383)
T COG0381 225 CEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDSGGIQ-EEAPSLGKPV 303 (383)
T ss_pred HHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecCCchh-hhHHhcCCcE
Confidence 46778899999999998877765 223333 3345566899887664 68899999999999999765 7999999999
Q ss_pred EEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Q 031484 78 ILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 78 I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (159)
+++... -++ .+ ..+.|..+.+..+ .+.+.+++.+++.+++.+++|+.....++.+++++++++.|....
T Consensus 304 l~lR~~----TER---PE-~v~agt~~lvg~~---~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~ 372 (383)
T COG0381 304 LVLRDT----TER---PE-GVEAGTNILVGTD---EENILDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILLNYF 372 (383)
T ss_pred EeeccC----CCC---cc-ceecCceEEeCcc---HHHHHHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHHHHHh
Confidence 998654 121 22 3445666667654 689999999999999999999999999999999999999998865
Q ss_pred h
Q 031484 158 E 158 (159)
Q Consensus 158 ~ 158 (159)
+
T Consensus 373 ~ 373 (383)
T COG0381 373 D 373 (383)
T ss_pred h
Confidence 4
No 110
>PHA01633 putative glycosyl transferase group 1
Probab=99.21 E-value=2.4e-10 Score=88.19 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=92.3
Q ss_pred ChhhHHHHHhhcCCe----eEEEEcCcccHHHHHHHhhcCCCeEEec---cc--ccHHHHHhhCceEEecC---C-hHHH
Q 031484 1 MLNLYYQMLMEKHNL----FIIWQTGVEAFNEMESLVRNHPRLLLTP---FL--HSMDLAYAAADLIVSRA---G-AMTC 67 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~G~~~~~~l~~~~~~~~~v~~~~---~~--~~~~~~l~~ad~~i~~~---G-~~t~ 67 (159)
|++++..+.+++|++ +++++ |.. .+++ .....++.+.+ +. .++.++|+.||+++..| | +.++
T Consensus 166 LI~A~~~L~~~~p~~~~~i~l~iv-G~~---~~~~-l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvl 240 (335)
T PHA01633 166 MLQVFNELNTKYPDIAKKIHFFVI-SHK---QFTQ-LEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPV 240 (335)
T ss_pred HHHHHHHHHHhCCCccccEEEEEE-cHH---HHHH-cCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHH
Confidence 467888887777754 55444 532 2222 22245899885 33 36899999999999765 2 7889
Q ss_pred HHHHHhCCcEEEecCCCCCC---c-h----HHHHHHHHH--HcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHH
Q 031484 68 YEILATGKPSILIPSPNVAE---G-H----QFKNASLMA--KLADSRIITEDELDSITLETTIEEILGNEALMAEMSERA 137 (159)
Q Consensus 68 ~Eal~~g~P~I~~p~~~~~~---~-~----q~~~~~~~~--~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 137 (159)
+|||++|+|+|+...+...+ + . +..+...+. ..|.|+.++..+ ++++++++.+++..+. +..++.++
T Consensus 241 LEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~ 317 (335)
T PHA01633 241 LESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKL 317 (335)
T ss_pred HHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHH
Confidence 99999999999985542211 0 0 000111222 346777776555 9999999999855432 22224455
Q ss_pred HhcCCCChHHHHHHHHH
Q 031484 138 LKAAKPGASADIAQHIL 154 (159)
Q Consensus 138 ~~~~~~~~~~~~~~~i~ 154 (159)
+..++...++++++.++
T Consensus 318 ~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 318 KELAKKYDIRNLYTRFL 334 (335)
T ss_pred HHHHHhcCHHHHHHHhh
Confidence 56666667888877654
No 111
>PLN02555 limonoid glucosyltransferase
Probab=99.19 E-value=2.3e-10 Score=92.31 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=73.7
Q ss_pred CCeEEecccccHHHHH--hhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHc-Cceeeec-----c
Q 031484 37 PRLLLTPFLHSMDLAY--AAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKL-ADSRIIT-----E 108 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l--~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~-~~g~~~~-----~ 108 (159)
+++.+.+|.|+ .+++ ..+.++|+|+|.+|++|++.+|+|+|.+|.. .+|..|+.++++. |.|+.+. .
T Consensus 337 ~~g~v~~W~PQ-~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvGv~l~~~~~~~ 411 (480)
T PLN02555 337 DKGKIVQWCPQ-EKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQW----GDQVTDAVYLVDVFKTGVRLCRGEAEN 411 (480)
T ss_pred CceEEEecCCH-HHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCc----cccHHHHHHHHHHhCceEEccCCcccc
Confidence 57788899986 5778 5688899999999999999999999999986 6889999998887 9998883 2
Q ss_pred CCCChhHHHHHHHHHhcCH
Q 031484 109 DELDSITLETTIEEILGNE 127 (159)
Q Consensus 109 ~~~~~~~l~~~l~~ll~~~ 127 (159)
+.++.+.+.+++.+++.++
T Consensus 412 ~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 412 KLITREEVAECLLEATVGE 430 (480)
T ss_pred CcCcHHHHHHHHHHHhcCc
Confidence 3567899999999999764
No 112
>PLN02939 transferase, transferring glycosyl groups
Probab=99.19 E-value=7.1e-10 Score=94.41 Aligned_cols=147 Identities=11% Similarity=0.128 Sum_probs=97.0
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc---HHHHHHHhhc---CCCeEEeccccc--HHHHHhhCceEEecC----ChHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA---FNEMESLVRN---HPRLLLTPFLHS--MDLAYAAADLIVSRA----GAMTCYE 69 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~---~~~l~~~~~~---~~~v~~~~~~~~--~~~~l~~ad~~i~~~----G~~t~~E 69 (159)
++++..++. +++++++++.+.. .+.++++... .++|.++++.++ .+.+|+.||+++.+| .+.+.+|
T Consensus 798 leA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLE 875 (977)
T PLN02939 798 RHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMI 875 (977)
T ss_pred HHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHH
Confidence 455555553 4678866543322 2444444332 357999887764 468999999999765 3788999
Q ss_pred HHHhCCcEEEecCCCCCCchHHHH--HHHH-HHcCceeeeccCCCChhHHHHHHHHHhc----CHHHHHHHHHHHHhcCC
Q 031484 70 ILATGKPSILIPSPNVAEGHQFKN--ASLM-AKLADSRIITEDELDSITLETTIEEILG----NEALMAEMSERALKAAK 142 (159)
Q Consensus 70 al~~g~P~I~~p~~~~~~~~q~~~--~~~~-~~~~~g~~~~~~~~~~~~l~~~l~~ll~----~~~~~~~~~~~~~~~~~ 142 (159)
||++|+|+|+....+..+ .... ...+ .+.++|+.++..+ ++.+++++.+++. ++..+++|..++. ..
T Consensus 876 AMAyGtPPVVs~vGGL~D--tV~d~d~e~i~~eg~NGfLf~~~D--~eaLa~AL~rAL~~~~~dpe~~~~L~~~am--~~ 949 (977)
T PLN02939 876 AMRYGSVPIVRKTGGLND--SVFDFDDETIPVELRNGFTFLTPD--EQGLNSALERAFNYYKRKPEVWKQLVQKDM--NI 949 (977)
T ss_pred HHHCCCCEEEecCCCCcc--eeecCCccccccCCCceEEecCCC--HHHHHHHHHHHHHHhccCHHHHHHHHHHHH--Hh
Confidence 999999999986654211 0000 0000 1236788887766 8889988887764 7888888887653 24
Q ss_pred CChHHHHHHHHHHh
Q 031484 143 PGASADIAQHILSL 156 (159)
Q Consensus 143 ~~~~~~~~~~i~~~ 156 (159)
..+|+.+++.+.++
T Consensus 950 dFSWe~~A~qYeeL 963 (977)
T PLN02939 950 DFSWDSSASQYEEL 963 (977)
T ss_pred cCCHHHHHHHHHHH
Confidence 56888888877665
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.18 E-value=7.3e-10 Score=89.20 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=96.7
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc-c-HHHHHHHhhc-CCCeEEe-cccc-cHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE-A-FNEMESLVRN-HPRLLLT-PFLH-SMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~-~-~~~l~~~~~~-~~~v~~~-~~~~-~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++++..+.+. +++++++++.. . .+.+++.... ..++.+. ++.. .+..+++.||+++..+ .+.+.+|||+
T Consensus 315 i~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 392 (476)
T cd03791 315 LEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMR 392 (476)
T ss_pred HHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhh
Confidence 4555555543 37886654332 2 3444444333 3577654 5554 3568999999999754 3578899999
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHH------cCceeeeccCCCChhHHHHHHHHHhc---CHHHHHHHHHHHHhcCCC
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAK------LADSRIITEDELDSITLETTIEEILG---NEALMAEMSERALKAAKP 143 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~------~~~g~~~~~~~~~~~~l~~~l~~ll~---~~~~~~~~~~~~~~~~~~ 143 (159)
+|+|+|+.+..+.. +.+.+ .+.|+.++..+ ++++++++.++++ +++.++++++++.. ..
T Consensus 393 ~G~pvI~~~~gg~~--------e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~--~~ 460 (476)
T cd03791 393 YGTVPIVRATGGLA--------DTVIDYNEDTGEGTGFVFEGYN--ADALLAALRRALALYRDPEAWRKLQRNAMA--QD 460 (476)
T ss_pred CCCCCEECcCCCcc--------ceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHHhc--cC
Confidence 99999998765321 22333 33899988776 8999999998874 66777777776543 35
Q ss_pred ChHHHHHHHHHHhhh
Q 031484 144 GASADIAQHILSLVE 158 (159)
Q Consensus 144 ~~~~~~~~~i~~~~~ 158 (159)
.+++++++.+.++..
T Consensus 461 fsw~~~a~~~~~~y~ 475 (476)
T cd03791 461 FSWDRSAKEYLELYR 475 (476)
T ss_pred CChHHHHHHHHHHHh
Confidence 789999998887754
No 114
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.11 E-value=6.9e-10 Score=89.34 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=96.6
Q ss_pred ChhhHHHHHhhcCCe----eEEEEcCcc-----cHHHH----HHHhhc---------CCCeEEe-ccc--ccHHHHHhhC
Q 031484 1 MLNLYYQMLMEKHNL----FIIWQTGVE-----AFNEM----ESLVRN---------HPRLLLT-PFL--HSMDLAYAAA 55 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~G~~-----~~~~l----~~~~~~---------~~~v~~~-~~~--~~~~~~l~~a 55 (159)
++++|..+++.+|++ ++++++++. .+.++ ++++.. ..++.++ +++ .++..+|+.|
T Consensus 282 ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~a 361 (460)
T cd03788 282 RLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAA 361 (460)
T ss_pred HHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhc
Confidence 467888899888874 465554321 22233 222211 1234444 554 4799999999
Q ss_pred ceEEecC---C-hHHHHHHHHhCCc----EEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCH
Q 031484 56 DLIVSRA---G-AMTCYEILATGKP----SILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 56 d~~i~~~---G-~~t~~Eal~~g~P----~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~ 127 (159)
|+++..| | +.+++|||+||+| +|+....+. .+. ...|+.+++.| ++.+++++.++++++
T Consensus 362 Dv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~--------~~~---~~~g~lv~p~d--~~~la~ai~~~l~~~ 428 (460)
T cd03788 362 DVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA--------AEE---LSGALLVNPYD--IDEVADAIHRALTMP 428 (460)
T ss_pred cEEEeCccccccCcccceeEEEecCCCceEEEeccccc--------hhh---cCCCEEECCCC--HHHHHHHHHHHHcCC
Confidence 9999755 3 6788999999999 776654421 111 34677888776 899999999999855
Q ss_pred -HHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 128 -ALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
+.++.+..++++....+.++..++..+.
T Consensus 429 ~~e~~~~~~~~~~~v~~~~~~~w~~~~l~ 457 (460)
T cd03788 429 LEERRERHRKLREYVRTHDVQAWANSFLD 457 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6777777777777777788777776554
No 115
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.10 E-value=4.5e-09 Score=80.14 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=86.4
Q ss_pred cCCeeEEEEcCcccHHHHHHHhh----cCCCeEEecccc--cHHHHHhhCceEEecC----C-hHHHHHHHHhCCcEEEe
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVR----NHPRLLLTPFLH--SMDLAYAAADLIVSRA----G-AMTCYEILATGKPSILI 80 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~----~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G-~~t~~Eal~~g~P~I~~ 80 (159)
..+++++++++....+.+..... ..+++.++|+++ ++..+|+.+|+++..+ | +.+++|||++|+|+|+.
T Consensus 195 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~ 274 (335)
T cd03802 195 RAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAF 274 (335)
T ss_pred hcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEe
Confidence 35788876544433333332221 136899999986 4789999999998533 2 67899999999999998
Q ss_pred cCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Q 031484 81 PSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 81 p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (159)
+.++ ..+.+.+...|+.++. ++++++++.++...+. +..++.+ ....+++.+++.++++.
T Consensus 275 ~~~~--------~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~~--~~~~~~~---~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 275 RRGA--------VPEVVEDGVTGFLVDS----VEELAAAVARADRLDR--AACRRRA---ERRFSAARMVDDYLALY 334 (335)
T ss_pred CCCC--------chhheeCCCcEEEeCC----HHHHHHHHHHHhccHH--HHHHHHH---HHhCCHHHHHHHHHHHh
Confidence 7652 2234444447888764 7899999998876542 1222211 24558888888887764
No 116
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.07 E-value=3e-09 Score=82.75 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=88.9
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc--cHHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE--AFNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~--~~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
+.+.++.+. +++++++...+. ....+.+.+...+++.++...+ ++..+|+.|+++|+.|| +-.-|+.++|+|+|
T Consensus 204 ~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdSs-GI~eEa~~lg~P~v 281 (346)
T PF02350_consen 204 EALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDSS-GIQEEAPSLGKPVV 281 (346)
T ss_dssp HHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESSH-HHHHHGGGGT--EE
T ss_pred HHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcCc-cHHHHHHHhCCeEE
Confidence 345555555 889998888843 3455555454446898887664 68899999999999999 43349999999999
Q ss_pred EecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 031484 79 LIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHIL 154 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
.+... ++ .......+..+.+.. + ++++.+++.++++++..++.+......++++++++++++.|.
T Consensus 282 ~iR~~----ge----Rqe~r~~~~nvlv~~-~--~~~I~~ai~~~l~~~~~~~~~~~~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 282 NIRDS----GE----RQEGRERGSNVLVGT-D--PEAIIQAIEKALSDKDFYRKLKNRPNPYGDGNASERIVEILK 346 (346)
T ss_dssp ECSSS-----S-----HHHHHTTSEEEETS-S--HHHHHHHHHHHHH-HHHHHHHHCS--TT-SS-HHHHHHHHHH
T ss_pred EecCC----CC----CHHHHhhcceEEeCC-C--HHHHHHHHHHHHhChHHHHhhccCCCCCCCCcHHHHHHHhhC
Confidence 98543 12 112344566655553 3 899999999999987766666655567888889999988763
No 117
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.06 E-value=3.3e-09 Score=84.16 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCeEEecccc---cHHHHHhhCceEEecC----ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccC
Q 031484 37 PRLLLTPFLH---SMDLAYAAADLIVSRA----GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITED 109 (159)
Q Consensus 37 ~~v~~~~~~~---~~~~~l~~ad~~i~~~----G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~ 109 (159)
+++...++.. ++.++|+.||+++..| -+.+++|||+||+|+|+++.++ ..+ +.+.+.|++++.+
T Consensus 286 ~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG--------~~E-iv~~~~G~lv~~~ 356 (405)
T PRK10125 286 GNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDA--------ARE-VLQKSGGKTVSEE 356 (405)
T ss_pred cceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCC--------hHH-hEeCCcEEEECCC
Confidence 4577777763 5788999999999765 2788999999999999997752 223 3444689999988
Q ss_pred CCChhHHHHHHHHHhcCHHHHHH-H---HHHHHhc-CCCChHHHHHHHHHHhh
Q 031484 110 ELDSITLETTIEEILGNEALMAE-M---SERALKA-AKPGASADIAQHILSLV 157 (159)
Q Consensus 110 ~~~~~~l~~~l~~ll~~~~~~~~-~---~~~~~~~-~~~~~~~~~~~~i~~~~ 157 (159)
| +++|++.+ ++..+++ + ...+++. ....+.+.+++..+++.
T Consensus 357 d--~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY 402 (405)
T PRK10125 357 E--VLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFY 402 (405)
T ss_pred C--HHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7 88888743 3333332 1 1223333 35568888888887764
No 118
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=6.5e-09 Score=80.41 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=102.1
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCC--CeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHP--RLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSIL 79 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~--~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~ 79 (159)
+++..++...+|+.+|++-+-+..++.++......+ ...++-...+-++.|..||+++..||+.| +|++.+|+|+|+
T Consensus 210 ~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aSGT~t-LE~aL~g~P~Vv 288 (381)
T COG0763 210 VQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAASGTAT-LEAALAGTPMVV 288 (381)
T ss_pred HHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhccHHH-HHHHHhCCCEEE
Confidence 456677777899999998877766555544332111 12222222356789999999999999988 799999999998
Q ss_pred ecCCCCCCchHHHHHHHHHHcCc--------ee-eec---cCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCC
Q 031484 80 IPSPNVAEGHQFKNASLMAKLAD--------SR-IIT---EDELDSITLETTIEEILGNEALMAEMSERALKA---AKPG 144 (159)
Q Consensus 80 ~p~~~~~~~~q~~~~~~~~~~~~--------g~-~~~---~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~---~~~~ 144 (159)
.-... .-.+..++++.+..+ +. +++ +++.+++.+++.+..++.|+..++++.+....+ ...+
T Consensus 289 ~Yk~~---~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~ 365 (381)
T COG0763 289 AYKVK---PITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRED 365 (381)
T ss_pred EEecc---HHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCC
Confidence 74331 112223344433221 11 111 367789999999999999997777777665333 3445
Q ss_pred -hHHHHHHHHHHhhh
Q 031484 145 -ASADIAQHILSLVE 158 (159)
Q Consensus 145 -~~~~~~~~i~~~~~ 158 (159)
..+..++.+++++.
T Consensus 366 ~~~e~aA~~vl~~~~ 380 (381)
T COG0763 366 PASEIAAQAVLELLL 380 (381)
T ss_pred cHHHHHHHHHHHHhc
Confidence 78888998888764
No 119
>PLN03015 UDP-glucosyl transferase
Probab=99.05 E-value=1.7e-08 Score=81.19 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=69.8
Q ss_pred CCeEEecccccHHHHHhhCc--eEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHH-HHcCceeeec----cC
Q 031484 37 PRLLLTPFLHSMDLAYAAAD--LIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLM-AKLADSRIIT----ED 109 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad--~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~-~~~~~g~~~~----~~ 109 (159)
.++.+.+|.|+. +++++.. .++||+|.+|++|++.+|+|+|..|.. .+|..|+..+ +..|.|+.+. .+
T Consensus 335 rGl~v~~W~PQ~-~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~----~DQ~~na~~~~~~~gvg~~~~~~~~~~ 409 (470)
T PLN03015 335 VGLVVTQWAPQV-EILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLY----AEQWMNATLLTEEIGVAVRTSELPSEK 409 (470)
T ss_pred CceEEEecCCHH-HHhccCccCeEEecCCchhHHHHHHcCCCEEecccc----cchHHHHHHHHHHhCeeEEecccccCC
Confidence 357788999974 7887755 499999999999999999999999985 6889999887 4668888774 13
Q ss_pred CCChhHHHHHHHHHhc
Q 031484 110 ELDSITLETTIEEILG 125 (159)
Q Consensus 110 ~~~~~~l~~~l~~ll~ 125 (159)
..+.+.+.+++++++.
T Consensus 410 ~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 410 VIGREEVASLVRKIVA 425 (470)
T ss_pred ccCHHHHHHHHHHHHc
Confidence 4678999999999995
No 120
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.04 E-value=8.1e-09 Score=80.78 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=91.3
Q ss_pred ChhhHHHHHhhcCCeeEEEEcCcccHHH-HHHHhhc-CCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 1 MLNLYYQMLMEKHNLFIIWQTGVEAFNE-MESLVRN-HPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~-l~~~~~~-~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
|+++...+.+.+|+++|++.+-+...++ +++.... ..++.+.-...+..++|+.||+++..||+.| +|++.+|+|+|
T Consensus 205 ~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SGTaT-LE~Al~g~P~V 283 (373)
T PF02684_consen 205 FLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASGTAT-LEAALLGVPMV 283 (373)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCCHHH-HHHHHhCCCEE
Confidence 3567788888899999988777655444 3333322 2345554444567899999999999999988 79999999999
Q ss_pred EecCCCCCCchHHHHHHHHHHcCce---------ee---eccCCCChhHHHHHHHHHhcCHHHHHHHHHHH
Q 031484 79 LIPSPNVAEGHQFKNASLMAKLADS---------RI---ITEDELDSITLETTIEEILGNEALMAEMSERA 137 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~~~~g---------~~---~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 137 (159)
++--. ..-....++.+.+..+. .+ +-+++.+++.+++.+.+++.|++.++......
T Consensus 284 v~Yk~---~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~ 351 (373)
T PF02684_consen 284 VAYKV---SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELF 351 (373)
T ss_pred EEEcC---cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 97332 12223345555443221 11 22467889999999999999998765544443
No 121
>PLN02316 synthase/transferase
Probab=99.04 E-value=9.7e-09 Score=88.67 Aligned_cols=144 Identities=12% Similarity=0.115 Sum_probs=97.3
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc---HHHHHHHhh----c-CCCeEEeccccc-H-HHHHhhCceEEecC----ChHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA---FNEMESLVR----N-HPRLLLTPFLHS-M-DLAYAAADLIVSRA----GAMTC 67 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~---~~~l~~~~~----~-~~~v~~~~~~~~-~-~~~l~~ad~~i~~~----G~~t~ 67 (159)
++++..+++ .+.+++++++++. ...++++.. . ..++.|.+..++ + +.+|+.||+++.+| .+.+.
T Consensus 859 i~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvq 936 (1036)
T PLN02316 859 KHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQ 936 (1036)
T ss_pred HHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHH
Confidence 556666664 4678876543322 344444433 1 246877765554 3 47999999999755 37889
Q ss_pred HHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-------------cCceeeeccCCCChhHHHHHHHHHhcC-HHHHHHH
Q 031484 68 YEILATGKPSILIPSPNVAEGHQFKNASLMAK-------------LADSRIITEDELDSITLETTIEEILGN-EALMAEM 133 (159)
Q Consensus 68 ~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-------------~~~g~~~~~~~~~~~~l~~~l~~ll~~-~~~~~~~ 133 (159)
+|||++|+|+|+....+.. +.+.+ .++|++++..+ ++.+..+|.+++.+ +..+..+
T Consensus 937 LEAMa~GtppVvs~vGGL~--------DtV~d~d~~~~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~ 1006 (1036)
T PLN02316 937 LTAMRYGSIPVVRKTGGLF--------DTVFDVDHDKERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWF 1006 (1036)
T ss_pred HHHHHcCCCeEEEcCCCcH--------hhccccccccccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHH
Confidence 9999999999998665421 12222 25799988776 88999999999986 3445556
Q ss_pred HHHHHhcC-CCChHHHHHHHHHHhh
Q 031484 134 SERALKAA-KPGASADIAQHILSLV 157 (159)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~~i~~~~ 157 (159)
+..+++.. ...+|+++++..+++-
T Consensus 1007 ~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 1007 NSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 66665543 4568888888877653
No 122
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=2.5e-08 Score=78.05 Aligned_cols=144 Identities=20% Similarity=0.223 Sum_probs=108.3
Q ss_pred hhhHHHHHhhcCCeeEEEEcCc--ccHHHHHHHhhc----------------CCCeEEecccccHHHHHhhCceEEe---
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGV--EAFNEMESLVRN----------------HPRLLLTPFLHSMDLAYAAADLIVS--- 60 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~--~~~~~l~~~~~~----------------~~~v~~~~~~~~~~~~l~~ad~~i~--- 60 (159)
++.+.++.+.+|+..++++ .+ +..+.++++++. ..+|.+.+...+|..+|+.||+++-
T Consensus 248 l~~~~~l~~~~~~~llIlV-PRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGS 326 (419)
T COG1519 248 LDAHQALKKQFPNLLLILV-PRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGS 326 (419)
T ss_pred HHHHHHHHhhCCCceEEEe-cCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCc
Confidence 4567778888898888665 43 235555555421 1267778888899999999999763
Q ss_pred --cCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHH
Q 031484 61 --RAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERAL 138 (159)
Q Consensus 61 --~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~ 138 (159)
.-||..++|.+++|+|+|..|+. .++...++.+.+.|.++.++. .+.+.+.+..++.|++.+++|.+++.
T Consensus 327 lv~~GGHN~LEpa~~~~pvi~Gp~~----~Nf~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~ 398 (419)
T COG1519 327 LVPIGGHNPLEPAAFGTPVIFGPYT----FNFSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGRAGL 398 (419)
T ss_pred ccCCCCCChhhHHHcCCCEEeCCcc----ccHHHHHHHHHhcCCeEEECC----HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 23667789999999999999986 356667888899999988865 57899999999999999999999988
Q ss_pred hcCCCC--hHHHHHHHHH
Q 031484 139 KAAKPG--ASADIAQHIL 154 (159)
Q Consensus 139 ~~~~~~--~~~~~~~~i~ 154 (159)
.....+ +.++..+.|.
T Consensus 399 ~~v~~~~gal~r~l~~l~ 416 (419)
T COG1519 399 EFLAQNRGALARTLEALK 416 (419)
T ss_pred HHHHHhhHHHHHHHHHhh
Confidence 776443 3344444443
No 123
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.8e-09 Score=70.94 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=76.0
Q ss_pred hhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCC---
Q 031484 10 MEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPN--- 84 (159)
Q Consensus 10 ~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~--- 84 (159)
..+-.-+++++.|+++...+ ...++++|. +++.++++.|.++|+|+|.+|++.++..++|.|++|...
T Consensus 26 ~~~i~e~lIvQyGn~d~kpv-------agl~v~~F~~~~kiQsli~darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~ 98 (161)
T COG5017 26 TELIQEELIVQYGNGDIKPV-------AGLRVYGFDKEEKIQSLIHDARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQ 98 (161)
T ss_pred HHHhhhheeeeecCCCcccc-------cccEEEeechHHHHHHHhhcceEEEeccCcchHHHHhhcCCcEEEEECchhHH
Confidence 34556678888888654331 246777776 579999999999999999999999999999999999876
Q ss_pred -CCCchHHHHHHHHHHcCceeeeccC
Q 031484 85 -VAEGHQFKNASLMAKLADSRIITED 109 (159)
Q Consensus 85 -~~~~~q~~~~~~~~~~~~g~~~~~~ 109 (159)
.+|+||...+..+.+.++-+.+.+.
T Consensus 99 elvDdHQvela~klae~~~vv~~spt 124 (161)
T COG5017 99 ELVDDHQVELALKLAEINYVVACSPT 124 (161)
T ss_pred HhhhhHHHHHHHHHHhcCceEEEcCC
Confidence 6789999999999988988887653
No 124
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.97 E-value=7.7e-09 Score=84.32 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=109.2
Q ss_pred ChhhHHHHHhhcCCeeEEE-EcCcc-c-HHHHHHHhh---cC-----------------------------CCeEEeccc
Q 031484 1 MLNLYYQMLMEKHNLFIIW-QTGVE-A-FNEMESLVR---NH-----------------------------PRLLLTPFL 45 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~G~~-~-~~~l~~~~~---~~-----------------------------~~v~~~~~~ 45 (159)
+|+++.++...+|++++.+ ..|.. + ...+++.+. .. ..|.+.+|.
T Consensus 338 ~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~ 417 (519)
T TIGR03713 338 ILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLT 417 (519)
T ss_pred HHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecC
Confidence 3678888889999999864 33331 1 123322211 11 578999999
Q ss_pred c--cHHHHHhhCceEEecC---ChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHH
Q 031484 46 H--SMDLAYAAADLIVSRA---GAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTI 120 (159)
Q Consensus 46 ~--~~~~~l~~ad~~i~~~---G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l 120 (159)
. ++.+.+..+.++|..| |..|.+||+++|+|+| ... ..+++++...|+++ ++ .++|.+++
T Consensus 418 ~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI--nyg---------~~~~V~d~~NG~li--~d--~~~l~~al 482 (519)
T TIGR03713 418 NEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI--NKV---------ETDYVEHNKNGYII--DD--ISELLKAL 482 (519)
T ss_pred CHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee--ecC---------CceeeEcCCCcEEe--CC--HHHHHHHH
Confidence 8 8999999999999654 5459999999999999 221 12467778889998 33 78999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Q 031484 121 EEILGNEALMAEMSERALKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 121 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (159)
..+|.++...+++...+.+.....+.+++.+.+.+++
T Consensus 483 ~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 483 DYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 9999999999999999999988889999998887753
No 125
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.92 E-value=3e-08 Score=84.55 Aligned_cols=143 Identities=14% Similarity=0.187 Sum_probs=95.7
Q ss_pred ChhhHHHHHhhcCCee--E--EEEcCcc-----cHHHHHHHhhc-----C---C-----CeEEe-ccc--ccHHHHHhhC
Q 031484 1 MLNLYYQMLMEKHNLF--I--IWQTGVE-----AFNEMESLVRN-----H---P-----RLLLT-PFL--HSMDLAYAAA 55 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~--~~~~G~~-----~~~~l~~~~~~-----~---~-----~v~~~-~~~--~~~~~~l~~a 55 (159)
++++|+.+++.+|+++ + +.++|+. .++++++.+.. + . .+..+ +++ .++..+|+.|
T Consensus 297 lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~A 376 (797)
T PLN03063 297 KYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAIT 376 (797)
T ss_pred HHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhC
Confidence 3688999999999874 3 3334331 24444443321 0 1 12222 234 3688999999
Q ss_pred ceEEecC---C-hHHHHHHHHhCCc----EEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc-C
Q 031484 56 DLIVSRA---G-AMTCYEILATGKP----SILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG-N 126 (159)
Q Consensus 56 d~~i~~~---G-~~t~~Eal~~g~P----~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~-~ 126 (159)
|+++..| | +.+++|+++||+| +|+....+. ++.+ ...|+.+++.| ++.++++|.+++. +
T Consensus 377 DvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~--------~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~ 444 (797)
T PLN03063 377 DVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA--------GQSL--GAGALLVNPWN--ITEVSSAIKEALNMS 444 (797)
T ss_pred CEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc--------hhhh--cCCeEEECCCC--HHHHHHHHHHHHhCC
Confidence 9999765 4 5788999999999 776655431 1112 23578888877 8999999999999 7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 127 EALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
+..++...+.+.++...+.+..-++..+.
T Consensus 445 ~~er~~r~~~~~~~v~~~~~~~Wa~~fl~ 473 (797)
T PLN03063 445 DEERETRHRHNFQYVKTHSAQKWADDFMS 473 (797)
T ss_pred HHHHHHHHHHHHHhhhhCCHHHHHHHHHH
Confidence 77777777777777777666666555443
No 126
>PLN02534 UDP-glycosyltransferase
Probab=98.87 E-value=1.9e-08 Score=81.47 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=79.1
Q ss_pred CeeEEEEcCcc-c---------HHHHHHHhhcCCCeEEecccccHHHHHhhCce--EEecCChHHHHHHHHhCCcEEEec
Q 031484 14 NLFIIWQTGVE-A---------FNEMESLVRNHPRLLLTPFLHSMDLAYAAADL--IVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 14 ~~~~~~~~G~~-~---------~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~--~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
+..|+|+..+. . .+.+.+.++ ..++.+.+|.|+ ..++.+.++ +|+|+|.+|++|++++|+|+|+.|
T Consensus 312 ~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~-~~g~~v~~w~pq-~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 312 KKPFIWVIKTGEKHSELEEWLVKENFEERIK-GRGLLIKGWAPQ-VLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred CCCEEEEEecCccccchhhhcCchhhHHhhc-cCCeeccCCCCH-HHHhcCCccceEEecCccHHHHHHHHcCCCEEecc
Confidence 44888988732 1 022222222 357888899997 578988887 999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHH-cCceeeecc------------C-CCChhHHHHHHHHHhc
Q 031484 82 SPNVAEGHQFKNASLMAK-LADSRIITE------------D-ELDSITLETTIEEILG 125 (159)
Q Consensus 82 ~~~~~~~~q~~~~~~~~~-~~~g~~~~~------------~-~~~~~~l~~~l~~ll~ 125 (159)
.. .+|..|+.++.+ .|.|+-+.. + ..+.+.+.+++++++.
T Consensus 390 ~~----~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 390 LF----AEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cc----ccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 85 678999888764 467665421 1 2578899999999996
No 127
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=2.8e-07 Score=68.97 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=94.5
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc-HHHHHHHhh---cCCCeEEecccc--cHHHHHhhCceEEecC---C-hHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA-FNEMESLVR---NHPRLLLTPFLH--SMDLAYAAADLIVSRA---G-AMTCYEIL 71 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~l~~~~~---~~~~v~~~~~~~--~~~~~l~~ad~~i~~~---G-~~t~~Eal 71 (159)
++++..+....++++++++++... .+.+..... ..+++.++++.+ ++..+++.||+++..+ | +.++.|++
T Consensus 218 i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~ 297 (381)
T COG0438 218 IEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAM 297 (381)
T ss_pred HHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHH
Confidence 344555555555567765544433 133333322 236889999987 6778899999999763 2 46689999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHH
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKA-AKPGASADIA 150 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (159)
++|+|+|..+.++ ..+.+.+.+.|+.+...+ .+.+.+.+..+++++..++.+.+...+. .....+++.+
T Consensus 298 a~g~pvi~~~~~~--------~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (381)
T COG0438 298 AAGTPVIASDVGG--------IPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAARERVEEEFSWERIA 367 (381)
T ss_pred hcCCcEEECCCCC--------hHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999886541 223344443466444433 7899999999999987676666633333 2466788877
Q ss_pred HHHHHhh
Q 031484 151 QHILSLV 157 (159)
Q Consensus 151 ~~i~~~~ 157 (159)
+.+.+++
T Consensus 368 ~~~~~~~ 374 (381)
T COG0438 368 EQLLELY 374 (381)
T ss_pred HHHHHHH
Confidence 7766553
No 128
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.86 E-value=1.1e-08 Score=73.27 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=60.1
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHH---HhhcCCCeEEeccc---ccHHHHHhhCceEEecCC----hHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMES---LVRNHPRLLLTPFL---HSMDLAYAAADLIVSRAG----AMTCYEIL 71 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~---~~~~~~~v~~~~~~---~~~~~~l~~ad~~i~~~G----~~t~~Eal 71 (159)
++++..+.+..++++++++++......... ......++.+.++. +....+++.||++++.+. +++++|+|
T Consensus 123 ~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam 202 (229)
T cd01635 123 IEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAM 202 (229)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHH
Confidence 567777777778999987766654333332 12235699999985 345566666999998775 78899999
Q ss_pred HhCCcEEEecCC
Q 031484 72 ATGKPSILIPSP 83 (159)
Q Consensus 72 ~~g~P~I~~p~~ 83 (159)
++|+|+|+.+.+
T Consensus 203 ~~g~pvi~s~~~ 214 (229)
T cd01635 203 ACGLPVIATDVG 214 (229)
T ss_pred hCCCCEEEcCCC
Confidence 999999998765
No 129
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.77 E-value=5.4e-08 Score=82.49 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=89.9
Q ss_pred ChhhHHHHHhhcCCe----eEEEEcCc-----ccHHHHHHHhhc----------C---CCe-EEecccc--cHHHHHhhC
Q 031484 1 MLNLYYQMLMEKHNL----FIIWQTGV-----EAFNEMESLVRN----------H---PRL-LLTPFLH--SMDLAYAAA 55 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~G~-----~~~~~l~~~~~~----------~---~~v-~~~~~~~--~~~~~l~~a 55 (159)
++++|..+++.+|++ ++++++++ ..++++++.+.. . ..+ .+.++.+ ++..+|+.|
T Consensus 283 ~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~a 362 (726)
T PRK14501 283 RLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAA 362 (726)
T ss_pred HHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhc
Confidence 368899999998874 56655432 123344333211 0 123 3556654 789999999
Q ss_pred ceEEecC---C-hHHHHHHHHhCCc----EEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCH
Q 031484 56 DLIVSRA---G-AMTCYEILATGKP----SILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 56 d~~i~~~---G-~~t~~Eal~~g~P----~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~ 127 (159)
|+++..| | +.+++|+++||+| .|+....+ .+..+ ..|+.+++.| ++.+++++.+++.++
T Consensus 363 Dv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G--------~~~~l---~~~llv~P~d--~~~la~ai~~~l~~~ 429 (726)
T PRK14501 363 DVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG--------AAAEL---AEALLVNPND--IEGIAAAIKRALEMP 429 (726)
T ss_pred cEEEecccccccCcccceEEEEcCCCCceEEEecccc--------hhHHh---CcCeEECCCC--HHHHHHHHHHHHcCC
Confidence 9999755 4 6788999999774 33333321 11122 2477888877 899999999999854
Q ss_pred -HHHHHHHHHHHhcCCCChHHHHHHHHHHh
Q 031484 128 -ALMAEMSERALKAAKPGASADIAQHILSL 156 (159)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 156 (159)
..++....++++....+.++..++..++.
T Consensus 430 ~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~ 459 (726)
T PRK14501 430 EEEQRERMQAMQERLRRYDVHKWASDFLDE 459 (726)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34443334555555566777776665543
No 130
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.75 E-value=2.1e-07 Score=72.93 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=70.1
Q ss_pred CCCeEEecccc--cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCCh
Q 031484 36 HPRLLLTPFLH--SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDS 113 (159)
Q Consensus 36 ~~~v~~~~~~~--~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~ 113 (159)
.+++.+++..+ ++..+|+.|+++|+.++++. .||.++|+|+|.+.. .| +-+........+..+ +
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi-~EA~~lg~Pvv~l~~------R~----e~~~~g~nvl~vg~~---~ 326 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNADAVIGNSSSGI-IEAPSFGVPTINIGT------RQ----KGRLRADSVIDVDPD---K 326 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCEEEEcChhHH-HhhhhcCCCEEeecC------Cc----hhhhhcCeEEEeCCC---H
Confidence 46899998664 78899999999999885554 899999999997631 11 112222333435433 7
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 031484 114 ITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHI 153 (159)
Q Consensus 114 ~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (159)
+++.+++.+++ ++..++.+......++++++++++++.|
T Consensus 327 ~~I~~a~~~~~-~~~~~~~~~~~~~pygdg~as~rI~~~l 365 (365)
T TIGR03568 327 EEIVKAIEKLL-DPAFKKSLKNVKNPYGDGNSSERIIEIL 365 (365)
T ss_pred HHHHHHHHHHh-ChHHHHHHhhCCCCCCCChHHHHHHHhC
Confidence 89999999954 5555444444334567777888887653
No 131
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.75 E-value=2.2e-07 Score=74.33 Aligned_cols=133 Identities=11% Similarity=0.123 Sum_probs=96.5
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEe-cccc-cHHHHHhhCceEEe--cCC--hHHHHHHHHhCC
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLT-PFLH-SMDLAYAAADLIVS--RAG--AMTCYEILATGK 75 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~-~~~~-~~~~~l~~ad~~i~--~~G--~~t~~Eal~~g~ 75 (159)
|+.++++.+..|+++|-+..|..-.++|.++ ...+|++++ ++.+ .+.+++..||+.+. ++. +.++.||+..|+
T Consensus 294 I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~ 372 (438)
T TIGR02919 294 IEHLEEIVQALPDYHFHIAALTEMSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNL 372 (438)
T ss_pred HHHHHHHHHhCCCcEEEEEecCcccHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCC
Confidence 6788999999999999775454434666665 334666554 5677 89999999999984 332 688999999999
Q ss_pred cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 031484 76 PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKPGASA 147 (159)
Q Consensus 76 P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
|++.....+ ++ .+.+.+ |.+++.++ ++++++.+.+++.++...++.....++.+..-..+
T Consensus 373 pI~afd~t~---~~----~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 373 LILGFEETA---HN----RDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred cEEEEeccc---CC----cccccC---CceecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCHH
Confidence 999986542 11 122332 66777776 89999999999999987777666666665444443
No 132
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.64 E-value=1.3e-06 Score=70.08 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=92.2
Q ss_pred hhhHHHHHhhcCCeeEEEEcCccc-HHHHHHHhhc----CCCeEEecccc--cHHHHHhhCceEEe---cCChHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEA-FNEMESLVRN----HPRLLLTPFLH--SMDLAYAAADLIVS---RAGAMTCYEIL 71 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~l~~~~~~----~~~v~~~~~~~--~~~~~l~~ad~~i~---~~G~~t~~Eal 71 (159)
++.|.++|+.-|+-++++..++.. .+.+.+.+.. ..++.|.+..+ +.-..++.+|+++- .+|++|.+||+
T Consensus 302 l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dAL 381 (468)
T PF13844_consen 302 LDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDAL 381 (468)
T ss_dssp HHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHH
Confidence 467899999999998876655432 3444444322 34788888764 34456688999983 34667889999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCChHHH
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA---KPGASAD 148 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~---~~~~~~~ 148 (159)
.+|+|+|..+-..+. ....+..+...|..-.+... .++-.+...++-.|++++++++.+.++.. .-....+
T Consensus 382 wmGVPvVTl~G~~~~---sR~~aSiL~~lGl~ElIA~s---~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~ 455 (468)
T PF13844_consen 382 WMGVPVVTLPGETMA---SRVGASILRALGLPELIADS---EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKR 455 (468)
T ss_dssp HHT--EEB---SSGG---GSHHHHHHHHHT-GGGB-SS---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHH
T ss_pred HcCCCEEeccCCCch---hHHHHHHHHHcCCchhcCCC---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 999999998765332 22345677777775444332 67888888889999999998888875432 2235666
Q ss_pred HHHHHHHhh
Q 031484 149 IAQHILSLV 157 (159)
Q Consensus 149 ~~~~i~~~~ 157 (159)
.+..+++.+
T Consensus 456 ~ar~lE~a~ 464 (468)
T PF13844_consen 456 FARNLEAAY 464 (468)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 133
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.54 E-value=6.1e-06 Score=67.98 Aligned_cols=136 Identities=9% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCeeEEEEcCccc-HHHHHHHhhcCC--CeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCch
Q 031484 13 HNLFIIWQTGVEA-FNEMESLVRNHP--RLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGH 89 (159)
Q Consensus 13 ~~~~~~~~~G~~~-~~~l~~~~~~~~--~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~ 89 (159)
++.++++...+.. .+.+++.+...+ ++.+..- .+-.++|+.||+++..||+.| +|++.+|+|++++-... .-
T Consensus 445 ~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~-~~~~~~m~aaD~aLaaSGTaT-LEaAL~g~PmVV~YK~s---~L 519 (608)
T PRK01021 445 STHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS-QFRYELMRECDCALAKCGTIV-LETALNQTPTIVTCQLR---PF 519 (608)
T ss_pred cCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC-cchHHHHHhcCeeeecCCHHH-HHHHHhCCCEEEEEecC---HH
Confidence 4678877655543 344555443222 2344321 124699999999999999988 79999999999973321 11
Q ss_pred HHHHHHHHHHc------------Cceee---ec-cCCCChhHHHHHHHHHhcCHHHHHHHHHHHH----hcCCCC-hHHH
Q 031484 90 QFKNASLMAKL------------ADSRI---IT-EDELDSITLETTIEEILGNEALMAEMSERAL----KAAKPG-ASAD 148 (159)
Q Consensus 90 q~~~~~~~~~~------------~~g~~---~~-~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~----~~~~~~-~~~~ 148 (159)
....++.+.+. |..++ +. +++.+++.+++.+ +++.|++.++++.+... .++.+. +.++
T Consensus 520 ty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~~~~~~ 598 (608)
T PRK01021 520 DTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMNESASTMKE 598 (608)
T ss_pred HHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 22234445441 11111 21 4578899999996 88999988887777753 334333 5566
Q ss_pred HHHHHH
Q 031484 149 IAQHIL 154 (159)
Q Consensus 149 ~~~~i~ 154 (159)
.++.|-
T Consensus 599 ~~~~~~ 604 (608)
T PRK01021 599 CLSLIF 604 (608)
T ss_pred HHHHHH
Confidence 665553
No 134
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.53 E-value=4.3e-06 Score=64.71 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=74.3
Q ss_pred cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc--cHHHHHhhCce-EEec-C-------------ChHHHHHHHHhC
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH--SMDLAYAAADL-IVSR-A-------------GAMTCYEILATG 74 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~-~i~~-~-------------G~~t~~Eal~~g 74 (159)
.+++++++ .|.+...+ ...++|.+.|+.+ ++..+|+. |+ .+.. . -++-+.++|++|
T Consensus 188 ~~~~~l~i-~G~g~~~~-----~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G 260 (333)
T PRK09814 188 SQGIKLTV-FGPNPEDL-----ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG 260 (333)
T ss_pred CCCCeEEE-ECCCcccc-----ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCC
Confidence 46777765 45442211 1246899999996 67788887 43 2221 1 134578899999
Q ss_pred CcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 031484 75 KPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAA 141 (159)
Q Consensus 75 ~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~ 141 (159)
+|+|+.+.+ ...+.+.+.+.|+.++. .+++.+.+..+ +++.+++|++++++++
T Consensus 261 ~PVI~~~~~--------~~~~~V~~~~~G~~v~~----~~el~~~l~~~--~~~~~~~m~~n~~~~~ 313 (333)
T PRK09814 261 LPVIVWSKA--------AIADFIVENGLGFVVDS----LEELPEIIDNI--TEEEYQEMVENVKKIS 313 (333)
T ss_pred CCEEECCCc--------cHHHHHHhCCceEEeCC----HHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 999987553 24567888999999872 67888888875 3466777888876654
No 135
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=98.52 E-value=2.2e-06 Score=65.93 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHh---hcCCCeEEecccc--cHHHHHhhCceEEecC----ChHHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLV---RNHPRLLLTPFLH--SMDLAYAAADLIVSRA----GAMTCYEILA 72 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~---~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~----G~~t~~Eal~ 72 (159)
++..-.+..++|+++|++++.++....++++. .-..++.++|-++ ++.++|..-|+++..| -..++.||++
T Consensus 214 ~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaS 293 (426)
T KOG1111|consen 214 LEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAAS 293 (426)
T ss_pred HHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHh
Confidence 45566777889999997654444333444433 3356899999985 7999999999999755 3578999999
Q ss_pred hCCcEEEecCCC
Q 031484 73 TGKPSILIPSPN 84 (159)
Q Consensus 73 ~g~P~I~~p~~~ 84 (159)
||.|++.+...+
T Consensus 294 cGL~VVsTrVGG 305 (426)
T KOG1111|consen 294 CGLPVVSTRVGG 305 (426)
T ss_pred CCCEEEEeecCC
Confidence 999999987654
No 136
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.50 E-value=9.9e-07 Score=55.48 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=61.2
Q ss_pred hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Q 031484 64 AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK- 142 (159)
Q Consensus 64 ~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~- 142 (159)
+..++|++++|+|+|..+.+ .....+.+...++.+. + ++.+.+.+..+++||..++++++++++...
