Query 031485
Match_columns 159
No_of_seqs 152 out of 1246
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_Y 50S ribosomal protein L 100.0 1.2E-36 4.2E-41 222.8 11.7 105 12-119 4-109 (110)
2 3r8s_U 50S ribosomal protein L 100.0 9.3E-35 3.2E-39 210.3 10.3 95 13-109 2-98 (102)
3 2ftc_N Mitochondrial ribosomal 100.0 3.1E-34 1E-38 205.6 11.1 93 18-110 1-93 (96)
4 2zjr_R 50S ribosomal protein L 100.0 1.1E-35 3.8E-40 219.4 3.3 105 5-110 6-111 (115)
5 3bbo_W Ribosomal protein L24; 100.0 4.6E-36 1.6E-40 236.9 -3.2 118 3-123 51-175 (191)
6 1vq8_T 50S ribosomal protein L 99.9 1.1E-24 3.6E-29 161.5 5.3 78 6-93 34-111 (120)
7 3j21_U 50S ribosomal protein L 99.9 1.7E-24 5.7E-29 160.7 4.8 79 5-93 36-114 (121)
8 2zkr_t 60S ribosomal protein L 99.9 1.1E-22 3.8E-27 154.9 5.8 77 5-91 39-116 (145)
9 3u5e_Y L33, YL33, 60S ribosoma 99.9 1.8E-22 6E-27 150.7 6.1 74 5-88 40-113 (127)
10 3iz5_Y 60S ribosomal protein L 99.9 3.5E-22 1.2E-26 152.5 6.0 74 5-88 39-112 (150)
11 4a17_S RPL26, 60S ribosomal pr 99.9 3.3E-22 1.1E-26 150.4 5.4 74 5-88 39-112 (135)
12 1nz9_A Transcription antitermi 98.4 2.8E-07 9.6E-12 59.2 5.1 36 13-48 3-38 (58)
13 3p8b_B Transcription antitermi 97.7 3.1E-05 1.1E-09 58.3 4.6 58 13-84 90-147 (152)
14 2e6z_A Transcription elongatio 97.5 4.4E-05 1.5E-09 49.2 2.2 37 12-48 5-41 (59)
15 2jvv_A Transcription antitermi 97.0 0.00064 2.2E-08 52.2 4.8 37 12-48 125-161 (181)
16 2do3_A Transcription elongatio 96.8 0.003 1E-07 42.1 6.0 40 14-54 17-56 (69)
17 2ckk_A KIN17; beta barrel, rib 96.7 0.0023 7.8E-08 47.2 5.1 33 16-48 72-104 (127)
18 2xhc_A Transcription antitermi 96.1 0.0067 2.3E-07 51.7 5.3 37 12-48 296-332 (352)
19 1m1h_A Transcription antitermi 95.5 0.0022 7.5E-08 52.3 0.0 37 12-48 192-228 (248)
20 4a18_F RPL14; ribosome, eukary 93.5 0.099 3.4E-06 38.5 4.7 36 15-51 7-42 (126)
21 3iz5_N 60S ribosomal protein L 92.5 0.16 5.4E-06 37.8 4.6 36 15-51 7-42 (134)
22 2joy_A 50S ribosomal protein L 92.1 0.11 3.7E-06 36.3 3.1 36 15-51 4-39 (96)
23 2e70_A Transcription elongatio 91.8 0.2 6.8E-06 33.3 4.0 33 16-48 19-51 (71)
24 3izc_N 60S ribosomal protein R 90.8 0.23 7.9E-06 37.0 3.9 35 15-50 15-49 (138)
25 4a18_N RPL27, ribosomal protei 90.4 0.37 1.3E-05 36.2 4.7 38 15-52 5-48 (144)
26 3j21_5 50S ribosomal protein L 90.2 0.23 7.8E-06 33.8 3.2 36 15-51 4-39 (83)
27 4a18_E RPL6; ribosome, eukaryo 86.2 0.91 3.1E-05 35.5 4.7 63 14-81 44-109 (191)
28 3iz6_D 40S ribosomal protein S 84.5 1.3 4.5E-05 36.3 5.0 40 10-49 170-212 (265)
29 3iz5_G 60S ribosomal protein L 82.8 0.7 2.4E-05 36.9 2.6 63 14-81 74-139 (219)
30 1qp2_A Protein (PSAE protein); 81.4 1.6 5.6E-05 28.8 3.6 38 15-52 2-45 (70)