T Consensus 12 ~~r~~E~~a~G~~vi~~~~~--------~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 12 NMRIFEAMACGTPVISDDSP--------GLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred chHHHHHHHCCCeEEECChH--------HHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999976432 2233343333455554 3 899999999999999999999999988875
Q ss_pred CChHHHHHHHHHH
Q 031484 143 PGASADIAQHILS 155 (159)
Q Consensus 143 ~~~~~~~~~~i~~ 155 (159)
...++..+++|++
T Consensus 80 ~~t~~~~~~~il~ 92 (92)
T PF13524_consen 80 RHTWEHRAEQILE 92 (92)
T ss_pred hCCHHHHHHHHHC
Confidence 6688888888763
No 137
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.47 E-value=5.8e-07 Score=72.14 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=84.4
Q ss_pred HHHHHHhhcC----CCeEEeccccc--HHHHHhhCceEEecC-C---hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHH
Q 031484 27 NEMESLVRNH----PRLLLTPFLHS--MDLAYAAADLIVSRA-G---AMTCYEILATGKPSILIPSPNVAEGHQFKNASL 96 (159)
Q Consensus 27 ~~l~~~~~~~----~~v~~~~~~~~--~~~~l~~ad~~i~~~-G---~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~ 96 (159)
.+|.+++++. ..+.++..... ...+++.+..+...+ + |.|.+|||+||+|++++...+ .++-
T Consensus 332 ~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GG--------P~Ei 403 (495)
T KOG0853|consen 332 KELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGG--------PAEI 403 (495)
T ss_pred HHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCC--------ceEE
Confidence 4444444432 24455455543 345556666666433 3 677899999999999997653 2445
Q ss_pred HHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhh
Q 031484 97 MAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAKP-GASADIAQHILSLV 157 (159)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 157 (159)
+++.-.|..+++++-....+++++.++..||+++.+|+++.++.... ..+....+.|.+++
T Consensus 404 V~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~ 465 (495)
T KOG0853|consen 404 VVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVL 465 (495)
T ss_pred EEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 66677899988743223369999999999999999999998777654 57766666666654
No 138
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.39 E-value=2.2e-05 Score=63.66 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=78.5
Q ss_pred hhhHHHHHhhcCCe----eEEEEcCcc-----cHHHH----HHHhhc----------CCCeEEecccc--cHHHHHhhCc
Q 031484 2 LNLYYQMLMEKHNL----FIIWQTGVE-----AFNEM----ESLVRN----------HPRLLLTPFLH--SMDLAYAAAD 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~----~~~~~~G~~-----~~~~l----~~~~~~----------~~~v~~~~~~~--~~~~~l~~ad 56 (159)
+++|+++|+.+|++ .+++++++. .+.++ ++++.. .+-+.+.++++ ++..+|+.||
T Consensus 304 l~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~AD 383 (487)
T TIGR02398 304 LNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMAD 383 (487)
T ss_pred HHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCC
Confidence 67899999999975 565555542 23333 333321 12235667764 6889999999
Q ss_pred eEEecC---C-hHHHHHHHHhCC----cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHH
Q 031484 57 LIVSRA---G-AMTCYEILATGK----PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEA 128 (159)
Q Consensus 57 ~~i~~~---G-~~t~~Eal~~g~----P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~ 128 (159)
+++..+ | ..+..|.++|+. |+|++...++ + .....++.+++.| ++.++++|.+.+..|.
T Consensus 384 V~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa--------a---~~l~~AllVNP~d--~~~~A~ai~~AL~m~~ 450 (487)
T TIGR02398 384 VMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA--------A---VELKGALLTNPYD--PVRMDETIYVALAMPK 450 (487)
T ss_pred EEEECccccccCcchhhHHhhhcCCCCCEEEeccccc--------h---hhcCCCEEECCCC--HHHHHHHHHHHHcCCH
Confidence 998755 5 356789999988 8888766531 2 2234577787776 8999999999998654
No 139
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.29 E-value=3.7e-05 Score=59.64 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=61.9
Q ss_pred eEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHH
Q 031484 39 LLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLET 118 (159)
Q Consensus 39 v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 118 (159)
+.+.+-.-+..+++..||++|+.+|+++ .||+.+|+|.|.+ ++ +..-..-+++.+.|. +....+ ++++.+
T Consensus 233 ~~i~~~~vd~~~Ll~~a~l~Ig~ggTMa-~EAA~LGtPaIs~-~~----g~~~~vd~~L~~~Gl--l~~~~~--~~ei~~ 302 (335)
T PF04007_consen 233 VIIPPEPVDGLDLLYYADLVIGGGGTMA-REAALLGTPAISC-FP----GKLLAVDKYLIEKGL--LYHSTD--PDEIVE 302 (335)
T ss_pred ccccCCCCCHHHHHHhcCEEEeCCcHHH-HHHHHhCCCEEEe-cC----CcchhHHHHHHHCCC--eEecCC--HHHHHH
Confidence 4444332246689999999999888776 7999999999986 32 111112245676765 444443 677776
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Q 031484 119 TIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 119 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (159)
.+.+.+. .++ +.......+..+.+.+.|++++
T Consensus 303 ~v~~~~~---~~~----~~~~~~~~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 303 YVRKNLG---KRK----KIREKKSEDPTDLIIEEIEEYI 334 (335)
T ss_pred HHHHhhh---ccc----chhhhhccCHHHHHHHHHHHhh
Confidence 5544332 111 1112223556777788777765
No 140
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.26 E-value=3.9e-06 Score=63.43 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH----cCceeeeccCCCC
Q 031484 37 PRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK----LADSRIITEDELD 112 (159)
Q Consensus 37 ~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~----~~~g~~~~~~~~~ 112 (159)
.|..+.-...++.+.++.+|++|.++|+-| -++.-.|+|+|.+|-. ++|+ |.-|.+. .|....+...
T Consensus 294 dnc~l~lsqqsfadiLH~adaalgmAGTAt-EQavGLGkPvi~fPg~----GPQy-~pgFA~rQ~rLLG~sltlv~~--- 364 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADAALGMAGTAT-EQAVGLGKPVIGFPGQ----GPQY-NPGFAERQQRLLGASLTLVRP--- 364 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHHHHHhccchH-HHhhccCCceeecCCC----CCCc-ChHHHHHHHHHhcceeeecCC---
Confidence 355555445679999999999999999765 5688999999999864 3443 2223322 3665544333
Q ss_pred hhHHHHHHHH-HhcCHHHHHHHHHHH-HhcCCCChHHHHHHHHHHhh
Q 031484 113 SITLETTIEE-ILGNEALMAEMSERA-LKAAKPGASADIAQHILSLV 157 (159)
Q Consensus 113 ~~~l~~~l~~-ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 157 (159)
..+-+..+.+ ++.|+.+.+.++++. +++++..++.++++.+.++.
T Consensus 365 ~aq~a~~~~q~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e~a 411 (412)
T COG4370 365 EAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQAGAARRIAEELGEMA 411 (412)
T ss_pred chhhHHHHHHHHhcChHHHHHHHhcchhhccCcchHHHHHHHHHHhc
Confidence 2344455554 999999999999775 67778889999999987764
No 141
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.24 E-value=9.4e-05 Score=64.15 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=88.6
Q ss_pred hhhHHHHHhhcCCee--EEEE-cCc------ccHHHHHHHh----hc----C-----CCeEEec-cc--ccHHHHHhhCc
Q 031484 2 LNLYYQMLMEKHNLF--IIWQ-TGV------EAFNEMESLV----RN----H-----PRLLLTP-FL--HSMDLAYAAAD 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~-~G~------~~~~~l~~~~----~~----~-----~~v~~~~-~~--~~~~~~l~~ad 56 (159)
+.+|+++|+.+|+|+ ++++ ... ..+.++++.+ .. . ..|..+. .+ .++..+|+.||
T Consensus 382 L~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~AD 461 (934)
T PLN03064 382 ILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTD 461 (934)
T ss_pred HHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCC
Confidence 578999999999985 4332 221 2344443332 11 1 1233222 22 36789999999
Q ss_pred eEEecC---C-hHHHHHHHHhCC----cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc-CH
Q 031484 57 LIVSRA---G-AMTCYEILATGK----PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG-NE 127 (159)
Q Consensus 57 ~~i~~~---G-~~t~~Eal~~g~----P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~-~~ 127 (159)
+++..+ | ..+..|+++|+. +.|+....+ .+..+ ...++.+++.| .+.++++|.+.+. ++
T Consensus 462 V~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaG--------aa~~L--~~~AllVNP~D--~~~vA~AI~~AL~M~~ 529 (934)
T PLN03064 462 VALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAG--------AAQSL--GAGAILVNPWN--ITEVAASIAQALNMPE 529 (934)
T ss_pred EEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCc--------hHHHh--CCceEEECCCC--HHHHHHHHHHHHhCCH
Confidence 998655 5 456789999954 333344432 22233 22567788776 8999999999998 78
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHH
Q 031484 128 ALMAEMSERALKAAKPGASADIAQH 152 (159)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (159)
+.++...+...+......+..-++.
T Consensus 530 ~Er~~r~~~~~~~V~~~d~~~Wa~~ 554 (934)
T PLN03064 530 EEREKRHRHNFMHVTTHTAQEWAET 554 (934)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHH
Confidence 8888888888777766665554444
No 142
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.24 E-value=6.5e-06 Score=67.53 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=67.7
Q ss_pred cHHHHHhhCceEEecC---C-hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHc-Cceeeecc-C----CCChhHH
Q 031484 47 SMDLAYAAADLIVSRA---G-AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKL-ADSRIITE-D----ELDSITL 116 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~---G-~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~-~~g~~~~~-~----~~~~~~l 116 (159)
...++++.||+++.+| | +.|++|||+||+|+|++...++.. . ..+.+.+. ..|+.+.. . ..+.+.+
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~---~-v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC---F-MEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh---h-hHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 3789999999999865 3 688999999999999997753211 1 11112222 24555431 1 1236778
Q ss_pred HHHHHHHhcCHHHHHHHHHHHH--hcCCCChHHHHHHHHHH
Q 031484 117 ETTIEEILGNEALMAEMSERAL--KAAKPGASADIAQHILS 155 (159)
Q Consensus 117 ~~~l~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~ 155 (159)
++.+.++++. +.++.+..+.. +......|+++++...+
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~ 582 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRK 582 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888854 55665555544 66666788888766544
No 143
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.73 E-value=0.00015 Score=56.83 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=70.6
Q ss_pred cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHH
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQF 91 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~ 91 (159)
.+++.+++-.-+.............+++......+++.++|..||+.||.-.+ .+.|.+.+++|+|..... -++.
T Consensus 227 ~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDiLITDySS-i~fD~~~l~KPiify~~D----~~~Y 301 (369)
T PF04464_consen 227 KNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADILITDYSS-IIFDFLLLNKPIIFYQPD----LEEY 301 (369)
T ss_dssp TTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHHHT-SEEEESS-T-HHHHHGGGT--EEEE-TT----TTTT
T ss_pred CCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHHHhcCEEEEechh-HHHHHHHhCCCEEEEecc----HHHH
Confidence 45666654333322222221122245777776666899999999999997654 578999999999976321 1111
Q ss_pred HHH----HHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHH----HHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 92 KNA----SLMAKLADSRIITEDELDSITLETTIEEILGNEAL----MAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 92 ~~~----~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
... .-..+...|.++. +.++|.++|..++.++.. ++...+....+.++++++++++.|++
T Consensus 302 ~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~k 369 (369)
T PF04464_consen 302 EKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIFK 369 (369)
T ss_dssp TTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHHH
T ss_pred hhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 000 0011122233332 267899999888765543 34444555555678899999998864
No 144
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.67 E-value=0.0031 Score=50.67 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=62.3
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCce-eeeccCCCChhHHHHHHHHHhc
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADS-RIITEDELDSITLETTIEEILG 125 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g-~~~~~~~~~~~~l~~~l~~ll~ 125 (159)
++..++++||++|+. -..++.=|++.|+|++.+++. .....++...|.. +++..++++++.+.+.+.++++
T Consensus 320 e~~~iIs~~dl~ig~-RlHa~I~a~~~gvP~i~i~Y~-------~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 320 EMGKILGACELTVGT-RLHSAIISMNFGTPAIAINYE-------HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHHHhhCCEEEEe-cchHHHHHHHcCCCEEEeeeh-------HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 677999999999984 334567899999999999763 1234567777765 3356677778999999999999
Q ss_pred CHHHH-HHHHHHHHhc
Q 031484 126 NEALM-AEMSERALKA 140 (159)
Q Consensus 126 ~~~~~-~~~~~~~~~~ 140 (159)
+.+.. ++...+..+.
T Consensus 392 ~r~~~~~~l~~~v~~~ 407 (426)
T PRK10017 392 QLPALNARLAEAVSRE 407 (426)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 86644 4555554443
No 145
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0026 Score=49.28 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=85.3
Q ss_pred cCCeeEEEEcCccc-HHHHHHHhhc--CCCeEEe-ccc--ccHHHHHhhCceEEe----cCC---hHHHHHHHHhCCcEE
Q 031484 12 KHNLFIIWQTGVEA-FNEMESLVRN--HPRLLLT-PFL--HSMDLAYAAADLIVS----RAG---AMTCYEILATGKPSI 78 (159)
Q Consensus 12 ~~~~~~~~~~G~~~-~~~l~~~~~~--~~~v~~~-~~~--~~~~~~l~~ad~~i~----~~G---~~t~~Eal~~g~P~I 78 (159)
.|++-+ +++|++- .+...+.+.. ..+|.+. .|. .+.+.+++.||+-|| .|| ++-+..-.-||+|++
T Consensus 291 lP~llc-iITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvc 369 (444)
T KOG2941|consen 291 LPSLLC-IITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 369 (444)
T ss_pred CCcEEE-EEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCcee
Confidence 355544 6788763 3333333332 3467544 555 378999999999774 567 678899999999999
Q ss_pred EecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc----CHHHHHHHHHHHHhc---CCCChHHHHHH
Q 031484 79 LIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG----NEALMAEMSERALKA---AKPGASADIAQ 151 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~----~~~~~~~~~~~~~~~---~~~~~~~~~~~ 151 (159)
++.++- .-+.+.+..+|.++.. .+++++++..+++ +.+...+.+++..+- .+...|++.+.
T Consensus 370 A~~fkc--------l~ELVkh~eNGlvF~D----s~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~~~~ 437 (444)
T KOG2941|consen 370 AVNFKC--------LDELVKHGENGLVFED----SEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWERTAL 437 (444)
T ss_pred eecchh--------HHHHHhcCCCceEecc----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHHhhh
Confidence 986641 2234555667877753 7899999999988 777777777776544 23345555544
No 146
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=97.49 E-value=0.0011 Score=49.81 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=52.9
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
+.+..++..+|++++++=.-+. ....+.+. ...+++.+....-++.+++..||.+++-.++ +-+||+.+|+|+
T Consensus 144 ~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ll~~s~~VvtinSt-vGlEAll~gkpV 221 (269)
T PF05159_consen 144 DMLESFAKENPDAKLVVKPHPDERGGNKYSYLEEL-PNLPNVVIIDDDVNLYELLEQSDAVVTINST-VGLEALLHGKPV 221 (269)
T ss_pred HHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhh-hcCCCeEEECCCCCHHHHHHhCCEEEEECCH-HHHHHHHcCCce
Confidence 4455666778899987744441 12222222 1235566665555789999999999997665 458999999999
Q ss_pred EEecC
Q 031484 78 ILIPS 82 (159)
Q Consensus 78 I~~p~ 82 (159)
++.-.
T Consensus 222 i~~G~ 226 (269)
T PF05159_consen 222 IVFGR 226 (269)
T ss_pred EEecC
Confidence 99743
No 147
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.35 E-value=0.0064 Score=46.88 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=62.6
Q ss_pred hhHHHHHhhcCCeeEEEEcCccc----HHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecCCh-HHHHHHHHhCC
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEA----FNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAGA-MTCYEILATGK 75 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~----~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G~-~t~~Eal~~g~ 75 (159)
+.+.++++.++ ..+++.+.+.. .+.|.+.++..+.+.+.+..+ -+..+|+.||.++..+-. +-+.||++.|+
T Consensus 172 ~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~ 250 (311)
T PF06258_consen 172 DQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGK 250 (311)
T ss_pred HHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCC
Confidence 44555666655 67777666643 234444343345665555443 377999999999876653 34689999999
Q ss_pred cEEEecCCCCCCchHHHHHHHHHHcCceeeec
Q 031484 76 PSILIPSPNVAEGHQFKNASLMAKLADSRIIT 107 (159)
Q Consensus 76 P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~ 107 (159)
||.+.+.+. ..+.-....+.+.+.|....+.
T Consensus 251 pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 251 PVYVLPLPG-RSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred CEEEecCCC-cchHHHHHHHHHHHCCCEEECC
Confidence 999998864 1111111234455566554443
No 148
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.28 E-value=0.0042 Score=47.46 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=46.7
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGN 126 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~ 126 (159)
+.-+++-.|+++|+.+|++. -||+..|+|.|.+- + +.-..--+++.+.|..+. ..+ +.++.+.+.+.+.+
T Consensus 245 D~l~Llyya~lvig~ggTMa-rEaAlLGtpaIs~~-p----Gkll~vdk~lie~G~~~~--s~~--~~~~~~~a~~~l~~ 314 (346)
T COG1817 245 DTLSLLYYATLVIGAGGTMA-REAALLGTPAISCY-P----GKLLAVDKYLIEKGLLYH--STD--EIAIVEYAVRNLKY 314 (346)
T ss_pred cHHHHHhhhheeecCCchHH-HHHHHhCCceEEec-C----CccccccHHHHhcCceee--cCC--HHHHHHHHHHHhhc
Confidence 33468999999999888776 79999999999873 3 111112345666665544 333 44555556666655
Q ss_pred HH
Q 031484 127 EA 128 (159)
Q Consensus 127 ~~ 128 (159)
+.
T Consensus 315 ~~ 316 (346)
T COG1817 315 RR 316 (346)
T ss_pred hh
Confidence 53
No 149
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.015 Score=47.43 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=73.6
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc--c-HHHHHHHhhcCC-CeEEe-cccc-cHHHHHhhCceEEecC----ChHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE--A-FNEMESLVRNHP-RLLLT-PFLH-SMDLAYAAADLIVSRA----GAMTCYEIL 71 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~--~-~~~l~~~~~~~~-~v~~~-~~~~-~~~~~l~~ad~~i~~~----G~~t~~Eal 71 (159)
++.+..++... +++++. |.+ . .+.+..+.+.++ ++.+. +|.. -.+.+++.||+++-+| -+.|-+++|
T Consensus 313 ~~~i~~~l~~~--~~~vil-G~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~am 389 (487)
T COG0297 313 LEAIDELLEQG--WQLVLL-GTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAM 389 (487)
T ss_pred HHHHHHHHHhC--ceEEEE-ecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHH
Confidence 44555666665 777553 433 2 344444444344 45444 4443 3567789999999655 256779999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG 125 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~ 125 (159)
.+|++-|+.+..+..|--...+.......++|+.+.+.+ ++.+..++.+.+.
T Consensus 390 ryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~--~~~l~~al~rA~~ 441 (487)
T COG0297 390 RYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTN--PDHLANALRRALV 441 (487)
T ss_pred HcCCcceEcccCCccceecCccchhccCceeEEEEecCC--HHHHHHHHHHHHH
Confidence 999999998887654421100111123458888887664 8999999887653
No 150
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.00 E-value=0.071 Score=41.54 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=79.1
Q ss_pred hhhHHHHHhhc-CCeeEEEEcCcc--c---HHHHHHHhhc---CCCeEE-ecccc--cHHHHHhhCceEEec----CChH
Q 031484 2 LNLYYQMLMEK-HNLFIIWQTGVE--A---FNEMESLVRN---HPRLLL-TPFLH--SMDLAYAAADLIVSR----AGAM 65 (159)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~G~~--~---~~~l~~~~~~---~~~v~~-~~~~~--~~~~~l~~ad~~i~~----~G~~ 65 (159)
+++++.+-+.. .+.++++..|-+ + .+++++.... .+++.+ .++.+ +...+++.||+.|.. -|-+
T Consensus 201 ieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiG 280 (360)
T PF07429_consen 201 IEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIG 280 (360)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHh
Confidence 35566555543 468888876653 2 2344444332 246765 45775 677899999999863 3678
Q ss_pred HHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc
Q 031484 66 TCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG 125 (159)
Q Consensus 66 t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~ 125 (159)
|+.-++.+|+|+.+.... ..++.+.+.|..+....++++.+.+.++=+++..
T Consensus 281 nI~lLl~~G~~v~L~~~n--------p~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 281 NICLLLQLGKKVFLSRDN--------PFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHcCCeEEEecCC--------hHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh
Confidence 899999999999987432 1456788888887777778877777776666643
No 151
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.069 Score=44.12 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=86.7
Q ss_pred hhHHHHHhhcCCeeEEEEcCccc---HHHHHHHhhc----CCCeEEecccc--cHHHHHhhCceEEe---cCChHHHHHH
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEA---FNEMESLVRN----HPRLLLTPFLH--SMDLAYAAADLIVS---RAGAMTCYEI 70 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~---~~~l~~~~~~----~~~v~~~~~~~--~~~~~l~~ad~~i~---~~G~~t~~Ea 70 (159)
..+-+|++.=|+=.+++-.|+.+ .+.++.+++. ..++.|.+-.+ .+..-+..||+|+- .+|+.|.+|+
T Consensus 448 ~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~da 527 (620)
T COG3914 448 ALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDA 527 (620)
T ss_pred HHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHH
Confidence 46778999988866655555321 3444444332 34888888775 46677899999993 3567888999
Q ss_pred HHhCCcEEEecCCCCCCchHHHH---HHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CC
Q 031484 71 LATGKPSILIPSPNVAEGHQFKN---ASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALKAAK---PG 144 (159)
Q Consensus 71 l~~g~P~I~~p~~~~~~~~q~~~---~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~---~~ 144 (159)
+-+|+||+... ++++.. +..+.+.|.--.+-.. .++-.+.-..+=+|...+++.+...++-.. =.
T Consensus 528 Lwm~vPVlT~~------G~~FasR~~~si~~~agi~e~vA~s---~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~ 598 (620)
T COG3914 528 LWMGVPVLTRV------GEQFASRNGASIATNAGIPELVADS---RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLF 598 (620)
T ss_pred HHhcCceeeec------cHHHHHhhhHHHHHhcCCchhhcCC---HHHHHHHHHHhcccHHHHHhhHHHHHhccccCccc
Confidence 99999999864 343321 2333444442222221 344333333455677666666655433322 23
Q ss_pred hHHHHHHHHHHh
Q 031484 145 ASADIAQHILSL 156 (159)
Q Consensus 145 ~~~~~~~~i~~~ 156 (159)
..+..+..++.+
T Consensus 599 d~~~far~le~~ 610 (620)
T COG3914 599 DPKAFARKLETL 610 (620)
T ss_pred CHHHHHHHHHHH
Confidence 566677776654
No 152
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.90 E-value=0.012 Score=45.06 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred hhHHHHHhhc--CCeeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhCCcE
Q 031484 3 NLYYQMLMEK--HNLFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
+.|.++.+.- .++++++++|.. +.+..++..+..++..+.+.. .++..+++.||++|+.-. +.+-=|.++|+|+
T Consensus 198 e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DS-gp~HlAaa~g~P~ 276 (319)
T TIGR02193 198 ERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAVVGVDT-GLTHLAAALDKPT 276 (319)
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEEEeCCC-hHHHHHHHcCCCE
Confidence 3455554442 367887765654 333333333333444555544 478899999999998533 2335578999999
Q ss_pred EEecCCCCCCchHHHHHHHHHHcCceeeec--cCCCChhHHHHHHHHHh
Q 031484 78 ILIPSPNVAEGHQFKNASLMAKLADSRIIT--EDELDSITLETTIEEIL 124 (159)
Q Consensus 78 I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~--~~~~~~~~l~~~l~~ll 124 (159)
|.+-.+ ....+... .. ....++.. .++++++++.+++++++
T Consensus 277 i~lfg~--t~p~~~~P---~~-~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 277 VTLYGA--TDPGRTGG---YG-KPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EEEECC--CCHhhccc---CC-CCceEEccCccCCCCHHHHHHHHHhhC
Confidence 987322 11111110 11 11111211 36677888888887654
No 153
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.34 E-value=0.029 Score=42.18 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=43.0
Q ss_pred CeeEEEEcCcccHHHHHHHhhc--CCC-eEEeccc--ccHHHHHhhCceEEec-CChHHHHHHHHhCCcEEEe
Q 031484 14 NLFIIWQTGVEAFNEMESLVRN--HPR-LLLTPFL--HSMDLAYAAADLIVSR-AGAMTCYEILATGKPSILI 80 (159)
Q Consensus 14 ~~~~~~~~G~~~~~~l~~~~~~--~~~-v~~~~~~--~~~~~~l~~ad~~i~~-~G~~t~~Eal~~g~P~I~~ 80 (159)
++++++.+|+.+.+..++.... .++ +.+.+.. .++..+++.||++|+. +|+ +-=|.++|+|+|++
T Consensus 153 ~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Dsg~--~HlA~a~~~p~i~l 223 (279)
T cd03789 153 GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSGP--MHLAAALGTPTVAL 223 (279)
T ss_pred CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCCHH--HHHHHHcCCCEEEE
Confidence 7888887776654444443322 122 3344443 4788999999999986 443 34567999999987
No 154
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.18 E-value=0.04 Score=42.39 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=48.0
Q ss_pred hHHHHHhh--cCCeeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 4 LYYQMLME--KHNLFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
.|.++.+. ..++++++..|.. +.+..++..+..+++.+.+.. .++..+++.||++|+.-. +.+-=|.++|+|+|
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDS-Gp~HlA~A~g~p~v 276 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDT-GLSHLTAALDRPNI 276 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCC-cHHHHHHHhCCCEE
Confidence 44555444 2366776654543 333333333333456666644 478899999999998533 34456899999999
Q ss_pred Ee
Q 031484 79 LI 80 (159)
Q Consensus 79 ~~ 80 (159)
++
T Consensus 277 al 278 (322)
T PRK10964 277 TL 278 (322)
T ss_pred EE
Confidence 87
No 155
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=96.01 E-value=0.28 Score=40.15 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred hhhHHHHHhhcCCee--E-EEEcCcc------cHH----HHHHHhhc------C---CCeEEecc-c--ccHHHHHhhCc
Q 031484 2 LNLYYQMLMEKHNLF--I-IWQTGVE------AFN----EMESLVRN------H---PRLLLTPF-L--HSMDLAYAAAD 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~--~-~~~~G~~------~~~----~l~~~~~~------~---~~v~~~~~-~--~~~~~~l~~ad 56 (159)
+.+|+++|+++|+++ + +++.+.. .+. ++.+++.. . ..|.++.. . .+...+|+.||
T Consensus 295 l~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aD 374 (474)
T PF00982_consen 295 LRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAAD 374 (474)
T ss_dssp HHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-S
T ss_pred HHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhh
Confidence 468999999999875 2 3333431 122 33333311 1 13544432 3 36788999999
Q ss_pred eEEecC---Ch-HHHHHHHHhCCc--EE--EecCCCCCCchHHHHHHHHHHcC-ceeeeccCCCChhHHHHHHHHHhcCH
Q 031484 57 LIVSRA---GA-MTCYEILATGKP--SI--LIPSPNVAEGHQFKNASLMAKLA-DSRIITEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 57 ~~i~~~---G~-~t~~Eal~~g~P--~I--~~p~~~~~~~~q~~~~~~~~~~~-~g~~~~~~~~~~~~l~~~l~~ll~~~ 127 (159)
+++..+ |. .+..|..++..+ -+ +..+.+ . ....+ .++.+++-| .+.++++|.+.|.-|
T Consensus 375 v~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaG--------a---a~~L~~~al~VNP~d--~~~~A~ai~~AL~M~ 441 (474)
T PF00982_consen 375 VALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAG--------A---AEQLSEAALLVNPWD--IEEVADAIHEALTMP 441 (474)
T ss_dssp EEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBG--------G---GGT-TTS-EEE-TT---HHHHHHHHHHHHT--
T ss_pred hEEecchhhccCCcceEEEEEecCCCCceEeeccCC--------H---HHHcCCccEEECCCC--hHHHHHHHHHHHcCC
Confidence 988644 53 456898888776 33 333321 1 12234 346777766 899999999999854
Q ss_pred -HHHHHHHHHHHhcCC
Q 031484 128 -ALMAEMSERALKAAK 142 (159)
Q Consensus 128 -~~~~~~~~~~~~~~~ 142 (159)
+.|+...+...+...
T Consensus 442 ~~Er~~r~~~~~~~v~ 457 (474)
T PF00982_consen 442 PEERKERHARLREYVR 457 (474)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH
Confidence 344444344444433
No 156
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=96.00 E-value=0.17 Score=41.24 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=73.6
Q ss_pred hhhHHHHHhhcCCee---EEEEcCcc------cHHHH----HHHhhc------CC---CeEEe-cccc--cHHHHHhhCc
Q 031484 2 LNLYYQMLMEKHNLF---IIWQTGVE------AFNEM----ESLVRN------HP---RLLLT-PFLH--SMDLAYAAAD 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~---~~~~~G~~------~~~~l----~~~~~~------~~---~v~~~-~~~~--~~~~~l~~ad 56 (159)
+.+|+++|+++|+++ ++++.... .+.++ ++++.. .. .|..+ ...+ ++..+|..||
T Consensus 274 l~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~AD 353 (474)
T PRK10117 274 FLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSD 353 (474)
T ss_pred HHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhcc
Confidence 468999999999875 23333321 23333 333321 11 23322 2222 5668899999
Q ss_pred eEEecC---ChH-HHHHHHHhCC---c--EEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCH
Q 031484 57 LIVSRA---GAM-TCYEILATGK---P--SILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 57 ~~i~~~---G~~-t~~Eal~~g~---P--~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~ 127 (159)
+++..+ |.+ +..|..+|.. | .|++.+.+ .+..+ +.++.+++-| .+.++++|.+.+.-|
T Consensus 354 v~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAG--------aA~~L---~~AllVNP~d--~~~~A~Ai~~AL~Mp 420 (474)
T PRK10117 354 VGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG--------AANEL---TSALIVNPYD--RDEVAAALDRALTMP 420 (474)
T ss_pred EEEecccccccccccchheeeecCCCCccEEEecccc--------hHHHh---CCCeEECCCC--HHHHHHHHHHHHcCC
Confidence 988655 643 4568888865 3 33333321 23333 3466777766 899999999999854
Q ss_pred -HHHHHHHHHHHhcCCCC
Q 031484 128 -ALMAEMSERALKAAKPG 144 (159)
Q Consensus 128 -~~~~~~~~~~~~~~~~~ 144 (159)
+.|++..+.+.+....+
T Consensus 421 ~~Er~~R~~~l~~~v~~~ 438 (474)
T PRK10117 421 LAERISRHAEMLDVIVKN 438 (474)
T ss_pred HHHHHHHHHHHHHHhhhC
Confidence 34433333344444333
No 157
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=95.82 E-value=0.62 Score=35.94 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=70.1
Q ss_pred hhHHHHHhhc-CCeeEEEEcCc--cc---HHHHHHHhhc---CCCeEEe-cccc--cHHHHHhhCceEEec----CChHH
Q 031484 3 NLYYQMLMEK-HNLFIIWQTGV--EA---FNEMESLVRN---HPRLLLT-PFLH--SMDLAYAAADLIVSR----AGAMT 66 (159)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~G~--~~---~~~l~~~~~~---~~~v~~~-~~~~--~~~~~l~~ad~~i~~----~G~~t 66 (159)
+++..+-+.. .++++++..|- ++ .+++++.... .+++.++ .+.+ +...+++.||+.+.. -|-+|
T Consensus 163 e~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGn 242 (322)
T PRK02797 163 EALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGT 242 (322)
T ss_pred HHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhH
Confidence 4455554443 57788887775 33 2444443322 2467644 4443 677889999998852 36788
Q ss_pred HHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHH
Q 031484 67 CYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETT 119 (159)
Q Consensus 67 ~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 119 (159)
+.-++.+|+|+.+.... . .++.+.+.|.-+....++++...+.++
T Consensus 243 l~lLi~~G~~v~l~r~n-----~---fwqdl~e~gv~Vlf~~d~L~~~~v~e~ 287 (322)
T PRK02797 243 LCLLIQLGKPVVLSRDN-----P---FWQDLTEQGLPVLFTGDDLDEDIVREA 287 (322)
T ss_pred HHHHHHCCCcEEEecCC-----c---hHHHHHhCCCeEEecCCcccHHHHHHH
Confidence 89999999999987432 1 355678888887666666655544443
No 158
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.63 E-value=0.087 Score=38.73 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=43.9
Q ss_pred hhHHHHHhhcC--CeeEEEEcCccc-HHHH-HHHhhcC--CCeEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhC
Q 031484 3 NLYYQMLMEKH--NLFIIWQTGVEA-FNEM-ESLVRNH--PRLLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATG 74 (159)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~G~~~-~~~l-~~~~~~~--~~v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g 74 (159)
+.|.++.+.-. .+++++.+|+.+ ..+. +...... +.+.+.+-. .++..+++.||++|+.-.+ .+-=|.++|
T Consensus 124 e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~Dtg-~~HlA~a~~ 202 (247)
T PF01075_consen 124 EKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRADLVIGNDTG-PMHLAAALG 202 (247)
T ss_dssp HHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSSEEEEESSH-HHHHHHHTT
T ss_pred HHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCCEEEecCCh-HHHHHHHHh
Confidence 34555555522 267766655554 2333 2333221 245565544 4788999999999985443 446689999
Q ss_pred CcEEEe
Q 031484 75 KPSILI 80 (159)
Q Consensus 75 ~P~I~~ 80 (159)
+|+|.+
T Consensus 203 ~p~v~l 208 (247)
T PF01075_consen 203 TPTVAL 208 (247)
T ss_dssp --EEEE
T ss_pred CCEEEE
Confidence 999987
No 159
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=95.56 E-value=0.29 Score=41.03 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=56.4
Q ss_pred cHHHHHhhCceEEecCC----hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-----cCcee-eeccCCCChhHH
Q 031484 47 SMDLAYAAADLIVSRAG----AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK-----LADSR-IITEDELDSITL 116 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-----~~~g~-~~~~~~~~~~~l 116 (159)
+..+++..||+.|.+|= +-|.+|+.++|+|.|.+...++ ..++.+ ...|+ ++...+-+.+..
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF--------G~~~~~~~~~~~~~GV~VvdR~~~n~~e~ 533 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF--------GCWMQEHIEDPEEYGVYVVDRRDKNYDES 533 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH--------HHHHHTTS-HHGGGTEEEE-SSSS-HHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH--------HHHHHHhhccCcCCcEEEEeCCCCCHHHH
Confidence 57899999999998771 3467999999999999987632 112221 22344 344444445554
Q ss_pred HHH----HHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHH
Q 031484 117 ETT----IEEILG-NEALMAEMSERALKAAKPGASADIAQ 151 (159)
Q Consensus 117 ~~~----l~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (159)
++. +.++.. +...|..++.++.++++.-.|+++..
T Consensus 534 v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~ 573 (633)
T PF05693_consen 534 VNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGK 573 (633)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 444 444443 34455677777778777767766633
No 160
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.52 E-value=0.11 Score=40.11 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=46.6
Q ss_pred hHHHHHhh--cCCeeEEEEcCcccHHHHHHHhhcC-CCe-EEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhCCcE
Q 031484 4 LYYQMLME--KHNLFIIWQTGVEAFNEMESLVRNH-PRL-LLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~~~~~l~~~~~~~-~~v-~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
.|.++.+. ..++++++.+|+.+.+..++..... +++ .+.+.. .++..+++.||++|+.-.+ .+-=|.++|+|+
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSG-p~HlAaA~~~P~ 273 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAKAVVTNDSG-LMHVAAALNRPL 273 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCCEEEeeCCH-HHHHHHHcCCCE
Confidence 34444433 1357887776665544333332222 222 244533 4788999999999985432 345688999999
Q ss_pred EEe
Q 031484 78 ILI 80 (159)
Q Consensus 78 I~~ 80 (159)
|.+
T Consensus 274 i~l 276 (334)
T TIGR02195 274 VAL 276 (334)
T ss_pred EEE
Confidence 987
No 161
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.092 Score=40.79 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=42.3
Q ss_pred eeEEEEcCcccHHHHHHHhhcCCCeE-Eeccc--ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEe
Q 031484 15 LFIIWQTGVEAFNEMESLVRNHPRLL-LTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 15 ~~~~~~~G~~~~~~l~~~~~~~~~v~-~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
+++++.+|+.+.+..+++.+..++.. +.+-. .++..++..||++|+.-.+- +-=|.+.|+|+|.+
T Consensus 209 ~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~-~HlAaA~~~P~I~i 276 (334)
T COG0859 209 YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSGP-MHLAAALGTPTIAL 276 (334)
T ss_pred CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEEEccCChH-HHHHHHcCCCEEEE
Confidence 67766666633444444443334332 55544 47889999999999854332 34588999999987
No 162
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.42 E-value=0.12 Score=40.23 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=46.9
Q ss_pred hHHHHHhh--cCCeeEEEEcCcccHHHHHHHhhcC-----CC-eEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHh
Q 031484 4 LYYQMLME--KHNLFIIWQTGVEAFNEMESLVRNH-----PR-LLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILAT 73 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~~~~~l~~~~~~~-----~~-v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~ 73 (159)
.|.++.+. ..++++++.+|+.+.+..++..+.. ++ +.+.+-. .++..+++.|+++|+.-. +.+-=|.+.
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-Gp~HlAaA~ 279 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-GLMHVAAAL 279 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-hHHHHHHHh
Confidence 34555443 3467887776665544333332211 12 3344543 578889999999998433 234568999
Q ss_pred CCcEEEe
Q 031484 74 GKPSILI 80 (159)
Q Consensus 74 g~P~I~~ 80 (159)
|+|+|.+
T Consensus 280 g~P~val 286 (348)
T PRK10916 280 NRPLVAL 286 (348)
T ss_pred CCCEEEE
Confidence 9999986
No 163
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=95.38 E-value=0.29 Score=38.40 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=76.1
Q ss_pred CCeeEEEEcCcc---cHHHH---HHHhhc---CCCeEEecccc--cHHHHHhhCceEEe-----cCChHHHHHHHHhCCc
Q 031484 13 HNLFIIWQTGVE---AFNEM---ESLVRN---HPRLLLTPFLH--SMDLAYAAADLIVS-----RAGAMTCYEILATGKP 76 (159)
Q Consensus 13 ~~~~~~~~~G~~---~~~~l---~~~~~~---~~~v~~~~~~~--~~~~~l~~ad~~i~-----~~G~~t~~Eal~~g~P 76 (159)
++++++++++.. +.+.+ +.+... .+++.+.-..| ++.+++..|.+-|. |-| .++.|+||+|+=
T Consensus 304 ~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFG-IsVVEyMAAGlI 382 (465)
T KOG1387|consen 304 SPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFG-ISVVEYMAAGLI 382 (465)
T ss_pred CCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcc-hhHHHHHhcCce
Confidence 456777666543 23333 332222 45777775554 68899999988885 334 567899999987
Q ss_pred EEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 031484 77 SILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG-NEALMAEMSERALKAAKPGASADIAQHIL 154 (159)
Q Consensus 77 ~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
.|+-... ++-.....--.-...|+..+. .+.-++++.+++. +++.|..|+++++.-....+-.+..+...
T Consensus 383 pi~h~Sg----GP~lDIV~~~~G~~tGFla~t----~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~ 453 (465)
T KOG1387|consen 383 PIVHNSG----GPLLDIVTPWDGETTGFLAPT----DEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWE 453 (465)
T ss_pred EEEeCCC----CCceeeeeccCCccceeecCC----hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Confidence 7765432 210000000011234555432 4566777777764 66778888888766554445544444443
No 164
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.35 E-value=0.2 Score=42.17 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=79.9
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcc-cHHHHHHHh---hc-CCCeEEecccc--cHHHHHhhCceEEe---cCChHHHHHHH
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVE-AFNEMESLV---RN-HPRLLLTPFLH--SMDLAYAAADLIVS---RAGAMTCYEIL 71 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~~~---~~-~~~v~~~~~~~--~~~~~l~~ad~~i~---~~G~~t~~Eal 71 (159)
++.|..+|.+-|+-.+.+.+=+- -...+...+ +- ..+|.|.+-.. +--.-.+.+|+++- ..|..|-++.+
T Consensus 776 l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvL 855 (966)
T KOG4626|consen 776 LQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVL 855 (966)
T ss_pred HHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchhhh
Confidence 57788999998875553322221 012222222 21 34777766553 23344567888873 24767779999
Q ss_pred HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCHHHHHHHHHHHHh
Q 031484 72 ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNEALMAEMSERALK 139 (159)
Q Consensus 72 ~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~ 139 (159)
-+|+|+|..|.... .+ ...++.+...|.|-.+... .+.-.+...++-.|.++.+.++...+.
T Consensus 856 w~GvPmVTmpge~l--As-rVa~Sll~~~Gl~hliak~---~eEY~~iaV~Latd~~~L~~lr~~l~~ 917 (966)
T KOG4626|consen 856 WAGVPMVTMPGETL--AS-RVAASLLTALGLGHLIAKN---REEYVQIAVRLATDKEYLKKLRAKLRK 917 (966)
T ss_pred ccCCceeecccHHH--HH-HHHHHHHHHcccHHHHhhh---HHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 99999999876321 12 2235667778888765432 345555556677788877777766543
No 165
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.57 Score=35.40 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=28.0
Q ss_pred HHHHHhhCceEEecCCh-HHHHHHHHhCCcEEEec
Q 031484 48 MDLAYAAADLIVSRAGA-MTCYEILATGKPSILIP 81 (159)
Q Consensus 48 ~~~~l~~ad~~i~~~G~-~t~~Eal~~g~P~I~~p 81 (159)
...+|+.||.+|+.+-. +-+.||++.|+|+-+.-
T Consensus 238 Y~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~ 272 (329)
T COG3660 238 YIDMLAAADYIISTADSINMCSEAASTGKPVFILE 272 (329)
T ss_pred hHHHHhhcceEEEecchhhhhHHHhccCCCeEEEe
Confidence 56889999999986653 45789999999999863
No 166
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.14 E-value=0.18 Score=39.34 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=46.9
Q ss_pred hHHHHHhh--cCCeeEEEEcCccc--HHHHHHHhhc--CC-CeEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhC
Q 031484 4 LYYQMLME--KHNLFIIWQTGVEA--FNEMESLVRN--HP-RLLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATG 74 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~~--~~~l~~~~~~--~~-~v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g 74 (159)
.|.++.+. ..++++++++|+.. .+..++..+. .+ .+.+.|.. .++..+++.||++|+.-.+ .+-=|.++|
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSG-p~HlAaA~g 281 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSA-PAHIAAAVN 281 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCH-HHHHHHHcC
Confidence 44455444 24678887777643 2222333221 22 23455544 5888999999999985432 345688999
Q ss_pred CcEEEe
Q 031484 75 KPSILI 80 (159)
Q Consensus 75 ~P~I~~ 80 (159)
+|+|.+
T Consensus 282 ~P~v~l 287 (352)
T PRK10422 282 TPLICL 287 (352)
T ss_pred CCEEEE
Confidence 999986
No 167
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.44 E-value=0.31 Score=37.80 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=46.2
Q ss_pred hHHHHHhh--cCCeeEEEEcCccc--HHHHHHHhhc--CCC-eEEeccc--ccHHHHHhhCceEEecCChHHHHHHHHhC
Q 031484 4 LYYQMLME--KHNLFIIWQTGVEA--FNEMESLVRN--HPR-LLLTPFL--HSMDLAYAAADLIVSRAGAMTCYEILATG 74 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~~--~~~l~~~~~~--~~~-v~~~~~~--~~~~~~l~~ad~~i~~~G~~t~~Eal~~g 74 (159)
.|.++.+. ..++++++++|+.. .+..++.... .++ +.+.|.. .++..+++.||++|+.-. +.+-=|.++|
T Consensus 201 ~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DS-Gp~HlAaA~g 279 (344)
T TIGR02201 201 RFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDS-VPMHMAAALG 279 (344)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCC-HHHHHHHHcC
Confidence 34444443 23678877766542 2222332221 223 3345543 488999999999998533 3445689999
Q ss_pred CcEEEe
Q 031484 75 KPSILI 80 (159)
Q Consensus 75 ~P~I~~ 80 (159)
+|+|.+
T Consensus 280 ~p~v~L 285 (344)
T TIGR02201 280 TPLVAL 285 (344)
T ss_pred CCEEEE
Confidence 999986
No 168
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=94.34 E-value=2.5 Score=35.74 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=71.6
Q ss_pred CCeEEe-cccccHH-HHHhhCceEEe-c------CChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeec
Q 031484 37 PRLLLT-PFLHSMD-LAYAAADLIVS-R------AGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIIT 107 (159)
Q Consensus 37 ~~v~~~-~~~~~~~-~~l~~ad~~i~-~------~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~ 107 (159)
.+|.++ +|-..+. .+++.||+.+- + +| .|-+-++..|.+.+.+....+. +. .+.++|+.+.
T Consensus 458 ~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacG-tsqMka~~nGgL~~sv~DG~~~--------E~-~~~~nGf~f~ 527 (601)
T TIGR02094 458 GRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASG-TSGMKAAMNGVLNLSILDGWWG--------EG-YDGDNGWAIG 527 (601)
T ss_pred CCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCch-HHHHHHHHcCCceeecccCccc--------cc-CCCCcEEEEC
Confidence 366654 5654544 56699999885 2 34 4557899999999988543211 11 2457888887
Q ss_pred c----------CCCChhHHHHHHHHHh-----cCH------HHHHHHHHHHHhcCCCChHHHHHHHHHHh
Q 031484 108 E----------DELDSITLETTIEEIL-----GNE------ALMAEMSERALKAAKPGASADIAQHILSL 156 (159)
Q Consensus 108 ~----------~~~~~~~l~~~l~~ll-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 156 (159)
. ++.+++.|.+.|++.+ +++ .+.+.|+..+.......++.++++.-.++
T Consensus 528 ~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~ 597 (601)
T TIGR02094 528 DGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDK 597 (601)
T ss_pred CCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3 1345888888886544 221 25566677677777778999988765543
No 169
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=94.34 E-value=1.9 Score=38.07 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=66.2
Q ss_pred hhhHHHHHhhcCCee--E-EEEcC-c-----ccHHHHH----HHhhc------C---CCeEEec-cc--ccHHHHHhhCc
Q 031484 2 LNLYYQMLMEKHNLF--I-IWQTG-V-----EAFNEME----SLVRN------H---PRLLLTP-FL--HSMDLAYAAAD 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~--~-~~~~G-~-----~~~~~l~----~~~~~------~---~~v~~~~-~~--~~~~~~l~~ad 56 (159)
+.+|+++|+.||+++ + +++.. + ..+.+++ +.++. . ..|.++. .+ .++..+|+.||
T Consensus 358 l~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~AD 437 (854)
T PLN02205 358 LLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAE 437 (854)
T ss_pred HHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhcc
Confidence 468999999999884 2 23332 2 1233333 32211 1 1344432 22 25778899999
Q ss_pred eEEecC---ChH-HHHHHHHhCC------------------cEEE-ecCCCCCCchHHHHHHHHHHcCceeeeccCCCCh
Q 031484 57 LIVSRA---GAM-TCYEILATGK------------------PSIL-IPSPNVAEGHQFKNASLMAKLADSRIITEDELDS 113 (159)
Q Consensus 57 ~~i~~~---G~~-t~~Eal~~g~------------------P~I~-~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~ 113 (159)
+++..+ |.+ +..|..+|.. .+++ ..+. +-+..+ +.++.+++.| .
T Consensus 438 v~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfa--------Gaa~~L---~~Ai~VNP~d--~ 504 (854)
T PLN02205 438 CCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFI--------GCSPSL---SGAIRVNPWN--I 504 (854)
T ss_pred EEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeecc--------chhHHh---CcCeEECCCC--H
Confidence 988655 543 4568777753 2333 2222 122223 3466777766 8
Q ss_pred hHHHHHHHHHhcCH
Q 031484 114 ITLETTIEEILGNE 127 (159)
Q Consensus 114 ~~l~~~l~~ll~~~ 127 (159)
+.++++|.+.+..|
T Consensus 505 ~~~a~ai~~AL~m~ 518 (854)
T PLN02205 505 DAVADAMDSALEMA 518 (854)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999854
No 170
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=94.07 E-value=2.5 Score=33.77 Aligned_cols=101 Identities=11% Similarity=0.167 Sum_probs=65.2
Q ss_pred ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHH-HH---HHHcCceeeeccCCCChhHHHHHHH
Q 031484 46 HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNA-SL---MAKLADSRIITEDELDSITLETTIE 121 (159)
Q Consensus 46 ~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~-~~---~~~~~~g~~~~~~~~~~~~l~~~l~ 121 (159)
.++.++|..+|+.||.-. .+..|.+...+|+|.--. +.++.... .+ .....-|.++.. .+.+.+++.
T Consensus 278 ~di~dll~~sDiLITDyS-Sv~fdf~~l~KPiify~~----D~~~y~~~rg~~~d~~~~~Pg~~~~~----~~~li~ai~ 348 (388)
T COG1887 278 ADINDLLLVSDILITDYS-SVIFDFMLLDKPIIFYTY----DLEQYDELRGFYLDYKFEAPGEVVET----QEELIDAIK 348 (388)
T ss_pred hhHHHHHhhhCEEEeech-HHHHHHHHhcCcEEEEec----ChHHHHhhhhhhhhHHhcCCcccccc----HHHHHHHHH
Confidence 378999999999999644 467899999999998522 23333111 11 122344555543 567888888
Q ss_pred HHhcCH----HHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 031484 122 EILGNE----ALMAEMSERALKAAKPGASADIAQHILS 155 (159)
Q Consensus 122 ~ll~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (159)
....++ ..++...+.......+++.+++++.+.+
T Consensus 349 ~~~~~~~~~~~k~~~~~~~~~~~~dg~ss~ri~~~i~~ 386 (388)
T COG1887 349 PYDEDGNYDLEKLRVFNDKFNSYEDGRSSERILKLIFK 386 (388)
T ss_pred hhhcccchhHHHHHHHHHhhcccccccHHHHHHHHHhc
Confidence 877743 3334444555555567788888887764
No 171
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=93.59 E-value=0.21 Score=33.37 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=27.7
Q ss_pred HHHHHhhCceEEecCC-----hHHHHH---HHHhCCcEEEecC
Q 031484 48 MDLAYAAADLIVSRAG-----AMTCYE---ILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l~~ad~~i~~~G-----~~t~~E---al~~g~P~I~~p~ 82 (159)
...++..||++|.+-| +++.+. ++++|+|.|++..
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~ 108 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHP 108 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecc
Confidence 4578999999999887 455444 7889999999843
No 172
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=93.53 E-value=3.6 Score=33.84 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred hhhHHHHHhhcCCee---EEEEcCcc---c---HH----HHHHHhhc---------CCCeEEecc-c--ccHHHHHhhCc
Q 031484 2 LNLYYQMLMEKHNLF---IIWQTGVE---A---FN----EMESLVRN---------HPRLLLTPF-L--HSMDLAYAAAD 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~---~~~~~G~~---~---~~----~l~~~~~~---------~~~v~~~~~-~--~~~~~~l~~ad 56 (159)
+.+|+++|+.+|.++ ++++++.. . +. ++++.+.. -+.|.++.- . +++..++..||
T Consensus 301 l~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aD 380 (486)
T COG0380 301 LLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAAD 380 (486)
T ss_pred HHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhc
Confidence 468999999998775 33444442 1 21 22222211 123433332 2 25778889999
Q ss_pred eEEecC---Ch-HHHHHHHHhCC----cEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcCH-
Q 031484 57 LIVSRA---GA-MTCYEILATGK----PSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGNE- 127 (159)
Q Consensus 57 ~~i~~~---G~-~t~~Eal~~g~----P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~~- 127 (159)
+++..+ |. .+..|..++.- |.|.+.+.+ .+..+. .++++++.| .+.+++++.+.|.-+
T Consensus 381 v~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaG--------aa~~L~---~AliVNP~d--~~~va~ai~~AL~m~~ 447 (486)
T COG0380 381 VMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAG--------AASELR---DALIVNPWD--TKEVADAIKRALTMSL 447 (486)
T ss_pred eeeeccccccccHHHHHHHHhhcCCCCcEEEecccc--------chhhhc---cCEeECCCC--hHHHHHHHHHHhcCCH
Confidence 988544 53 34567666543 444444432 222332 367787766 889999999999743
Q ss_pred HHH-HHHHHHHHhc
Q 031484 128 ALM-AEMSERALKA 140 (159)
Q Consensus 128 ~~~-~~~~~~~~~~ 140 (159)
+.+ ++++...+..
T Consensus 448 eEr~~r~~~~~~~v 461 (486)
T COG0380 448 EERKERHEKLLKQV 461 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 333 3333333333
No 173
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=92.99 E-value=2.8 Score=36.61 Aligned_cols=108 Identities=10% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCeEEe-cccccHH-HHHhhCceEEec-------CChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeec
Q 031484 37 PRLLLT-PFLHSMD-LAYAAADLIVSR-------AGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIIT 107 (159)
Q Consensus 37 ~~v~~~-~~~~~~~-~~l~~ad~~i~~-------~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~ 107 (159)
.+|.|+ +|-..+. .+++.||+.+.. ||+ +-+-++.-|.+.+.+....+.+. .+.++|+.++
T Consensus 547 ~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGT-SgMKA~~NG~LnlSvlDGww~E~---------~~g~nGwaig 616 (778)
T cd04299 547 GRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGT-SGMKAALNGGLNLSVLDGWWDEG---------YDGENGWAIG 616 (778)
T ss_pred CcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCcc-chHHHHHcCCeeeecccCccccc---------cCCCCceEeC
Confidence 366654 5655555 556999998843 454 45789999999999865433221 1346788876
Q ss_pred cCC----------CChhHHHHHHHH-Hh---cC------H-HHHHHHHHHHHhcCCCChHHHHHHHHH
Q 031484 108 EDE----------LDSITLETTIEE-IL---GN------E-ALMAEMSERALKAAKPGASADIAQHIL 154 (159)
Q Consensus 108 ~~~----------~~~~~l~~~l~~-ll---~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
.++ .+++.|.+.|++ ++ .+ | .+.+.|+..+..++...++.++++.-.
T Consensus 617 ~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~ 684 (778)
T cd04299 617 DGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYV 684 (778)
T ss_pred CCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 621 446667777754 32 12 2 466778888888888888888866543
No 174
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=92.70 E-value=1.2 Score=31.48 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=26.2
Q ss_pred cHHHHHhhCceEEecCC-hHHHHHHHH---------hCCcEEEecC
Q 031484 47 SMDLAYAAADLIVSRAG-AMTCYEILA---------TGKPSILIPS 82 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G-~~t~~Eal~---------~g~P~I~~p~ 82 (159)
....++..||++|.-+| .+|+-|.+. .++|+++...
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~ 134 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNV 134 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 45567789999987555 688777543 3999998753
No 175
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=92.05 E-value=0.39 Score=39.79 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=48.6
Q ss_pred cHHHHHhhCceEEecCC---hHHHHHHHHhCCcEEEecCCCCCCchHHHHHH----------------HHH-HcCceee-
Q 031484 47 SMDLAYAAADLIVSRAG---AMTCYEILATGKPSILIPSPNVAEGHQFKNAS----------------LMA-KLADSRI- 105 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G---~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~----------------~~~-~~~~g~~- 105 (159)
++..+++.+.++|+-+. +-+.+||++.|+|+|--... ..+...|.+ +++ ..|.-.+
T Consensus 334 ef~~lL~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~---pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVy 410 (559)
T PF15024_consen 334 EFQQLLRKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFN---PPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVY 410 (559)
T ss_pred HHHHHHHhhhEeeecCCCCCCCChHHHHHcCCccccccCC---CCCcccccccccCCCCcceeccCChHHHhhCCCCeEE
Confidence 68899999999998653 35679999999999953221 011111111 122 1344444
Q ss_pred -eccCCCChhHHHHHHHHHhcCH
Q 031484 106 -ITEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 106 -~~~~~~~~~~l~~~l~~ll~~~ 127 (159)
+..++ .+++.+++.+++.++
T Consensus 411 tVd~~n--~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 411 TVDINN--STEVEAAVKAILATP 431 (559)
T ss_pred EEcCCC--HHHHHHHHHHHHhcC
Confidence 33444 789999999998764
No 176
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=91.95 E-value=0.34 Score=31.38 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=26.0
Q ss_pred HHHHhhCceEEe---c--CChHHHHH---HHHhCCcEEEecC
Q 031484 49 DLAYAAADLIVS---R--AGAMTCYE---ILATGKPSILIPS 82 (159)
Q Consensus 49 ~~~l~~ad~~i~---~--~G~~t~~E---al~~g~P~I~~p~ 82 (159)
-+.+..||++|. . ...+|.+| |.+.|+|+++...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 367899999884 2 45789999 7789999998744
No 177
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=91.60 E-value=2.7 Score=33.47 Aligned_cols=77 Identities=31% Similarity=0.270 Sum_probs=53.0
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCc-eeeeccCCCChhHHHHHHHHHhc
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLAD-SRIITEDELDSITLETTIEEILG 125 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~-g~~~~~~~~~~~~l~~~l~~ll~ 125 (159)
.+-..+..||++|+ .-..++.=|++.|+|+|.+.+. ......+.+.|. ++.++..+++.+.+...+.+.+.
T Consensus 278 ~~~~~l~~~dl~Vg-~R~HsaI~al~~g~p~i~i~Y~-------~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 278 ELGGILAACDLIVG-MRLHSAIMALAFGVPAIAIAYD-------PKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLT 349 (385)
T ss_pred HHHHHhccCceEEe-ehhHHHHHHHhcCCCeEEEeec-------HHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHh
Confidence 45567899999998 3466778999999999998653 123345566555 45566666668888888777764
Q ss_pred -CHHHHH
Q 031484 126 -NEALMA 131 (159)
Q Consensus 126 -~~~~~~ 131 (159)
+++.++
T Consensus 350 ~~~~~~~ 356 (385)
T COG2327 350 KLDELRE 356 (385)
T ss_pred ccHHHHh
Confidence 455443
No 178
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=90.98 E-value=2.3 Score=28.49 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=25.5
Q ss_pred ccHHHHHhhCceEEec-CChHHHHHHHHh---------CC-cEEEecC
Q 031484 46 HSMDLAYAAADLIVSR-AGAMTCYEILAT---------GK-PSILIPS 82 (159)
Q Consensus 46 ~~~~~~l~~ad~~i~~-~G~~t~~Eal~~---------g~-P~I~~p~ 82 (159)
.....++..||++|.- +|.+|+-|.+.. .+ |+++...
T Consensus 45 ~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 45 ERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 3466778899998864 456897775442 34 9998864
No 179
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.96 E-value=0.52 Score=31.59 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHHhhCceEEecCC-----hHHHHH---HHHhCCcEEEecC
Q 031484 48 MDLAYAAADLIVSRAG-----AMTCYE---ILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l~~ad~~i~~~G-----~~t~~E---al~~g~P~I~~p~ 82 (159)
...++..||++|.+-| .++.+. +.++|+|.|++-.
T Consensus 69 T~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~ 111 (144)
T TIGR03646 69 TRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRP 111 (144)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecc
Confidence 4578899999999887 455444 7889999999843
No 180
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.34 E-value=3.8 Score=25.74 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=37.5
Q ss_pred EEEEcCcc-cHHHHHHHhhcCC-CeEEe----cccc-c--HHHHHhhCceEEecCC------hHHH-HHHHHhCCcEEEe
Q 031484 17 IIWQTGVE-AFNEMESLVRNHP-RLLLT----PFLH-S--MDLAYAAADLIVSRAG------AMTC-YEILATGKPSILI 80 (159)
Q Consensus 17 ~~~~~G~~-~~~~l~~~~~~~~-~v~~~----~~~~-~--~~~~l~~ad~~i~~~G------~~t~-~Eal~~g~P~I~~ 80 (159)
+++++|.+ ....+++.++..+ ...++ ++.+ . ++..+..||++|..-+ ...+ -+|-..++|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 56677733 3455555554322 33333 2232 2 7888899999985333 1122 2355678999988
Q ss_pred cC
Q 031484 81 PS 82 (159)
Q Consensus 81 p~ 82 (159)
..
T Consensus 82 ~~ 83 (97)
T PF10087_consen 82 RS 83 (97)
T ss_pred CC
Confidence 64
No 181
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=88.96 E-value=3.6 Score=29.90 Aligned_cols=35 Identities=26% Similarity=0.197 Sum_probs=29.0
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecC
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPS 82 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~ 82 (159)
++..+++.|+++|+.--.+ ..=|+.+|+|+|.+..
T Consensus 250 ~~~~~~~~~~~~Is~RlH~-~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 250 ELLELISQADLVISMRLHG-AILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHhcCCEEEecCCHH-HHHHHHcCCCEEEEec
Confidence 7889999999999965444 4689999999999854
No 182
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=86.93 E-value=11 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=28.4
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecC
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPS 82 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~ 82 (159)
++..++++||++|+.-= ..+.=|+.+|+|++.+.+
T Consensus 243 e~~~~i~~~~~vI~~Rl-H~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 243 ELLGLFASARLVIGMRL-HALILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHHHhhCCEEEEech-HHHHHHHHcCCCEEEeec
Confidence 67788999999999544 345789999999998854
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.84 E-value=3.5 Score=29.00 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=44.2
Q ss_pred ccHHHHHhhCceEEecC-C---------hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceee-eccCCCChh
Q 031484 46 HSMDLAYAAADLIVSRA-G---------AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRI-ITEDELDSI 114 (159)
Q Consensus 46 ~~~~~~l~~ad~~i~~~-G---------~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~-~~~~~~~~~ 114 (159)
+.+...+..||++|-.- | .-.+-|.+.+++|+|++-.-. ..+ ...+.+.+.+..++ +++++ -+
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrr--sr~--P~v~~ik~~~~v~v~lt~~N--R~ 165 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRR--SRH--PLVQRIKKLGGVYVFLTPEN--RN 165 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecc--cCC--hHHHHhhhcCCEEEEEccch--hh
Confidence 34667778899987422 3 234667888999999873321 112 13445666666666 66655 45
Q ss_pred HHHHHHHHHhc
Q 031484 115 TLETTIEEILG 125 (159)
Q Consensus 115 ~l~~~l~~ll~ 125 (159)
.+...+..+|.
T Consensus 166 ~i~~~Il~~L~ 176 (179)
T COG1618 166 RILNEILSVLK 176 (179)
T ss_pred HHHHHHHHHhc
Confidence 56555555543
No 184
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=85.35 E-value=7.4 Score=24.78 Aligned_cols=66 Identities=9% Similarity=-0.082 Sum_probs=41.6
Q ss_pred eEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc-ccHHHHHhhCceEEecCCh----HHHHH-HHHhCCcEEEec
Q 031484 16 FIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL-HSMDLAYAAADLIVSRAGA----MTCYE-ILATGKPSILIP 81 (159)
Q Consensus 16 ~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~-~~~~~~l~~ad~~i~~~G~----~t~~E-al~~g~P~I~~p 81 (159)
+++++||.+- -+++++.++.++ ++.+.... .++.+.+..+|+++..+-. ..+-| +-..|+|+.+++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 5778888751 355665554432 45555433 3677888999999885541 23344 335689999985
No 185
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.96 E-value=5.1 Score=31.72 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=54.6
Q ss_pred HHHHHhhCceEEec-------CC---hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHH
Q 031484 48 MDLAYAAADLIVSR-------AG---AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLE 117 (159)
Q Consensus 48 ~~~~l~~ad~~i~~-------~G---~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~ 117 (159)
++..+...|+.+.. ++ ++-+.|+++||.|.|.-+.. ..+.+-..|..+++-.+ ..++.
T Consensus 251 v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~---------~~e~~f~pgk~~iv~~d---~kdl~ 318 (373)
T COG4641 251 VPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWK---------DLEKFFKPGKDIIVYQD---SKDLK 318 (373)
T ss_pred hhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHH---------HHHHhcCCchheEEecC---HHHHH
Confidence 55666666666531 23 45679999999998865332 12223334444444332 78999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcC
Q 031484 118 TTIEEILGNEALMAEMSERALKAA 141 (159)
Q Consensus 118 ~~l~~ll~~~~~~~~~~~~~~~~~ 141 (159)
+.+..++.-++.|+++.+.+.+-.
T Consensus 319 ~~~~yll~h~~erkeiae~~ye~V 342 (373)
T COG4641 319 EKLKYLLNHPDERKEIAECAYERV 342 (373)
T ss_pred HHHHHHhcCcchHHHHHHhhHHHH
Confidence 999999999999999988875543
No 186
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=83.53 E-value=10 Score=30.62 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHhhcCCeeEEEEcCccc-HHHHHHHhhcCCCeEEeccc--ccHHHHHh--hCceEEecCC---hHHHHHHHHhCCc
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA-FNEMESLVRNHPRLLLTPFL--HSMDLAYA--AADLIVSRAG---AMTCYEILATGKP 76 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~-~~~l~~~~~~~~~v~~~~~~--~~~~~~l~--~ad~~i~~~G---~~t~~Eal~~g~P 76 (159)
+.++.+.+|++.+++.++.+. .+..++.+...-....+++. .-+.+++. .-|++|..-+ ++++.|+-..|+|
T Consensus 69 v~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p 148 (419)
T COG1519 69 VRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIP 148 (419)
T ss_pred HHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCC
Confidence 466778899999999888764 44444433221111223332 13445553 6777776555 7999999999999
Q ss_pred EEEec
Q 031484 77 SILIP 81 (159)
Q Consensus 77 ~I~~p 81 (159)
++++.
T Consensus 149 ~~LvN 153 (419)
T COG1519 149 LVLVN 153 (419)
T ss_pred EEEEe
Confidence 99983
No 187
>PLN02929 NADH kinase
Probab=83.24 E-value=6.2 Score=30.43 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=45.2
Q ss_pred HHHHhhCceEEecCChHHHHHHHH---hCCcEEEecCCCCCCchHHHHHHHHHH-cCceeeeccCCCChhHHHHHHHHHh
Q 031484 49 DLAYAAADLIVSRAGAMTCYEILA---TGKPSILIPSPNVAEGHQFKNASLMAK-LADSRIITEDELDSITLETTIEEIL 124 (159)
Q Consensus 49 ~~~l~~ad~~i~~~G~~t~~Eal~---~g~P~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~~~~~~~l~~~l~~ll 124 (159)
......+|++|+-+|.+|++-++. .++|++-+.......++-....+.+.. ...|+..... ++++.+.+.+++
T Consensus 59 ~~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~---~~~~~~~L~~il 135 (301)
T PLN02929 59 SQPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT---AEDFEQVLDDVL 135 (301)
T ss_pred ccccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCC---HHHHHHHHHHHH
Confidence 455678999999999999988755 468999885521000010011111221 2356555432 678888888888
Q ss_pred cC
Q 031484 125 GN 126 (159)
Q Consensus 125 ~~ 126 (159)
+.
T Consensus 136 ~g 137 (301)
T PLN02929 136 FG 137 (301)
T ss_pred cC
Confidence 64
No 188
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=83.09 E-value=9.1 Score=24.03 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=40.0
Q ss_pred eEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc-ccHHHHHhhCceEEecCCh----HHHHH-HHHhCCcEEEecC
Q 031484 16 FIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL-HSMDLAYAAADLIVSRAGA----MTCYE-ILATGKPSILIPS 82 (159)
Q Consensus 16 ~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~-~~~~~~l~~ad~~i~~~G~----~t~~E-al~~g~P~I~~p~ 82 (159)
+++++||.+- -..+++.++.++ ++.+.... .+..+.+...|++++.+-- ..+-| +.-.++|+.++|.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcCh
Confidence 4678888852 234555444322 34444332 3566678899999986542 23333 3357899999864
No 189
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.25 E-value=6.1 Score=29.88 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.8
Q ss_pred hhCceEEecCChHHHHHHHH------hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA------TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~------~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++. .++|++-+..
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 46899999999999999875 4789887754
No 190
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.06 E-value=5.3 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=24.9
Q ss_pred hhCceEEecCChHHHHHHHHh----CCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILAT----GKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~~----g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++.. ++|++-+..
T Consensus 67 ~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~ 100 (305)
T PRK02649 67 SSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT 100 (305)
T ss_pred cCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC
Confidence 468999999999999988764 789998754
No 191
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.52 E-value=7.1 Score=30.19 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=24.7
Q ss_pred hhCceEEecCChHHHHHHHHh----CCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILAT----GKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~~----g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++.. ++|++-+..
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~ 104 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARAADVPVLGVNL 104 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEec
Confidence 468999999999999987763 789998754
No 192
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.11 E-value=8.3 Score=29.64 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=24.7
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++. .++|++-+..
T Consensus 67 ~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~ 100 (296)
T PRK04539 67 QYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQ 100 (296)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCEEEEec
Confidence 46899999999999998875 3789998754
No 193
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=81.07 E-value=2.1 Score=32.85 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecC
Q 031484 26 FNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPS 82 (159)
Q Consensus 26 ~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~ 82 (159)
.+.++++-+.+++..+..|++.-.++=+.+|++.|.|....+.+.+-.+.+++++|.
T Consensus 88 ~~~v~~~k~~~p~~~vV~YVNssAevKA~sdi~cTSsNA~kIv~~l~~~~~IlF~PD 144 (296)
T PF02445_consen 88 AEDVRELKEEYPDAAVVTYVNSSAEVKAESDICCTSSNAVKIVRSLPQDKKILFLPD 144 (296)
T ss_dssp HHHHHHHHHHSTTS-EEEESSS-HHHHTT-SEEE-TTTHHHHHHCSS-SE-EEEES-
T ss_pred HHHHHHHHHHCCCCeEEEEecChHHHHccCCeEEECccHHHHHHHhcCCCeEEEcCc
Confidence 344544433468899999998878888899999999999899999999999999986
No 194
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.70 E-value=6.8 Score=30.07 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.8
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++. .++|++-+..
T Consensus 63 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~ 96 (292)
T PRK01911 63 GSADMVISIGGDGTFLRTATYVGNSNIPILGINT 96 (292)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEec
Confidence 46899999999999988777 3789998754
No 195
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=78.46 E-value=10 Score=23.07 Aligned_cols=45 Identities=7% Similarity=0.225 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 113 SITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 113 ~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
...+.+.++.+| ++..+..+....+.+....+.+.++..+..+++
T Consensus 5 ~r~f~~q~~~LL-~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLd 49 (78)
T cd07347 5 AREFSQQVDHLL-TDAEREQVTRALERYHQERNVDDLVRDLYLVLD 49 (78)
T ss_pred HHHHHHHHHHHC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC
Confidence 345677777777 555577777777777777777777777766655
No 196
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.45 E-value=8.5 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHhhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 50 LAYAAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 50 ~~l~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
++...+|++|+-+|.+|++-++. .++|++-+..
T Consensus 60 ~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 60 ELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 33357999999999999887655 4789987754
No 197
>PRK10586 putative oxidoreductase; Provisional
Probab=78.43 E-value=17 Score=28.75 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=41.6
Q ss_pred hHHHHHhhcCCeeEEEEcCcccHH----HHHHHhhcCCCeEEeccc-----ccHHHHH----hhCceEEecCChHHHHHH
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEAFN----EMESLVRNHPRLLLTPFL-----HSMDLAY----AAADLIVSRAGAMTCYEI 70 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~~~----~l~~~~~~~~~v~~~~~~-----~~~~~~l----~~ad~~i~~~G~~t~~Ea 70 (159)
.+.++++.+..-++++++|+..++ .+.+.++. .++.+..|. +++.++. ..+|++|+-+|+ +.+..
T Consensus 24 ~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~~~~~v~~l~~~~~~~~d~iiavGGG-s~iD~ 101 (362)
T PRK10586 24 HLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFEL-PGAKHILFRGHCSESDVAQLAAASGDDRQVVIGVGGG-ALLDT 101 (362)
T ss_pred HHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHH-cCCeEEEeCCCCCHHHHHHHHHHhccCCCEEEEecCc-HHHHH
Confidence 344555555323788888875332 33333332 223333222 1233333 346999986664 33442
Q ss_pred H-----HhCCcEEEecCC
Q 031484 71 L-----ATGKPSILIPSP 83 (159)
Q Consensus 71 l-----~~g~P~I~~p~~ 83 (159)
. ..++|+|++|..
T Consensus 102 aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 102 AKALARRLGLPFVAIPTI 119 (362)
T ss_pred HHHHHhhcCCCEEEEeCC
Confidence 2 247999999975
No 198
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=77.58 E-value=37 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=26.6
Q ss_pred cHHHHHhhCceEEecCChH--------H---HHHHHHhCCcEEEecCC
Q 031484 47 SMDLAYAAADLIVSRAGAM--------T---CYEILATGKPSILIPSP 83 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~--------t---~~Eal~~g~P~I~~p~~ 83 (159)
++.+.+..||++|+-+|+. + ++-+..+|+|+++.+..
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 4566799999999966521 1 23456799999998664
No 199
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=76.90 E-value=26 Score=27.26 Aligned_cols=77 Identities=22% Similarity=0.118 Sum_probs=41.9
Q ss_pred HHHHHhhcCCeeEEEEcCcccH----HHHHHHhhcCCCeEEec-ccc--------cHHHHH--hhCceEEecCChHHHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEAF----NEMESLVRNHPRLLLTP-FLH--------SMDLAY--AAADLIVSRAGAMTCYE 69 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~~----~~l~~~~~~~~~v~~~~-~~~--------~~~~~l--~~ad~~i~~~G~~t~~E 69 (159)
..+.++.+..-++++++|+... +.+++.++.. .+.+++ ..+ +..+.+ ..+|.+|+-+| ++++.
T Consensus 14 l~~~l~~~g~~~~livt~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD 91 (337)
T cd08177 14 LAAELERLGASRALVLTTPSLATKLAERVASALGDR-VAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTID 91 (337)
T ss_pred HHHHHHHcCCCeEEEEcChHHHHHHHHHHHHHhccC-CcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHH
Confidence 3444555543478888887532 2344333322 333332 211 222333 36899998665 34444
Q ss_pred H-----HHhCCcEEEecCC
Q 031484 70 I-----LATGKPSILIPSP 83 (159)
Q Consensus 70 a-----l~~g~P~I~~p~~ 83 (159)
. ...++|+|.+|..
T Consensus 92 ~aK~ia~~~~~p~i~IPTt 110 (337)
T cd08177 92 LAKAIALRTGLPIIAIPTT 110 (337)
T ss_pred HHHHHHHHhcCCEEEEcCC
Confidence 2 2348999999975
No 200
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=76.72 E-value=9.3 Score=26.63 Aligned_cols=57 Identities=7% Similarity=-0.023 Sum_probs=35.3
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcC-CCeEEecccc-cHHHHHhhCceEEe
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNH-PRLLLTPFLH-SMDLAYAAADLIVS 60 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~-~~~~~l~~ad~~i~ 60 (159)
++++-+...+-| .|++++|.+++..|.+.++.. ..|.++|..+ .-..+...||-+|.
T Consensus 96 Dame~~~~~~iD-~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~ 154 (160)
T TIGR00288 96 EAMELIYNPNID-AVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAII 154 (160)
T ss_pred HHHHHhccCCCC-EEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEe
Confidence 344443333333 466788998888887766654 3566666443 23467789998875
No 201
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=76.61 E-value=14 Score=26.33 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=36.3
Q ss_pred hHHHHHhhcCCeeEEEEcCccc-HHHHHHHhhcCCCeEEeccc--ccHHHHHhh--CceEEecCC---hHHHHHHHHhCC
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEA-FNEMESLVRNHPRLLLTPFL--HSMDLAYAA--ADLIVSRAG---AMTCYEILATGK 75 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~-~~~l~~~~~~~~~v~~~~~~--~~~~~~l~~--ad~~i~~~G---~~t~~Eal~~g~ 75 (159)
...++.+++|+.++++.+.... .+...+.+...-.+...++. ..+..++.. -|++|...+ ++-+.++-..|+
T Consensus 40 Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~i 119 (186)
T PF04413_consen 40 LIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGI 119 (186)
T ss_dssp HHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES----HHHHHH-----S
T ss_pred HHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCC
Confidence 4556677789999988877653 44444433221233344332 134555553 377776555 688888999999
Q ss_pred cEEEec
Q 031484 76 PSILIP 81 (159)
Q Consensus 76 P~I~~p 81 (159)
|++++.
T Consensus 120 p~~LvN 125 (186)
T PF04413_consen 120 PVVLVN 125 (186)
T ss_dssp -EEEEE
T ss_pred CEEEEe
Confidence 999983
No 202
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.49 E-value=11 Score=28.67 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=36.1
Q ss_pred hCceEEecCChHHHHHHHH-hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC
Q 031484 54 AADLIVSRAGAMTCYEILA-TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGN 126 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~-~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~ 126 (159)
.+|++|+-+|.+|++-++. +..|++-+... ..|+... .+++++.+.+.++++.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-----------------~lGFL~~---~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-----------------GLGFLTE---IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-----------------CCccCcc---cCHHHHHHHHHHHHcC
Confidence 6899999999999988777 46798877442 1233332 2256777777777654
No 203
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.22 E-value=17 Score=25.44 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=38.1
Q ss_pred CCeeEEEEcCcccH-HH-HHHHhhcCC-CeEEeccc-ccHHHHHhhCceEEecCCh-HHHHHHHHhCCcEEEecCC
Q 031484 13 HNLFIIWQTGVEAF-NE-MESLVRNHP-RLLLTPFL-HSMDLAYAAADLIVSRAGA-MTCYEILATGKPSILIPSP 83 (159)
Q Consensus 13 ~~~~~~~~~G~~~~-~~-l~~~~~~~~-~v~~~~~~-~~~~~~l~~ad~~i~~~G~-~t~~Eal~~g~P~I~~p~~ 83 (159)
.+-+++++ |.+.. .. +.+.+.... ++.+.... +++.+.+..||++|+..|. . ++..-...-..++++..
T Consensus 43 ~gk~vlVi-G~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~-ii~~~~~~~~~viIDla 116 (168)
T cd01080 43 AGKKVVVV-GRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG-LVKGDMVKPGAVVIDVG 116 (168)
T ss_pred CCCEEEEE-CCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc-eecHHHccCCeEEEEcc
Confidence 34456544 54431 22 333333222 56666544 5788999999999986663 3 33333344456666543
No 204
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=76.10 E-value=16 Score=27.28 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=28.1
Q ss_pred CChHHHHHHHH-hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeecc
Q 031484 62 AGAMTCYEILA-TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITE 108 (159)
Q Consensus 62 ~G~~t~~Eal~-~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~ 108 (159)
+|+...-|.+. .|+|.|++... ......+.+++.|.|+++-.
T Consensus 74 PGP~~ARE~l~~~~iP~IvI~D~-----p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 74 PGPKKAREILKAAGIPCIVIGDA-----PGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred CCchHHHHHHHhcCCCEEEEcCC-----CccchHHHHHhcCCcEEEEe
Confidence 46666667554 68999998542 21223367899999988654
No 205
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=75.99 E-value=30 Score=27.40 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=42.8
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEeccc---cc------HHHHH--hhCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTPFL---HS------MDLAY--AAADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~~~---~~------~~~~l--~~ad~~i~~~G~~t~ 67 (159)
+.+.++.+..-++++++|+. ..+++++.++..+ .+.+++-+ |. ..+.+ ..+|++|.-+|+ ++
T Consensus 20 l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGG-Sv 98 (379)
T TIGR02638 20 IVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGG-SP 98 (379)
T ss_pred HHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh-HH
Confidence 34455555434788888874 2345555443222 34444322 11 22333 368999986654 44
Q ss_pred HHHH---H----------------------hCCcEEEecCC
Q 031484 68 YEIL---A----------------------TGKPSILIPSP 83 (159)
Q Consensus 68 ~Eal---~----------------------~g~P~I~~p~~ 83 (159)
+.+. + .++|+|.+|..
T Consensus 99 iD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 99 IDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 5544 1 35799999985
No 206
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.73 E-value=12 Score=28.10 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=24.6
Q ss_pred hhCceEEecCChHHHHHHHH-hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA-TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~-~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++. +++|++-+..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~ 70 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKA 70 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeC
Confidence 47899999999999888765 6899987743
No 207
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=75.64 E-value=22 Score=28.34 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=36.7
Q ss_pred CeEEecccc--cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 38 RLLLTPFLH--SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 38 ~v~~~~~~~--~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+.+++|++ +..+++-.||+-+.++- -|+.=|.-+|+|+|=-.++
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-DSfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFVRGE-DSFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceEecc-hHHHHHHHhCCCceEecCc
Confidence 467889996 68899999999998744 5788999999999964444
No 208
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=75.22 E-value=13 Score=28.50 Aligned_cols=30 Identities=40% Similarity=0.295 Sum_probs=24.5
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|+++++. .++|++-+..
T Consensus 62 ~~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 62 ARADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 36899999999999999876 3789887744
No 209
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.20 E-value=18 Score=22.74 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=39.4
Q ss_pred eeEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc-ccHHHHHhhCceEEecCCh----HHHHHH-HHhCCcEEEecC
Q 031484 15 LFIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL-HSMDLAYAAADLIVSRAGA----MTCYEI-LATGKPSILIPS 82 (159)
Q Consensus 15 ~~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~-~~~~~~l~~ad~~i~~~G~----~t~~Ea-l~~g~P~I~~p~ 82 (159)
.+++++||.+- -..+++.++..+ ++.+.... .++.+....+|+++..+.- ..+-+. --.|+|+.+++.
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 47888999862 244444443322 34444332 3566777889999985541 222222 235789999854
No 210
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=74.58 E-value=7.2 Score=27.02 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHhhCceEEecCC-hHH---HHHHHHhCCcEEEecCC
Q 031484 48 MDLAYAAADLIVSRAG-AMT---CYEILATGKPSILIPSP 83 (159)
Q Consensus 48 ~~~~l~~ad~~i~~~G-~~t---~~Eal~~g~P~I~~p~~ 83 (159)
...+...||.+|.-+| .+| +.|++.+++|+++.+..
T Consensus 85 k~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 85 NFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 4456678999886544 555 45588899999988764
No 211
>PRK09375 quinolinate synthetase; Provisional
Probab=73.50 E-value=6.5 Score=30.57 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 26 FNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 26 ~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.++++++-+.+++..++.|+..-.++=+.||++.+.|....+.+++.-+..+|++|..
T Consensus 109 ~~~i~~lk~~~p~a~vVaYvNssaeVKA~aD~~cTSSnAl~iv~~~~~~~~IlF~PD~ 166 (319)
T PRK09375 109 AEEFRAFKEAHPDATVVTYVNTSAAVKARADIVCTSSNAVKIVEALPQGKKILFLPDQ 166 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHhCCeEEeCHHHHHHHhccCCCCeEEEeCch
Confidence 4555554445678999999987788888999999977888888877678889988764
No 212
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=73.26 E-value=26 Score=27.38 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=40.9
Q ss_pred hHHHHHhhcCCeeEEEEcCcccH----HHHHHHhhcCCCeE--Eeccccc------HHHHH--hhCceEEecCChHHHHH
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEAF----NEMESLVRNHPRLL--LTPFLHS------MDLAY--AAADLIVSRAGAMTCYE 69 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~~----~~l~~~~~~~~~v~--~~~~~~~------~~~~l--~~ad~~i~~~G~~t~~E 69 (159)
...+.++++ .-++++++|+... +.+++.++. .++. +++-.+. ..+.+ ..+|++|+-+|+ +++.
T Consensus 14 ~l~~~~~~~-~~~~liv~d~~~~~~~~~~l~~~L~~-~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGG-s~~D 90 (347)
T cd08172 14 ELGELLKRF-GKRPLIVTGPRSWAAAKPYLPESLAA-GEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGGG-KVLD 90 (347)
T ss_pred HHHHHHHHh-CCeEEEEECHHHHHHHHHHHHHHHhc-CeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-HHHH
Confidence 344455554 3477888887533 333333321 2332 2321232 22333 268999986663 3333
Q ss_pred -----HHHhCCcEEEecCC
Q 031484 70 -----ILATGKPSILIPSP 83 (159)
Q Consensus 70 -----al~~g~P~I~~p~~ 83 (159)
+...++|+|.+|..
T Consensus 91 ~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 91 TAKAVADRLGVPVITVPTL 109 (347)
T ss_pred HHHHHHHHhCCCEEEecCc
Confidence 23358999999975
No 213
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.92 E-value=18 Score=27.37 Aligned_cols=30 Identities=23% Similarity=0.167 Sum_probs=23.7
Q ss_pred hhCceEEecCChHHHHHHHHh-----CCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILAT-----GKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~~-----g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++.. .+|++-+..
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEec
Confidence 458999999999999998874 567776644
No 214
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=72.90 E-value=13 Score=30.83 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=36.0
Q ss_pred hhCceEEecCChHHHHHHHHh----CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC
Q 031484 53 AAADLIVSRAGAMTCYEILAT----GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGN 126 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~~----g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~ 126 (159)
..+|++|+-+|.+|++-++.. ++|++-+... ..|+.... +++.+.+.+.++++.
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-----------------~LGFLt~i---~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-----------------SLGFMTPF---HSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-----------------Ccceeccc---CHHHHHHHHHHHHcC
Confidence 468999999999999988763 5688876432 13433222 256677777777654
No 215
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=72.83 E-value=43 Score=26.58 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEec-cc--c------cHHHHHh--hCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTP-FL--H------SMDLAYA--AADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~-~~--~------~~~~~l~--~ad~~i~~~G~~t~ 67 (159)
+.+.++....-++++++|+. ..+++.+.++..+ .+.+++ .. | +..+.+. .+|++|+=+| +++
T Consensus 21 l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~ 99 (382)
T PRK10624 21 LTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSP 99 (382)
T ss_pred HHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHH
Confidence 33444444434777888874 2445555554322 344443 22 1 1223332 6899998655 344
Q ss_pred HHHH---H----------------------hCCcEEEecCCC
Q 031484 68 YEIL---A----------------------TGKPSILIPSPN 84 (159)
Q Consensus 68 ~Eal---~----------------------~g~P~I~~p~~~ 84 (159)
+.+. + .++|+|.+|..-
T Consensus 100 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 100 QDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 5544 2 248999999863
No 216
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.81 E-value=14 Score=28.28 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=24.6
Q ss_pred HhhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 52 YAAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 52 l~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
-..+|++|+-+|.+|++.++. .++|++-+..
T Consensus 61 ~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~ 95 (292)
T PRK03378 61 GQQADLAIVVGGDGNMLGAARVLARYDIKVIGINR 95 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEEC
Confidence 346899999999999999874 3679887744
No 217
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=72.48 E-value=16 Score=27.31 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=23.5
Q ss_pred hCceEEecCChHHHHHHHHh----CCcEEEecC
Q 031484 54 AADLIVSRAGAMTCYEILAT----GKPSILIPS 82 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~~----g~P~I~~p~ 82 (159)
.+|++|+-+|.+|++.++.. ++|++-+..
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 47999999999999987653 689987754
No 218
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.45 E-value=16 Score=27.70 Aligned_cols=33 Identities=18% Similarity=0.000 Sum_probs=25.3
Q ss_pred HHHhhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 50 LAYAAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 50 ~~l~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
+.-..+|++|+-+|.+|++.++. .++|++-+..
T Consensus 38 ~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 38 EIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 33456899999999999998655 3689997743
No 219
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=72.28 E-value=37 Score=26.90 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=42.3
Q ss_pred HHHHHhhcCCeeEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc---c------cHHHHHh--hCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL---H------SMDLAYA--AADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~---~------~~~~~l~--~ad~~i~~~G~~t~ 67 (159)
+.+.++....-++++++|+.. .+++++.++... .+.+++-+ | +..+.++ .+|++|.=+|+ ++
T Consensus 19 l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-S~ 97 (377)
T cd08176 19 IGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGG-SP 97 (377)
T ss_pred HHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-HH
Confidence 344455544347888888742 345555554322 34444321 1 2223332 68999986654 44
Q ss_pred HHHH---H--------------------hCCcEEEecCC
Q 031484 68 YEIL---A--------------------TGKPSILIPSP 83 (159)
Q Consensus 68 ~Eal---~--------------------~g~P~I~~p~~ 83 (159)
+.+. + .++|+|.+|..
T Consensus 98 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 98 HDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 4422 2 36899999985
No 220
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=72.15 E-value=43 Score=25.83 Aligned_cols=78 Identities=8% Similarity=0.041 Sum_probs=41.5
Q ss_pred HHHHHhhcCCeeEEEEcCccc----HHHHHHHhhcCCCeEEeccc---c------cHHHHHh--hCceEEecCChHHHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA----FNEMESLVRNHPRLLLTPFL---H------SMDLAYA--AADLIVSRAGAMTCYE 69 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~----~~~l~~~~~~~~~v~~~~~~---~------~~~~~l~--~ad~~i~~~G~~t~~E 69 (159)
+.+.++....-++++++|+.. .+.+.+.++..-.+.++... + +..+.+. .+|++|+-+|+ +++.
T Consensus 14 l~~~~~~~g~~~~liv~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG-s~~D 92 (332)
T cd07766 14 IGEEIKRGGFDRALVVSDEGVVKGVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGG-STLD 92 (332)
T ss_pred HHHHHHhcCCCeEEEEeCCchhhhHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCc-hHHH
Confidence 334444443336778888753 23444444321233344322 1 2333343 58999986664 3344
Q ss_pred HH-----Hh--CCcEEEecCC
Q 031484 70 IL-----AT--GKPSILIPSP 83 (159)
Q Consensus 70 al-----~~--g~P~I~~p~~ 83 (159)
+. .+ |+|+|.+|..
T Consensus 93 ~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 93 TAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHhcCCCCEEEEeCC
Confidence 22 23 9999999975
No 221
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=71.92 E-value=6.4 Score=29.63 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=28.4
Q ss_pred cHHHHHhhCceEEecCCh----HHHHHHHHhC-CcEEEec
Q 031484 47 SMDLAYAAADLIVSRAGA----MTCYEILATG-KPSILIP 81 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~----~t~~Eal~~g-~P~I~~p 81 (159)
+..+.|+.|..+++..|. .-++||+.+| +|||+.+
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecC
Confidence 577899999999987773 4589999888 5999864
No 222
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=71.57 E-value=7.8 Score=28.91 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=25.8
Q ss_pred ChHHHHHHH-HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeecc
Q 031484 63 GAMTCYEIL-ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITE 108 (159)
Q Consensus 63 G~~t~~Eal-~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~ 108 (159)
|+...-|.+ +.|+|.|++... ......+.+.+.|.|+++-.
T Consensus 74 GP~~ARE~l~~~~iP~IvI~D~-----p~~k~kd~l~~~g~GYIivk 115 (276)
T PF01993_consen 74 GPTKAREMLSAKGIPCIVISDA-----PTKKAKDALEEEGFGYIIVK 115 (276)
T ss_dssp HHHHHHHHHHHSSS-EEEEEEG-----GGGGGHHHHHHTT-EEEEET
T ss_pred CcHHHHHHHHhCCCCEEEEcCC-----CchhhHHHHHhcCCcEEEEe
Confidence 455566765 589999998442 21123467899999998654
No 223
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=70.10 E-value=49 Score=26.04 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHHhhcCCeeEEEEcCccc-----HHHHHHHhhcC-CCeEEec-cc--c------cHHHHH--hhCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA-----FNEMESLVRNH-PRLLLTP-FL--H------SMDLAY--AAADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~-----~~~l~~~~~~~-~~v~~~~-~~--~------~~~~~l--~~ad~~i~~~G~~t~ 67 (159)
+.+.++....-++++++|+.. .+++.+.++.. -.+.+++ .. + +..+.+ ..+|++|.-+|+ ++
T Consensus 14 l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGG-s~ 92 (370)
T cd08551 14 LGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGG-SV 92 (370)
T ss_pred HHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-hH
Confidence 344455444347778888742 23555544432 1344343 22 1 122333 267999986664 33
Q ss_pred HHHH-----Hh------------------CCcEEEecCC
Q 031484 68 YEIL-----AT------------------GKPSILIPSP 83 (159)
Q Consensus 68 ~Eal-----~~------------------g~P~I~~p~~ 83 (159)
+... .+ ++|+|.+|..
T Consensus 93 ~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 93 LDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred HHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 3321 22 7899999985
No 224
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=69.11 E-value=14 Score=28.76 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=41.6
Q ss_pred cCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 35 NHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 35 ~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+|+..+..|++.-.++=+.||+++|+|...-+.|.+.-+.++|..|..
T Consensus 120 ~~P~~~vV~YvNtsA~vKA~~Di~cTSsNAvkvVe~~~~~~~Iif~PD~ 168 (324)
T COG0379 120 KHPDAPVVTYVNTSAEVKAEADICCTSSNAVKVVESALDGDKILFLPDK 168 (324)
T ss_pred HCCCCceEEEeeChHHHHhhcCeEEecchHHHHHHhccCCCcEEEcCcH
Confidence 3678889999988788889999999988888889988777888888753
No 225
>PRK10342 glycerate kinase I; Provisional
Probab=68.98 E-value=45 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=25.9
Q ss_pred cHHHHHhhCceEEecCC-----------hHHHHH-HHHhCCcEEEec
Q 031484 47 SMDLAYAAADLIVSRAG-----------AMTCYE-ILATGKPSILIP 81 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G-----------~~t~~E-al~~g~P~I~~p 81 (159)
++.+.++.||++||--| +..+.+ +-.+++|+|++-
T Consensus 277 ~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~ 323 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIA 323 (381)
T ss_pred CHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEe
Confidence 58899999999998444 223334 666899999973
No 226
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.89 E-value=20 Score=27.52 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=23.9
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|+++++. .++|++-+..
T Consensus 61 ~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~ 94 (295)
T PRK01231 61 EVCDLVIVVGGDGSLLGAARALARHNVPVLGINR 94 (295)
T ss_pred cCCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 35899999999999998765 3679887753
No 227
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=68.80 E-value=55 Score=25.71 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHHhhcCCeeEEEEcCccc------HHHHHHHhhcCC-CeEEeccc---cc------HHHHH--hhCceEEecCChHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA------FNEMESLVRNHP-RLLLTPFL---HS------MDLAY--AAADLIVSRAGAMT 66 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~~~---~~------~~~~l--~~ad~~i~~~G~~t 66 (159)
+.+.++... -++++++|+.. .+++.+.++... .+.+++.+ |. ..+.+ ..+|++|+=+|+ +
T Consensus 17 l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-S 94 (357)
T cd08181 17 HGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGG-S 94 (357)
T ss_pred HHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-h
Confidence 334455444 47888888742 245555444321 34444322 21 22333 367999986654 4
Q ss_pred HHHHHH----------------------hCCcEEEecCC
Q 031484 67 CYEILA----------------------TGKPSILIPSP 83 (159)
Q Consensus 67 ~~Eal~----------------------~g~P~I~~p~~ 83 (159)
++.+.- .++|+|.+|..
T Consensus 95 viD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 95 PLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 455432 16899999985
No 228
>PLN02727 NAD kinase
Probab=68.55 E-value=18 Score=32.34 Aligned_cols=54 Identities=6% Similarity=0.050 Sum_probs=37.4
Q ss_pred hhCceEEecCChHHHHHHHHh----CCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhcC
Q 031484 53 AAADLIVSRAGAMTCYEILAT----GKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILGN 126 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~~----g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~~ 126 (159)
..+|++|+-+|.+|++-++.. ++|++-+... ..|+.... .++.+.+.|.++++.
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-----------------rLGFLTdi---~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-----------------SLGFLTSH---YFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-----------------CccccccC---CHHHHHHHHHHHHcC
Confidence 468999999999999998764 6798877542 13333322 266777777777754
No 229
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=68.45 E-value=57 Score=25.79 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=41.0
Q ss_pred HHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEecc-cc--------cHHHHH--hhCceEEecCChHHHH
Q 031484 6 YQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTPF-LH--------SMDLAY--AAADLIVSRAGAMTCY 68 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~~-~~--------~~~~~l--~~ad~~i~~~G~~t~~ 68 (159)
.+.++.+..-++++++|+. ..+++.+.++... .+.+++. .+ +..+.+ ..+|++|+=+| ++++
T Consensus 15 ~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~ 93 (375)
T cd08194 15 GAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPI 93 (375)
T ss_pred HHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHH
Confidence 3444433333787888874 2345555444322 3444432 22 122233 36899998655 4445
Q ss_pred HHH---H--------------------hCCcEEEecCC
Q 031484 69 EIL---A--------------------TGKPSILIPSP 83 (159)
Q Consensus 69 Eal---~--------------------~g~P~I~~p~~ 83 (159)
.+. + .++|+|++|..
T Consensus 94 D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 94 DTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 532 2 26899999985
No 230
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=67.67 E-value=17 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=22.7
Q ss_pred ccHHHHHhhCceEEecCCh----HHHHHHHHhCCcEEEecC
Q 031484 46 HSMDLAYAAADLIVSRAGA----MTCYEILATGKPSILIPS 82 (159)
Q Consensus 46 ~~~~~~l~~ad~~i~~~G~----~t~~Eal~~g~P~I~~p~ 82 (159)
+++.+++..+|++|--+.+ ..+-.++.+|+|+|+...
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECC
Confidence 4577888889999843332 234447889999998754
No 231
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=67.46 E-value=60 Score=25.66 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEeccc---c------cHHHHH--hhCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTPFL---H------SMDLAY--AAADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~~~---~------~~~~~l--~~ad~~i~~~G~~t~ 67 (159)
+...++....-++++++|+. ..+++.+.++... .+.+++.+ | +..+.+ ..+|++|+-+|+ ++
T Consensus 17 l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-s~ 95 (376)
T cd08193 17 LGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGG-SS 95 (376)
T ss_pred HHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-hH
Confidence 34445554434777888874 2355555443322 34434322 1 222333 277999986664 33
Q ss_pred HHHH---H--------------------hCCcEEEecCC
Q 031484 68 YEIL---A--------------------TGKPSILIPSP 83 (159)
Q Consensus 68 ~Eal---~--------------------~g~P~I~~p~~ 83 (159)
+.+. + .++|+|.+|..
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 96 MDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 4422 2 26899999975
No 232
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=67.17 E-value=9 Score=26.99 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=24.3
Q ss_pred HHHhhCceEEe-----c--CChHHHHH---HHHhCCcEEEecC
Q 031484 50 LAYAAADLIVS-----R--AGAMTCYE---ILATGKPSILIPS 82 (159)
Q Consensus 50 ~~l~~ad~~i~-----~--~G~~t~~E---al~~g~P~I~~p~ 82 (159)
..+-.||++|. + .-++|..| +.+.|+|++....
T Consensus 64 ~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 64 KLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred HHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEee
Confidence 55779999884 3 11457888 7889999998743
No 233
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=67.16 E-value=43 Score=25.80 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=37.0
Q ss_pred hhcCCeeEEEEcCcccHHH--HHHHhhcCCCeEEecccc-cHHHHHhhCceEEe-------cCC----hHH---HHHHHH
Q 031484 10 MEKHNLFIIWQTGVEAFNE--MESLVRNHPRLLLTPFLH-SMDLAYAAADLIVS-------RAG----AMT---CYEILA 72 (159)
Q Consensus 10 ~~~~~~~~~~~~G~~~~~~--l~~~~~~~~~v~~~~~~~-~~~~~l~~ad~~i~-------~~G----~~t---~~Eal~ 72 (159)
+...+.++++.-+++..+- +.+.+.. .++.++=..+ .+..+|+.+|.++. .+| .|| .+=|-.
T Consensus 137 ~~~~~f~V~v~EsrP~~~G~~~a~~L~~-~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~ 215 (301)
T TIGR00511 137 EQGKDIEVIATETRPRKQGHITAKELRD-YGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAARE 215 (301)
T ss_pred HcCCcEEEEEecCCCcchHHHHHHHHHH-CCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHH
Confidence 3445677776666654321 2222222 2343332222 46677888988873 222 223 223556
Q ss_pred hCCcEEEe
Q 031484 73 TGKPSILI 80 (159)
Q Consensus 73 ~g~P~I~~ 80 (159)
+++|++++
T Consensus 216 ~~vPv~V~ 223 (301)
T TIGR00511 216 ARVPFMVA 223 (301)
T ss_pred hCCCEEEE
Confidence 89999986
No 234
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=67.05 E-value=57 Score=25.74 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=40.5
Q ss_pred HHHhhcCCe-eEEEEcCcccHHHHHHHhh--cCCCeEEec--cc--ccHHHHHhhCceEEecCCh---HHHHH-HHHhCC
Q 031484 7 QMLMEKHNL-FIIWQTGVEAFNEMESLVR--NHPRLLLTP--FL--HSMDLAYAAADLIVSRAGA---MTCYE-ILATGK 75 (159)
Q Consensus 7 ~~~~~~~~~-~~~~~~G~~~~~~l~~~~~--~~~~v~~~~--~~--~~~~~~l~~ad~~i~~~G~---~t~~E-al~~g~ 75 (159)
+.|.++++. +++ +.|+. .+++++... ...++.... .. .++.++++.+|++|+.+|+ ..+++ ++..|+
T Consensus 15 ~~L~~~~~~~~v~-va~r~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~ 92 (386)
T PF03435_consen 15 RLLARRGPFEEVT-VADRN-PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIEAGV 92 (386)
T ss_dssp HHHHCTTCE-EEE-EEESS-HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-
T ss_pred HHHhcCCCCCcEE-EEECC-HHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC
Confidence 445555555 553 44554 344444332 234554443 22 2488999999999987773 33444 777899
Q ss_pred cEEE
Q 031484 76 PSIL 79 (159)
Q Consensus 76 P~I~ 79 (159)
+.+=
T Consensus 93 ~yvD 96 (386)
T PF03435_consen 93 HYVD 96 (386)
T ss_dssp EEEE
T ss_pred Ceec
Confidence 9886
No 235
>PRK09932 glycerate kinase II; Provisional
Probab=66.97 E-value=54 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=25.5
Q ss_pred cHHHHHhhCceEEecCC-----------hHHHHH-HHHhCCcEEEec
Q 031484 47 SMDLAYAAADLIVSRAG-----------AMTCYE-ILATGKPSILIP 81 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G-----------~~t~~E-al~~g~P~I~~p 81 (159)
++.+.++.||++|+-.| +..+.. +-.+++|+|++-
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~ 323 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIA 323 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEe
Confidence 58899999999998444 222333 566899999973
No 236
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=66.68 E-value=59 Score=25.39 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=40.3
Q ss_pred HHHHHhhcCCeeEEEEcCccc----HHHHHHHhhcCC-CeEEe-cccc-----cHHH---HH--hhCceEEecCChHHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA----FNEMESLVRNHP-RLLLT-PFLH-----SMDL---AY--AAADLIVSRAGAMTCY 68 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~----~~~l~~~~~~~~-~v~~~-~~~~-----~~~~---~l--~~ad~~i~~~G~~t~~ 68 (159)
+.+.++.+. -++++++|+.. .+.+.+.++... .+.++ .+.+ .+.+ .. ..+|++|+-+|+ +++
T Consensus 14 l~~~~~~~~-~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGG-s~~ 91 (345)
T cd08171 14 IPEVCEKYG-KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGG-KAI 91 (345)
T ss_pred HHHHHHhcC-CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc-HHH
Confidence 334444433 47778888742 234444343221 22222 2221 2222 22 367899986654 444
Q ss_pred HH-----HHhCCcEEEecCC
Q 031484 69 EI-----LATGKPSILIPSP 83 (159)
Q Consensus 69 Ea-----l~~g~P~I~~p~~ 83 (159)
.+ ...++|+|.+|..
T Consensus 92 D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 92 DTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred HHHHHHHHHcCCCEEEecCc
Confidence 52 3348999999875
No 237
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.59 E-value=20 Score=27.32 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=23.6
Q ss_pred hCceEEecCChHHHHHHHH---hCCcEEEecC
Q 031484 54 AADLIVSRAGAMTCYEILA---TGKPSILIPS 82 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~---~g~P~I~~p~ 82 (159)
.+|++|+-+|.+|+++++. .++|++.++.
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 6899999999999998774 3568888865
No 238
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=66.12 E-value=60 Score=25.14 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=37.9
Q ss_pred eeEEEEcCcccHHHHHHHhhcCC--CeEEeccc--c---cHHHHHh---hCceEEecCChHHHHHHH-----HhCCcEEE
Q 031484 15 LFIIWQTGVEAFNEMESLVRNHP--RLLLTPFL--H---SMDLAYA---AADLIVSRAGAMTCYEIL-----ATGKPSIL 79 (159)
Q Consensus 15 ~~~~~~~G~~~~~~l~~~~~~~~--~v~~~~~~--~---~~~~~l~---~ad~~i~~~G~~t~~Eal-----~~g~P~I~ 79 (159)
-++++++|+.-.+.+.+.+.... .+..+.+. + ++.+.+. .+|++|+-+|+ ++.... ..|+|+|.
T Consensus 26 ~r~livtd~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGGG-sv~D~aK~vA~~~~~p~i~ 104 (331)
T cd08174 26 GRVAVVSGPGVGEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGGG-KVIDVAKYAAFLRGIPLSV 104 (331)
T ss_pred CceEEEECCcHHHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCCc-HHHHHHHHHHhhcCCCEEE
Confidence 36778888764444544443211 22232221 2 2334443 47999986653 334432 45999999
Q ss_pred ecCC
Q 031484 80 IPSP 83 (159)
Q Consensus 80 ~p~~ 83 (159)
+|..
T Consensus 105 vPTt 108 (331)
T cd08174 105 PTTN 108 (331)
T ss_pred ecCc
Confidence 9875
No 239
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=65.38 E-value=51 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCh-HHHHHHHHhCCcEEEecCCCCCCch-HHHHHHHHHHcCceeee
Q 031484 62 AGA-MTCYEILATGKPSILIPSPNVAEGH-QFKNASLMAKLADSRII 106 (159)
Q Consensus 62 ~G~-~t~~Eal~~g~P~I~~p~~~~~~~~-q~~~~~~~~~~~~g~~~ 106 (159)
+|+ .|.-.|+.+|+|+.++|..- .+. ..++- .+.+.|...+.
T Consensus 168 sGtl~ta~~A~~~gr~v~~~pg~~--~~~~~~G~~-~Li~~GA~~i~ 211 (220)
T TIGR00732 168 SGALITARYALEQGREVFAYPGDL--NSPESDGCH-KLIEQGAALIT 211 (220)
T ss_pred CchHHHHHHHHHhCCcEEEEcCCC--CCccchHHH-HHHHCCCEEEC
Confidence 454 56667889999999997642 222 22333 45566765443
No 240
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=65.17 E-value=34 Score=25.65 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=41.8
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHH----HHHHHhhcCCCeEEe--cc---cc---cHHHHH-----hhCceEEecCCh
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFN----EMESLVRNHPRLLLT--PF---LH---SMDLAY-----AAADLIVSRAGA 64 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~----~l~~~~~~~~~v~~~--~~---~~---~~~~~l-----~~ad~~i~~~G~ 64 (159)
++.+..++++..--++++++|++.++ ++++.++. .++.+. .. .+ +..++. ..+|++|+-+|
T Consensus 7 ~~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg- 84 (250)
T PF13685_consen 7 LDKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKS-AGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG- 84 (250)
T ss_dssp GGGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHT-TT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHH-cCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-
Confidence 45667777776444788889987543 44444433 233322 10 11 233333 25678888555
Q ss_pred HHH-----HHHHHhCCcEEEecCC
Q 031484 65 MTC-----YEILATGKPSILIPSP 83 (159)
Q Consensus 65 ~t~-----~Eal~~g~P~I~~p~~ 83 (159)
+|+ +-|...|+|++.+|..
T Consensus 85 G~i~D~~K~~A~~~~~p~isVPTa 108 (250)
T PF13685_consen 85 GTIIDIAKYAAFELGIPFISVPTA 108 (250)
T ss_dssp HHHHHHHHHHHHHHT--EEEEES-
T ss_pred cHHHHHHHHHHHhcCCCEEEeccc
Confidence 444 3466789999999885
No 241
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=65.02 E-value=60 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=25.6
Q ss_pred cHHHHHhhCceEEecCC-----------hHHHHH-HHHhCCcEEEec
Q 031484 47 SMDLAYAAADLIVSRAG-----------AMTCYE-ILATGKPSILIP 81 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G-----------~~t~~E-al~~g~P~I~~p 81 (159)
++.+.++.||++|+-.| +..+.+ +-.+++|+|++-
T Consensus 276 ~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~ 322 (375)
T TIGR00045 276 DLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIA 322 (375)
T ss_pred CHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEe
Confidence 58899999999998443 223444 556889999873
No 242
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=64.95 E-value=36 Score=25.63 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=34.8
Q ss_pred cCCeeEEEEcCcccHHH--HHHHhhcCCCeEEeccc-ccHHHHHhh-CceEEe-------------cCChHH-HHHHHHh
Q 031484 12 KHNLFIIWQTGVEAFNE--MESLVRNHPRLLLTPFL-HSMDLAYAA-ADLIVS-------------RAGAMT-CYEILAT 73 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~--l~~~~~~~~~v~~~~~~-~~~~~~l~~-ad~~i~-------------~~G~~t-~~Eal~~ 73 (159)
..++++++.-+++..+. +.+.+.. .++.+.-.. ..+..+|+. +|.++. +.|+-. .+=|-.+
T Consensus 131 ~~~~~V~v~es~P~~eG~~~a~~L~~-~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~ 209 (282)
T PF01008_consen 131 GKKFRVIVLESRPYNEGRLMAKELAE-AGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEF 209 (282)
T ss_dssp TEEEEEEEE--TTTTHHHTHHHHHHH-TT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHT
T ss_pred CCeEEEEEccCCcchhhhhHHHHhhh-cceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhh
Confidence 45677777766654322 2222222 344433223 257888999 888763 224322 2334558
Q ss_pred CCcEEEe
Q 031484 74 GKPSILI 80 (159)
Q Consensus 74 g~P~I~~ 80 (159)
++|++++
T Consensus 210 ~vPv~v~ 216 (282)
T PF01008_consen 210 NVPVYVL 216 (282)
T ss_dssp T-EEEEE
T ss_pred CCCEEEE
Confidence 9999997
No 243
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=64.63 E-value=39 Score=28.12 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=44.3
Q ss_pred HHHHHhhcCCeeEEE------EcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 5 YYQMLMEKHNLFIIW------QTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~------~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
+.....++|...+-+ .||+.. ..|.+ +...++++++.--=+-..+++..|=|-|....+ -.||+.||+|++
T Consensus 172 ~~~ai~enp~a~i~~kthpdvl~gkkq-g~lt~-~~~~~r~~ll~edfnpisll~~~dkvy~~ts~m-gfeall~~~~~~ 248 (671)
T COG3563 172 FQTAINENPQADIWVKTHPDVLCGKKQ-GYLTQ-LSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQM-GFEALLCGKPLT 248 (671)
T ss_pred HHHHHhcCCcccEEEEeCCchhcCccc-chhhh-hccCceEEEecccCChHHHHHhcceeEEeeccc-cHHHHhcCCcee
Confidence 344455566665543 455432 11211 223456776643324568899999876533222 379999999999
Q ss_pred EecCC
Q 031484 79 LIPSP 83 (159)
Q Consensus 79 ~~p~~ 83 (159)
..-.+
T Consensus 249 ~fg~p 253 (671)
T COG3563 249 TFGLP 253 (671)
T ss_pred eecch
Confidence 86443
No 244
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=64.61 E-value=59 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=20.7
Q ss_pred hCceEEecCChHHHHHH-----HHhCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEI-----LATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Ea-----l~~g~P~I~~p~~ 83 (159)
.+|++|+-+|+ ++..+ ...|+|+|.+|..
T Consensus 80 ~~d~IIaiGGG-sv~D~aK~iA~~~gip~I~VPTT 113 (332)
T cd08549 80 DTEFLLGIGSG-TIIDLVKFVSFKVGKPFISVPTA 113 (332)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCCEEEeCCC
Confidence 68999986664 33342 3458999999975
No 245
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=64.07 E-value=67 Score=25.11 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=40.8
Q ss_pred hHHHHHhhcCCeeEEEEcCccc----HHHHHHHhhcCC-CeEEeccc--c---c---HHHHH--hhCceEEecCChHHHH
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEA----FNEMESLVRNHP-RLLLTPFL--H---S---MDLAY--AAADLIVSRAGAMTCY 68 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~----~~~l~~~~~~~~-~v~~~~~~--~---~---~~~~l--~~ad~~i~~~G~~t~~ 68 (159)
.+.+.++.+. -++++++|+.. .+++.+.++... .+.+..|. + . ..+.+ ..+|++|+-+|+ +++
T Consensus 13 ~l~~~~~~~g-~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG-s~~ 90 (349)
T cd08550 13 EIAAILSTFG-SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGG-KTL 90 (349)
T ss_pred HHHHHHHHcC-CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCc-HHH
Confidence 3445555544 46777888642 234444343221 12222222 1 2 22333 368999986664 434
Q ss_pred H---H--HHhCCcEEEecCC
Q 031484 69 E---I--LATGKPSILIPSP 83 (159)
Q Consensus 69 E---a--l~~g~P~I~~p~~ 83 (159)
. + ...++|+|++|..
T Consensus 91 D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 91 DTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred HHHHHHHHHcCCCEEEeCCc
Confidence 4 2 2349999999985
No 246
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=64.01 E-value=18 Score=22.88 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=33.6
Q ss_pred CeeEEEEcCccc-HHHHHHHhhcCCCeEEeccc------------ccHHHHHhhCceEEecCChHH----HH-HHHHhCC
Q 031484 14 NLFIIWQTGVEA-FNEMESLVRNHPRLLLTPFL------------HSMDLAYAAADLIVSRAGAMT----CY-EILATGK 75 (159)
Q Consensus 14 ~~~~~~~~G~~~-~~~l~~~~~~~~~v~~~~~~------------~~~~~~l~~ad~~i~~~G~~t----~~-Eal~~g~ 75 (159)
+-++++++|+.- ..+++.+++...+++++.-. ..+.+.+..+++++...+... +. ++-..|+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i 86 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIYADARARGI 86 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHHHHhhCCE
Confidence 345655555432 44555544433456555433 123455677777776555221 22 2333677
Q ss_pred cEEEecCC
Q 031484 76 PSILIPSP 83 (159)
Q Consensus 76 P~I~~p~~ 83 (159)
|+-++..+
T Consensus 87 ~vn~~D~p 94 (103)
T PF13241_consen 87 LVNVVDDP 94 (103)
T ss_dssp EEEETT-C
T ss_pred EEEECCCc
Confidence 77766543
No 247
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=64.00 E-value=45 Score=22.96 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=40.2
Q ss_pred hHHHHHhhcCCeeE-EEEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC---ceEEecCC------hHHHH
Q 031484 4 LYYQMLMEKHNLFI-IWQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA---DLIVSRAG------AMTCY 68 (159)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a---d~~i~~~G------~~t~~ 68 (159)
.+.+.|+.. +++. +-+.|.....-+.. +...+++.+.....+ |.+-+..+ -++++.+| .+.+.
T Consensus 2 ~l~~~L~~~-Gi~~vFg~pG~~~~~l~~a-l~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 2 YLLERLKQL-GVKHVFGVPGDYNLPLLDA-IEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred HHHHHHHHc-CCCEEEEeCCccHHHHHHH-HhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHH
Confidence 455566553 3333 23445443222222 222346766655543 44444333 33455555 23478
Q ss_pred HHHHhCCcEEEec
Q 031484 69 EILATGKPSILIP 81 (159)
Q Consensus 69 Eal~~g~P~I~~p 81 (159)
||..-++|+|++.
T Consensus 80 ~A~~~~~Pvl~i~ 92 (162)
T cd07038 80 GAYAEHVPVVHIV 92 (162)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999984
No 248
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=62.83 E-value=32 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHHhcCHHHH
Q 031484 112 DSITLETTIEEILGNEALM 130 (159)
Q Consensus 112 ~~~~l~~~l~~ll~~~~~~ 130 (159)
+.+.+...+..+++.|+..
T Consensus 36 ~VE~LV~~Ll~iLd~p~Kl 54 (78)
T cd07358 36 GVEDLVRPLLAILDRPEKL 54 (78)
T ss_pred CHHHHHHHHHHHHccHHHH
Confidence 4566666666666665543
No 249
>PRK09375 quinolinate synthetase; Provisional
Probab=62.54 E-value=73 Score=24.90 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=49.3
Q ss_pred HHHHHhhcCCeeEEEEcCc-c-----cHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEE
Q 031484 5 YYQMLMEKHNLFIIWQTGV-E-----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSI 78 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~-~-----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I 78 (159)
+.+-....|+-++++--|. . ..+.++++-+.+|+..+.-|...-.++...||++.|.+|.....+.. -+..+|
T Consensus 168 Lg~~v~~l~~k~vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~HPEc~~eV~a~AD~vgSTs~~i~~v~~~-~~~~~i 246 (319)
T PRK09375 168 LGRYVAKQTGADIILWPGHCIVHEEFTAEDLERLRAEYPDAKVLVHPECPPEVVALADFVGSTSQIIKAAKAS-PAKKFI 246 (319)
T ss_pred HHHHHHHcCCCEEEccCCcchhccCcCHHHHHHHHHHCcCCeEEEecCCCHHHHHhcCEEecHHHHHHHHHhC-CCCeEE
Confidence 3333344456565443343 1 23455554344688888888776788999999999988866655554 367788
Q ss_pred EecC
Q 031484 79 LIPS 82 (159)
Q Consensus 79 ~~p~ 82 (159)
+.|.
T Consensus 247 igTE 250 (319)
T PRK09375 247 VGTE 250 (319)
T ss_pred EEcc
Confidence 8764
No 250
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=62.45 E-value=77 Score=25.12 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEec-ccc--c---H---HHHH--hhCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTP-FLH--S---M---DLAY--AAADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~-~~~--~---~---~~~l--~~ad~~i~~~G~~t~ 67 (159)
+.+.++....-++++++|+. ..+++++.++... .+.+++ ..+ . + .+.+ ..+|++|.=+|+ ++
T Consensus 19 l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG-sv 97 (377)
T cd08188 19 AGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGG-SP 97 (377)
T ss_pred HHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-hH
Confidence 33445554434777888863 2355555544322 333332 221 1 2 2233 368999986663 44
Q ss_pred HHHH---Hh--------------------CCcEEEecCC
Q 031484 68 YEIL---AT--------------------GKPSILIPSP 83 (159)
Q Consensus 68 ~Eal---~~--------------------g~P~I~~p~~ 83 (159)
+.+. +. .+|+|.+|..
T Consensus 98 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 98 IDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 4533 22 4699999985
No 251
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=62.29 E-value=73 Score=24.84 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=20.6
Q ss_pred hCceEEecCChHHHHH-----HHHhCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYE-----ILATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~E-----al~~g~P~I~~p~~ 83 (159)
.+|++|+=+|+ +++. +...++|+|.+|..
T Consensus 80 ~~d~IIaIGGG-s~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGSG-TINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECCc-HHHHHHHHHHHhcCCCEEEecCc
Confidence 68999986664 3334 23358999999975
No 252
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.01 E-value=28 Score=29.33 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=24.5
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|++.++. .++|++-+..
T Consensus 347 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~ 380 (569)
T PRK14076 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINM 380 (569)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 36899999999999998876 3789998754
No 253
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=61.91 E-value=3.4 Score=29.01 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred hhCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 53 AAADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
..+|++||++|+...+.... ++|+|-++..
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 57999999888666666555 9999998765
No 254
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=61.87 E-value=96 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=23.7
Q ss_pred hCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+|++|+.+|+..++.. ...+|||-++..
T Consensus 54 ~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 82 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKS-RLSLPVIVIKPT 82 (526)
T ss_pred CCcEEEECchHHHHHHH-hCCCCEEEecCC
Confidence 68999999887776665 568999999775
No 255
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=61.80 E-value=79 Score=25.07 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=40.9
Q ss_pred HHHHHhhcCCeeEEEEcCccc------HHHHHHHhhcCC-CeEEec-ccc-----cHH---HHH--hhCceEEecCChHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA------FNEMESLVRNHP-RLLLTP-FLH-----SMD---LAY--AAADLIVSRAGAMT 66 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~-~~~-----~~~---~~l--~~ad~~i~~~G~~t 66 (159)
+.+.++.+ .-++++++|+.. .+.+++.++... .+.+++ ..+ .+. +.+ ..+|++|+-+|+ +
T Consensus 20 l~~~~~~~-~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-S 97 (382)
T cd08187 20 LGKELKKY-GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGG-S 97 (382)
T ss_pred HHHHHHHh-CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCh-H
Confidence 34445554 347878888631 345555554322 333332 221 122 233 358999986663 3
Q ss_pred HHHHH---Hh--------------------CCcEEEecCC
Q 031484 67 CYEIL---AT--------------------GKPSILIPSP 83 (159)
Q Consensus 67 ~~Eal---~~--------------------g~P~I~~p~~ 83 (159)
++.+. +. ++|+|.+|..
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 34422 22 6899999975
No 256
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=61.13 E-value=31 Score=22.33 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHHhhcCCeeEEEEcCccc-H-HHHHHHhhc---CCCeEEecccccHHHHHhhCceEEecCChHHHH----HHHHhCC
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA-F-NEMESLVRN---HPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCY----EILATGK 75 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~-~-~~l~~~~~~---~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~----Eal~~g~ 75 (159)
+.++|..+|++.++.+++... . ..+...... ..++.+..+ +. +.+..+|++++..+..... .++..|.
T Consensus 15 l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Dvvf~a~~~~~~~~~~~~~~~~g~ 91 (121)
T PF01118_consen 15 LLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDA--DP-EELSDVDVVFLALPHGASKELAPKLLKAGI 91 (121)
T ss_dssp HHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEET--SG-HHHTTESEEEE-SCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeec--ch-hHhhcCCEEEecCchhHHHHHHHHHhhCCc
Confidence 456677799999888777653 1 122222221 123444442 23 3349999999765543222 2446677
Q ss_pred cEE
Q 031484 76 PSI 78 (159)
Q Consensus 76 P~I 78 (159)
++|
T Consensus 92 ~Vi 94 (121)
T PF01118_consen 92 KVI 94 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 257
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=61.06 E-value=85 Score=25.15 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=40.4
Q ss_pred HHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEec-ccc-----cHHHHH-----hhCceEEecCChHHHH
Q 031484 6 YQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTP-FLH-----SMDLAY-----AAADLIVSRAGAMTCY 68 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~-~~~-----~~~~~l-----~~ad~~i~~~G~~t~~ 68 (159)
.+.++.+..-++++++|+. ..+++.+.++... .+.+++ ..+ .+.+.. ..+|++|+=+|+ +.+
T Consensus 41 ~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGG-S~i 119 (395)
T PRK15454 41 GQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGG-SVL 119 (395)
T ss_pred HHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCCh-HHH
Confidence 3444444333566677753 2455555554322 334443 221 233333 478999996664 334
Q ss_pred HHH---Hh--------------------CCcEEEecCC
Q 031484 69 EIL---AT--------------------GKPSILIPSP 83 (159)
Q Consensus 69 Eal---~~--------------------g~P~I~~p~~ 83 (159)
.+. +. .+|+|.+|..
T Consensus 120 D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 120 DAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred HHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 432 11 4699999975
No 258
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=60.45 E-value=78 Score=24.54 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=37.7
Q ss_pred CCeeEEEEcCcccHH--HHHHHhhcCCCeEEecccc-cHHHHHhhCceEEe-------------cCChHHHHH-HHHhCC
Q 031484 13 HNLFIIWQTGVEAFN--EMESLVRNHPRLLLTPFLH-SMDLAYAAADLIVS-------------RAGAMTCYE-ILATGK 75 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~--~l~~~~~~~~~v~~~~~~~-~~~~~l~~ad~~i~-------------~~G~~t~~E-al~~g~ 75 (159)
.++++++.-+++..+ .+.+.+++. ++.++--++ .+..+|+.+|.++. +.|+..+.. |-..|+
T Consensus 144 k~~~V~VtESRP~~eG~~~ak~L~~~-gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~ 222 (301)
T COG1184 144 KRFKVIVTESRPRGEGRIMAKELRQS-GIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRV 222 (301)
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHc-CCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCC
Confidence 345777666665322 222223332 243333333 57788888888762 345544444 445899
Q ss_pred cEEEe
Q 031484 76 PSILI 80 (159)
Q Consensus 76 P~I~~ 80 (159)
|++++
T Consensus 223 Pf~v~ 227 (301)
T COG1184 223 PFYVV 227 (301)
T ss_pred CEEEE
Confidence 99987
No 259
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=59.63 E-value=16 Score=28.90 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=30.3
Q ss_pred CeEEecccccHHHHHhhCceEEecCC-----------hHHHHHHHH-hCCcEEEec
Q 031484 38 RLLLTPFLHSMDLAYAAADLIVSRAG-----------AMTCYEILA-TGKPSILIP 81 (159)
Q Consensus 38 ~v~~~~~~~~~~~~l~~ad~~i~~~G-----------~~t~~Eal~-~g~P~I~~p 81 (159)
.+.+.--.-++.+.++.||++|+--| +..+.+..- +++|+|.+-
T Consensus 268 Gi~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaia 323 (378)
T COG1929 268 GIEIVLEATNLEDAVKDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIA 323 (378)
T ss_pred cHHHHHHHhCHHHhhccCCEEEeCCCcccccccCCccchHHHHhhhhhCCCEEEEe
Confidence 34333333368899999999997433 345667665 999999873
No 260
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=59.17 E-value=71 Score=24.71 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=35.4
Q ss_pred hcCCeeEEEEcCcccHHH--HHHHhhcCCCeEEecccc-cHHHHHhhCceEEe-------cCC----hHHH---HHHHHh
Q 031484 11 EKHNLFIIWQTGVEAFNE--MESLVRNHPRLLLTPFLH-SMDLAYAAADLIVS-------RAG----AMTC---YEILAT 73 (159)
Q Consensus 11 ~~~~~~~~~~~G~~~~~~--l~~~~~~~~~v~~~~~~~-~~~~~l~~ad~~i~-------~~G----~~t~---~Eal~~ 73 (159)
...++++++.-+++..+- +.+.+.. .++.++=..+ .+..+|+.+|.++. .+| .||. +=|-.+
T Consensus 143 ~~k~~~V~v~EsrP~~~G~~~a~~L~~-~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~ 221 (310)
T PRK08535 143 QGKDIEVIATETRPRNQGHITAKELAE-YGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEA 221 (310)
T ss_pred CCCeEEEEEecCCchhhHHHHHHHHHH-CCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHh
Confidence 335667766655543321 1122222 2333332222 46677888888873 222 2232 224558
Q ss_pred CCcEEEe
Q 031484 74 GKPSILI 80 (159)
Q Consensus 74 g~P~I~~ 80 (159)
++|++++
T Consensus 222 ~vPv~V~ 228 (310)
T PRK08535 222 RVPFMVA 228 (310)
T ss_pred CCCEEEe
Confidence 9999986
No 261
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=59.14 E-value=19 Score=27.06 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=26.0
Q ss_pred ccccHHHHH---hhCceEEec-CCh--H---HHHHHHHhCCcEEEecCC
Q 031484 44 FLHSMDLAY---AAADLIVSR-AGA--M---TCYEILATGKPSILIPSP 83 (159)
Q Consensus 44 ~~~~~~~~l---~~ad~~i~~-~G~--~---t~~Eal~~g~P~I~~p~~ 83 (159)
|..+++..| ..+|++||+ ||+ + -+.-|...|+|+|++..+
T Consensus 183 fs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 183 FSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred cChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 444455444 489999984 331 2 244588899999998554
No 262
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=58.92 E-value=66 Score=23.20 Aligned_cols=105 Identities=8% Similarity=-0.013 Sum_probs=51.4
Q ss_pred hHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc-CCCeEEecccc-cHHHHHhhCceEEecCChHHHHHHH---HhCCcEE
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN-HPRLLLTPFLH-SMDLAYAAADLIVSRAGAMTCYEIL---ATGKPSI 78 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~-~~~v~~~~~~~-~~~~~l~~ad~~i~~~G~~t~~Eal---~~g~P~I 78 (159)
.+..++...+++.+++.+- .+.+++.+.+.. .+.+.++++.+ .|+. ..|.. +.+.+ ....|+|
T Consensus 5 gi~~lL~~~~~~~~~v~~~-~~~~~~l~~~~~~~pd~vl~dl~d~~mp~----------~~Gl~-~~~~l~~~~p~~~iI 72 (207)
T PRK11475 5 GIESLFRKFPGNPYKLHTF-SSQSSFQDAMSRISFSAVIFSLSAMRSER----------REGLS-CLTELAIKFPRMRRL 72 (207)
T ss_pred HHHHHHhcCCCCeeEEEEe-CCHHHHHHHhccCCCCEEEeeccccCCCC----------CCHHH-HHHHHHHHCCCCCEE
Confidence 4556666666666643222 222232222322 34666655542 2211 12433 33433 2367888
Q ss_pred EecCCCCCCchHHHHHHHHHHcCc-eeeeccCCCChhHHHHHHHHHhcC
Q 031484 79 LIPSPNVAEGHQFKNASLMAKLAD-SRIITEDELDSITLETTIEEILGN 126 (159)
Q Consensus 79 ~~p~~~~~~~~q~~~~~~~~~~~~-g~~~~~~~~~~~~l~~~l~~ll~~ 126 (159)
+.... +.+ ......+.+.|. |++.+..+ ++.+.+++...++-
T Consensus 73 vlt~~---~~~-~~~~~~~~~~Ga~gyl~K~~~--~~eL~~aI~~v~~G 115 (207)
T PRK11475 73 VIADD---DIE-ARLIGSLSPSPLDGVLSKAST--LEILQQELFLSLNG 115 (207)
T ss_pred EEeCC---CCH-HHHHHHHHHcCCeEEEecCCC--HHHHHHHHHHHHCC
Confidence 76431 122 212233434554 77665544 88999999888763
No 263
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=58.44 E-value=92 Score=24.75 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=40.1
Q ss_pred HHHHHhhcCCeeEEEEcCccc-----HHHHHHHhhcCC-CeEEecccc------cH---HHHH--hhCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFLH------SM---DLAY--AAADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~~------~~---~~~l--~~ad~~i~~~G~~t~ 67 (159)
+.+.++.+. -++++++|+.. .+++.+.++... .+.+++-+. ++ .+.+ ..+|++|+=+|+ ++
T Consensus 14 l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGG-S~ 91 (386)
T cd08191 14 LPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGG-SC 91 (386)
T ss_pred HHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-hH
Confidence 344555544 36777888642 344444443221 233333221 11 1222 368999986663 33
Q ss_pred HHH---HHh--------------------CCcEEEecCC
Q 031484 68 YEI---LAT--------------------GKPSILIPSP 83 (159)
Q Consensus 68 ~Ea---l~~--------------------g~P~I~~p~~ 83 (159)
+.+ ++. ++|+|.+|..
T Consensus 92 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 92 IDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 342 221 7899999975
No 264
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=57.62 E-value=33 Score=22.58 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=25.4
Q ss_pred eeEEEEcCcccHHHHHHHhhcC-CCeEEecccc-cHHHHHhhCceEEe
Q 031484 15 LFIIWQTGVEAFNEMESLVRNH-PRLLLTPFLH-SMDLAYAAADLIVS 60 (159)
Q Consensus 15 ~~~~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~-~~~~~l~~ad~~i~ 60 (159)
-.+++++|..++..+.+.++.. .+|.+.+..+ --..+...||-++.
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFIS 144 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence 5788899988765554444432 3567777432 23566788887764
No 265
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=57.22 E-value=91 Score=24.32 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=40.7
Q ss_pred HHHHHhhcCCeeEEEEcCccc----HHHHHHHhhcCC-CeEEeccc--c---cHHH---HH--hhCceEEecCChHHHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA----FNEMESLVRNHP-RLLLTPFL--H---SMDL---AY--AAADLIVSRAGAMTCYE 69 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~----~~~l~~~~~~~~-~v~~~~~~--~---~~~~---~l--~~ad~~i~~~G~~t~~E 69 (159)
+.+.++.+. -++++++|+.. .+++.+.++... .+.+..+. + .+.+ .+ ..+|++|+-+|+ +++.
T Consensus 14 l~~~~~~~~-~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-S~iD 91 (351)
T cd08170 14 LGEYLARLG-KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGG-KTLD 91 (351)
T ss_pred HHHHHHHhC-CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCc-hhhH
Confidence 344555553 47778888743 233333333221 22233222 1 2222 33 377999997664 3344
Q ss_pred H-----HHhCCcEEEecCC
Q 031484 70 I-----LATGKPSILIPSP 83 (159)
Q Consensus 70 a-----l~~g~P~I~~p~~ 83 (159)
+ ...++|+|.+|..
T Consensus 92 ~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 92 TAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred HHHHHHHHcCCCEEEeCCc
Confidence 2 3358999999975
No 266
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=57.11 E-value=36 Score=19.67 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=33.8
Q ss_pred eEEEEcCccc------HHHHHHHhhcCCCeEEecccccHH--HHHhhCceEEecCChHHHHHHHHhCCcEEEec
Q 031484 16 FIIWQTGVEA------FNEMESLVRNHPRLLLTPFLHSMD--LAYAAADLIVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 16 ~~~~~~G~~~------~~~l~~~~~~~~~v~~~~~~~~~~--~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
+++++||.+. ...+++.+....-.......+ +. ......|++++.... +....++|++.+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~dliitt~~~----~~~~~~~p~~~i~ 69 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQG-LSEVIDLADADLIISTVPL----AARFLGKPVIVVS 69 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcc-cchhhhcCCccEEEECCcc----ccccCCCcEEEEc
Confidence 3567777651 345555554322222323222 22 456889999986542 1346688999763
No 267
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=56.59 E-value=43 Score=23.70 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceee
Q 031484 69 EILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 69 Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~ 105 (159)
.++..++|+++.|...+...-...|...+.+.|.-++
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii 143 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIIL 143 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEE
Confidence 5788999999998754322223457777887777654
No 268
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=55.94 E-value=98 Score=24.27 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.0
Q ss_pred CceEEecCChHHHHH---HH----HhCCcEEEecCC
Q 031484 55 ADLIVSRAGAMTCYE---IL----ATGKPSILIPSP 83 (159)
Q Consensus 55 ad~~i~~~G~~t~~E---al----~~g~P~I~~p~~ 83 (159)
+|++|+=+|+. +.. ++ ..|+|+|.+|..
T Consensus 84 ~d~IIaiGGGs-v~D~ak~vA~~~~rgip~i~VPTT 118 (344)
T cd08169 84 RTAIVAVGGGA-TGDVAGFVASTLFRGIAFIRVPTT 118 (344)
T ss_pred CcEEEEECCcH-HHHHHHHHHHHhccCCcEEEecCC
Confidence 78999866643 233 12 249999999974
No 269
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=55.60 E-value=62 Score=21.90 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=34.8
Q ss_pred hHHHHHhhc----CCeeEEEEcCccc--HHHHHHHhhcC-CCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEK----HNLFIIWQTGVEA--FNEMESLVRNH-PRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~----~~~~~~~~~G~~~--~~~l~~~~~~~-~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
+..++++++ .+-+++ +.|+.. -..+..++... -.+.+.+ ..+++.+..+.||++|+..|
T Consensus 14 a~~~ll~~~~~~~~gk~v~-VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 14 AVKELLNKEGVRLDGKKVL-VVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSP 80 (140)
T ss_pred HHHHHHHHcCCCCCCCEEE-EECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecC
Confidence 445566654 233454 456642 34455444332 3455554 33578899999999998766
No 270
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=55.38 E-value=67 Score=22.24 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=40.3
Q ss_pred HHHHHhhcCCeeEE-EEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHHH
Q 031484 5 YYQMLMEKHNLFII-WQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTCY 68 (159)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~~ 68 (159)
+.+.|+.+ +++.+ -+.|.....-+..+. ..+++.+.....| |.+-|..+ -++++++|+ +.+.
T Consensus 3 l~~~L~~~-Gv~~vFg~pG~~~~~l~~al~-~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~ 80 (162)
T cd07037 3 LVEELKRL-GVRDVVISPGSRSAPLALAAA-EHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV 80 (162)
T ss_pred HHHHHHHC-CCCEEEECCCcchHHHHHHHH-hCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH
Confidence 34555554 23332 344443333223322 2346776655543 45545433 345566663 3478
Q ss_pred HHHHhCCcEEEec
Q 031484 69 EILATGKPSILIP 81 (159)
Q Consensus 69 Eal~~g~P~I~~p 81 (159)
||..-+.|+|++.
T Consensus 81 ~A~~~~~Pvl~i~ 93 (162)
T cd07037 81 EAYYSGVPLLVLT 93 (162)
T ss_pred HHHhcCCCEEEEE
Confidence 9999999999983
No 271
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.35 E-value=61 Score=23.48 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=46.9
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHH---HHHHHHhCCcE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMT---CYEILATGKPS 77 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t---~~Eal~~g~P~ 77 (159)
+.++++.+++|+ +++-.|.. +.+..++.+..--++.+.+.. +++.++-...++... +|..| +.++..+|..+
T Consensus 44 ~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~i-PG~~TptEi~~A~~~Ga~~ 120 (201)
T PRK06015 44 DAIRAVAAEVEE--AIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLL-PGAATPSEVMALREEGYTV 120 (201)
T ss_pred HHHHHHHHHCCC--CEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEe-CCCCCHHHHHHHHHCCCCE
Confidence 445566666764 55566664 455655554433467776655 577777778887776 45444 44567788888
Q ss_pred EEe
Q 031484 78 ILI 80 (159)
Q Consensus 78 I~~ 80 (159)
|-+
T Consensus 121 vK~ 123 (201)
T PRK06015 121 LKF 123 (201)
T ss_pred EEE
Confidence 854
No 272
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=54.75 E-value=90 Score=23.52 Aligned_cols=66 Identities=17% Similarity=0.046 Sum_probs=38.5
Q ss_pred cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc--cHHHHHhhCceEEecCChH--------H-------HHHHHHhC
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH--SMDLAYAAADLIVSRAGAM--------T-------CYEILATG 74 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~--~~~~~l~~ad~~i~~~G~~--------t-------~~Eal~~g 74 (159)
.++.++++.+..+... .+.+ ++.-.+... .+.+.+..+|++|.-+|+. + +.-|..+|
T Consensus 26 ~~~~~~~v~s~~p~~~--~~~~----~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 26 PPGVEPTVLSNDPAET--AKLY----GVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCCeEEEecCChHHH--Hhhc----CceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 3677777776654322 2211 444443332 5677889999999755511 1 12244579
Q ss_pred CcEEEecCC
Q 031484 75 KPSILIPSP 83 (159)
Q Consensus 75 ~P~I~~p~~ 83 (159)
+|+++.+..
T Consensus 100 k~~~~~g~g 108 (298)
T TIGR03609 100 KPVILWGQG 108 (298)
T ss_pred CCEEEEecc
Confidence 999987664
No 273
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=54.51 E-value=62 Score=25.13 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=49.0
Q ss_pred hHHHHHhh-cCCeeEEE---EcCcc-----cHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHh-
Q 031484 4 LYYQMLME-KHNLFIIW---QTGVE-----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILAT- 73 (159)
Q Consensus 4 ~~~~~~~~-~~~~~~~~---~~G~~-----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~- 73 (159)
++.+-.+. .|+-++++ -+|-. ..+++.++-+.+|+..++-|...-.++.+.||++.+.++...+.+..-.
T Consensus 63 fMae~a~~l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~aeVka~aD~v~TSsna~~~v~~~~~~ 142 (310)
T TIGR00550 63 FMGETAKILNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTAEVKALADIVCTSSNAVKVVEHLDKD 142 (310)
T ss_pred hHHHHHHHhCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCHHHHHhCCEEEchHHHHHHHHhcccC
Confidence 45555555 56644443 22221 2344544433456777788887667889999999997776666665533
Q ss_pred CCcEEEecCC
Q 031484 74 GKPSILIPSP 83 (159)
Q Consensus 74 g~P~I~~p~~ 83 (159)
+..+|+.|..
T Consensus 143 ~~~Iif~pd~ 152 (310)
T TIGR00550 143 NKKILFLPDK 152 (310)
T ss_pred CCEEEEECch
Confidence 5668887653
No 274
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=54.07 E-value=1.1e+02 Score=24.08 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHhhcCC-eeEEEEcCcccH----HHHHHHhhcCCCeEE--eccc--c---cHHHHHh--hCceEEecCChHHHHH-
Q 031484 5 YYQMLMEKHN-LFIIWQTGVEAF----NEMESLVRNHPRLLL--TPFL--H---SMDLAYA--AADLIVSRAGAMTCYE- 69 (159)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~G~~~~----~~l~~~~~~~~~v~~--~~~~--~---~~~~~l~--~ad~~i~~~G~~t~~E- 69 (159)
+.+.++.... -++++++++... +.+++.+.....+.+ .+.. . ++.+.+. .+|++|+-+|+ ++..
T Consensus 24 l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGG-sv~D~ 102 (350)
T PRK00843 24 IGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAGDVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGGG-KVIDV 102 (350)
T ss_pred HHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcCCeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCCc-hHHHH
Confidence 3344444432 377788887532 334443332212322 2211 1 2333333 57999986664 3333
Q ss_pred ----HHHhCCcEEEecCCC
Q 031484 70 ----ILATGKPSILIPSPN 84 (159)
Q Consensus 70 ----al~~g~P~I~~p~~~ 84 (159)
|...|+|+|.+|..-
T Consensus 103 ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 103 AKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred HHHHHHhcCCCEEEeCCCc
Confidence 234599999999863
No 275
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=53.92 E-value=1.3e+02 Score=25.22 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=41.8
Q ss_pred hHHHHHhhcCCeeE-EEEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhCc----eEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFI-IWQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAAD----LIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~ad----~~i~~~G~------~t~ 67 (159)
.+.+.|..+ +++. .-+-|.....-+..+. ..+++.++....+ +.+-|+.+. ++++++|+ +.+
T Consensus 14 ~l~~~L~~~-GV~~vFgvpG~~~~~l~~~l~-~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i 91 (568)
T PRK07449 14 VILEELTRL-GVRHVVIAPGSRSTPLTLAAA-EHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAV 91 (568)
T ss_pred HHHHHHHHc-CCCEEEECCCCccHHHHHHHH-hCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHH
Confidence 444555553 3333 3344544333333322 2345766654432 555554333 45666663 348
Q ss_pred HHHHHhCCcEEEec
Q 031484 68 YEILATGKPSILIP 81 (159)
Q Consensus 68 ~Eal~~g~P~I~~p 81 (159)
.||...++|+|++.
T Consensus 92 ~~A~~~~~Pvl~Is 105 (568)
T PRK07449 92 IEAGLTGVPLIVLT 105 (568)
T ss_pred HHHhhcCCcEEEEE
Confidence 89999999999983
No 276
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=53.82 E-value=66 Score=23.56 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=43.2
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHHHHH---HHHhCCcE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMTCYE---ILATGKPS 77 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~~E---al~~g~P~ 77 (159)
+..+++.+.+| ++++-.|.. +-+.+++....-.++.+.+-. +++.+.-...++.+. +|-.|..| ++-+|.-.
T Consensus 53 e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~ip~~-PG~~TptEi~~Ale~G~~~ 129 (211)
T COG0800 53 EAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAKAANRYGIPYI-PGVATPTEIMAALELGASA 129 (211)
T ss_pred HHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHhCCCccc-CCCCCHHHHHHHHHcChhh
Confidence 45667777777 666667765 345555544333466666555 466666667777666 45445444 44456555
Q ss_pred E
Q 031484 78 I 78 (159)
Q Consensus 78 I 78 (159)
+
T Consensus 130 l 130 (211)
T COG0800 130 L 130 (211)
T ss_pred e
Confidence 5
No 277
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=53.48 E-value=34 Score=25.61 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=40.3
Q ss_pred CCeeEEEEcCcccHHHHHH-Hhhc------------------CCCeEEe--cccccHHHHH---hhCceEEec-CChHH-
Q 031484 13 HNLFIIWQTGVEAFNEMES-LVRN------------------HPRLLLT--PFLHSMDLAY---AAADLIVSR-AGAMT- 66 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~-~~~~------------------~~~v~~~--~~~~~~~~~l---~~ad~~i~~-~G~~t- 66 (159)
+.-++++.+|....+.+.. .... ..++... +|..+++..| ..+|++||+ ||+..
T Consensus 129 ~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~ 208 (249)
T PF02571_consen 129 GGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGF 208 (249)
T ss_pred CCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhh
Confidence 3357888899876666543 1100 0122221 2333455444 378889984 34222
Q ss_pred ---HHHHHHhCCcEEEecCC
Q 031484 67 ---CYEILATGKPSILIPSP 83 (159)
Q Consensus 67 ---~~Eal~~g~P~I~~p~~ 83 (159)
+.-|..+|+|+|++..|
T Consensus 209 ~eKi~AA~~lgi~vivI~RP 228 (249)
T PF02571_consen 209 DEKIEAARELGIPVIVIKRP 228 (249)
T ss_pred HHHHHHHHHcCCeEEEEeCC
Confidence 33478899999999665
No 278
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.48 E-value=45 Score=26.21 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=41.1
Q ss_pred hhcCCeeEEEEcCcccHH----HHHHHhhcCCCeEEec------------ccccHHHHHhhCceEEecCC--------hH
Q 031484 10 MEKHNLFIIWQTGVEAFN----EMESLVRNHPRLLLTP------------FLHSMDLAYAAADLIVSRAG--------AM 65 (159)
Q Consensus 10 ~~~~~~~~~~~~G~~~~~----~l~~~~~~~~~v~~~~------------~~~~~~~~l~~ad~~i~~~G--------~~ 65 (159)
+...+++++.+||..... -++.++ ++||.+.. .++..-++.+.-+++++.-| .+
T Consensus 25 ~~~~~~~IM~vCG~HthtI~kyGl~slL--PeNi~~i~GPGCPVCVtp~~~id~aiela~~~~~i~~TfGDm~RVPgs~~ 102 (364)
T COG0409 25 KLERPLRIMEVCGGHTHTIMKYGLRSLL--PENVEFIHGPGCPVCVTPMGRIDTAIELASSKDVIFCTFGDMMRVPGSPG 102 (364)
T ss_pred hccCceEEEEecCCchHHHHHhhHhhhC--ccceEEecCCCCCeEeeEHHHHHHHHHHhCCCCcEEEeccceeecCCCCc
Confidence 446789999999986422 233322 35776653 11223344445577776443 35
Q ss_pred HHHHHHHhC--CcEEEec
Q 031484 66 TCYEILATG--KPSILIP 81 (159)
Q Consensus 66 t~~Eal~~g--~P~I~~p 81 (159)
|++++-+-| +.++..|
T Consensus 103 SL~~~ka~G~DVRiVYS~ 120 (364)
T COG0409 103 SLLDAKAEGADVRIVYSP 120 (364)
T ss_pred chhhhhcCCccEEEEecH
Confidence 777777777 6666554
No 279
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=52.34 E-value=1.2e+02 Score=24.05 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=29.7
Q ss_pred HHHHHhhcCCeeEEEEcCccc--HHHHHHHhhcCC-CeEEecccc--------cHHHHH--hhCceEEecCCh
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA--FNEMESLVRNHP-RLLLTPFLH--------SMDLAY--AAADLIVSRAGA 64 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~--~~~l~~~~~~~~-~v~~~~~~~--------~~~~~l--~~ad~~i~~~G~ 64 (159)
+.+.+... .-++++++|+.. .+++.+.++... .+.+++..+ +..+.+ ..+|++|+-+|+
T Consensus 14 l~~~l~~~-~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 85 (374)
T cd08183 14 LPALAAEL-GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGG 85 (374)
T ss_pred HHHHHHHc-CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 34445544 247888888753 344444343222 334443222 122333 268999986664
No 280
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=51.72 E-value=1.1e+02 Score=24.09 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=43.4
Q ss_pred hhHHHHHhhcCCeeEEEEcCccc-----HHHHHHHhhcC-CCeEEec-cc--c------cHHHHHh--hCceEEecCChH
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEA-----FNEMESLVRNH-PRLLLTP-FL--H------SMDLAYA--AADLIVSRAGAM 65 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~-----~~~l~~~~~~~-~~v~~~~-~~--~------~~~~~l~--~ad~~i~~~G~~ 65 (159)
.-+.+.++.. + ++++++|+.. .+++...++.. -.+.++. +. + +..+.++ .+|.+|+=+|+
T Consensus 12 ~~l~~~l~~~-g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG- 88 (366)
T PF00465_consen 12 EELGEELKRL-G-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGG- 88 (366)
T ss_dssp GGHHHHHHCT-T-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESH-
T ss_pred HHHHHHHHhc-C-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC-
Confidence 3445566666 4 9989999842 24444434221 2333333 21 1 2344444 78999987664
Q ss_pred HHHHH-----HHhC-------------------CcEEEecCCC
Q 031484 66 TCYEI-----LATG-------------------KPSILIPSPN 84 (159)
Q Consensus 66 t~~Ea-----l~~g-------------------~P~I~~p~~~ 84 (159)
+++.+ +.+. +|+|.+|...
T Consensus 89 S~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~ 131 (366)
T PF00465_consen 89 SVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTA 131 (366)
T ss_dssp HHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSS
T ss_pred CcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCc
Confidence 33332 2223 7999999864
No 281
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=51.53 E-value=21 Score=26.88 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=24.2
Q ss_pred HHHH-hhCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 49 DLAY-AAADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 49 ~~~l-~~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
..++ ..-|++|| .||+ +..+|++.+|+|.|++..
T Consensus 85 ~~~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 85 SHILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HhhcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 3444 34699986 3453 347899999999999865
No 282
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=51.37 E-value=90 Score=22.49 Aligned_cols=103 Identities=13% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCeeEEEEcCcccHHHHHHHhhcCC----CeEEecccc---cHHHHH-----hhCceEEecCC--hHHHHHHH-------
Q 031484 13 HNLFIIWQTGVEAFNEMESLVRNHP----RLLLTPFLH---SMDLAY-----AAADLIVSRAG--AMTCYEIL------- 71 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~~~~~~~----~v~~~~~~~---~~~~~l-----~~ad~~i~~~G--~~t~~Eal------- 71 (159)
.+-++++..|....+.+.+.++..+ .+.++...+ +..... ...|+++..|. ...+++.+
T Consensus 124 ~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~~~~ 203 (249)
T PRK05928 124 KGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFSLAPELGRRE 203 (249)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHHHhcccchhH
Confidence 4567888888776666655544321 122232221 222222 26788876554 22333332
Q ss_pred -HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHh
Q 031484 72 -ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEIL 124 (159)
Q Consensus 72 -~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll 124 (159)
..+++++++ ++ ..++.+.+.|.-..+..++.+.+.+.+++.+.+
T Consensus 204 ~~~~~~~~ai-------G~--~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~ 248 (249)
T PRK05928 204 WLLSCKAVVI-------GE--RTAEALRELGIKVIIVPDSADNEALLRALKELL 248 (249)
T ss_pred HHhCCeEEEe-------CH--HHHHHHHHcCCCcceecCCCChHHHHHHHHHhc
Confidence 225566655 22 246677878765444445556788888776654
No 283
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=50.58 E-value=65 Score=20.62 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=37.3
Q ss_pred eEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc-ccHHHHHh--hCceEEecCCh----HHHHHHH-HhCCcEEEec
Q 031484 16 FIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL-HSMDLAYA--AADLIVSRAGA----MTCYEIL-ATGKPSILIP 81 (159)
Q Consensus 16 ~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~-~~~~~~l~--~ad~~i~~~G~----~t~~Eal-~~g~P~I~~p 81 (159)
+++++||.+- -..+++.++..+ .+.+.... .++.+... .+|++++.+-- ..+-+.. ..++|+.++|
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeC
Confidence 5788999862 244444443322 34443322 24555543 58999985431 2233322 4789999985
Q ss_pred C
Q 031484 82 S 82 (159)
Q Consensus 82 ~ 82 (159)
.
T Consensus 83 ~ 83 (104)
T PRK09590 83 P 83 (104)
T ss_pred H
Confidence 3
No 284
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=50.26 E-value=98 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=18.7
Q ss_pred CceEEecCChHHHHHHH-------HhCCcEEEecCC
Q 031484 55 ADLIVSRAGAMTCYEIL-------ATGKPSILIPSP 83 (159)
Q Consensus 55 ad~~i~~~G~~t~~Eal-------~~g~P~I~~p~~ 83 (159)
+|++|+=+|+ ++..+. ..|+|+|.+|..
T Consensus 93 ~d~IIavGGG-sv~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 93 SDTLIALGGG-VIGDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred CCEEEEEcCc-HHHHHHHHHHHHhcCCCCEEEcCch
Confidence 3999986664 333322 348999999974
No 285
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.49 E-value=85 Score=22.80 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=46.1
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHHH---HHHHHhCCcE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMTC---YEILATGKPS 77 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~---~Eal~~g~P~ 77 (159)
+.++++.+++|+ +++..|.. +.+..++.+..--++.+.+.. +++.++-...++... +|..|. ..|+.+|..+
T Consensus 48 ~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~i-PG~~TptEi~~A~~~Ga~~ 124 (204)
T TIGR01182 48 DAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPII-PGVATPSEIMLALELGITA 124 (204)
T ss_pred HHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEE-CCCCCHHHHHHHHHCCCCE
Confidence 456666667774 55566664 455555554333466666544 567777777777666 354444 4466788888
Q ss_pred EEe
Q 031484 78 ILI 80 (159)
Q Consensus 78 I~~ 80 (159)
+=+
T Consensus 125 vKl 127 (204)
T TIGR01182 125 LKL 127 (204)
T ss_pred EEE
Confidence 854
No 286
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=48.33 E-value=1.4e+02 Score=23.79 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=42.0
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEeccc---c---cH---HHHH--hhCceEEecCChHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTPFL---H---SM---DLAY--AAADLIVSRAGAMTC 67 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~~~---~---~~---~~~l--~~ad~~i~~~G~~t~ 67 (159)
+.+.++.+..-++++++|+. ..+++.+.++... .+.+++-+ | ++ .+.+ ..+|++|+-+|+ +.
T Consensus 22 l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGG-S~ 100 (383)
T PRK09860 22 AMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGG-SP 100 (383)
T ss_pred HHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc-hH
Confidence 34455555434777888863 2455555554322 23344322 1 22 2333 368999986664 33
Q ss_pred HH---HHH--------------------hCCcEEEecCC
Q 031484 68 YE---ILA--------------------TGKPSILIPSP 83 (159)
Q Consensus 68 ~E---al~--------------------~g~P~I~~p~~ 83 (159)
+. +++ ..+|+|++|..
T Consensus 101 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 101 HDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 34 222 25799999975
No 287
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=48.26 E-value=91 Score=24.22 Aligned_cols=74 Identities=15% Similarity=0.058 Sum_probs=46.7
Q ss_pred HHhhcCCeeEEEE--cCc-c-----cHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEE
Q 031484 8 MLMEKHNLFIIWQ--TGV-E-----AFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSIL 79 (159)
Q Consensus 8 ~~~~~~~~~~~~~--~G~-~-----~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~ 79 (159)
-++.+|+-+|++. .|. . ..+.+.+..+.+++..+.-+...-.++...||++.|.++..-..+..- ...+|+
T Consensus 157 ~~~~~p~k~~i~~~~~g~C~vh~~~t~e~v~~~~~~~p~a~VvvhpEc~~eV~~~aD~vgSTs~~i~~v~~~~-~~~~ii 235 (310)
T TIGR00550 157 YVQEQTLKDMILWPEQGHCSVHEKFTTEDLERLKEKYPDAEILVHPECEPEVVDLADFIGSTSQIIRFVLKSP-AQKFII 235 (310)
T ss_pred HHHhCCCCEEEeCCCCCCCcChhhCCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCEEecHHHHHHHHHhCC-CCeEEE
Confidence 3446677777554 332 1 245555544445666666666556789999999999777555555543 477888
Q ss_pred ecC
Q 031484 80 IPS 82 (159)
Q Consensus 80 ~p~ 82 (159)
.|.
T Consensus 236 ~TE 238 (310)
T TIGR00550 236 GTE 238 (310)
T ss_pred Ecc
Confidence 764
No 288
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=48.26 E-value=22 Score=25.54 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=20.2
Q ss_pred CceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 55 ADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 55 ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
-|++|+ .||+ +..+|++..|+|.|++..
T Consensus 92 pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~ 133 (196)
T PF01975_consen 92 PDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSL 133 (196)
T ss_dssp -SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEE
T ss_pred CCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEec
Confidence 799986 3443 337899999999999754
No 289
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=48.16 E-value=1.1e+02 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=16.3
Q ss_pred ecCChHHHHHHHHhCCcEEEecC
Q 031484 60 SRAGAMTCYEILATGKPSILIPS 82 (159)
Q Consensus 60 ~~~G~~t~~Eal~~g~P~I~~p~ 82 (159)
..-|.-.+.|||..|-=+|++-.
T Consensus 146 aylGa~pI~~AL~~GADIVI~GR 168 (362)
T PF07287_consen 146 AYLGAEPIVEALEAGADIVITGR 168 (362)
T ss_pred EecChHHHHHHHHcCCCEEEeCc
Confidence 44566678888888877777643
No 290
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=47.90 E-value=26 Score=26.35 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=26.0
Q ss_pred HHHHH--hhCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 48 MDLAY--AAADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l--~~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
+..++ ..-|+||| .||+ ...+|+...|+|.|++..
T Consensus 75 l~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~ 125 (252)
T COG0496 75 LNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISL 125 (252)
T ss_pred HHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeee
Confidence 66777 34899986 2343 346899999999999855
No 291
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=47.60 E-value=8.7 Score=22.35 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=18.7
Q ss_pred hCceEEecCChHHHHHHHHhCCcE
Q 031484 54 AADLIVSRAGAMTCYEILATGKPS 77 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~~g~P~ 77 (159)
..|.+++.-|+.|..||+..|++.
T Consensus 23 a~dhvL~~LGgrT~~eAL~~G~dp 46 (63)
T PF11248_consen 23 ARDHVLSELGGRTAAEALEAGVDP 46 (63)
T ss_pred HHhcchhhcCCcCHHHHHHcCCCH
Confidence 356677777888999999988763
No 292
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=47.46 E-value=94 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.0
Q ss_pred hCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+|++|+.+|+...+.. ...+|||-++..
T Consensus 64 ~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 92 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKS-RLSVPVILIKPS 92 (538)
T ss_pred CCcEEEECchHHHHHHh-hCCCCEEEecCC
Confidence 68999999887776665 578999999775
No 293
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.38 E-value=26 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=24.5
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++|+-+|.+|+++++. .++|++.+..
T Consensus 56 ~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 35899999999999999875 3789998764
No 294
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=46.93 E-value=63 Score=20.11 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=35.6
Q ss_pred eeEEEEcCccc------HHHHHHHhhcCC-CeEEec-ccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEE-ecCC
Q 031484 15 LFIIWQTGVEA------FNEMESLVRNHP-RLLLTP-FLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSIL-IPSP 83 (159)
Q Consensus 15 ~~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~-~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~-~p~~ 83 (159)
.+++++||.+- ...+++.++.++ ++.+.. -..++......+|++++.+- +.+. .-++|++- +|..
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~---~~~~-~~~ip~~~~~~ll 76 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR---VDRS-FGDIPLVHGMPFV 76 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc---cccc-cCCCCEEEEeecc
Confidence 36889999862 245555544322 345554 22356566678899998532 1121 11688653 4543
No 295
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=46.70 E-value=1.4e+02 Score=23.46 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=29.7
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEec-cc--c---cHHHH---H--hhCceEEecCCh
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTP-FL--H---SMDLA---Y--AAADLIVSRAGA 64 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~-~~--~---~~~~~---l--~~ad~~i~~~G~ 64 (159)
+.+.++....-++++++|+. ..+++++.++... .+.+++ .. | .+.+. + ..+|++|+=+|+
T Consensus 15 l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 91 (370)
T cd08192 15 LPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGG 91 (370)
T ss_pred HHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 33444544323778888864 2345555443221 333332 22 1 23233 2 357999986653
No 296
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=46.58 E-value=1.2e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=-0.156 Sum_probs=20.4
Q ss_pred HHHhhCceEEecCCh----HHHHH-HHHhCCcEEEecCC
Q 031484 50 LAYAAADLIVSRAGA----MTCYE-ILATGKPSILIPSP 83 (159)
Q Consensus 50 ~~l~~ad~~i~~~G~----~t~~E-al~~g~P~I~~p~~ 83 (159)
..+..++++|+..+- ..+.+ |-..|.|+..+..+
T Consensus 81 ~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 81 EFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred HHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence 446778888876552 12233 34558888877543
No 297
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=45.83 E-value=9.7 Score=29.76 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.3
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHH----hCCcEEEec
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILA----TGKPSILIP 81 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p 81 (159)
++...+..||++|+-+|.+|++-|.. -.+|+|-+.
T Consensus 98 ~lsq~i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvN 136 (395)
T KOG4180|consen 98 DLSQPIRWADMVISVGGDGTFLLAASRVIDDSKPVIGVN 136 (395)
T ss_pred hccCcCchhhEEEEecCccceeehhhhhhccCCceeeec
Confidence 34455899999999999899766555 569999873
No 298
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=45.11 E-value=57 Score=20.74 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=16.3
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE 24 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~ 24 (159)
..+.++++.+|+.+|++++-.+
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsg 74 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSG 74 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCC
Confidence 3567888889999998775544
No 299
>PRK05920 aromatic acid decarboxylase; Validated
Probab=44.96 E-value=82 Score=22.86 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceee
Q 031484 69 EILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 69 Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~ 105 (159)
+++..++|+++.|...+...-...|.+.+.+.|+-++
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 6788999999998742221123457777777776643
No 300
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=44.81 E-value=88 Score=20.51 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=31.7
Q ss_pred HHHHHHhhc-CCCeEEeccc-----ccHHHHHhhCceEEecCChHH----HHH-HHHhCCcEEEec
Q 031484 27 NEMESLVRN-HPRLLLTPFL-----HSMDLAYAAADLIVSRAGAMT----CYE-ILATGKPSILIP 81 (159)
Q Consensus 27 ~~l~~~~~~-~~~v~~~~~~-----~~~~~~l~~ad~~i~~~G~~t----~~E-al~~g~P~I~~p 81 (159)
+.+++.+.. .|.+.+..+. ++..+++..+|++|+...... +.+ +...++|+|...
T Consensus 59 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 59 EAAKERLQEINPDVEVEAIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHhcCceeeeeeecccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 334444432 4555555433 356788899999997655322 222 345789999763
No 301
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=44.62 E-value=65 Score=18.95 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=31.3
Q ss_pred eEEEEcCccc------HHHHHHHhhcCCCeEEecccc--cHHHH-HhhCceEEecCChHHHHHHHHhCCcEEEe
Q 031484 16 FIIWQTGVEA------FNEMESLVRNHPRLLLTPFLH--SMDLA-YAAADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 16 ~~~~~~G~~~------~~~l~~~~~~~~~v~~~~~~~--~~~~~-l~~ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
+++++||.+. ...+++.+ ++..+....+ ++... ....|+++|..- +. ..++|++.+
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~---~~~~~v~~~~~~~~~~~~~~~~DlIitT~~----l~--~~~~pvi~i 66 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLF---PEIEIIDVISLRELEEVDLDDYDLIISTVP----LE--DTDKPVIVV 66 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHC---CCceEEEEEeHHHHhhCcccCCCEEEEccc----cC--CCCCCEEEE
Confidence 5778888762 23333333 3232223222 34444 568999998542 11 467899976
No 302
>PRK08266 hypothetical protein; Provisional
Probab=44.41 E-value=1.9e+02 Score=24.11 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=41.4
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~ 67 (159)
.+.+.|... +++.++ +-|.....-+..+.+..+++.++....+ |.+-|+.+ -++++++|+ +.+
T Consensus 9 ~l~~~L~~~-Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi 87 (542)
T PRK08266 9 AIVAGLVAH-GVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL 87 (542)
T ss_pred HHHHHHHHc-CCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH
Confidence 444555553 444333 3344333322332222246776665543 55555433 255666662 358
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.||..-++|+|++
T Consensus 88 ~~A~~~~~Pvl~i 100 (542)
T PRK08266 88 LTAYGCNSPVLCL 100 (542)
T ss_pred HHHHhhCCCEEEE
Confidence 8999999999987
No 303
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.20 E-value=38 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=24.8
Q ss_pred HhhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 52 YAAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 52 l~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
...+|++|+-+|.+|++-++. .++|++-+..
T Consensus 31 ~~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 31 EDGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred cCCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 355899999999999998764 5789998754
No 304
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=44.02 E-value=32 Score=25.97 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHh--hCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 48 MDLAYA--AADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l~--~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
+..++. .-|++|| .||+ +..+|+..+|+|.|++..
T Consensus 79 l~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 LYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 444553 5689986 3453 346899999999999864
No 305
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=43.96 E-value=81 Score=22.09 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=38.7
Q ss_pred eeEEEEcCcccH-HHHHH----Hhhc-CCCeEEecccc-----------cHHHHHhhCceEEecC-----ChHHHHHHHH
Q 031484 15 LFIIWQTGVEAF-NEMES----LVRN-HPRLLLTPFLH-----------SMDLAYAAADLIVSRA-----GAMTCYEILA 72 (159)
Q Consensus 15 ~~~~~~~G~~~~-~~l~~----~~~~-~~~v~~~~~~~-----------~~~~~l~~ad~~i~~~-----G~~t~~Eal~ 72 (159)
++||+++|..++ ..+.+ +.+. .+++.+..|.. .+...++.||++|+.- -..-+.+++.
T Consensus 1 ~r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 1 MRFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIARADIIFGSMLFIEDHVRPLLPALE 80 (164)
T ss_pred CEEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHH
Confidence 478899998643 22222 2233 45676665442 2667789999999632 1223444444
Q ss_pred ---hCCcEEEe
Q 031484 73 ---TGKPSILI 80 (159)
Q Consensus 73 ---~g~P~I~~ 80 (159)
-.+|++++
T Consensus 81 ~~r~~~~a~i~ 91 (164)
T PF11965_consen 81 ARRDHCPAMII 91 (164)
T ss_pred HHHccCCEEEE
Confidence 36888876
No 306
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=43.96 E-value=29 Score=25.22 Aligned_cols=31 Identities=23% Similarity=0.125 Sum_probs=19.9
Q ss_pred HHHHHhhCceEEecCC-hHHHHH---HHHhCC-cEE
Q 031484 48 MDLAYAAADLIVSRAG-AMTCYE---ILATGK-PSI 78 (159)
Q Consensus 48 ~~~~l~~ad~~i~~~G-~~t~~E---al~~g~-P~I 78 (159)
...+...||++|.-+| .+|+-| ++..+. |+.
T Consensus 104 k~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~ 139 (205)
T COG1611 104 KRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVH 139 (205)
T ss_pred HHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcc
Confidence 4466789999987554 678645 455444 444
No 307
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=43.23 E-value=1.6e+02 Score=23.14 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=40.5
Q ss_pred HHHHHhhcCCeeEEEEcCcccH----HHHHHHhhcCC-CeEEeccc--c------cHHHHHh--hCceEEecCChHHHHH
Q 031484 5 YYQMLMEKHNLFIIWQTGVEAF----NEMESLVRNHP-RLLLTPFL--H------SMDLAYA--AADLIVSRAGAMTCYE 69 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~~----~~l~~~~~~~~-~v~~~~~~--~------~~~~~l~--~ad~~i~~~G~~t~~E 69 (159)
..+.+.+.. -++++++|+... +.+.+.++... .+.+..+. + +..+.+. .+|++|+-+|+ +++.
T Consensus 21 l~~~l~~~g-~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGG-sv~D 98 (366)
T PRK09423 21 LGEYLKPLG-KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGG-KTLD 98 (366)
T ss_pred HHHHHHHcC-CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecCh-HHHH
Confidence 344455544 477788887532 33333333221 22222222 1 2223332 67999987664 3344
Q ss_pred -----HHHhCCcEEEecCC
Q 031484 70 -----ILATGKPSILIPSP 83 (159)
Q Consensus 70 -----al~~g~P~I~~p~~ 83 (159)
+...++|+|.+|..
T Consensus 99 ~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 99 TAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHcCCCEEEeCCc
Confidence 23348999999985
No 308
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=43.03 E-value=1.3e+02 Score=22.23 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHhhcCCeeEEEEcCcccHHHHHHHhh-cCCCeEEec-cccc------HHHHH---hhCceEE-ecCC-hHHHHHHHH
Q 031484 6 YQMLMEKHNLFIIWQTGVEAFNEMESLVR-NHPRLLLTP-FLHS------MDLAY---AAADLIV-SRAG-AMTCYEILA 72 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~~~~~l~~~~~-~~~~v~~~~-~~~~------~~~~l---~~ad~~i-~~~G-~~t~~Eal~ 72 (159)
...+...|.++++..++..... +.+++ ..+.+.+++ |.|+ ++++. ..+|+++ |.+. ..|+.|++.
T Consensus 17 ~~yv~~~~gF~~vg~A~~~~ea--~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr 94 (224)
T COG4565 17 RRYVKQIPGFSVVGTAGTLEEA--KMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALR 94 (224)
T ss_pred HHHHHhCCCceEEEeeccHHHH--HHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHh
Confidence 3456667888887776654221 12222 245777776 5552 22222 2588865 4333 678999999
Q ss_pred hCCcEE
Q 031484 73 TGKPSI 78 (159)
Q Consensus 73 ~g~P~I 78 (159)
+|+==-
T Consensus 95 ~Gv~DY 100 (224)
T COG4565 95 YGVVDY 100 (224)
T ss_pred cCchhh
Confidence 996433
No 309
>PRK10736 hypothetical protein; Provisional
Probab=42.92 E-value=1.8e+02 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=31.3
Q ss_pred cCCh-HHHHHHHHhCCcEEEecCCCCCCch-HHHHHHHHHHcCceeeeccCCCChhHHHHHH
Q 031484 61 RAGA-MTCYEILATGKPSILIPSPNVAEGH-QFKNASLMAKLADSRIITEDELDSITLETTI 120 (159)
Q Consensus 61 ~~G~-~t~~Eal~~g~P~I~~p~~~~~~~~-q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l 120 (159)
+||+ .|.-.|+-+|+++.++|-. +.+. ..++ ..+.+.|+..+.. ++++.+.+
T Consensus 230 kSGsliTA~~Al~~gR~VfavPG~--i~~~~s~G~-n~LI~~GA~lv~~-----~~Di~~~l 283 (374)
T PRK10736 230 RSGSLVTARCALEQGRDVFALPGP--IGNPGSEGP-HWLIKQGAYLVTS-----PEDILENL 283 (374)
T ss_pred CCchHHHHHHHHHhCCeEEEEcCC--CCCccchhH-HHHHHCCCEEeCC-----HHHHHHHh
Confidence 5674 5666799999999999854 2222 2222 3456667443332 55666555
No 310
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=42.90 E-value=35 Score=25.69 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred hCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 54 AADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 54 ~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
.-|++|| .||+ +..+|+..+|+|.|++..
T Consensus 87 ~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 87 NIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred CCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 4699986 3453 346899999999998855
No 311
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=42.58 E-value=1.3e+02 Score=21.82 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=18.6
Q ss_pred cCCh-HHHHHHHHhCCcEEEecCCCCCCch-HHHHHHHHHHcCc
Q 031484 61 RAGA-MTCYEILATGKPSILIPSPNVAEGH-QFKNASLMAKLAD 102 (159)
Q Consensus 61 ~~G~-~t~~Eal~~g~P~I~~p~~~~~~~~-q~~~~~~~~~~~~ 102 (159)
.+|+ .|+-.|+-+|+|+.++|... .++ ..++ ..+.+.|+
T Consensus 167 ~sGt~~ta~~A~~~gr~v~~vp~~~--~~~~~~G~-~~Li~~GA 207 (212)
T PF02481_consen 167 KSGTLHTARFALEQGRPVFAVPGPI--DDPNSEGN-NELIKEGA 207 (212)
T ss_dssp T-THHHHHHHHHHHT--EEE----T--T-GGGHHH-HHHHHTT-
T ss_pred CChHHHHHHHHHHcCCeEEEEeCCC--CCcccHHH-HHHHHcCC
Confidence 4454 56677999999999987652 232 2333 34556663
No 312
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=42.20 E-value=91 Score=20.66 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=23.8
Q ss_pred eEEEEcCcccHHHHHHHhhcC-CCeEEeccccc-HHHHHhhCc
Q 031484 16 FIIWQTGVEAFNEMESLVRNH-PRLLLTPFLHS-MDLAYAAAD 56 (159)
Q Consensus 16 ~~~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~~-~~~~l~~ad 56 (159)
.+++++|..++..+.+.++.. .+|.+.++... -.++...||
T Consensus 102 ~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d 144 (149)
T cd06167 102 TIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD 144 (149)
T ss_pred EEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence 566788887665554444433 36677777633 334445665
No 313
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.10 E-value=1.6e+02 Score=22.66 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHhhc----CCeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEK----HNLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~----~~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++ .+-+++ +.|++. =..+..++.. .-.|.+.. ..+++.++++.||++|+..|
T Consensus 145 ii~lL~~~~i~l~Gk~vv-ViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG 210 (285)
T PRK14189 145 VMKMLESIGIPLRGAHAV-VIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVG 210 (285)
T ss_pred HHHHHHHcCCCCCCCEEE-EECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCC
Confidence 44566664 233454 446542 2334333322 23454443 44689999999999998777
No 314
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=41.93 E-value=35 Score=25.66 Aligned_cols=35 Identities=34% Similarity=0.448 Sum_probs=24.6
Q ss_pred HHHHH-hhCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 48 MDLAY-AAADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l-~~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
+..++ ..-|++|| .||+ +..+|+...|+|.|++..
T Consensus 79 l~~~~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 79 YDVIMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred HHhhccCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 33444 35789986 3453 346899999999999865
No 315
>PRK08611 pyruvate oxidase; Provisional
Probab=41.92 E-value=2.1e+02 Score=24.09 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=40.1
Q ss_pred hHHHHHhhcCCeeEE-EEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFII-WQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~ 67 (159)
++.+.|.++ +++-+ -+-|.....-+..+.+..+++.+.....+ |.+-|+.+ -++++++|+ +.+
T Consensus 9 ~l~~~L~~~-GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl 87 (576)
T PRK08611 9 ALVKLLQDW-GIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL 87 (576)
T ss_pred HHHHHHHHc-CCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH
Confidence 445555553 33333 34454433323332222245666554433 44444433 335565652 347
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.||..-++|+|++
T Consensus 88 a~A~~~~~Pvl~I 100 (576)
T PRK08611 88 YDAKMDHVPVLAL 100 (576)
T ss_pred HHHhhcCCCEEEE
Confidence 8999999999997
No 316
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=41.76 E-value=77 Score=18.94 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=29.0
Q ss_pred CC-eEEeccc-ccHHH-HHhhCceEEecCC---hHHHHHHHHhCCcEEEe
Q 031484 37 PR-LLLTPFL-HSMDL-AYAAADLIVSRAG---AMTCYEILATGKPSILI 80 (159)
Q Consensus 37 ~~-v~~~~~~-~~~~~-~l~~ad~~i~~~G---~~t~~Eal~~g~P~I~~ 80 (159)
++ |.+.... |.... .+..+..+|+..| +.+..-|-.+|+|+|+-
T Consensus 10 ~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 10 EGVILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp STEEEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred CCEEEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 44 5555544 44445 7788888888666 34566788899999985
No 317
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=41.37 E-value=1.1e+02 Score=20.73 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=50.4
Q ss_pred eEEEEcCccc-HHHHHHHhhcCCCeEEecccccHH---HHHh--hCceEEecC---C--hHHHHHHHHhCCcEEEecCCC
Q 031484 16 FIIWQTGVEA-FNEMESLVRNHPRLLLTPFLHSMD---LAYA--AADLIVSRA---G--AMTCYEILATGKPSILIPSPN 84 (159)
Q Consensus 16 ~~~~~~G~~~-~~~l~~~~~~~~~v~~~~~~~~~~---~~l~--~ad~~i~~~---G--~~t~~Eal~~g~P~I~~p~~~ 84 (159)
+++++..... ...+.+.+...+.........+.. ..+. ..|+++... + +..+++.+....|+|++...
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~- 81 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVH- 81 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECC-
Confidence 4544444332 445555443333343332222222 2332 357777532 2 23445555567888876432
Q ss_pred CCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHHhc
Q 031484 85 VAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEILG 125 (159)
Q Consensus 85 ~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ll~ 125 (159)
.........+.....+++..+. +.+.+...+..++.
T Consensus 82 ---~~~~~~~~~~~~ga~~~i~kp~--~~~~l~~~i~~~~~ 117 (196)
T PRK10360 82 ---DSPALVEQALNAGARGFLSKRC--SPDELIAAVHTVAT 117 (196)
T ss_pred ---CCHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHc
Confidence 1112222333333335555543 37888888888765
No 318
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.28 E-value=1.6e+02 Score=22.59 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=33.7
Q ss_pred hHHHHHhhcC----CeeEEEEcCcc-c-HHHHHHHhh-cCCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVE-A-FNEMESLVR-NHPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~-~-~~~l~~~~~-~~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++++ |++ . =..+..++. ..-.|.+.. +.+++.++.+.||++|+..|
T Consensus 143 avi~lL~~~~i~l~Gk~vvVv-Grs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 143 GVMRLLKHYHIEIKGKDVVII-GASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVG 209 (285)
T ss_pred HHHHHHHHhCCCCCCCEEEEE-CCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecC
Confidence 3445666642 3356554 543 2 123333332 223555543 45678899999999998766
No 319
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.59 E-value=1.6e+02 Score=22.59 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.0
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|++. =..+..++.. ...|.+. ..++++.++.+.||++|+..|
T Consensus 144 vi~ll~~~~i~l~Gk~vv-ViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvG 209 (282)
T PRK14182 144 VMRMLDEARVDPKGKRAL-VVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIG 209 (282)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecC
Confidence 445666642 33454 456642 2333333322 2344443 344688999999999998777
No 320
>PLN02573 pyruvate decarboxylase
Probab=40.37 E-value=2.3e+02 Score=23.99 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=41.7
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhCc---eEEecCC------hHHHH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAAD---LIVSRAG------AMTCY 68 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~ad---~~i~~~G------~~t~~ 68 (159)
.+.+.|.+. +++.++ +.|.....-+..+.+ .+++.++....+ |.+-|+.+. ++++.+| .+.+.
T Consensus 21 ~l~~~L~~~-Gv~~vFGvpG~~~~~l~dal~~-~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~~n~~~gla 98 (578)
T PLN02573 21 HLARRLVEI-GVTDVFSVPGDFNLTLLDHLIA-EPGLNLIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIA 98 (578)
T ss_pred HHHHHHHHc-CCCEEEECCCCchHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHH
Confidence 344555553 334333 445433333333222 245666554433 666666554 5555555 23578
Q ss_pred HHHHhCCcEEEec
Q 031484 69 EILATGKPSILIP 81 (159)
Q Consensus 69 Eal~~g~P~I~~p 81 (159)
+|.+-++|+|++.
T Consensus 99 ~A~~d~~Pvl~I~ 111 (578)
T PLN02573 99 GAYSENLPVICIV 111 (578)
T ss_pred HHHHhCCCEEEEE
Confidence 9999999999983
No 321
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=40.37 E-value=83 Score=18.92 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=32.4
Q ss_pred eEEEEcCccc------HHHHHHHhhcCC-CeEEec-ccccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEe
Q 031484 16 FIIWQTGVEA------FNEMESLVRNHP-RLLLTP-FLHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 16 ~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~-~~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
+++++||.+. ...+++.+.... ...+.. ...+..+.+..+|++++..-... ..++|+|.+
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~~~~~~Dliist~~~~~-----~~~~p~i~v 69 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVSTTKVPE-----DYGIPVING 69 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhcccCCCcEEEEcCCcCC-----CCCCCEEEE
Confidence 5778888752 234555443222 112221 11234445678999998544221 347899876
No 322
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=40.37 E-value=1.9e+02 Score=23.02 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHHHh--hCceEEecCChHHHHHHHH---hCCcEEEecCC
Q 031484 48 MDLAYA--AADLIVSRAGAMTCYEILA---TGKPSILIPSP 83 (159)
Q Consensus 48 ~~~~l~--~ad~~i~~~G~~t~~Eal~---~g~P~I~~p~~ 83 (159)
..+.|. .+|+++..+|.+|.-..+. ..+|++.+|..
T Consensus 92 ~~r~~~~~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaG 132 (355)
T COG3199 92 AVRRMVERGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAG 132 (355)
T ss_pred HHHHHHhcCceEEEEeCCCccHHHHHhhccCCCceEeeccc
Confidence 445554 4999999888777555444 49999999763
No 323
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.32 E-value=1.7e+02 Score=22.48 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=33.2
Q ss_pred HHHHHhhc----CCeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEK----HNLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~----~~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++ .+-++++ .|++. =..+..++.. ...|.+. .+++++.++.+.||++|+..|
T Consensus 144 vi~lL~~~~i~l~Gk~vvV-iGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvG 209 (281)
T PRK14183 144 VMELLEEYEIDVKGKDVCV-VGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVG 209 (281)
T ss_pred HHHHHHHcCCCCCCCEEEE-ECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecC
Confidence 44566664 2335654 45532 2233333322 2344443 355789999999999998776
No 324
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=40.22 E-value=1.4e+02 Score=24.76 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCcEEEecCCCCCCchHH-HHHHHHH-HcCceee-eccCCCChhHHHHHHHHHhc
Q 031484 65 MTCYEILATGKPSILIPSPNVAEGHQF-KNASLMA-KLADSRI-ITEDELDSITLETTIEEILG 125 (159)
Q Consensus 65 ~t~~Eal~~g~P~I~~p~~~~~~~~q~-~~~~~~~-~~~~g~~-~~~~~~~~~~l~~~l~~ll~ 125 (159)
.++-|+-..|+|+|++-...-+..++. ..++.+. +.+..++ ++...++.+++...+.++|.
T Consensus 171 rvI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 171 RVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 368899999999998733211112211 1233333 3355433 55567778888888887753
No 325
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=40.18 E-value=1.3e+02 Score=20.97 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=31.7
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhcC-CCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRNH-PRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~~-~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++ +.|++. -..+..++... ..+.+.. +.+++.+..+.||++|+..|
T Consensus 22 aii~lL~~~~~~l~Gk~v~-VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 22 AIIELLEYYGIDLEGKKVV-VVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp HHHHHHHHTT-STTT-EEE-EE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SS
T ss_pred HHHHHHHhcCCCCCCCEEE-EECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeec
Confidence 3445666642 22454 456542 23344444332 2444443 44689999999999999777
No 326
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=40.06 E-value=1.9e+02 Score=22.97 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=25.5
Q ss_pred eEEEEcCccc------HHHHHHHhhcCC-CeEEec-cc--c------cHHHHHh--hCceEEecCCh
Q 031484 16 FIIWQTGVEA------FNEMESLVRNHP-RLLLTP-FL--H------SMDLAYA--AADLIVSRAGA 64 (159)
Q Consensus 16 ~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~-~~--~------~~~~~l~--~ad~~i~~~G~ 64 (159)
++++++|+.. .+++.+.++... .+.+++ .. | +..+.+. .+|++|+-+|+
T Consensus 28 r~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 94 (383)
T cd08186 28 KVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGG 94 (383)
T ss_pred EEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 6888888642 345555544322 233443 22 1 2333332 67999986663
No 327
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.87 E-value=1.4e+02 Score=21.43 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=34.1
Q ss_pred EEEcCcccHHHHHHHhhcC-CCeEEecccccHHHHHhhCceEEecCChHHHHHHH--------------HhCCcEEEecC
Q 031484 18 IWQTGVEAFNEMESLVRNH-PRLLLTPFLHSMDLAYAAADLIVSRAGAMTCYEIL--------------ATGKPSILIPS 82 (159)
Q Consensus 18 ~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~Eal--------------~~g~P~I~~p~ 82 (159)
++-.|.++..++.+.++.. -.+.+.... +-+..+|.+|.++++. ..+++ ..|+|++-+-.
T Consensus 4 iidyg~gN~~s~~~al~~~g~~~~~v~~~----~~l~~~D~lIlPG~g~-~~~~~~~L~~~gl~~~i~~~~g~PvlGICl 78 (192)
T PRK13142 4 IVDYGLGNISNVKRAIEHLGYEVVVSNTS----KIIDQAETIILPGVGH-FKDAMSEIKRLNLNAILAKNTDKKMIGICL 78 (192)
T ss_pred EEEcCCccHHHHHHHHHHcCCCEEEEeCH----HHhccCCEEEECCCCC-HHHHHHHHHHCCcHHHHHHhCCCeEEEECH
Confidence 4556666666666655432 244544322 3356799999865522 12222 35899997754
No 328
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=39.75 E-value=1.5e+02 Score=21.85 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=29.8
Q ss_pred cCChHHHHHHHH-hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeecc
Q 031484 61 RAGAMTCYEILA-TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITE 108 (159)
Q Consensus 61 ~~G~~t~~Eal~-~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~ 108 (159)
.+|+...-|.+. .++|.|++... +...-.+.+++.|.|+++-.
T Consensus 73 aPGP~kARE~l~~s~~PaiiigDa-----Pg~~vkdeleeqGlGYIivk 116 (277)
T COG1927 73 APGPKKAREILSDSDVPAIIIGDA-----PGLKVKDELEEQGLGYIIVK 116 (277)
T ss_pred CCCchHHHHHHhhcCCCEEEecCC-----ccchhHHHHHhcCCeEEEec
Confidence 347777778776 79999998543 22223466889999988654
No 329
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=39.69 E-value=1.4e+02 Score=21.51 Aligned_cols=47 Identities=6% Similarity=0.021 Sum_probs=25.6
Q ss_pred CCcEEEecCCCCCCchHHHHHHHHHHcCc-eeeeccCCCChhHHHHHHHHHhcCH
Q 031484 74 GKPSILIPSPNVAEGHQFKNASLMAKLAD-SRIITEDELDSITLETTIEEILGNE 127 (159)
Q Consensus 74 g~P~I~~p~~~~~~~~q~~~~~~~~~~~~-g~~~~~~~~~~~~l~~~l~~ll~~~ 127 (159)
+.|+|+.. +.+.....+...+.|+ |+++.+-+ +..+...+.-..+..
T Consensus 77 ~~piv~lt-----~~s~p~~i~~a~~~Gv~ayivkpi~--~~rl~p~L~vA~srf 124 (194)
T COG3707 77 ARPIVALT-----AYSDPALIEAAIEAGVMAYIVKPLD--ESRLLPILDVAVSRF 124 (194)
T ss_pred CCCEEEEE-----ccCChHHHHHHHHcCCeEEEecCcc--hhhhhHHHHHHHHHH
Confidence 45666642 2333445566666666 66665533 566666665444433
No 330
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=39.57 E-value=64 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=20.0
Q ss_pred hCceEEec-CChH----HHHHHHHhCCcEEEecCC
Q 031484 54 AADLIVSR-AGAM----TCYEILATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~-~G~~----t~~Eal~~g~P~I~~p~~ 83 (159)
.+|++||+ ||+. -+.-|..+|+|+|++..+
T Consensus 190 ~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 190 RIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 67888874 3421 133367789999998665
No 331
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=39.55 E-value=1.6e+02 Score=22.07 Aligned_cols=73 Identities=8% Similarity=0.031 Sum_probs=38.6
Q ss_pred HHHHhhcCCeeEEEEcCcccHH----HHHHHhhcC-CCeEEecccccHHHHHhhCceEEecCC----hHHHHHHHHhCCc
Q 031484 6 YQMLMEKHNLFIIWQTGVEAFN----EMESLVRNH-PRLLLTPFLHSMDLAYAAADLIVSRAG----AMTCYEILATGKP 76 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~~~~----~l~~~~~~~-~~v~~~~~~~~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~P 76 (159)
.+.+...++++++.++.+.... ...+..... ..+.++. ++.++...+|++|--+. ...+..++..|+|
T Consensus 18 ~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~---d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~ 94 (266)
T TIGR00036 18 IKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTD---DLEAVETDPDVLIDFTTPEGVLNHLKFALEHGVR 94 (266)
T ss_pred HHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeC---CHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCC
Confidence 3445556888887766632111 111111111 1333332 34344356899873232 2446679999999
Q ss_pred EEEec
Q 031484 77 SILIP 81 (159)
Q Consensus 77 ~I~~p 81 (159)
+++..
T Consensus 95 vVigt 99 (266)
T TIGR00036 95 LVVGT 99 (266)
T ss_pred EEEEC
Confidence 99853
No 332
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=39.42 E-value=43 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=23.6
Q ss_pred hCceEEecCChHHHHHHHHhCCcEEEe
Q 031484 54 AADLIVSRAGAMTCYEILATGKPSILI 80 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~~g~P~I~~ 80 (159)
.-|++|+..+..+..-|-..|+|+|.+
T Consensus 93 ~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 93 NPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred CCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 459999998888888899999999965
No 333
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.23 E-value=1.5e+02 Score=21.59 Aligned_cols=77 Identities=9% Similarity=0.116 Sum_probs=44.8
Q ss_pred hhHHHHHhhcCC-eeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHH---HHHHHHhCCc
Q 031484 3 NLYYQMLMEKHN-LFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMT---CYEILATGKP 76 (159)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t---~~Eal~~g~P 76 (159)
+.+.++.+++++ -.+++-.|.. +.++.++....--++.+.+.. +++.++-...++.+- +|..| +.+++.+|.-
T Consensus 53 ~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~i-PG~~T~~E~~~A~~~Gad 131 (213)
T PRK06552 53 EVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYL-PGCMTVTEIVTALEAGSE 131 (213)
T ss_pred HHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEE-CCcCCHHHHHHHHHcCCC
Confidence 455666666653 2566666764 355555544333356665544 567777777777665 34333 3445567777
Q ss_pred EEEe
Q 031484 77 SILI 80 (159)
Q Consensus 77 ~I~~ 80 (159)
.|-+
T Consensus 132 ~vkl 135 (213)
T PRK06552 132 IVKL 135 (213)
T ss_pred EEEE
Confidence 7765
No 334
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=39.13 E-value=1.8e+02 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=19.5
Q ss_pred hCceEEecCChHHHHHHHH------h------CCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEILA------T------GKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~------~------g~P~I~~p~~ 83 (159)
.+|++|+=+|+ +++.+.- . ++|+|.+|..
T Consensus 78 ~~d~IiaiGGG-s~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 78 KPDIVIALGGG-SAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CCCEEEEECCc-hHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 58999986553 4455331 1 3799999985
No 335
>PF05729 NACHT: NACHT domain
Probab=38.52 E-value=1e+02 Score=20.38 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=21.1
Q ss_pred HHHHHhh--cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccc
Q 031484 5 YYQMLME--KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLH 46 (159)
Q Consensus 5 ~~~~~~~--~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~ 46 (159)
+..+++. .+++++++.+-+.....+.+.+.....+.+.++.+
T Consensus 109 l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 109 LSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 4444554 45666665554444444444433333455666653
No 336
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=38.12 E-value=1.1e+02 Score=21.39 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=22.7
Q ss_pred CCCChhHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 031484 109 DELDSITLETTIEEILGNEALMAEMSERALKAAKPGASADIAQH 152 (159)
Q Consensus 109 ~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (159)
+|++|+.+++++-.+-.-=+.|++...-...+....+.++..+.
T Consensus 98 ~DF~Pd~Ia~qVp~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~ 141 (159)
T TIGR03358 98 DDFSPDAVAKQVPELKKLLEAREALRDLKGPLDNNPDLRKLLQE 141 (159)
T ss_pred ccCCHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777777777766644334444444443344333344444333
No 337
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=38.11 E-value=2.1e+02 Score=23.03 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred HHHHHh--hCceEEec-C---ChHHHHHHHHhCCcEEEe
Q 031484 48 MDLAYA--AADLIVSR-A---GAMTCYEILATGKPSILI 80 (159)
Q Consensus 48 ~~~~l~--~ad~~i~~-~---G~~t~~Eal~~g~P~I~~ 80 (159)
+.++.. .+|+++.. + |.-.+++|+..|+++...
T Consensus 83 ~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA 121 (385)
T PRK05447 83 LCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA 121 (385)
T ss_pred HHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence 445554 35777742 2 334568999999999874
No 338
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=38.01 E-value=66 Score=22.81 Aligned_cols=48 Identities=10% Similarity=0.250 Sum_probs=26.3
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEE-ecCC
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIV-SRAG 63 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i-~~~G 63 (159)
+++..+-+.+|+.++.+++|......+. .| .+..+++..+.+++ .+.|
T Consensus 82 ~tl~~l~~~~p~~~~~~iiG~D~l~~l~------------~W-~~~~~i~~~~~~iv~~R~g 130 (193)
T TIGR00482 82 DTLKHLKKKYPDVELYFIIGADALRSFP------------LW-KDWQELLELVHLVIVPRPG 130 (193)
T ss_pred HHHHHHHHHCCCCeEEEEEcHHHhhhhc------------cc-cCHHHHHHhCcEEEEeCCC
Confidence 3444555556666666666644322211 22 25677888888765 4555
No 339
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=37.71 E-value=2.1e+02 Score=22.91 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=36.3
Q ss_pred CeEEecccc--cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCC
Q 031484 38 RLLLTPFLH--SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 38 ~v~~~~~~~--~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+.+++|++ +..+++-.||+-+.++ --|..=|.-+|+|+|=-.++
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfVRG-EDSFVRAqWAgkPfvWhIYP 289 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFVRG-EDSFVRAQWAGKPFVWHIYP 289 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEeec-hhHHHHHHHcCCCceeeccc
Confidence 456778885 6889999999999874 45788999999999964444
No 340
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.68 E-value=1.9e+02 Score=22.24 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=33.8
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-++ ++.|++. =..+..++.. ...|.+. ..++++.++.+.||++|+..|
T Consensus 142 avi~lL~~~~i~l~Gk~v-vViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG 208 (282)
T PRK14169 142 GIMALLDAYDIDVAGKRV-VIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVG 208 (282)
T ss_pred HHHHHHHHhCCCCCCCEE-EEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccC
Confidence 3445666642 3345 4456642 2333333322 2345444 455789999999999998766
No 341
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=37.33 E-value=95 Score=18.75 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=31.3
Q ss_pred eEEEEcCccc------HHHHHHHhhcCC-CeEEeccc-ccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEec
Q 031484 16 FIIWQTGVEA------FNEMESLVRNHP-RLLLTPFL-HSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 16 ~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
+++++||.+. ...+++.++... ...+.... .+.. ..+|++++..-...-+......+|+|.+.
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~---~~~Dliitt~~l~~~~~~~~~~~~vi~v~ 72 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELP---SDADLVVTHASLTDRAKKKAPQAQHLSVD 72 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhCC---CCCCEEEEChHHHHHHHhcCCCCeEEEEe
Confidence 5778898752 234444444322 12222111 1222 78999999533221111123378999873
No 342
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.31 E-value=1.5e+02 Score=24.46 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=22.7
Q ss_pred HHHhhCceEEecCC----hHHHHHHHHhCCcEE
Q 031484 50 LAYAAADLIVSRAG----AMTCYEILATGKPSI 78 (159)
Q Consensus 50 ~~l~~ad~~i~~~G----~~t~~Eal~~g~P~I 78 (159)
.+...+|++|..+| .-.+-++...|+|++
T Consensus 65 ~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 65 EDLAEFDLVVKSPGIPPTHPLVEAAKAAGIEII 97 (448)
T ss_pred hccccCCEEEECCCCCCCCHHHHHHHHcCCcEE
Confidence 67889999998888 233566888999987
No 343
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=37.26 E-value=20 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=21.5
Q ss_pred cHHHHHhhCceEEecCC-----------hHHHHH-HHHhCCcEEEec
Q 031484 47 SMDLAYAAADLIVSRAG-----------AMTCYE-ILATGKPSILIP 81 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G-----------~~t~~E-al~~g~P~I~~p 81 (159)
++.+.+..||++|+-.| +..+.+ +-.+++|++++-
T Consensus 277 ~l~~~l~~aDlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~ 323 (377)
T PF02595_consen 277 GLEERLEDADLVITGEGRLDAQTLAGKVPGGVARLAKKHGVPVIAVA 323 (377)
T ss_dssp THHHHCCC-SEEEE--CECSTTTTTTCHHHHHHCCHCCTT--EEEEE
T ss_pred CHHHHhcCCCEEEECccccccccCCCcHHHHHHHHHHHcCCcEEEEe
Confidence 58888999999998433 233444 446899999873
No 344
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=36.99 E-value=2.1e+02 Score=22.60 Aligned_cols=78 Identities=19% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHhhcCCeeEEEEcCccc----HHHHHHHhhcCC-Ce--EEec-cc--c------cHHHHHh--hCc---eEEecCC
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA----FNEMESLVRNHP-RL--LLTP-FL--H------SMDLAYA--AAD---LIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~----~~~l~~~~~~~~-~v--~~~~-~~--~------~~~~~l~--~ad---~~i~~~G 63 (159)
+.+.++....-++++++++.- .+.+.+.++... .+ .+++ -. + +..+.+. .+| ++|+=+|
T Consensus 14 l~~~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG 93 (355)
T cd08197 14 VLGYLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG 93 (355)
T ss_pred HHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC
Confidence 344455544347778888753 234444443221 22 2222 11 1 2223332 455 7887655
Q ss_pred hHHHHHHH---H----hCCcEEEecCC
Q 031484 64 AMTCYEIL---A----TGKPSILIPSP 83 (159)
Q Consensus 64 ~~t~~Eal---~----~g~P~I~~p~~ 83 (159)
+ ++..+. + -|+|+|.+|..
T Consensus 94 G-sv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 94 G-VVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred c-HHHHHHHHHHHHhccCCCEEEecCc
Confidence 3 333422 1 38999999984
No 345
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=36.92 E-value=2.5e+02 Score=23.48 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=39.3
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhh----CceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAA----ADLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~----ad~~i~~~G~------~t~ 67 (159)
.+.+.|... +++-++ +-|.....-+..+. ..++++++....+ +.+-|+. .-++++++|+ +.+
T Consensus 13 ~l~~~L~~~-GV~~vFg~pG~~~~~l~~al~-~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi 90 (557)
T PRK08199 13 ILVDALRAN-GVERVFCVPGESYLAVLDALH-DETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV 90 (557)
T ss_pred HHHHHHHHc-CCCEEEeCCCcchhHHHHHhh-ccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH
Confidence 444555553 333333 34443333233322 2234665554433 4444433 3346666662 348
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.+|..-++|+|++
T Consensus 91 ~~A~~~~~Pvl~i 103 (557)
T PRK08199 91 HTAFQDSTPMILF 103 (557)
T ss_pred HHHhhcCCCEEEE
Confidence 8999999999987
No 346
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=36.81 E-value=3.5e+02 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=26.2
Q ss_pred ccHHHHHhhCceEEecCC----hHHHHHHHHhCCcEEEec
Q 031484 46 HSMDLAYAAADLIVSRAG----AMTCYEILATGKPSILIP 81 (159)
Q Consensus 46 ~~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~P~I~~p 81 (159)
.++..+++.+|+||+... ...+..|+..|++++...
T Consensus 640 e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred HHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 357777788999997543 334556888999999764
No 347
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=36.02 E-value=2e+02 Score=22.67 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=25.8
Q ss_pred eeEEEEcCccc------HHHHHHHhhcCC-CeEEeccc---c---cH---HHHHh--hCceEEecCCh
Q 031484 15 LFIIWQTGVEA------FNEMESLVRNHP-RLLLTPFL---H---SM---DLAYA--AADLIVSRAGA 64 (159)
Q Consensus 15 ~~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~~~---~---~~---~~~l~--~ad~~i~~~G~ 64 (159)
-++++++|+.. .+.+.+.++..+ .+.+++-+ | .+ .+.+. .+|++|+-+|+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 91 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGG 91 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 36778888642 245555443221 34444321 2 12 23332 67999986664
No 348
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=35.07 E-value=1.6e+02 Score=20.71 Aligned_cols=104 Identities=8% Similarity=0.097 Sum_probs=53.2
Q ss_pred eeEEEEcCccc-HHHHHHHhhcCCCeEEecccc---cHHHHHh--hCceEEec---CC-----hHHHHHHHH---hCCcE
Q 031484 15 LFIIWQTGVEA-FNEMESLVRNHPRLLLTPFLH---SMDLAYA--AADLIVSR---AG-----AMTCYEILA---TGKPS 77 (159)
Q Consensus 15 ~~~~~~~G~~~-~~~l~~~~~~~~~v~~~~~~~---~~~~~l~--~ad~~i~~---~G-----~~t~~Eal~---~g~P~ 77 (159)
.+++++-.... ...++..+...+.+.+.+... +....+. ..|+++.. +| +..+.+.+. .++|+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~i 83 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSI 83 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 56665555443 445666554434444333332 3333333 46888753 12 223344332 45788
Q ss_pred EEecCCCCCCchHHHHHHHHHHcCc-eeeeccCCCChhHHHHHHHHHhc
Q 031484 78 ILIPSPNVAEGHQFKNASLMAKLAD-SRIITEDELDSITLETTIEEILG 125 (159)
Q Consensus 78 I~~p~~~~~~~~q~~~~~~~~~~~~-g~~~~~~~~~~~~l~~~l~~ll~ 125 (159)
|++... .. ........+.|. |++..+.+ ++.|.+++..+..
T Consensus 84 Ivls~~----~~-~~~~~~a~~~Ga~~yl~K~~~--~~~l~~ai~~v~~ 125 (216)
T PRK10840 84 IVLTMN----NN-PAILSAVLDLDIEGIVLKQGA--PTDLPKALAALQK 125 (216)
T ss_pred EEEEec----CC-HHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHHHC
Confidence 876432 11 112223334454 66666544 8889999888765
No 349
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=35.04 E-value=2.3e+02 Score=22.58 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=42.5
Q ss_pred HHHhhcCCeeEEEEcCcccHH----HHHHHhhcCC---CeEEeccc--ccHHHHHh-----hCceEEecCChHHHHH---
Q 031484 7 QMLMEKHNLFIIWQTGVEAFN----EMESLVRNHP---RLLLTPFL--HSMDLAYA-----AADLIVSRAGAMTCYE--- 69 (159)
Q Consensus 7 ~~~~~~~~~~~~~~~G~~~~~----~l~~~~~~~~---~v~~~~~~--~~~~~~l~-----~ad~~i~~~G~~t~~E--- 69 (159)
..+.....=++++++|+..++ .+.+.+...+ ...+.+-. .++..+.. .+|++|+-+|+-+ +.
T Consensus 23 ~~~~~~~~~~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~-iD~aK 101 (360)
T COG0371 23 EVLLKLGLSRALVVTGENTYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKT-IDTAK 101 (360)
T ss_pred HHHHhccCCceEEEEChhHHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHH-HHHHH
Confidence 334443324678899986433 3333333221 22233322 24444443 4789999766433 33
Q ss_pred --HHHhCCcEEEecCCC
Q 031484 70 --ILATGKPSILIPSPN 84 (159)
Q Consensus 70 --al~~g~P~I~~p~~~ 84 (159)
|-..|+|+|.+|..-
T Consensus 102 ~~A~~~~~pfIsvPT~A 118 (360)
T COG0371 102 AAAYRLGLPFISVPTIA 118 (360)
T ss_pred HHHHHcCCCEEEecCcc
Confidence 556899999998853
No 350
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=34.92 E-value=2.3e+02 Score=22.43 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHhhcCCeeEEEEcCccc------HHHHHHHhhcCC-CeEEec-cc--c------cHHHHHh--hCceEEecCCh
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA------FNEMESLVRNHP-RLLLTP-FL--H------SMDLAYA--AADLIVSRAGA 64 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~------~~~l~~~~~~~~-~v~~~~-~~--~------~~~~~l~--~ad~~i~~~G~ 64 (159)
+.+.++.+. -++++++|+.. .+++.+.++... .+.+++ .. | +..+.+. .+|++|+=+|+
T Consensus 17 l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGG 93 (380)
T cd08185 17 LGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGG 93 (380)
T ss_pred HHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 344455443 47888888742 244554443221 333332 22 1 2223343 68999986663
No 351
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=34.81 E-value=1.3e+02 Score=22.80 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=23.2
Q ss_pred hhCceEEecCChHHHHHHHH----hCCcEEEecC
Q 031484 53 AAADLIVSRAGAMTCYEILA----TGKPSILIPS 82 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~ 82 (159)
..+|++++-+|.+|++.+.. .++|++.+..
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~ 87 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINL 87 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeC
Confidence 57899999888888887665 4569998754
No 352
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=34.64 E-value=38 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=14.6
Q ss_pred HHHHHHHhCCcEEEecC
Q 031484 66 TCYEILATGKPSILIPS 82 (159)
Q Consensus 66 t~~Eal~~g~P~I~~p~ 82 (159)
..+|++.+|+|.|++..
T Consensus 111 AA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 111 AAFQAALLGIPAVAYSA 127 (266)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 36899999999999865
No 353
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=34.35 E-value=2.5e+02 Score=22.66 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=41.4
Q ss_pred hHHHHHhhcCCee-EEEEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhCc----eEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLF-IIWQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAAD----LIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~ad----~~i~~~G~------~t~ 67 (159)
.+.+.|..+ +++ ++-+.|.....-+..+ ...+++.++....| |.+-|+.+. ++++++|+ +.+
T Consensus 5 ~l~~~L~~~-GV~~vFg~pG~~~~~l~dal-~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl 82 (432)
T TIGR00173 5 VLVEELVRL-GVRHVVISPGSRSTPLALAA-AEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV 82 (432)
T ss_pred HHHHHHHHc-CCCEEEECCCcccHHHHHHH-HhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH
Confidence 444555553 333 3334444433322332 22346777665543 556565443 35556652 347
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.||..-++|+|++
T Consensus 83 ~~A~~~~~Pvl~i 95 (432)
T TIGR00173 83 IEASYSGVPLIVL 95 (432)
T ss_pred HHhcccCCcEEEE
Confidence 8999999999998
No 354
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=34.28 E-value=1.4e+02 Score=19.92 Aligned_cols=76 Identities=8% Similarity=0.118 Sum_probs=36.5
Q ss_pred HHHhhcC-CeeEEEEcCcccHHHHHHHhhc-CCCeEEeccc---ccHHHHHh--hCceEEecCChHHHHHHHH-hCCcEE
Q 031484 7 QMLMEKH-NLFIIWQTGVEAFNEMESLVRN-HPRLLLTPFL---HSMDLAYA--AADLIVSRAGAMTCYEILA-TGKPSI 78 (159)
Q Consensus 7 ~~~~~~~-~~~~~~~~G~~~~~~l~~~~~~-~~~v~~~~~~---~~~~~~l~--~ad~~i~~~G~~t~~Eal~-~g~P~I 78 (159)
.+++++| .++++-.+...+.+.|.++++. .|...+..-. ..+.+.+. ..+.-+. .|...+.|+.. ...-++
T Consensus 16 dVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~-~G~~~l~~~~~~~~~D~v 94 (129)
T PF02670_consen 16 DVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVL-SGPEGLEELAEEPEVDIV 94 (129)
T ss_dssp HHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEE-ESHHHHHHHHTHTT-SEE
T ss_pred HHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEE-eChHHHHHHhcCCCCCEE
Confidence 3445554 6777766666667777666543 3444433222 12333342 2333333 35555666665 445555
Q ss_pred EecCC
Q 031484 79 LIPSP 83 (159)
Q Consensus 79 ~~p~~ 83 (159)
+.-..
T Consensus 95 v~Ai~ 99 (129)
T PF02670_consen 95 VNAIV 99 (129)
T ss_dssp EE--S
T ss_pred EEeCc
Confidence 54433
No 355
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.18 E-value=1.2e+02 Score=23.28 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=33.0
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++ +.|++. =..+..++.. .-.|.+. ..++++.++.+.||++|+..|
T Consensus 143 avi~lL~~~~i~l~Gk~vv-VvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG 209 (284)
T PRK14170 143 GIIELIKSTGTQIEGKRAV-VIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATG 209 (284)
T ss_pred HHHHHHHHhCCCCCCCEEE-EECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecC
Confidence 3445666642 33454 456542 1233333322 2344443 344689999999999998766
No 356
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=33.89 E-value=75 Score=23.89 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=20.6
Q ss_pred hhCceEEec-CCh--H---HHHHHHHhCCcEEEecCC
Q 031484 53 AAADLIVSR-AGA--M---TCYEILATGKPSILIPSP 83 (159)
Q Consensus 53 ~~ad~~i~~-~G~--~---t~~Eal~~g~P~I~~p~~ 83 (159)
..+|++||+ ||. + -+.-|..+|+|+|++..|
T Consensus 196 ~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 196 YRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred cCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 378888874 332 1 233477789999999665
No 357
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.64 E-value=1.3e+02 Score=23.29 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=32.9
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|++. =..+..++.. ...|.+. ..++++.++.+.||++|+..|
T Consensus 147 vi~lL~~~~i~l~Gk~vv-ViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvG 212 (294)
T PRK14187 147 CLYLIKTITRNLSGSDAV-VIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVG 212 (294)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccC
Confidence 345666542 22454 456642 2233333322 2345444 345789999999999998777
No 358
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=33.55 E-value=2.3e+02 Score=22.01 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=20.3
Q ss_pred hCceEEecCChHHHHH-----HHHhCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYE-----ILATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~E-----al~~g~P~I~~p~~ 83 (159)
.+|++|+-+|+ ++.. +...|+|+|.+|..
T Consensus 78 ~~d~iIaiGGG-s~~D~aK~~a~~~~~p~i~iPTT 111 (339)
T cd08173 78 GADFVIGVGGG-RVIDVAKVAAYKLGIPFISVPTA 111 (339)
T ss_pred CCCEEEEeCCc-hHHHHHHHHHHhcCCCEEEecCc
Confidence 68999986663 3333 23458999999975
No 359
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=33.50 E-value=48 Score=24.77 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=24.1
Q ss_pred HHHHHh-hCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 48 MDLAYA-AADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l~-~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
+..++. .-|++|| .||+ +..+|++.+|+|.|++..
T Consensus 79 l~~l~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 79 INELMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHhccCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 334443 3599986 3453 346899999999998854
No 360
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.22 E-value=2.3e+02 Score=21.87 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|++. =..+..++.. .-.|.+.. .++++.++.+.||++|+..|
T Consensus 151 v~~ll~~~~i~l~Gk~vv-ViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG 216 (287)
T PRK14176 151 VIRALEEYGVDIEGKNAV-IVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATG 216 (287)
T ss_pred HHHHHHHcCCCCCCCEEE-EECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccC
Confidence 445666642 33454 456543 2233333322 23455544 44689999999999998666
No 361
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=32.95 E-value=2.4e+02 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=18.1
Q ss_pred CeEEecccc--cHHHHHhhCc------eEEecCCh
Q 031484 38 RLLLTPFLH--SMDLAYAAAD------LIVSRAGA 64 (159)
Q Consensus 38 ~v~~~~~~~--~~~~~l~~ad------~~i~~~G~ 64 (159)
++.+.+.++ .+..++...| ++||+||+
T Consensus 110 ~l~~~~n~dp~~~~~~l~~l~~~~Tl~iviSKSGt 144 (446)
T PRK00973 110 RVFVLDNVDPEKTASILDVIDLEKTLFNVISKSGN 144 (446)
T ss_pred eEEEeCCCCHHHHHHHHHhCCcccEEEEEEeCCCC
Confidence 466665553 4667777666 57799983
No 362
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=32.80 E-value=1.3e+02 Score=19.13 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=35.3
Q ss_pred eEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc-ccHHHHHhhCceEEecCChHHHHHH---HHhCCcEEEecC
Q 031484 16 FIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL-HSMDLAYAAADLIVSRAGAMTCYEI---LATGKPSILIPS 82 (159)
Q Consensus 16 ~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~~Ea---l~~g~P~I~~p~ 82 (159)
+++++||.+- -..++...+..+ .+.+..+. .........+|+++..+--.-..+- .+-++|+++++.
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I~~ 81 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDS 81 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhhcCCCCEEEECh
Confidence 6888999852 224444333222 34444432 2333445688999984432111221 233489999854
No 363
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.70 E-value=1.3e+02 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=10.1
Q ss_pred CCCChhHHHHHHHHHh
Q 031484 109 DELDSITLETTIEEIL 124 (159)
Q Consensus 109 ~~~~~~~l~~~l~~ll 124 (159)
+|++|+.+++.+-++-
T Consensus 103 dDFsP~~Va~qVp~L~ 118 (169)
T COG3516 103 DDFSPDAVARQVPELK 118 (169)
T ss_pred ccCCHHHHHHhhHHHH
Confidence 5666777776665543
No 364
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.69 E-value=2.3e+02 Score=21.73 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHhhc----CCeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEK----HNLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~----~~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++ .+-+++ +.|++. =..+..++.. .-.|.+.. .++++.++.+.||++|+..|
T Consensus 145 v~~lL~~~~i~l~Gk~vv-ViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvG 210 (278)
T PRK14172 145 VITLIKSLNIDIEGKEVV-VIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIG 210 (278)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCC
Confidence 44566664 233454 456642 2233333322 22454443 44689999999999998776
No 365
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.66 E-value=2.3e+02 Score=21.78 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=33.4
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEecc-cccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLTPF-LHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~~-~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|.+. =..+..++.. .-.+.+... .+++.+++..||++|+..|
T Consensus 145 i~~ll~~~~i~l~Gk~vv-VIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 145 IMEILKHADIDLEGKNAV-VIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVG 210 (286)
T ss_pred HHHHHHHcCCCCCCCEEE-EECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCC
Confidence 445666642 33454 445542 2233333322 235555543 4678999999999998776
No 366
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=32.52 E-value=1.9e+02 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=20.8
Q ss_pred HHHhhCceEEecCCh----HHHHHHHHhCCcEEEecCC
Q 031484 50 LAYAAADLIVSRAGA----MTCYEILATGKPSILIPSP 83 (159)
Q Consensus 50 ~~l~~ad~~i~~~G~----~t~~Eal~~g~P~I~~p~~ 83 (159)
..+..+|++|+..+. ..+.+.+..++|+-+++.+
T Consensus 66 ~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~ 103 (202)
T PRK06718 66 SDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDA 103 (202)
T ss_pred hhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCC
Confidence 456788998875542 2344544667777666443
No 367
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=32.41 E-value=64 Score=22.48 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=22.2
Q ss_pred HHHHHh-hCceEEe-cC--------C-hHHHHHHHHhCCcEEEe
Q 031484 48 MDLAYA-AADLIVS-RA--------G-AMTCYEILATGKPSILI 80 (159)
Q Consensus 48 ~~~~l~-~ad~~i~-~~--------G-~~t~~Eal~~g~P~I~~ 80 (159)
+...+. .+|++|- +- | ...+.++++.|+|+++.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 344443 4899773 21 2 24577899999999986
No 368
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=32.40 E-value=3e+02 Score=23.05 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=39.5
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~ 67 (159)
++.+.|... +++.++ +-|.....-+.. +...++++++.-..+ |.+-|+.+ -++++++|+ +.+
T Consensus 18 ~l~~~L~~~-GV~~vFgvpG~~~~~l~da-l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl 95 (564)
T PRK08155 18 LIVRLLERQ-GIRIVTGIPGGAILPLYDA-LSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI 95 (564)
T ss_pred HHHHHHHHc-CCCEEEeCCCcccHHHHHH-HhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH
Confidence 344455553 344333 334432222222 222245665554433 44444433 345666652 358
Q ss_pred HHHHHhCCcEEEec
Q 031484 68 YEILATGKPSILIP 81 (159)
Q Consensus 68 ~Eal~~g~P~I~~p 81 (159)
.||..-+.|+|++.
T Consensus 96 ~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 96 ADARLDSIPLVCIT 109 (564)
T ss_pred HHHHhcCCCEEEEe
Confidence 89999999999983
No 369
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=32.39 E-value=1.1e+02 Score=18.19 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=35.4
Q ss_pred eEEEEcCccc------HHHHHHHhhcCCCeEEecc---cccHHHHHhhCceEEecCChHHHHHHHHhCCcEEEec
Q 031484 16 FIIWQTGVEA------FNEMESLVRNHPRLLLTPF---LHSMDLAYAAADLIVSRAGAMTCYEILATGKPSILIP 81 (159)
Q Consensus 16 ~~~~~~G~~~------~~~l~~~~~~~~~v~~~~~---~~~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p 81 (159)
+++++||.+- ...+++.++..+ +.+... ..........+|++++.+....--..-..++|+-+++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~g-i~~~~~~~~~~~~~~~~~~~D~il~~~~i~~~~~~~~~~~pv~~I~ 74 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELG-IEVEVSAGSILEVEEIADDADLILLTPQIAYEDLKEFAGKPVPVIP 74 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTT-ECEEEEEEETTTHHHHHTT-SEEEEEESSGGHHHHHHTTSBEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhcc-CceEEEEecccccccccCCCcEEEEcCccchhhhhhhcCCeEEEEE
Confidence 5778898752 255555554332 333222 2345666777999998654221122344557877764
No 370
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=32.18 E-value=3e+02 Score=22.88 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=54.0
Q ss_pred EEEEcCccc-HHHHHHHhhcCC-CeEEecccccHHHHHhh--CceEEe---cCC--hHHHHHHHH---hCCcEEEecCCC
Q 031484 17 IIWQTGVEA-FNEMESLVRNHP-RLLLTPFLHSMDLAYAA--ADLIVS---RAG--AMTCYEILA---TGKPSILIPSPN 84 (159)
Q Consensus 17 ~~~~~G~~~-~~~l~~~~~~~~-~v~~~~~~~~~~~~l~~--ad~~i~---~~G--~~t~~Eal~---~g~P~I~~p~~~ 84 (159)
++++--... ...+...+.... ++.......+...++.. .|++++ .+| +..+++.+. .+.|||++.-.
T Consensus 7 iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~- 85 (464)
T COG2204 7 ILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH- 85 (464)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCC-
Confidence 444433322 333444443322 34444443455555654 477775 222 344555444 36999998532
Q ss_pred CCCchHHHHHHHHHHcCc-eeeeccCCCChhHHHHHHHHHhcCHHH
Q 031484 85 VAEGHQFKNASLMAKLAD-SRIITEDELDSITLETTIEEILGNEAL 129 (159)
Q Consensus 85 ~~~~~q~~~~~~~~~~~~-g~~~~~~~~~~~~l~~~l~~ll~~~~~ 129 (159)
+.-....+.+ +.|+ -++. .+++++++...+.+.+.....
T Consensus 86 ---g~i~~AV~A~-k~GA~Dfl~--KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 86 ---GDIDTAVEAL-RLGAFDFLE--KPFDLDRLLAIVERALELREL 125 (464)
T ss_pred ---CCHHHHHHHH-hcCcceeee--CCCCHHHHHHHHHHHHHHhhh
Confidence 2211122333 3343 3344 445599999999998875443
No 371
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.14 E-value=1.3e+02 Score=23.05 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-++ ++.|++. =..+..++.. .-.|.+.. .++++.++.+.||++|+..|
T Consensus 146 vi~ll~~y~i~l~Gk~v-vViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvG 211 (284)
T PRK14177 146 MVLLLKEYGIDVTGKNA-VVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVG 211 (284)
T ss_pred HHHHHHHhCCCCCCCEE-EEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCC
Confidence 345566542 2245 4456642 2233333322 23454443 45688999999999998766
No 372
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.13 E-value=1.4e+02 Score=23.18 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=33.6
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-++ ++.|++. =..+..++.. .-.|.+. ..++++.++.+.||++|+..|
T Consensus 144 aii~lL~~~~i~l~Gk~v-vVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvG 210 (297)
T PRK14186 144 GVMRLLRSQQIDIAGKKA-VVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAG 210 (297)
T ss_pred HHHHHHHHhCCCCCCCEE-EEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccC
Confidence 3445666642 3345 4556642 2233333322 2344444 445689999999999998777
No 373
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.12 E-value=65 Score=25.21 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=23.9
Q ss_pred hCceEEecCChHH---HHHHHHhCCcEEEecC
Q 031484 54 AADLIVSRAGAMT---CYEILATGKPSILIPS 82 (159)
Q Consensus 54 ~ad~~i~~~G~~t---~~Eal~~g~P~I~~p~ 82 (159)
.-|++++.+|..+ ++-+..+|+|+++...
T Consensus 91 kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 91 KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred CCCEEEecCchhhHHHHHHHHHcCCCEEEECC
Confidence 5789999988664 7889999999998744
No 374
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=31.98 E-value=56 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.5
Q ss_pred HHHHhhCceEEecCChHHHHHHHHh----CCcEEEecC
Q 031484 49 DLAYAAADLIVSRAGAMTCYEILAT----GKPSILIPS 82 (159)
Q Consensus 49 ~~~l~~ad~~i~~~G~~t~~Eal~~----g~P~I~~p~ 82 (159)
...-..+|++|+-+|.+|++.++.. ++|++-++.
T Consensus 71 ~~~~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp HHHCCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 3446899999999999998887763 679998865
No 375
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=31.92 E-value=38 Score=24.72 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 031484 128 ALMAEMSERALK 139 (159)
Q Consensus 128 ~~~~~~~~~~~~ 139 (159)
..++-+..|+.+
T Consensus 258 ~~~~i~~~NA~r 269 (273)
T PF04909_consen 258 EREKILYDNARR 269 (273)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHhHhHHH
Confidence 333444444443
No 376
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.59 E-value=92 Score=22.46 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=41.0
Q ss_pred hhHHHHHhhcCCeeEEEEcCcc-cHHHHHHHhhcCCCeEEeccc-ccHHHHHhhCceEEecCChHH---HHHHHHhCCcE
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVE-AFNEMESLVRNHPRLLLTPFL-HSMDLAYAAADLIVSRAGAMT---CYEILATGKPS 77 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t---~~Eal~~g~P~ 77 (159)
+.++++.+++|+ +++-.|.. +.+..++.++.--++.+.+.. +++.++-...++... +|..| +.+|+.+|..+
T Consensus 48 ~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~i-PG~~TptEi~~A~~~G~~~ 124 (196)
T PF01081_consen 48 EAIEALRKEFPD--LLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYI-PGVMTPTEIMQALEAGADI 124 (196)
T ss_dssp HHHHHHHHHHTT--SEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEE-EEESSHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHCCC--CeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCccc-CCcCCHHHHHHHHHCCCCE
Confidence 344556666776 33455554 345555544333456666544 467777777777666 34333 44467788888
Q ss_pred EEe
Q 031484 78 ILI 80 (159)
Q Consensus 78 I~~ 80 (159)
+=+
T Consensus 125 vK~ 127 (196)
T PF01081_consen 125 VKL 127 (196)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 377
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.48 E-value=1.4e+02 Score=22.98 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=33.6
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++ +.|++. =..+..++.. .-.|.+. .+++++.++.+.||++|+..|
T Consensus 144 aii~lL~~y~i~l~Gk~vv-ViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvG 210 (282)
T PRK14180 144 GIMTMLREYGIKTEGAYAV-VVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG 210 (282)
T ss_pred HHHHHHHHhCCCCCCCEEE-EECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccC
Confidence 3455666642 33454 456542 2233333322 2234443 445789999999999998776
No 378
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.43 E-value=1.4e+02 Score=23.06 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-++ ++.|++. =..+..++.. .-.|.+.. .++++.++.+.||++|+..|
T Consensus 146 v~~lL~~y~i~l~GK~v-vViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvG 211 (288)
T PRK14171 146 CLAVIKKYEPNLTGKNV-VIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIG 211 (288)
T ss_pred HHHHHHHhCCCCCCCEE-EEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccC
Confidence 345566541 2245 4456642 2233333322 23444443 45689999999999998766
No 379
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=31.38 E-value=1.9e+02 Score=20.41 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHhhCceEEecCChHHH--------------HHHHHhCCcEEEecC
Q 031484 50 LAYAAADLIVSRAGAMTC--------------YEILATGKPSILIPS 82 (159)
Q Consensus 50 ~~l~~ad~~i~~~G~~t~--------------~Eal~~g~P~I~~p~ 82 (159)
+.+..+|.+|..+|..+. -++...|+|++.+-.
T Consensus 34 ~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~ 80 (189)
T PRK13525 34 EDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCA 80 (189)
T ss_pred hHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECH
Confidence 456789999987775433 245667999998854
No 380
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=31.21 E-value=1.5e+02 Score=19.26 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=47.1
Q ss_pred CeEEecccc--cHHHHHhhCceEEecCCh---HHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCC
Q 031484 38 RLLLTPFLH--SMDLAYAAADLIVSRAGA---MTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELD 112 (159)
Q Consensus 38 ~v~~~~~~~--~~~~~l~~ad~~i~~~G~---~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~ 112 (159)
.+.+.+..+ ++.+.+..+|++++..++ -.+++.+ -++.+|.....+. + ....+.+.+.|..+.-.++ ..
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~---d-~id~~~a~~~gI~V~n~~g-~~ 93 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGV---D-NIDLEAAKERGIPVTNVPG-YN 93 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSC---T-TB-HHHHHHTTSEEEE-TT-TT
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEccccc---C-cccHHHHhhCeEEEEEeCC-cC
Confidence 577776443 577889999999987664 3345555 7899998765432 2 1245667777766543322 33
Q ss_pred hhHHHHHH
Q 031484 113 SITLETTI 120 (159)
Q Consensus 113 ~~~l~~~l 120 (159)
++..++..
T Consensus 94 ~~aVAE~a 101 (133)
T PF00389_consen 94 AEAVAEHA 101 (133)
T ss_dssp HHHHHHHH
T ss_pred Ccchhccc
Confidence 56666655
No 381
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=31.08 E-value=92 Score=22.22 Aligned_cols=48 Identities=10% Similarity=0.283 Sum_probs=25.4
Q ss_pred hhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEE-ecCC
Q 031484 3 NLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIV-SRAG 63 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i-~~~G 63 (159)
+++..+.+.+|+.++.+++|......+. .|. +..+++..+++++ .+.|
T Consensus 89 ~tl~~l~~~~p~~~~~fiiG~D~l~~l~------------~W~-~~~~i~~~~~~iv~~R~g 137 (203)
T PRK00071 89 DTLRELRARYPDVELVFIIGADALAQLP------------RWK-RWEEILDLVHFVVVPRPG 137 (203)
T ss_pred HHHHHHHHHCCCCcEEEEEcHHHhhhcc------------ccc-CHHHHHHhCcEEEEeCCC
Confidence 3444444556666666666644322211 132 4567778888855 4545
No 382
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=30.74 E-value=52 Score=24.71 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=24.7
Q ss_pred HHHHHh-hCceEEe-------------cCCh-HHHHHHHHhCCcEEEecC
Q 031484 48 MDLAYA-AADLIVS-------------RAGA-MTCYEILATGKPSILIPS 82 (159)
Q Consensus 48 ~~~~l~-~ad~~i~-------------~~G~-~t~~Eal~~g~P~I~~p~ 82 (159)
+..++. .-|++|| .||+ +..+|++.+|+|.|++..
T Consensus 75 l~~l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 75 LNGLLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHhhccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 334443 5799986 3443 346899999999999865
No 383
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.69 E-value=3.3e+02 Score=22.90 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=40.0
Q ss_pred hHHHHHhhcCCeeEE-EEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFII-WQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~ 67 (159)
.+.+.|..+ +++.+ -+-|.....-+..+.+ .+++.++....+ |.+-|+.+ -++++++|+ +.+
T Consensus 9 ~l~~~L~~~-GV~~vFg~pG~~~~~l~~al~~-~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i 86 (574)
T PRK06882 9 MVVQSLRDE-GVEYVFGYPGGSVLDIYDAIHT-LGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI 86 (574)
T ss_pred HHHHHHHHc-CCCEEEeCCCcchHHHHHHHhh-cCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH
Confidence 444555553 33332 3444433332233222 235666554432 55555533 245566662 347
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.||..-++|+|++
T Consensus 87 ~~A~~~~~Pvlvi 99 (574)
T PRK06882 87 ATAYTDSVPLVIL 99 (574)
T ss_pred HHHhhcCCCEEEE
Confidence 8999999999987
No 384
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=30.51 E-value=1.3e+02 Score=21.52 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=24.1
Q ss_pred HHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceee
Q 031484 69 EILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 69 Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~ 105 (159)
-++..++|+++.|...+-..-...|...+.+.|..++
T Consensus 110 ~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi 146 (185)
T PRK06029 110 VMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIM 146 (185)
T ss_pred HHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEE
Confidence 3677899999999753321223447777777776554
No 385
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.35 E-value=45 Score=19.00 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCcEEEe
Q 031484 65 MTCYEILATGKPSILI 80 (159)
Q Consensus 65 ~t~~Eal~~g~P~I~~ 80 (159)
.-+.|++..|.|+++.
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4578999999999986
No 386
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=30.16 E-value=1.9e+02 Score=19.96 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=22.3
Q ss_pred cHHHHHhh-----CceEEecCC---hHHHHHHHHhCCcEEEecCC
Q 031484 47 SMDLAYAA-----ADLIVSRAG---AMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 47 ~~~~~l~~-----ad~~i~~~G---~~t~~Eal~~g~P~I~~p~~ 83 (159)
.+.++++. ++++|+-+| ...-.=+...-+|||.+|..
T Consensus 43 ~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~ 87 (150)
T PF00731_consen 43 RLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLPVIGVPVS 87 (150)
T ss_dssp HHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-EEEEEE-
T ss_pred HHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCCEEEeecC
Confidence 46666643 588997665 22223355669999999875
No 387
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.14 E-value=1.6e+02 Score=22.70 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=33.5
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++ +.|++. =..+..++.. ...|.+. ..++++.++.+.||++|+..|
T Consensus 141 avi~lL~~~~i~l~Gk~vv-ViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvG 207 (287)
T PRK14173 141 GVVRLLKHYGIPLAGKEVV-VVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVG 207 (287)
T ss_pred HHHHHHHHcCCCCCCCEEE-EECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecC
Confidence 3455666642 33454 456642 1233333322 2344443 455689999999999998776
No 388
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.87 E-value=2.9e+02 Score=22.20 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=32.1
Q ss_pred HHHHHhhcCCeeEEEEcCcc-----cHHHHHHHhhcCC-CeEEeccc-c--cHH------HHH--hhCceEEecCCh
Q 031484 5 YYQMLMEKHNLFIIWQTGVE-----AFNEMESLVRNHP-RLLLTPFL-H--SMD------LAY--AAADLIVSRAGA 64 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~-----~~~~l~~~~~~~~-~v~~~~~~-~--~~~------~~l--~~ad~~i~~~G~ 64 (159)
+.+......--+.++++++. ..+++.+.++... .+.+++-+ + ... +.+ ..+|.+|+-+|+
T Consensus 20 l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGG 96 (377)
T COG1454 20 LGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGG 96 (377)
T ss_pred HHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 33344433324677888885 3455555554333 34555544 2 222 333 378999997664
No 389
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.86 E-value=1.6e+02 Score=18.97 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=41.5
Q ss_pred eEEEEcCccc-----HHHHHHHhhc-CCCeEEeccc-ccHHHHHhhCceEEecCC----hHHHHH-HHHhCCcEEEecC
Q 031484 16 FIIWQTGVEA-----FNEMESLVRN-HPRLLLTPFL-HSMDLAYAAADLIVSRAG----AMTCYE-ILATGKPSILIPS 82 (159)
Q Consensus 16 ~~~~~~G~~~-----~~~l~~~~~~-~~~v~~~~~~-~~~~~~l~~ad~~i~~~G----~~t~~E-al~~g~P~I~~p~ 82 (159)
+++++|..+- -..+++.++. ...+.+.-+. .+..+.+..+|+++--+. -..+-| +--.|+|+-++|.
T Consensus 3 ~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 3 KILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEEeCH
Confidence 5677887751 2344444433 2356666666 378899999999987333 122333 3336789999864
No 390
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=29.66 E-value=94 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=12.6
Q ss_pred cHHHHHhhCceEEe-cCC
Q 031484 47 SMDLAYAAADLIVS-RAG 63 (159)
Q Consensus 47 ~~~~~l~~ad~~i~-~~G 63 (159)
+..+++..|.++|. +.|
T Consensus 141 ~~~~L~~~~~lvV~~R~g 158 (243)
T PRK06973 141 DWRRLFDYAHLCAATRPG 158 (243)
T ss_pred cHHHHHHhCCEEEEECCC
Confidence 56788899998764 555
No 391
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.64 E-value=2.1e+02 Score=20.27 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=32.8
Q ss_pred cCcccHHHHHHHhhcCC-CeEEecccccHHHHHhhCceEEecCChH--H-------------HHHHHHhCCcEEEecC
Q 031484 21 TGVEAFNEMESLVRNHP-RLLLTPFLHSMDLAYAAADLIVSRAGAM--T-------------CYEILATGKPSILIPS 82 (159)
Q Consensus 21 ~G~~~~~~l~~~~~~~~-~v~~~~~~~~~~~~l~~ad~~i~~~G~~--t-------------~~Eal~~g~P~I~~p~ 82 (159)
.|..+...+.++++... .+.+.... +-+..+|.+|..+|+. + +.++...|+|++-+-.
T Consensus 7 ~g~gn~~~~~~~l~~~g~~v~~~~~~----~~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~ 80 (199)
T PRK13181 7 YGAGNLRSVANALKRLGVEAVVSSDP----EEIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICL 80 (199)
T ss_pred CCCChHHHHHHHHHHCCCcEEEEcCh----HHhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECH
Confidence 45555555655554322 45554332 2356789988755321 1 3344467999998855
No 392
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=29.57 E-value=1.6e+02 Score=22.79 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=32.1
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-++ ++.|+.. =..+..++.. .-.|.+. ..++++.++.+.||++|+..|
T Consensus 154 vi~lL~~~~i~l~Gk~v-vVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvG 219 (299)
T PLN02516 154 CLELLSRSGIPIKGKKA-VVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAG 219 (299)
T ss_pred HHHHHHHhCCCCCCCEE-EEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCC
Confidence 345555542 2345 4456642 2233333322 2244444 445688999999999998666
No 393
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=29.40 E-value=2.1e+02 Score=20.26 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=52.2
Q ss_pred HHHHhhc--CCeeEEEEcCcccHHHHHHHhhcCC-Ce---EEecccc-----cHHHHHhhCc--eEEecCC--hHHHHHH
Q 031484 6 YQMLMEK--HNLFIIWQTGVEAFNEMESLVRNHP-RL---LLTPFLH-----SMDLAYAAAD--LIVSRAG--AMTCYEI 70 (159)
Q Consensus 6 ~~~~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~-~v---~~~~~~~-----~~~~~l~~ad--~~i~~~G--~~t~~Ea 70 (159)
.+.+..+ .+.++++..|......+.+.+...+ ++ .++...+ .....+...+ +++..|. ...+.+.
T Consensus 112 ~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~iiftS~~~v~~f~~~ 191 (239)
T cd06578 112 LELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTSPSTVRNLLEL 191 (239)
T ss_pred HHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCcEEEEeCHHHHHHHHHH
Confidence 3344443 6778888888876566666554321 22 2222221 2345555443 4554343 3334443
Q ss_pred H-------HhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHH
Q 031484 71 L-------ATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLET 118 (159)
Q Consensus 71 l-------~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 118 (159)
+ ..+++++++ ++ ..++.+.+.|.-..+..+..+.+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~ai-------g~--~t~~~l~~~g~~~~~~~~~~~~~~l~~ 237 (239)
T cd06578 192 LGKEGRALLKNVKIAAI-------GP--RTAEALRELGLKVVIVAESPTLEALLE 237 (239)
T ss_pred HhhhhhhhhcCCeEEEE-------CH--HHHHHHHHcCCCceeeecCCChHHHHh
Confidence 3 346777766 22 245567776764444344434555554
No 394
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=28.95 E-value=1.6e+02 Score=20.51 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=15.8
Q ss_pred CCCChhHHHHHHHHHhcCHHHHHHHHHH
Q 031484 109 DELDSITLETTIEEILGNEALMAEMSER 136 (159)
Q Consensus 109 ~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 136 (159)
+|++|+.+++.+-.+-.--+.|++...-
T Consensus 97 ~DF~Pd~v~~qVp~L~~LlelR~~L~~L 124 (157)
T PF05591_consen 97 DDFHPDAVAEQVPELRKLLELREQLRDL 124 (157)
T ss_pred ccCCHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6677777777766554433444444433
No 395
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=28.84 E-value=1e+02 Score=25.71 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=48.5
Q ss_pred cHHHHHhhCceEEecCC----hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-cCceeee-cc----CCCChhHH
Q 031484 47 SMDLAYAAADLIVSRAG----AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK-LADSRII-TE----DELDSITL 116 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G----~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~-~~----~~~~~~~l 116 (159)
+..++...|.+-+.+|- +-|..|+-.+|+|.|.+...++ +. + -.+.+++ ..+|+.+ .. -+.+.++|
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGF--Gc-f-Meehi~d~~ayGIYIvDRRfks~deSv~qL 568 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGF--GC-F-MEEHIEDPQAYGIYIVDRRFKSPDESVQQL 568 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccch--hh-h-HHHHhcCchhceEEEEecccCChhhHHHHH
Confidence 57788999999887652 2356899999999999877643 21 0 1112222 2456553 22 22245556
Q ss_pred HHHHHHHhcCHHHHHHHHH
Q 031484 117 ETTIEEILGNEALMAEMSE 135 (159)
Q Consensus 117 ~~~l~~ll~~~~~~~~~~~ 135 (159)
+..+.+... .++|+++.+
T Consensus 569 ~~~m~~F~~-qsRRQRIiq 586 (692)
T KOG3742|consen 569 ASFMYEFCK-QSRRQRIIQ 586 (692)
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 666655543 334444443
No 396
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.69 E-value=1.8e+02 Score=22.42 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=33.4
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhcC-----CCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRNH-----PRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~~-----~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++ +.|++. =..+..++... ..|.+.. .++++.++.+.||++|+..|
T Consensus 139 avi~lL~~~~i~l~Gk~vv-ViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG 209 (287)
T PRK14181 139 GIIELLKYYEIPLHGRHVA-IVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIG 209 (287)
T ss_pred HHHHHHHHhCCCCCCCEEE-EECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccC
Confidence 3445666642 33454 456642 22333333222 2444443 45689999999999998766
No 397
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=28.69 E-value=2.9e+02 Score=21.68 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=25.9
Q ss_pred eeEEEEcCccc-----HHHHHHHhhcCCCeEEeccc-c--------cHHHHHh--h--CceEEecCCh
Q 031484 15 LFIIWQTGVEA-----FNEMESLVRNHPRLLLTPFL-H--------SMDLAYA--A--ADLIVSRAGA 64 (159)
Q Consensus 15 ~~~~~~~G~~~-----~~~l~~~~~~~~~v~~~~~~-~--------~~~~~l~--~--ad~~i~~~G~ 64 (159)
-++++++|+.. .+.+.+.++. ..+.+++.+ + +..+.+. . +|++|.=+|+
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~-~~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGG 90 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGG-RLAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGG 90 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhcc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 36778888742 3455544432 234544333 1 2223443 2 8999986663
No 398
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=28.39 E-value=85 Score=23.69 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred HHHHHhhCceEEecCC------hHHHHH--HHHhCCcEEEe
Q 031484 48 MDLAYAAADLIVSRAG------AMTCYE--ILATGKPSILI 80 (159)
Q Consensus 48 ~~~~l~~ad~~i~~~G------~~t~~E--al~~g~P~I~~ 80 (159)
+....+.+|++|+.+| ..| .| |-++|+|.+.-
T Consensus 54 l~~a~~r~D~vI~tGGLGPT~DDiT-~e~vAka~g~~lv~~ 93 (255)
T COG1058 54 LREASERADVVITTGGLGPTHDDLT-AEAVAKALGRPLVLD 93 (255)
T ss_pred HHHHHhCCCEEEECCCcCCCccHhH-HHHHHHHhCCCcccC
Confidence 5566678999999887 244 56 55689998865
No 399
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=28.27 E-value=1.5e+02 Score=23.43 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|+.. =..+..++.. .-.|.+. ..++++.++.+.||++|+..|
T Consensus 201 vi~LL~~~~i~l~GK~vv-VIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvG 266 (345)
T PLN02897 201 CVELLIRSGVEIAGKNAV-VIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAG 266 (345)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccC
Confidence 345566542 33454 456642 1223333322 2234433 455788999999999998776
No 400
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=28.10 E-value=3e+02 Score=22.05 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=39.8
Q ss_pred CCeeEEEEcCcccH----HHHHHHhhcCCCeEEec------------ccccHHHHHhhCceEEecCC--------hHHHH
Q 031484 13 HNLFIIWQTGVEAF----NEMESLVRNHPRLLLTP------------FLHSMDLAYAAADLIVSRAG--------AMTCY 68 (159)
Q Consensus 13 ~~~~~~~~~G~~~~----~~l~~~~~~~~~v~~~~------------~~~~~~~~l~~ad~~i~~~G--------~~t~~ 68 (159)
..++++-+||.... .-+++++ +++|++.. +++...++-..-+++++.-| .+|+.
T Consensus 32 ~p~~iMeVCGtHt~aI~r~Gir~LL--p~~IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~SL~ 109 (369)
T TIGR00075 32 KPLKIMEVCGGHTHTIMKYGLRDLL--PENLELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPGSGGSLL 109 (369)
T ss_pred CCeEEEEeCCCchHHHHHhChHhhC--CCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCCCCCCHH
Confidence 36899999998642 2333332 45776653 22333333335678876443 45788
Q ss_pred HHHHhCCcEEEe
Q 031484 69 EILATGKPSILI 80 (159)
Q Consensus 69 Eal~~g~P~I~~ 80 (159)
|+-+.|.=+=++
T Consensus 110 ~ara~GadVriV 121 (369)
T TIGR00075 110 QARAEGADVRIV 121 (369)
T ss_pred HHHhCCCCEEEE
Confidence 888888766555
No 401
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=28.08 E-value=3.5e+02 Score=22.50 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=27.4
Q ss_pred CCeEEecccc-----cHHHHHhhCc---eEEecCCh------HHHHHHHHhCCcEEEec
Q 031484 37 PRLLLTPFLH-----SMDLAYAAAD---LIVSRAGA------MTCYEILATGKPSILIP 81 (159)
Q Consensus 37 ~~v~~~~~~~-----~~~~~l~~ad---~~i~~~G~------~t~~Eal~~g~P~I~~p 81 (159)
+++.+..... .|.+-|+.+. ++++++|+ +.+.+|..-++|+|++.
T Consensus 38 ~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~ 96 (539)
T TIGR03393 38 PDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAINGIAGSYAEHLPVIHIV 96 (539)
T ss_pred CCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhhHHHHHhhccCCEEEEE
Confidence 4565554443 2455554332 34445553 35889999999999874
No 402
>PRK10637 cysG siroheme synthase; Provisional
Probab=28.03 E-value=3.4e+02 Score=22.24 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=20.1
Q ss_pred HHHhhCceEEecCCh-----HHHHHHHHhCCcEEEecCC
Q 031484 50 LAYAAADLIVSRAGA-----MTCYEILATGKPSILIPSP 83 (159)
Q Consensus 50 ~~l~~ad~~i~~~G~-----~t~~Eal~~g~P~I~~p~~ 83 (159)
..+..++++|...+. ....++-..|+++-+++.+
T Consensus 68 ~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~ 106 (457)
T PRK10637 68 SLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAP 106 (457)
T ss_pred HHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCc
Confidence 456788888875542 1122344567887777543
No 403
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.00 E-value=2.8e+02 Score=21.31 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=33.4
Q ss_pred hHHHHHhhc----CCeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEK----HNLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~----~~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++ .+-+++ +.|++. =..+..++.. ...|.+. ..++++.++.+.||++|+..|
T Consensus 144 av~~lL~~~~i~l~Gk~vv-ViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG 210 (284)
T PRK14190 144 GILELLKEYNIDISGKHVV-VVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVG 210 (284)
T ss_pred HHHHHHHHcCCCCCCCEEE-EECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecC
Confidence 345666664 233454 456642 2233333322 2344444 344678899999999998666
No 404
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=27.99 E-value=2.5e+02 Score=20.74 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=28.9
Q ss_pred CCCeEEeccc-----ccHHHHHhhCceEEecCCh-HH---HHH-HHHhCCcEEEe
Q 031484 36 HPRLLLTPFL-----HSMDLAYAAADLIVSRAGA-MT---CYE-ILATGKPSILI 80 (159)
Q Consensus 36 ~~~v~~~~~~-----~~~~~~l~~ad~~i~~~G~-~t---~~E-al~~g~P~I~~ 80 (159)
.+++.+..+. .+..+++..+|++|..... .+ +-+ +...++|+|..
T Consensus 91 np~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 91 NPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred CCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4666655443 2467789999999964442 11 222 56789999975
No 405
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.85 E-value=2e+02 Score=22.25 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhcC-----CCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRNH-----PRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~~-----~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|++. =..+..++... -.+.+. ..++++.++.+.||++|+..|
T Consensus 144 v~~lL~~~~i~l~GK~vv-ViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvG 213 (293)
T PRK14185 144 ILELLKRYHIETSGKKCV-VLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALG 213 (293)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccC
Confidence 445666542 33454 456642 23333333222 234443 445789999999999998776
No 406
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.73 E-value=1.8e+02 Score=23.31 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=32.4
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|+.. =..+..++.. ...|.+.. .++++.++.+.||++|+..|
T Consensus 218 vielL~~y~i~l~GK~vv-VIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvG 283 (364)
T PLN02616 218 CIELLHRYNVEIKGKRAV-VIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVG 283 (364)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCC
Confidence 345565542 22454 456642 1223333322 23454443 44689999999999998776
No 407
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=27.67 E-value=3.7e+02 Score=22.63 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=41.4
Q ss_pred hHHHHHhhcCCeeEE-EEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhh----CceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFII-WQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAA----ADLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~----ad~~i~~~G~------~t~ 67 (159)
.+.+.|... +++.+ -+.|.....-++.+.+...+++++....+ +.+-++. --++++++|+ +.+
T Consensus 4 ~l~~~L~~~-GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i 82 (575)
T TIGR02720 4 AVLKVLEAW-GVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL 82 (575)
T ss_pred HHHHHHHHc-CCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH
Confidence 344555553 33333 34454433333333322235766665543 4444443 3345666652 358
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.+|...++|+|++
T Consensus 83 ~~A~~~~~Pvl~I 95 (575)
T TIGR02720 83 YDAKEDHVPVLAL 95 (575)
T ss_pred HHHhhcCCCEEEE
Confidence 8999999999998
No 408
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=27.63 E-value=3.7e+02 Score=22.59 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=39.6
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~ 67 (159)
.+.+.|..+ +++.++ +-|.....-++.+.+ .+++.+..-..+ +.+-|+.+ -++++++|+ +.+
T Consensus 15 ~i~~~L~~~-Gv~~vFgipG~~~~~l~dal~~-~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl 92 (566)
T PRK07282 15 LVLETLRDL-GVDTIFGYPGGAVLPLYDAIYN-FEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI 92 (566)
T ss_pred HHHHHHHHc-CCCEEEecCCcchHHHHHHHhh-cCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH
Confidence 344455553 333333 444433333333222 245666654443 45555433 345666662 347
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.+|.+-+.|+|++
T Consensus 93 a~A~~~~~Pvl~i 105 (566)
T PRK07282 93 ADAMSDSVPLLVF 105 (566)
T ss_pred HHHhhcCCCEEEE
Confidence 8999999999998
No 409
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=27.54 E-value=97 Score=25.47 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=28.5
Q ss_pred cHHHHHhhCceEEecCCh----HHHHHHHHhC-CcEEEecC
Q 031484 47 SMDLAYAAADLIVSRAGA----MTCYEILATG-KPSILIPS 82 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~----~t~~Eal~~g-~P~I~~p~ 82 (159)
+..+.|+.|..+++.+|. ..+.|++..| +|||+.+.
T Consensus 336 ~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~ 376 (464)
T KOG1021|consen 336 NYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDG 376 (464)
T ss_pred hHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCC
Confidence 467899999999999983 3477877765 79999865
No 410
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.32 E-value=1.6e+02 Score=18.38 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHh--hCceEE-ecCC---hHHHHHHHHhCCcEEE
Q 031484 6 YQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYA--AADLIV-SRAG---AMTCYEILATGKPSIL 79 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~--~ad~~i-~~~G---~~t~~Eal~~g~P~I~ 79 (159)
..+....++.+++.++.+.. +..++..+ ..++..+ .+..+++. ..|+++ +.+. ...+.+++..|+|+++
T Consensus 17 ~~~~~~~~~~~v~~v~d~~~-~~~~~~~~-~~~~~~~---~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 17 RALLRSSPDFEVVAVCDPDP-ERAEAFAE-KYGIPVY---TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp HHHHHTTTTEEEEEEECSSH-HHHHHHHH-HTTSEEE---SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcCCCcEEEEEEeCCH-HHHHHHHH-Hhcccch---hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 34555558888887777752 22222111 1234422 34667776 577765 3221 3456788999998887
Q ss_pred e-cC
Q 031484 80 I-PS 82 (159)
Q Consensus 80 ~-p~ 82 (159)
= |.
T Consensus 92 EKP~ 95 (120)
T PF01408_consen 92 EKPL 95 (120)
T ss_dssp ESSS
T ss_pred EcCC
Confidence 3 44
No 411
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=27.29 E-value=2e+02 Score=21.37 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=31.4
Q ss_pred CCCeEEecc-c---ccHHHHHhhCceEEe--cCC-----hHHHHHHHHhCCcEEEecC
Q 031484 36 HPRLLLTPF-L---HSMDLAYAAADLIVS--RAG-----AMTCYEILATGKPSILIPS 82 (159)
Q Consensus 36 ~~~v~~~~~-~---~~~~~~l~~ad~~i~--~~G-----~~t~~Eal~~g~P~I~~p~ 82 (159)
.|+|.++|- . ..+.+.+..||++|. .|+ ..-+.++...|.|++.+..
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~ 207 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNL 207 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECC
Confidence 367888776 2 246677899999775 232 2233456778999998843
No 412
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=26.84 E-value=1.2e+02 Score=21.86 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=11.7
Q ss_pred HHHHHHhCCcEEEecC
Q 031484 67 CYEILATGKPSILIPS 82 (159)
Q Consensus 67 ~~Eal~~g~P~I~~p~ 82 (159)
..|++..|+|+|+++.
T Consensus 4 ai~al~~G~~Viv~D~ 19 (194)
T PF00926_consen 4 AIEALKAGKPVIVVDD 19 (194)
T ss_dssp HHHHHHTTS-EEEECS
T ss_pred HHHHHHCCCeEEEEeC
Confidence 5688888888888854
No 413
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=26.83 E-value=3.8e+02 Score=22.41 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=40.0
Q ss_pred hHHHHHhhcCCee-EEEEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhh----CceEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLF-IIWQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAA----ADLIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~----ad~~i~~~G~------~t~ 67 (159)
.+.+.|... +++ ++-+-|.....-++.+ ...+++.++....+ +.+-|+. --++++++|+ +.+
T Consensus 6 ~l~~~L~~~-Gv~~vFgvpG~~~~~l~~~l-~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i 83 (558)
T TIGR00118 6 AIIESLKDE-GVKTVFGYPGGAILPIYDAL-YNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI 83 (558)
T ss_pred HHHHHHHHc-CCCEEEeCCCcchHHHHHHh-hccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH
Confidence 344445443 333 3334454333333332 22356766655543 4444432 2255666652 458
Q ss_pred HHHHHhCCcEEEe
Q 031484 68 YEILATGKPSILI 80 (159)
Q Consensus 68 ~Eal~~g~P~I~~ 80 (159)
.||..-++|+|++
T Consensus 84 ~~A~~~~~Pvl~i 96 (558)
T TIGR00118 84 ATAYMDSIPMVVF 96 (558)
T ss_pred HHHHhcCCCEEEE
Confidence 8999999999998
No 414
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=26.63 E-value=73 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=11.4
Q ss_pred hcCCeeEEEEcCcc
Q 031484 11 EKHNLFIIWQTGVE 24 (159)
Q Consensus 11 ~~~~~~~~~~~G~~ 24 (159)
.+|+++|+++||+.
T Consensus 64 sNpnIRflilcG~E 77 (176)
T PF04208_consen 64 SNPNIRFLILCGSE 77 (176)
T ss_pred cCCCceEEEEecCc
Confidence 47889998999874
No 415
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=26.47 E-value=2.3e+02 Score=19.77 Aligned_cols=44 Identities=9% Similarity=0.065 Sum_probs=21.7
Q ss_pred hHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEe
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVS 60 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~ 60 (159)
++..+.+.+|+.++.++.|......+... .+..+++..+.+++.
T Consensus 88 tl~~l~~~~p~~~~~~iiG~D~l~~l~~W-------------~~~~~i~~~~~l~~~ 131 (174)
T PRK08887 88 LLTRLQELYPEADLTFVIGPDNFLKFAKF-------------YKADEITQRWTVMAC 131 (174)
T ss_pred HHHHHHHHCCCCeEEEEEccchHHHHHHh-------------CCHHHHHhhCeEEEe
Confidence 34444444555555555555443333322 123455666776665
No 416
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.22 E-value=3e+02 Score=21.11 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=33.9
Q ss_pred hHHHHHhhc----CCeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEK----HNLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~----~~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++ .+-++ ++.|++. =..+..++.. .-.|.+. ..++++.++.+.||++|+..|
T Consensus 143 avi~lL~~y~i~l~Gk~v-vVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvG 209 (282)
T PRK14166 143 GVMKLLKAYEIDLEGKDA-VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAG 209 (282)
T ss_pred HHHHHHHHhCCCCCCCEE-EEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCC
Confidence 344566664 23345 4456642 2333333322 2234433 455789999999999998776
No 417
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.18 E-value=2.2e+02 Score=21.92 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=32.8
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-----CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-----HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-----~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-++ ++.|++. =..+..++.. ...+.+.. ..+++.++.+.||++|+..|
T Consensus 144 v~~lL~~~~i~l~Gk~v-vViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG 213 (286)
T PRK14184 144 VMTLLERYGLSPAGKKA-VVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIG 213 (286)
T ss_pred HHHHHHHhCCCCCCCEE-EEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecC
Confidence 445666642 2245 4456642 2334334332 12444443 33578899999999998665
No 418
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=26.04 E-value=2.4e+02 Score=19.91 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=34.0
Q ss_pred EEEcCc-ccHHHHHHHhhcCC-CeEEecccccHHHHHhhCceEEecCChH---------------HHHHHHHhCCcEEEe
Q 031484 18 IWQTGV-EAFNEMESLVRNHP-RLLLTPFLHSMDLAYAAADLIVSRAGAM---------------TCYEILATGKPSILI 80 (159)
Q Consensus 18 ~~~~G~-~~~~~l~~~~~~~~-~v~~~~~~~~~~~~l~~ad~~i~~~G~~---------------t~~Eal~~g~P~I~~ 80 (159)
++..|. .+...++++++... .+.++....+ ...+|.++-.+|.. .+.+....|+|++.+
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 344553 46666766554322 4555544444 56778888766531 133344468999887
Q ss_pred c
Q 031484 81 P 81 (159)
Q Consensus 81 p 81 (159)
-
T Consensus 79 C 79 (194)
T cd01750 79 C 79 (194)
T ss_pred C
Confidence 4
No 419
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=26.03 E-value=1.4e+02 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=24.1
Q ss_pred ccHHHHHhhCceEEecCCh--HHHHHHHHhCCcEEEecC
Q 031484 46 HSMDLAYAAADLIVSRAGA--MTCYEILATGKPSILIPS 82 (159)
Q Consensus 46 ~~~~~~l~~ad~~i~~~G~--~t~~Eal~~g~P~I~~p~ 82 (159)
+++.+.+..+|++|+..|. -++..-..-+.|.++++.
T Consensus 234 ~~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~~~~~~iDL 272 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNVLEYIVTCKYVGDKPRVFIDI 272 (414)
T ss_pred HHHHHHhccCCEEEECcCCCCeeECHHHhCCCCeEEEEe
Confidence 3567788999999975542 122233345789998855
No 420
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.94 E-value=1.6e+02 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=21.0
Q ss_pred Cce-EEecCC--hHHHHHHHHhCCcEEEecCC
Q 031484 55 ADL-IVSRAG--AMTCYEILATGKPSILIPSP 83 (159)
Q Consensus 55 ad~-~i~~~G--~~t~~Eal~~g~P~I~~p~~ 83 (159)
=|+ +|..+. ...+.||--+|+|+|.+-..
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 445 445454 57789999999999987443
No 421
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=25.85 E-value=2.4e+02 Score=21.18 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=30.3
Q ss_pred CCCeEEeccc-c-----cHHHHHhhCceEEec--CC-----hHHHHHHHHhCCcEEEecC
Q 031484 36 HPRLLLTPFL-H-----SMDLAYAAADLIVSR--AG-----AMTCYEILATGKPSILIPS 82 (159)
Q Consensus 36 ~~~v~~~~~~-~-----~~~~~l~~ad~~i~~--~G-----~~t~~Eal~~g~P~I~~p~ 82 (159)
.|+|.++|-. + ...+.++.||++|.- |+ ..-+.++...|.|++.+..
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~ 239 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNI 239 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcC
Confidence 4678887643 3 355777899998752 32 1223346678999999843
No 422
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.73 E-value=1.1e+02 Score=19.26 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=28.2
Q ss_pred eeEEEEcCccc------HHHHHHHhhcCCCe--EEe-cccccHHHHHhhCceEEec
Q 031484 15 LFIIWQTGVEA------FNEMESLVRNHPRL--LLT-PFLHSMDLAYAAADLIVSR 61 (159)
Q Consensus 15 ~~~~~~~G~~~------~~~l~~~~~~~~~v--~~~-~~~~~~~~~l~~ad~~i~~ 61 (159)
.+++.+||.+- ...+++.++.. ++ .+- ..+++.......+|++++.
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~-gi~~~~~~~~v~~~~~~~~~aDiiv~s 56 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKEL-GIDVDVEQCAVDEIKALTDGADIIVTS 56 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHc-CCCceeeeEEecccccCCCcccEEEEe
Confidence 47888999852 34556655432 22 111 2234667778899999983
No 423
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.39 E-value=3.4e+02 Score=21.34 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=30.2
Q ss_pred HHHHHhhcCCeeEEEEcCccc--HHHHHHHhhcCC-CeEEec-ccc--------cHHHHHh--hCceEEecCCh
Q 031484 5 YYQMLMEKHNLFIIWQTGVEA--FNEMESLVRNHP-RLLLTP-FLH--------SMDLAYA--AADLIVSRAGA 64 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~~~--~~~l~~~~~~~~-~v~~~~-~~~--------~~~~~l~--~ad~~i~~~G~ 64 (159)
+.+.+.....-++++++|+.. .+.+++.++... .+.+++ ..+ +..+.+. .+|++|+=+|+
T Consensus 14 l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 87 (367)
T cd08182 14 LPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGG 87 (367)
T ss_pred HHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 344455443336888888753 244444443222 233332 221 2334443 57999986664
No 424
>PRK00861 putative lipid kinase; Reviewed
Probab=25.32 E-value=3e+02 Score=20.80 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=21.6
Q ss_pred hCceEEecCChHHHHHHHH----hCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEILA----TGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~----~g~P~I~~p~~ 83 (159)
..|++|.-+|.+|+-|++. .+.|+-++|..
T Consensus 57 ~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~G 90 (300)
T PRK00861 57 GAELIIASGGDGTLSAVAGALIGTDIPLGIIPRG 90 (300)
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCCcEEEEcCC
Confidence 4588888888888777543 45677778875
No 425
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.23 E-value=2.5e+02 Score=19.82 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHh--CCcEEEecCCC---CCCchHHHHHHHHHHcCceee
Q 031484 71 LAT--GKPSILIPSPN---VAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 71 l~~--g~P~I~~p~~~---~~~~~q~~~~~~~~~~~~g~~ 105 (159)
++. ++|+++.|... +...-...|...+.+.|.-++
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi 147 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEI 147 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEE
Confidence 456 89999998631 000112346666776665433
No 426
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=25.18 E-value=55 Score=21.16 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=31.2
Q ss_pred CeEEeccc-ccHHHHHhhCceEEecCChHHHHH---HHHhCCcEEEe
Q 031484 38 RLLLTPFL-HSMDLAYAAADLIVSRAGAMTCYE---ILATGKPSILI 80 (159)
Q Consensus 38 ~v~~~~~~-~~~~~~l~~ad~~i~~~G~~t~~E---al~~g~P~I~~ 80 (159)
.|.+...+ .++-..+..+-.+|+.-|+.|-.- .+..|+|+|+-
T Consensus 34 ~iLv~~std~d~v~~~eKa~aiItee~glTshaAVvgl~LgvPvIvG 80 (111)
T COG3848 34 VILVTPSTDADFVPALEKAAAIITEEGGLTSHAAVVGLELGVPVIVG 80 (111)
T ss_pred cEEEeccCChhhHHHHHhhheeEeccCCccccceeeEeecCCcEEEE
Confidence 55555544 478899999999998776555322 45689999985
No 427
>PRK00536 speE spermidine synthase; Provisional
Probab=25.03 E-value=2.3e+02 Score=21.40 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=15.7
Q ss_pred cCCeeEEEEcCcccHHHHHHHhhcCCCeEEecc
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPF 44 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~ 44 (159)
+|+.+=|++.|+++-.-+++.++...+|.+.+-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeI 102 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQA 102 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEEC
Confidence 455554444455443444444444345555543
No 428
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=24.91 E-value=2.7e+02 Score=20.11 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHhhCceEEe-----cCChH--------HHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChh
Q 031484 48 MDLAYAAADLIVS-----RAGAM--------TCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSI 114 (159)
Q Consensus 48 ~~~~l~~ad~~i~-----~~G~~--------t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~ 114 (159)
+.+-+..+|+++- -+|.. .+=.....|+++|++-... +..-.....+...+.+.|..+.-..++.+
T Consensus 91 ~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~-P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 91 FKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP-PSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp HHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS--TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred hhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC-CccccccChhhhhhHhhcchhhcCCCCHH
Confidence 3455778999873 12321 1222445899999863211 01001112334445566766655554456
Q ss_pred HHHHHHHHHh
Q 031484 115 TLETTIEEIL 124 (159)
Q Consensus 115 ~l~~~l~~ll 124 (159)
...+.+.+..
T Consensus 170 ~r~~il~~~a 179 (219)
T PF00308_consen 170 DRRRILQKKA 179 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 429
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=24.86 E-value=1.1e+02 Score=21.56 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=9.5
Q ss_pred HHHHHhhCceEEe-cCC
Q 031484 48 MDLAYAAADLIVS-RAG 63 (159)
Q Consensus 48 ~~~~l~~ad~~i~-~~G 63 (159)
..+++..++++|. +.|
T Consensus 115 ~~~i~~~~~~iv~~R~g 131 (192)
T cd02165 115 WEELLSLVHLVVAPRPG 131 (192)
T ss_pred HHHHHHhCcEEEEeCCC
Confidence 4566777777653 444
No 430
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=24.82 E-value=1.7e+02 Score=21.09 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=28.8
Q ss_pred hhhHHHHH-hhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEe-cCCh
Q 031484 2 LNLYYQML-MEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVS-RAGA 64 (159)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~-~~G~ 64 (159)
++++..+. +.+|+.++.++.|......+-+ | .+..+++..+.+++. +.|+
T Consensus 87 ~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~------------W-~~~~ell~~~~~vv~~Rp~~ 138 (197)
T COG1057 87 IDTLEHLRQEYGPDVELYFIIGADNLASLPK------------W-YDWDELLKLVTFVVAPRPGY 138 (197)
T ss_pred HHHHHHHHHHhCCCCcEEEEEehHHhhhhhh------------h-hhHHHHHHhCCEEEEecCCc
Confidence 34555566 4466767777777543332211 2 246677888888775 4454
No 431
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.65 E-value=2.4e+02 Score=21.69 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=32.5
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc---CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN---HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~---~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|++. =..+..++.. .-.|.+.. .++++.++.+.||++|+..|
T Consensus 145 v~~ll~~~~i~l~Gk~vv-ViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvG 212 (284)
T PRK14193 145 IVHLLRRYDVELAGAHVV-VIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAG 212 (284)
T ss_pred HHHHHHHhCCCCCCCEEE-EECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecC
Confidence 445566542 33454 456542 2233333322 12344443 44689999999999998776
No 432
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=24.50 E-value=3.6e+02 Score=21.36 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=41.1
Q ss_pred hHHHHHhhcCCeeEEEEcCccc-HHHHHHHhhcCCCeE--Eeccc--ccHHHHHh--hCceEEecCC---hHHHHHHHHh
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEA-FNEMESLVRNHPRLL--LTPFL--HSMDLAYA--AADLIVSRAG---AMTCYEILAT 73 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~-~~~l~~~~~~~~~v~--~~~~~--~~~~~~l~--~ad~~i~~~G---~~t~~Eal~~ 73 (159)
...++.+.+|++++++.+.... .+...+.. .+.+. ..++. ..+..++. .-|++++..+ ++.+..+-..
T Consensus 69 l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~--~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~ 146 (425)
T PRK05749 69 LIRALRKRYPDLPILVTTMTPTGSERAQALF--GDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPNLIAELKRR 146 (425)
T ss_pred HHHHHHHhCCCCcEEEeCCCccHHHHHHHhc--CCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHC
Confidence 3445566678989877655432 22222221 12332 23322 13445554 4588876533 4555666778
Q ss_pred CCcEEEe
Q 031484 74 GKPSILI 80 (159)
Q Consensus 74 g~P~I~~ 80 (159)
|+|++++
T Consensus 147 ~ip~vl~ 153 (425)
T PRK05749 147 GIPLVLA 153 (425)
T ss_pred CCCEEEE
Confidence 9999986
No 433
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.44 E-value=2.6e+02 Score=19.79 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=30.3
Q ss_pred EEEcCcccHHHHHHHhhcC-CCeEEecccccHHHHHhhCceEEecCChHHHH----------------HH-HHhCCcEEE
Q 031484 18 IWQTGVEAFNEMESLVRNH-PRLLLTPFLHSMDLAYAAADLIVSRAGAMTCY----------------EI-LATGKPSIL 79 (159)
Q Consensus 18 ~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~~~~~~l~~ad~~i~~~G~~t~~----------------Ea-l~~g~P~I~ 79 (159)
++=.|..+...+.+.++.. ..+.+..... -+..+|.+|-+++ ++.. +. +..|+|++-
T Consensus 4 iid~g~~n~~~v~~~l~~~g~~~~~~~~~~----~l~~~d~lilPG~-g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlG 78 (201)
T PRK13152 4 LIDYKAGNLNSVAKAFEKIGAINFIAKNPK----DLQKADKLLLPGV-GSFKEAMKNLKELGFIEALKEQVLVQKKPILG 78 (201)
T ss_pred EEECCCCcHHHHHHHHHHCCCeEEEECCHH----HHcCCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHhCCCcEEE
Confidence 3445555544444444322 2344433322 2466888887443 2211 11 346999998
Q ss_pred ecC
Q 031484 80 IPS 82 (159)
Q Consensus 80 ~p~ 82 (159)
+-.
T Consensus 79 iC~ 81 (201)
T PRK13152 79 ICL 81 (201)
T ss_pred ECH
Confidence 865
No 434
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=24.33 E-value=1.1e+02 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=23.9
Q ss_pred hCceEEecCChHHHHHHHHhCCcEEEecC
Q 031484 54 AADLIVSRAGAMTCYEILATGKPSILIPS 82 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~~g~P~I~~p~ 82 (159)
..|++|+.....+..-+-..|+|+|.+..
T Consensus 94 ~pDlVIsD~~~~~~~aa~~~giP~i~i~~ 122 (318)
T PF13528_consen 94 RPDLVISDFYPLAALAARRAGIPVIVISN 122 (318)
T ss_pred CCCEEEEcChHHHHHHHHhcCCCEEEEEe
Confidence 78999998777777778889999998743
No 435
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=24.27 E-value=3.3e+02 Score=20.80 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=38.5
Q ss_pred HHHHHhhCceEE--ec-CChH-HHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCCh-----hHHHH
Q 031484 48 MDLAYAAADLIV--SR-AGAM-TCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDS-----ITLET 118 (159)
Q Consensus 48 ~~~~l~~ad~~i--~~-~G~~-t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~-----~~l~~ 118 (159)
.......+|++| |+ .++. .+-.++.+|+|.++....+ . .++....+.+.+. .++++.++ ++. ..|++
T Consensus 63 ~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf-~-~e~~~~l~~~a~~-v~vv~a~N-fSiGvnll~~l~~ 138 (266)
T COG0289 63 LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF-T-EEQLEKLREAAEK-VPVVIAPN-FSLGVNLLFKLAE 138 (266)
T ss_pred hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCC-C-HHHHHHHHHHHhh-CCEEEecc-chHHHHHHHHHHH
Confidence 445567889998 33 3333 3344778898888765432 2 3444333333333 44444332 121 34555
Q ss_pred HHHHHhc
Q 031484 119 TIEEILG 125 (159)
Q Consensus 119 ~l~~ll~ 125 (159)
...+++.
T Consensus 139 ~aak~l~ 145 (266)
T COG0289 139 QAAKVLD 145 (266)
T ss_pred HHHHhcC
Confidence 5556665
No 436
>PRK13337 putative lipid kinase; Reviewed
Probab=24.19 E-value=3.2e+02 Score=20.74 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=21.3
Q ss_pred hCceEEecCChHHHHHHHH--h----CCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEILA--T----GKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~--~----g~P~I~~p~~ 83 (159)
..|++|.-+|.+|+-|++. + ..|+-++|..
T Consensus 57 ~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 57 KFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred CCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 3588998899888877664 2 3466678865
No 437
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=24.03 E-value=2.7e+02 Score=19.80 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=52.5
Q ss_pred cCCeeEEEEcCcccHHHHHHHhhcCC----CeEEecc-----cccHHHHH--hhCceEEecCC--hHHHHHH------HH
Q 031484 12 KHNLFIIWQTGVEAFNEMESLVRNHP----RLLLTPF-----LHSMDLAY--AAADLIVSRAG--AMTCYEI------LA 72 (159)
Q Consensus 12 ~~~~~~~~~~G~~~~~~l~~~~~~~~----~v~~~~~-----~~~~~~~l--~~ad~~i~~~G--~~t~~Ea------l~ 72 (159)
..+-++++.+|....+.+.+.++..+ .+.++.. .+++.+.+ ...|+++..|. ...+.+. ..
T Consensus 115 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~ 194 (231)
T PF02602_consen 115 LRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALL 194 (231)
T ss_dssp CTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHH
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhh
Confidence 44567889999865566655553222 2333333 12455555 35688776554 2334444 34
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHH
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLE 117 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~ 117 (159)
.+++++++ ++ ..++.+.+.|.-..+..+..+.+.+.
T Consensus 195 ~~~~~~~i-------g~--~ta~~l~~~g~~~~~va~~~~~~~lv 230 (231)
T PF02602_consen 195 KRVPIVAI-------GP--RTAKALRELGFKVDIVAERPTIEALV 230 (231)
T ss_dssp TTSEEEES-------SH--HHHHHHHHTT-SCSEEESSSSHHHHH
T ss_pred hCCEEEEE-------CH--HHHHHHHHcCCCceEECCCCChhHhh
Confidence 46666665 22 25667888887664434444455553
No 438
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.93 E-value=2.2e+02 Score=22.00 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=19.2
Q ss_pred CeEEe-cccccHHHHHhhCceEEecCC
Q 031484 38 RLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 38 ~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.|.+. ..++++.++.+.||++|+..|
T Consensus 191 tVtv~hs~T~~l~~~~~~ADIvVsAvG 217 (297)
T PRK14168 191 TVTIVHTRSKNLARHCQRADILIVAAG 217 (297)
T ss_pred EEEEecCCCcCHHHHHhhCCEEEEecC
Confidence 34444 344688899999999998666
No 439
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=23.89 E-value=2.4e+02 Score=19.11 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred cHHHHHhhCceEEecCC---hHHHHHHHHhC---CcEEEe
Q 031484 47 SMDLAYAAADLIVSRAG---AMTCYEILATG---KPSILI 80 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G---~~t~~Eal~~g---~P~I~~ 80 (159)
...+++..||+++..+- -+|+-+.+... .++++.
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEE
T ss_pred HHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEE
Confidence 57889999999986442 24554544443 466665
No 440
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=23.69 E-value=2.1e+02 Score=22.86 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=19.2
Q ss_pred HhhCceEEecCCh---HHHHHHHHhCCcEEEe
Q 031484 52 YAAADLIVSRAGA---MTCYEILATGKPSILI 80 (159)
Q Consensus 52 l~~ad~~i~~~G~---~t~~Eal~~g~P~I~~ 80 (159)
++.+|++++..+. ..+...+..|+++|-.
T Consensus 102 ~~~~DvVf~Alp~~~s~~i~~~~~~g~~VIDl 133 (381)
T PLN02968 102 FSDVDAVFCCLPHGTTQEIIKALPKDLKIVDL 133 (381)
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHhCCCEEEEc
Confidence 4889999875553 3455556677777654
No 441
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.65 E-value=2.2e+02 Score=21.79 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEec-ccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLTP-FLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~~-~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-++ ++.|++. -..+..++.. ...+.+.. ..+++.+..+.||++|+..|
T Consensus 139 v~~ll~~~~i~l~Gk~V-~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avg 204 (279)
T PRK14178 139 IMTLLHEYKISIAGKRA-VVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAG 204 (279)
T ss_pred HHHHHHHcCCCCCCCEE-EEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCC
Confidence 445666642 3345 4556642 2333333322 23454443 34578899999999998766
No 442
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.48 E-value=2.5e+02 Score=19.14 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHH-cCceeeeccCCCChhHHHHHHHHH
Q 031484 65 MTCYEILATGKPSILIPSPNVAEGHQFKNASLMAK-LADSRIITEDELDSITLETTIEEI 123 (159)
Q Consensus 65 ~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~-~~~g~~~~~~~~~~~~l~~~l~~l 123 (159)
-.+-.....|+|+|+..... +-....+.+.. .++-...+..+++.+.=.+...++
T Consensus 67 evi~~I~~~G~PviVAtDV~----p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~ 122 (138)
T PF04312_consen 67 EVIEWISEYGKPVIVATDVS----PPPETVKKIARSFNAVLYTPERDLSVEEKQELAREY 122 (138)
T ss_pred HHHHHHHHcCCEEEEEecCC----CCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhh
Confidence 34455778999999864431 11223333432 355555667777766654444444
No 443
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=23.23 E-value=2.7e+02 Score=19.43 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=19.0
Q ss_pred cHHHHHh--hCceEEecCChHHHHHHH----HhCCcEEEecC
Q 031484 47 SMDLAYA--AADLIVSRAGAMTCYEIL----ATGKPSILIPS 82 (159)
Q Consensus 47 ~~~~~l~--~ad~~i~~~G~~t~~Eal----~~g~P~I~~p~ 82 (159)
++..+|. ..|...-+-|.-..-++. ..+.|.+.+-.
T Consensus 82 ~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~ 123 (157)
T KOG2501|consen 82 SLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILK 123 (157)
T ss_pred HHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEec
Confidence 4666666 366655544533333322 25677776633
No 444
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=23.19 E-value=2.2e+02 Score=20.92 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCCeEEeccc-c-----cHHHHHhhCceEEe--cCC----hHHHHHHHHhCCcEEEecC
Q 031484 36 HPRLLLTPFL-H-----SMDLAYAAADLIVS--RAG----AMTCYEILATGKPSILIPS 82 (159)
Q Consensus 36 ~~~v~~~~~~-~-----~~~~~l~~ad~~i~--~~G----~~t~~Eal~~g~P~I~~p~ 82 (159)
.|+|.++|-. | ...+.++.||++|. .|+ ...+.+.+..|.|++++..
T Consensus 151 rP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~ 209 (235)
T cd01408 151 KPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINR 209 (235)
T ss_pred cCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeC
Confidence 3578887743 3 23456778999874 332 2345566778999998843
No 445
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=23.14 E-value=3e+02 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCeEEecccc--cHHHHHhhCc--------eEEecCC
Q 031484 37 PRLLLTPFLH--SMDLAYAAAD--------LIVSRAG 63 (159)
Q Consensus 37 ~~v~~~~~~~--~~~~~l~~ad--------~~i~~~G 63 (159)
.+++|.+.++ .+.+++...+ +++|+||
T Consensus 143 ~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSG 179 (528)
T PRK14096 143 LNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSG 179 (528)
T ss_pred CcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 4677887774 5778887665 4668888
No 446
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.08 E-value=2.6e+02 Score=20.16 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=28.6
Q ss_pred CCCeEEeccc-c-----cHHHHHhhCceEEe--cCC-----hHHHHHHHHhCCcEEEecC
Q 031484 36 HPRLLLTPFL-H-----SMDLAYAAADLIVS--RAG-----AMTCYEILATGKPSILIPS 82 (159)
Q Consensus 36 ~~~v~~~~~~-~-----~~~~~l~~ad~~i~--~~G-----~~t~~Eal~~g~P~I~~p~ 82 (159)
.|+|.++|-. + ...+.++.||++|. .|+ ..-+.++...|.|++.+..
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECC
Confidence 4678887753 3 34466678999875 232 1223345567888888743
No 447
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=22.76 E-value=2.5e+02 Score=19.44 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=38.5
Q ss_pred cCcccHHHHHHHhhcCC-CeEEecccccHHHH---HhhCceEEecCChHH----------HHHHHHhCCcEEEecCCCCC
Q 031484 21 TGVEAFNEMESLVRNHP-RLLLTPFLHSMDLA---YAAADLIVSRAGAMT----------CYEILATGKPSILIPSPNVA 86 (159)
Q Consensus 21 ~G~~~~~~l~~~~~~~~-~v~~~~~~~~~~~~---l~~ad~~i~~~G~~t----------~~Eal~~g~P~I~~p~~~~~ 86 (159)
.|......+.+.++... ++.+..+....... +...|.+|..+|.++ +-++...++|++-+-.
T Consensus 5 ~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~---- 80 (192)
T PF00117_consen 5 NGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICL---- 80 (192)
T ss_dssp SSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETH----
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEee----
Confidence 34444555555554433 67777665433333 677888776565322 2334456999998865
Q ss_pred CchHHH
Q 031484 87 EGHQFK 92 (159)
Q Consensus 87 ~~~q~~ 92 (159)
++|..
T Consensus 81 -G~Q~l 85 (192)
T PF00117_consen 81 -GHQIL 85 (192)
T ss_dssp -HHHHH
T ss_pred -hhhhh
Confidence 56553
No 448
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.75 E-value=3.7e+02 Score=20.85 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=33.5
Q ss_pred hHHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhcC-----CCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 4 LYYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRNH-----PRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~~-----~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
+.-++++++. +-+++ +.|++. =..+..++... --|.+. ..++++.++.+.||++|+..|
T Consensus 143 avi~lL~~~~i~l~Gk~vv-ViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvG 213 (297)
T PRK14167 143 GIQKLLAAAGVDTEGADVV-VVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAG 213 (297)
T ss_pred HHHHHHHHhCCCCCCCEEE-EECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccC
Confidence 3456666642 33454 456642 22333333221 234443 344688999999999998776
No 449
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=22.73 E-value=3.8e+02 Score=21.06 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.0
Q ss_pred hCceEEecCChHHHHH
Q 031484 54 AADLIVSRAGAMTCYE 69 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~E 69 (159)
.+|++|.=+|+ +.+.
T Consensus 81 ~~D~IIaiGGG-S~iD 95 (347)
T cd08184 81 LPCAIVGIGGG-STLD 95 (347)
T ss_pred CCCEEEEeCCc-HHHH
Confidence 57999986664 3344
No 450
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.60 E-value=4.8e+02 Score=22.09 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=39.5
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhCc----eEEecCCh------HHH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAAD----LIVSRAGA------MTC 67 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~ad----~~i~~~G~------~t~ 67 (159)
.+.+.|.. .+++.++ +-|.....-+..+.+ .++++++....+ +.+-|+.+. ++++++|+ +.+
T Consensus 26 ~l~~~L~~-~GV~~vFgvpG~~~~~l~dal~~-~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl 103 (587)
T PRK06965 26 ILMKALAA-EGVEFIWGYPGGAVLYIYDELYK-QDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI 103 (587)
T ss_pred HHHHHHHH-cCCCEEEecCCcchHHHHHHHhh-cCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH
Confidence 44455555 3344333 444433222233222 235655544432 555554332 45666652 347
Q ss_pred HHHHHhCCcEEEec
Q 031484 68 YEILATGKPSILIP 81 (159)
Q Consensus 68 ~Eal~~g~P~I~~p 81 (159)
.+|..-++|+|++.
T Consensus 104 ~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 104 ATAYMDSIPMVVIS 117 (587)
T ss_pred HHHhhcCCCEEEEe
Confidence 89999999999983
No 451
>PRK14053 methyltransferase; Provisional
Probab=22.56 E-value=95 Score=22.26 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=12.0
Q ss_pred hcCCeeEEEEcCcc
Q 031484 11 EKHNLFIIWQTGVE 24 (159)
Q Consensus 11 ~~~~~~~~~~~G~~ 24 (159)
.+|+++|+++||.+
T Consensus 61 sNpNIRflilcG~E 74 (194)
T PRK14053 61 SNSNIRYVLLCGGE 74 (194)
T ss_pred cCCCceEEEEecCc
Confidence 47999999999985
No 452
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=22.16 E-value=3.3e+02 Score=20.06 Aligned_cols=102 Identities=9% Similarity=0.041 Sum_probs=56.1
Q ss_pred CCeeEEEEcCcccHHHHHHHhhcCC----CeEEeccc--c----cHHHHHh--hCceEEecCCh--HHHHHHH------H
Q 031484 13 HNLFIIWQTGVEAFNEMESLVRNHP----RLLLTPFL--H----SMDLAYA--AADLIVSRAGA--MTCYEIL------A 72 (159)
Q Consensus 13 ~~~~~~~~~G~~~~~~l~~~~~~~~----~v~~~~~~--~----~~~~~l~--~ad~~i~~~G~--~t~~Eal------~ 72 (159)
++-++++..|....+.+.+.++..+ .+.++... + .+.+.+. ..|+++..|+. ..+.+.+ .
T Consensus 129 ~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~~~ 208 (255)
T PRK05752 129 PDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGADWPEL 208 (255)
T ss_pred CCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhChhHHHh
Confidence 4557888889876666666554322 23333322 1 2233343 36777766652 2223322 3
Q ss_pred hCCcEEEecCCCCCCchHHHHHHHHHHcCceeeeccCCCChhHHHHHHHHH
Q 031484 73 TGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITEDELDSITLETTIEEI 123 (159)
Q Consensus 73 ~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~l 123 (159)
.++|++++ ++ ..++.+.+.|...++..+..+.+.|.+++.+.
T Consensus 209 ~~~~~~~i-------g~--~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~~ 250 (255)
T PRK05752 209 ARLPLFVP-------SP--RVAEQARAAGAQTVVDCRGASAAALLAALRRQ 250 (255)
T ss_pred cCceEEEe-------CH--HHHHHHHHcCCCceeeCCCCChHHHHHHHHhc
Confidence 46777765 22 24566777777555444455678888877653
No 453
>PRK11914 diacylglycerol kinase; Reviewed
Probab=22.07 E-value=1.1e+02 Score=23.20 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=22.5
Q ss_pred hCceEEecCChHHHHHHH----HhCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEIL----ATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal----~~g~P~I~~p~~ 83 (159)
.+|++|.-+|.+|+-|++ ..++|+-++|..
T Consensus 64 ~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 64 GTDALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred CCCEEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 458888888988877765 346787788864
No 454
>PRK13059 putative lipid kinase; Reviewed
Probab=22.03 E-value=96 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred hCceEEecCChHHHHHHH---H---hCCcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEIL---A---TGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal---~---~g~P~I~~p~~ 83 (159)
.+|++|.-+|.+|+-|.+ . .++|+-++|..
T Consensus 56 ~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 56 SYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 458899888888877653 2 35788888875
No 455
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=21.98 E-value=4.4e+02 Score=21.47 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=41.4
Q ss_pred hhHHHHHhhc-CCeeEEEEcCcccHHHHHHHhhcCCCe-EEecccc-cHHHHHhhCceEEecCChHHHHHHHHhCCcEEE
Q 031484 3 NLYYQMLMEK-HNLFIIWQTGVEAFNEMESLVRNHPRL-LLTPFLH-SMDLAYAAADLIVSRAGAMTCYEILATGKPSIL 79 (159)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~G~~~~~~l~~~~~~~~~v-~~~~~~~-~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~ 79 (159)
+...+.|+.. -++-+.+.+|.+- ..+++++++ ..+ -+++... ++.+.+-.- +..+|+.-+--|.-.|+|.|+
T Consensus 201 ~~~~~~Le~~G~Ev~VFHAtG~GG-~aME~Li~~-G~~~~VlDlTttEl~d~l~GG---v~sagp~Rl~AA~~~GIP~Vv 275 (403)
T PF06792_consen 201 DAIRERLEEEGYEVLVFHATGTGG-RAMERLIRE-GQFDGVLDLTTTELADELFGG---VLSAGPDRLEAAARAGIPQVV 275 (403)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCch-HHHHHHHHc-CCcEEEEECcHHHHHHHHhCC---CCCCCchHHHHHHHcCCCEEE
Confidence 3445556654 3444556777652 233444432 333 2455442 444444322 445788776667789999999
Q ss_pred ecC
Q 031484 80 IPS 82 (159)
Q Consensus 80 ~p~ 82 (159)
+|-
T Consensus 276 s~G 278 (403)
T PF06792_consen 276 SPG 278 (403)
T ss_pred ecC
Confidence 864
No 456
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=21.97 E-value=3.9e+02 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=23.7
Q ss_pred cHHHHHhhCceEEecCC-----hHHHHHHHHhCCcEEEe
Q 031484 47 SMDLAYAAADLIVSRAG-----AMTCYEILATGKPSILI 80 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G-----~~t~~Eal~~g~P~I~~ 80 (159)
++.+++..+|+++.-.. ...-.-+...++|+|-.
T Consensus 101 ~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 101 RLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA 139 (307)
T ss_pred HHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 36788999999996333 22234577789999953
No 457
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=21.85 E-value=1.2e+02 Score=21.11 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=4.1
Q ss_pred CCCeEEec
Q 031484 36 HPRLLLTP 43 (159)
Q Consensus 36 ~~~v~~~~ 43 (159)
.+++.|+-
T Consensus 89 ~~~~~Fv~ 96 (161)
T COG3265 89 NPGLRFVY 96 (161)
T ss_pred CCCeEEEE
Confidence 35665553
No 458
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=21.82 E-value=1.6e+02 Score=16.33 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=14.3
Q ss_pred CCChhHHHHHHHHHhcCHHHH
Q 031484 110 ELDSITLETTIEEILGNEALM 130 (159)
Q Consensus 110 ~~~~~~l~~~l~~ll~~~~~~ 130 (159)
..+++++...+.+++..+...
T Consensus 21 ~is~ERi~~El~kil~~~~~~ 41 (64)
T PF12627_consen 21 KISKERIREELEKILSSPNPS 41 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTTHH
T ss_pred cCCHHHHHHHHHHHHcCCCHH
Confidence 345788888888888765433
No 459
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=21.75 E-value=2.1e+02 Score=17.76 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=36.5
Q ss_pred CeEEecc-cccHHHHHhhCceEEecCC-hHHHHHHHHhCCcEEEecCCCCCCchHHHHHHHHHHcCceeeecc
Q 031484 38 RLLLTPF-LHSMDLAYAAADLIVSRAG-AMTCYEILATGKPSILIPSPNVAEGHQFKNASLMAKLADSRIITE 108 (159)
Q Consensus 38 ~v~~~~~-~~~~~~~l~~ad~~i~~~G-~~t~~Eal~~g~P~I~~p~~~~~~~~q~~~~~~~~~~~~g~~~~~ 108 (159)
++.+-.- .+++.+.+..-+++|+.+. ...+.-++..+++.|++.... .....-.+...+.+..+...+
T Consensus 23 ~v~v~a~~~~~~~~~~~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~---~~~~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 23 KVVVGAMSLSDFLEYLKPGDLVITPGDREDIQLAAIEAGIACIILTGGL---EPSEEVLELAKELGIPVISTP 92 (105)
T ss_dssp EEEE-SS-HHHHHHCHHTTEEEEEETT-HHHHHHHCCTTECEEEEETT-------HHHHHHHHHHT-EEEE-S
T ss_pred eEEEEECCHHHHHhhcCCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCC---CCCHHHHHHHHHCCCEEEEEC
Confidence 3444433 2456666777778887444 556667777888888765432 112223445566676655544
No 460
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=21.74 E-value=3.4e+02 Score=20.07 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCeEEeccc-----ccHHHHHhhCceEEecCChHH----HHH-HHHhCCcEEEe
Q 031484 36 HPRLLLTPFL-----HSMDLAYAAADLIVSRAGAMT----CYE-ILATGKPSILI 80 (159)
Q Consensus 36 ~~~v~~~~~~-----~~~~~~l~~ad~~i~~~G~~t----~~E-al~~g~P~I~~ 80 (159)
.+.+.+..+. ++..++++.+|++|....... +.+ +...++|+|..
T Consensus 99 np~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 99 NPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 4566555433 245678899999996544211 223 45689999975
No 461
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=21.69 E-value=4.1e+02 Score=21.66 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=43.4
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhcCCCeEEecccccHHHHHhhCceEEec-CC--hHHHHHHHHhCCcEE
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRNHPRLLLTPFLHSMDLAYAAADLIVSR-AG--AMTCYEILATGKPSI 78 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~v~~~~~~~~~~~~l~~ad~~i~~-~G--~~t~~Eal~~g~P~I 78 (159)
+.+|..++..+|+.+++. +|...--++-+..+..+.+.+.+.++++..+ ..++-.++- +| ..-.+..++-..|.+
T Consensus 212 l~D~a~l~aa~P~AtivA-GsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i-~~~~~~l~iGAgvt~t~a~~~la~~~P~l 289 (493)
T COG4630 212 LADFADLLAAHPGATIVA-GSTDVGLWVTKQMRDLNPVIFVGHLAELRRI-EVSTGGLEIGAGVTYTQAYRALAGRYPAL 289 (493)
T ss_pred HHHHHHHHhhCCCCEEEe-cCcchhhHHHHHHhhcCCeEEecchhhhhee-eecCCcEEEccCccHHHHHHHHHhhCchH
Confidence 457888999999988853 3333211222223445678888888877443 333334432 23 122445667777766
Q ss_pred E
Q 031484 79 L 79 (159)
Q Consensus 79 ~ 79 (159)
.
T Consensus 290 ~ 290 (493)
T COG4630 290 G 290 (493)
T ss_pred H
Confidence 3
No 462
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=21.65 E-value=98 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.2
Q ss_pred hcCCeeEEEEcCcc---c--HHHHHHHhh
Q 031484 11 EKHNLFIIWQTGVE---A--FNEMESLVR 34 (159)
Q Consensus 11 ~~~~~~~~~~~G~~---~--~~~l~~~~~ 34 (159)
.+|+++|+++||.+ + =..|.++.+
T Consensus 68 sNpNIRflilcG~Ev~GH~tGqsl~aL~~ 96 (225)
T PRK00964 68 SNPNIRFLILCGSEVQGHITGQSLKALHE 96 (225)
T ss_pred cCCCceEEEEecCccCCccccHHHHHHHH
Confidence 47999999999985 2 245666543
No 463
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=21.63 E-value=1.9e+02 Score=17.04 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhh
Q 031484 112 DSITLETTIEEILG-NEALMAEMSERALKAAKPGASADIAQHILSLVE 158 (159)
Q Consensus 112 ~~~~l~~~l~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
+++.-.+.+.+++. ++...+++.+....-....-..+-++.|...++
T Consensus 20 ~~~sA~r~L~rwI~~~~~L~~~L~~~Gy~~~~r~~TP~QV~lIv~~LG 67 (69)
T PF14053_consen 20 TPSSAVRKLRRWIRRNPELLEELEATGYHPRQRSFTPRQVRLIVRYLG 67 (69)
T ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHcCCCCCCEecCHHHHHHHHHHcC
Confidence 46777777777774 777777777765444333333444566666554
No 464
>PRK13057 putative lipid kinase; Reviewed
Probab=21.60 E-value=1.3e+02 Score=22.66 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=23.1
Q ss_pred hhCceEEecCChHHHHHHH----HhCCcEEEecCC
Q 031484 53 AAADLIVSRAGAMTCYEIL----ATGKPSILIPSP 83 (159)
Q Consensus 53 ~~ad~~i~~~G~~t~~Eal----~~g~P~I~~p~~ 83 (159)
...|.+|.-+|.+|+-|++ ..+.|+-++|..
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLG 83 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCC
Confidence 3568899889988977754 246788888875
No 465
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.51 E-value=1.6e+02 Score=24.90 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=25.6
Q ss_pred hhhHHHHHhhcCCeeEEEEcCcccHHHHHHHhhc
Q 031484 2 LNLYYQMLMEKHNLFIIWQTGVEAFNEMESLVRN 35 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~ 35 (159)
...+.+++..+||+++++....-+..++.+...+
T Consensus 179 mGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n 212 (699)
T KOG0925|consen 179 MGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGN 212 (699)
T ss_pred HHHHHHHHhhCCCceEEEeecccchHHHHHHhCC
Confidence 3456788888999999998887766677665544
No 466
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.44 E-value=4.1e+02 Score=20.94 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=31.1
Q ss_pred hHHHHHhhcCCeeEEEEcCccc-----HHHHHHHhhcCC-CeEEeccc---c------cHHHHH--hhCceEEecCCh
Q 031484 4 LYYQMLMEKHNLFIIWQTGVEA-----FNEMESLVRNHP-RLLLTPFL---H------SMDLAY--AAADLIVSRAGA 64 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~~~-----~~~l~~~~~~~~-~v~~~~~~---~------~~~~~l--~~ad~~i~~~G~ 64 (159)
.+.+.++.+..-++++++|+.. .+++.+.++... .+.+++.+ | +..+.+ ..+|++|+-+|+
T Consensus 16 ~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 93 (374)
T cd08189 16 QLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGG 93 (374)
T ss_pred HHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3445555554347888888742 345544443222 23433322 1 222333 368999986663
No 467
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.38 E-value=3.9e+02 Score=20.59 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHhhcC----CeeEEEEcCccc--HHHHHHHhhc-CCCeEEe-cccccHHHHHhhCceEEecCC
Q 031484 5 YYQMLMEKH----NLFIIWQTGVEA--FNEMESLVRN-HPRLLLT-PFLHSMDLAYAAADLIVSRAG 63 (159)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~G~~~--~~~l~~~~~~-~~~v~~~-~~~~~~~~~l~~ad~~i~~~G 63 (159)
.-++++++. +-+++ +.|++. =..+..++.. .-.|.+. ..++++.+..+.||++|+..|
T Consensus 146 v~~ll~~~~i~l~Gk~vv-ViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG 211 (285)
T PRK10792 146 IMTLLERYGIDTYGLNAV-VVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVG 211 (285)
T ss_pred HHHHHHHcCCCCCCCEEE-EECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCC
Confidence 445666642 33454 456543 2333333322 2345544 445789999999999998776
No 468
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=21.35 E-value=1.2e+02 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCeEEecccc--cHHHHHhhCceEEecCC
Q 031484 37 PRLLLTPFLH--SMDLAYAAADLIVSRAG 63 (159)
Q Consensus 37 ~~v~~~~~~~--~~~~~l~~ad~~i~~~G 63 (159)
.+..+.+|.+ ++.+.+..+|++|-.+|
T Consensus 77 T~s~V~g~~g~~~L~~al~~advVvIPAG 105 (345)
T KOG1494|consen 77 TNSSVVGFTGADGLENALKGADVVVIPAG 105 (345)
T ss_pred CCCceeccCChhHHHHHhcCCCEEEecCC
Confidence 3557888884 79999999999997665
No 469
>PRK11269 glyoxylate carboligase; Provisional
Probab=21.23 E-value=5.1e+02 Score=21.91 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=40.7
Q ss_pred hHHHHHhhcCCeeEEE-EcCcccHHHHHHHhhcCCCeEEecccc-----cHHHHHhhCc-----eEEecCCh------HH
Q 031484 4 LYYQMLMEKHNLFIIW-QTGVEAFNEMESLVRNHPRLLLTPFLH-----SMDLAYAAAD-----LIVSRAGA------MT 66 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~G~~~~~~l~~~~~~~~~v~~~~~~~-----~~~~~l~~ad-----~~i~~~G~------~t 66 (159)
.+.+.|... +++.++ +-|.....-+..+.+ .++++++.... .|.+-|+.+. ++++++|+ +.
T Consensus 9 ~l~~~L~~~-Gv~~vFg~pG~~~~~l~dal~~-~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~g 86 (591)
T PRK11269 9 AAVLVLEKE-GVTTAFGVPGAAINPFYSAMRK-HGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITG 86 (591)
T ss_pred HHHHHHHHc-CCCEEEeCCCcccHHHHHHHhh-cCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHH
Confidence 444555553 334333 444433333333222 23566555443 3666666555 34555662 35
Q ss_pred HHHHHHhCCcEEEe
Q 031484 67 CYEILATGKPSILI 80 (159)
Q Consensus 67 ~~Eal~~g~P~I~~ 80 (159)
+.+|..-++|+|++
T Consensus 87 l~~A~~~~~Pvl~I 100 (591)
T PRK11269 87 LYSASADSIPILCI 100 (591)
T ss_pred HHHHhhcCCCEEEE
Confidence 78999999999987
No 470
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=21.02 E-value=3.9e+02 Score=20.45 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=36.0
Q ss_pred hcCCeeEEEEcCcccH--HHHHHHhhcCCCeEEecccc-cHHHHHhhCceEEe-------cC------ChHH-HHHHHHh
Q 031484 11 EKHNLFIIWQTGVEAF--NEMESLVRNHPRLLLTPFLH-SMDLAYAAADLIVS-------RA------GAMT-CYEILAT 73 (159)
Q Consensus 11 ~~~~~~~~~~~G~~~~--~~l~~~~~~~~~v~~~~~~~-~~~~~l~~ad~~i~-------~~------G~~t-~~Eal~~ 73 (159)
....+++++.-.++.. .++...+.. .++.++=-.+ .+..+|+.+|.+|. .+ |+-. .+=|-.+
T Consensus 132 ~gk~~~V~v~EsrP~~qG~~la~eL~~-~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~ 210 (275)
T PRK08335 132 KGKRFKVILTESAPDYEGLALANELEF-LGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDN 210 (275)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHHH-CCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 3445666655555432 234222322 2333332222 35677888998873 22 3222 2335568
Q ss_pred CCcEEEe
Q 031484 74 GKPSILI 80 (159)
Q Consensus 74 g~P~I~~ 80 (159)
|+|++++
T Consensus 211 ~vPfyV~ 217 (275)
T PRK08335 211 GVPFYVA 217 (275)
T ss_pred CCCEEEE
Confidence 9999986
No 471
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=20.96 E-value=1.1e+02 Score=25.74 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=27.4
Q ss_pred CCeEEeccccc-----HHHHHhh----CceEEecCChH------HHHHHHHhCCcEEEe
Q 031484 37 PRLLLTPFLHS-----MDLAYAA----ADLIVSRAGAM------TCYEILATGKPSILI 80 (159)
Q Consensus 37 ~~v~~~~~~~~-----~~~~l~~----ad~~i~~~G~~------t~~Eal~~g~P~I~~ 80 (159)
++++++....| |.+-|+. .-++++++|++ .+.||..-++|+|++
T Consensus 48 ~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I 106 (578)
T PRK06112 48 IGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVAL 106 (578)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEE
Confidence 34555544432 4444442 33455666643 389999999999987
No 472
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=20.93 E-value=3.1e+02 Score=19.29 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=30.4
Q ss_pred eEEEEcCcccHHHHHHHhhcC-CCeEEecccccH-HHHHhhCceEEec
Q 031484 16 FIIWQTGVEAFNEMESLVRNH-PRLLLTPFLHSM-DLAYAAADLIVSR 61 (159)
Q Consensus 16 ~~~~~~G~~~~~~l~~~~~~~-~~v~~~~~~~~~-~~~l~~ad~~i~~ 61 (159)
.+++++|..++..+.+.++.. ..+.+.+..+-+ .++...||-++.-
T Consensus 113 ~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L 160 (181)
T COG1432 113 TIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDL 160 (181)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEc
Confidence 466778888776665555443 467777777633 3566788877753
No 473
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=20.77 E-value=6.4e+02 Score=24.70 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCeEEeccccc-----HHHHHhhC----ceEEecCCh------HHHHHHHHhCCcEEEe
Q 031484 37 PRLLLTPFLHS-----MDLAYAAA----DLIVSRAGA------MTCYEILATGKPSILI 80 (159)
Q Consensus 37 ~~v~~~~~~~~-----~~~~l~~a----d~~i~~~G~------~t~~Eal~~g~P~I~~ 80 (159)
+.++++...++ |..-|+.+ -++++.+|+ ..+.||..-++|+|++
T Consensus 338 ~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvI 396 (1655)
T PLN02980 338 PLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLL 396 (1655)
T ss_pred CCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEE
Confidence 45666554443 55555433 346677773 3488999999999998
No 474
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=20.73 E-value=1.8e+02 Score=20.25 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=27.5
Q ss_pred cHHHHHHHhhcCCCeEEeccc----ccHHHHHhhCceEEecCChHHHHHHHHh
Q 031484 25 AFNEMESLVRNHPRLLLTPFL----HSMDLAYAAADLIVSRAGAMTCYEILAT 73 (159)
Q Consensus 25 ~~~~l~~~~~~~~~v~~~~~~----~~~~~~l~~ad~~i~~~G~~t~~Eal~~ 73 (159)
+.+++.+.++. -++.+.... .+..++++.||++|+.-|++. .-++-+
T Consensus 120 Ne~el~~~l~~-~~~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l-~n~~F~ 170 (206)
T PF04577_consen 120 NEDELLEILKK-YGFEVVDPEDLSFEEQVKLFASAKVIIGPHGSAL-TNLLFM 170 (206)
T ss_pred CHHHHHHHHhh-CCeEEEeCCCCCHHHHHHHhcCCCEEEecCchHh-heeeec
Confidence 35666655543 245544322 245678899999999777543 344433
No 475
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=20.61 E-value=1.1e+02 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=17.1
Q ss_pred hcCCeeEEEEcCccc-----HHHHHHHhh
Q 031484 11 EKHNLFIIWQTGVEA-----FNEMESLVR 34 (159)
Q Consensus 11 ~~~~~~~~~~~G~~~-----~~~l~~~~~ 34 (159)
.+|+++|+++||.+. =..|.++.+
T Consensus 68 sNpNIRflilcG~Ev~GHltGqsL~aLh~ 96 (238)
T TIGR01111 68 SNPNIRFLILCGSEVQGHITGQSFKALHE 96 (238)
T ss_pred cCCCceEEEEecCcccCccccHHHHHHHH
Confidence 479999999999852 245666543
No 476
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=20.53 E-value=1.3e+02 Score=19.49 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=20.6
Q ss_pred hCceEEecCChHHHHHHHH----hC-----CcEEEecCC
Q 031484 54 AADLIVSRAGAMTCYEILA----TG-----KPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~~~G~~t~~Eal~----~g-----~P~I~~p~~ 83 (159)
..|.++..+|.+|+.|.+. .+ .|+-++|..
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 3467888788888777554 23 577778875
No 477
>PRK08322 acetolactate synthase; Reviewed
Probab=20.50 E-value=5e+02 Score=21.57 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=40.1
Q ss_pred hhHHHHHhhcCCeeEE-EEcCcccHHHHHHHhhcCCCeEEeccccc-----HHHHHhhCc----eEEecCCh------HH
Q 031484 3 NLYYQMLMEKHNLFII-WQTGVEAFNEMESLVRNHPRLLLTPFLHS-----MDLAYAAAD----LIVSRAGA------MT 66 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~v~~~~~~~~-----~~~~l~~ad----~~i~~~G~------~t 66 (159)
+.+.+.|... +++.+ -+-|.....-+..+ . .+++.++....+ |.+-|+.+. ++++++|+ +.
T Consensus 5 ~~l~~~L~~~-Gv~~vFg~pG~~~~~l~dal-~-~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~ 81 (547)
T PRK08322 5 DLFVKCLENE-GVEYIFGIPGEENLDLLEAL-R-DSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTG 81 (547)
T ss_pred HHHHHHHHHc-CCCEEEeCCCcchHHHHHHH-H-hcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHH
Confidence 3455556553 33333 34444333322332 2 245655544432 444443332 56666662 35
Q ss_pred HHHHHHhCCcEEEe
Q 031484 67 CYEILATGKPSILI 80 (159)
Q Consensus 67 ~~Eal~~g~P~I~~ 80 (159)
+.||..-++|+|++
T Consensus 82 i~~A~~~~~Pll~i 95 (547)
T PRK08322 82 VAYAQLGGMPMVAI 95 (547)
T ss_pred HHHHhhcCCCEEEE
Confidence 88999999999987
No 478
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.46 E-value=4.3e+02 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=27.1
Q ss_pred cHHHHHhhCceEEecCChHHHHHHHHhCCcEEEecCCC
Q 031484 47 SMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPN 84 (159)
Q Consensus 47 ~~~~~l~~ad~~i~~~G~~t~~Eal~~g~P~I~~p~~~ 84 (159)
.....++++.+||+.-=.+ ..=+..+|+|-|++|..+
T Consensus 261 ~g~~~l~s~~lViTdRLHg-hIlStL~giPhivi~NSy 297 (339)
T COG5039 261 AGIYFLQSAELVITDRLHG-HILSTLTGIPHIVIPNSY 297 (339)
T ss_pred HHHHHHhhceeeeechhHH-HHHHHHhCCCeEEecCcc
Confidence 3567789999999843222 234677999999999875
No 479
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.42 E-value=2.9e+02 Score=21.40 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=18.2
Q ss_pred hCceEEe--cCChHHHHH-HHHhCCcEEEecCC
Q 031484 54 AADLIVS--RAGAMTCYE-ILATGKPSILIPSP 83 (159)
Q Consensus 54 ~ad~~i~--~~G~~t~~E-al~~g~P~I~~p~~ 83 (159)
+=|++|+ .+|+.+++. .-+.|+|++.+|..
T Consensus 99 kPdlvi~~~~aGP~~vl~qLraagV~vv~v~~~ 131 (300)
T COG4558 99 KPDLVIGSEGAGPATVLDQLRAAGVPVVTVPEQ 131 (300)
T ss_pred CCCEEEeecccCcHHHHHHHHHcCCcEEEcCCC
Confidence 4455664 235544444 66788888888743
No 480
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=20.42 E-value=1.1e+02 Score=24.20 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=33.9
Q ss_pred hHHHHHhh--cCCeeEEEEcCccc---HHHHHH---HhhcCCCeEEecccccHHHHH-hhCceEEecCC
Q 031484 4 LYYQMLME--KHNLFIIWQTGVEA---FNEMES---LVRNHPRLLLTPFLHSMDLAY-AAADLIVSRAG 63 (159)
Q Consensus 4 ~~~~~~~~--~~~~~~~~~~G~~~---~~~l~~---~~~~~~~v~~~~~~~~~~~~l-~~ad~~i~~~G 63 (159)
.|.+.+.. +|.+-+ +-.|.+. .+..++ +++..+.+.|+|++.. .+++ -.+|+++|.+.
T Consensus 165 ~ya~~v~~~~~PrVgL-LNIG~Ee~KG~e~~kea~~lLk~~~~~nF~GnvEg-~di~~G~~DVvV~DGF 231 (338)
T COG0416 165 AYAEKVLGIKNPRVGL-LNIGTEEIKGNELVKEAYELLKETPLINFIGNVEG-RDILDGTVDVVVTDGF 231 (338)
T ss_pred HHHHHhcCCCCCcEEE-EecccccccCCHHHHHHHHHHHhCCCCceeeeccc-cccccCCCCEEEeCCc
Confidence 34444544 354444 5567542 222232 2444566899999953 3445 68999999764
No 481
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.35 E-value=3.2e+02 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=18.3
Q ss_pred hCCcEEEecCCC---CCCchHHHHHHHHHHcCceee
Q 031484 73 TGKPSILIPSPN---VAEGHQFKNASLMAKLADSRI 105 (159)
Q Consensus 73 ~g~P~I~~p~~~---~~~~~q~~~~~~~~~~~~g~~ 105 (159)
.++|+++.|... +...-...|.+.+.+.|.-++
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 146 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEI 146 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEE
Confidence 389999998531 000112335666776666443
No 482
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=20.18 E-value=63 Score=17.91 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=20.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Q 031484 119 TIEEILGNEALMAEMSERALKAAKPGASADIAQHILSL 156 (159)
Q Consensus 119 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 156 (159)
...+.+.||.+++.+.- -..|.+++++.|+++
T Consensus 21 ~rtkmianpaf~qkipl------ietgcekm~dyieel 52 (62)
T PF10653_consen 21 DRTKMIANPAFQQKIPL------IETGCEKMTDYIEEL 52 (62)
T ss_pred chHHHhcCHHHHhccch------hhhhhHHHHHHHHHH
Confidence 34466778887653211 345888888888775
No 483
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=20.03 E-value=5.4e+02 Score=21.73 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCeEEecccc-----cHHHHHhhCc----eEEecCC------hHHHHHHHHhCCcEEEec
Q 031484 37 PRLLLTPFLH-----SMDLAYAAAD----LIVSRAG------AMTCYEILATGKPSILIP 81 (159)
Q Consensus 37 ~~v~~~~~~~-----~~~~~l~~ad----~~i~~~G------~~t~~Eal~~g~P~I~~p 81 (159)
++++++.... .|.+-|+.+. +++++.| .+.+.||..-+.|+|++.
T Consensus 40 ~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~ 99 (578)
T PRK06546 40 GGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIA 99 (578)
T ss_pred CCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3566554433 2555554442 3444444 135889999999999873
No 484
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=20.02 E-value=5.3e+02 Score=21.64 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=27.1
Q ss_pred CeEEeccccc-----HHHHHhhCc----eEEecCCh------HHHHHHHHhCCcEEEe
Q 031484 38 RLLLTPFLHS-----MDLAYAAAD----LIVSRAGA------MTCYEILATGKPSILI 80 (159)
Q Consensus 38 ~v~~~~~~~~-----~~~~l~~ad----~~i~~~G~------~t~~Eal~~g~P~I~~ 80 (159)
++.++.-..+ +.+-|+.+. ++++++|+ +.+.||..-++|+|++
T Consensus 43 ~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i 100 (572)
T PRK06456 43 ELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAI 100 (572)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEE
Confidence 4655544432 455554332 45556662 3478999999999998
Done!