31 3j20_E 30S ribosomal protein S 79.7 1.4 4.7E-05 35.7 3.4 42 9-50 173-218 (243)
32 2xzm_W 40S ribosomal protein S 79.1 3.3 0.00011 33.8 5.5 41 9-49 171-214 (260)
33 3u5c_E RP5, S7, YS6, 40S ribos 78.6 1.3 4.4E-05 36.3 2.9 40 10-49 170-212 (261)
34 2oug_A Transcriptional activat 77.2 0.0061 2.1E-07 45.7 -10.6 30 13-42 108-137 (162)
35 3kbg_A 30S ribosomal protein S 76.6 2.1 7E-05 34.0 3.5 40 9-48 133-176 (213)
36 3izc_G 60S ribosomal protein R 75.7 1.7 5.9E-05 33.5 2.7 63 14-81 33-98 (176)
37 2jz2_A SSL0352 protein; SH3-li 72.1 13 0.00045 24.0 5.9 40 15-54 2-43 (66)
38 2zzd_A Thiocyanate hydrolase s 65.8 6.8 0.00023 28.6 3.9 28 12-39 34-71 (126)
39 1ugp_B NitrIle hydratase beta 54.7 12 0.00041 29.7 3.9 28 12-39 136-173 (226)
40 3qyh_B CO-type nitrIle hydrata 54.5 12 0.00042 29.6 3.9 27 13-39 129-165 (219)
41 3hht_B NitrIle hydratase beta 53.7 13 0.00044 29.7 3.9 27 13-39 140-176 (229)
42 1zuy_A Myosin-5 isoform; SH3 d 49.5 17 0.00059 21.3 3.3 17 11-27 16-32 (58)
43 4e8b_A Ribosomal RNA small sub 48.4 15 0.00052 29.1 3.6 44 4-47 23-66 (251)
44 1at0_A 17-hedgehog; developmen 48.2 27 0.00091 25.2 4.7 31 9-39 86-117 (145)
45 2ew3_A SH3-containing GRB2-lik 47.9 11 0.00038 23.5 2.2 17 11-27 18-34 (68)
46 3dcl_A TM1086; SAD, structural 47.8 28 0.00097 28.5 5.1 33 16-48 85-117 (284)
47 1vhy_A Hypothetical protein HI 47.4 17 0.00057 29.0 3.8 45 4-48 25-69 (257)
48 4fm4_B NitrIle hydratase beta 47.3 17 0.00059 28.4 3.7 27 13-39 117-153 (206)
49 1dj7_B Ferredoxin thioredoxin 47.1 21 0.00073 23.7 3.6 26 16-41 2-41 (75)
50 2g6f_X RHO guanine nucleotide 46.7 12 0.00042 22.3 2.2 17 11-27 19-35 (59)
51 1sem_A SEM-5; SRC-homology 3 ( 46.0 13 0.00044 22.0 2.2 17 11-27 17-33 (58)
52 1jb0_E Photosystem 1 reaction 45.3 30 0.001 22.9 4.0 37 15-51 1-44 (75)
53 1vhk_A Hypothetical protein YQ 44.3 22 0.00076 28.4 4.0 44 4-47 26-69 (268)
54 1uti_A GRB2-related adaptor pr 44.2 14 0.00048 21.8 2.2 16 11-26 16-31 (58)
55 1k4u_S Phagocyte NADPH oxidase 43.8 18 0.00062 21.7 2.7 16 11-26 20-35 (62)
56 2bzy_A CRK-like protein, CRKL 43.6 14 0.00048 22.7 2.2 17 10-26 17-33 (67)
57 3kw2_A Probable R-RNA methyltr 42.9 21 0.00073 28.4 3.7 44 4-47 22-65 (257)
58 2ege_A Uncharacterized protein 42.5 17 0.00057 23.0 2.5 16 10-25 28-43 (75)
59 2nwm_A Vinexin; cell adhesion; 42.3 15 0.00052 22.6 2.2 18 11-28 16-33 (65)
60 1zuu_A BZZ1 protein; SH3 domai 41.8 23 0.00079 20.8 3.0 17 11-27 16-32 (58)
61 2vwf_A Growth factor receptor- 41.8 16 0.00055 21.5 2.2 16 11-26 17-32 (58)
62 2ak5_A RHO guanine nucleotide 41.8 16 0.00054 22.1 2.2 17 11-27 21-37 (64)
63 3izc_a 60S ribosomal protein R 41.6 2.1 7.3E-05 31.7 -2.3 40 15-54 5-50 (136)
64 2gnc_A SLIT-ROBO RHO GTPase-ac 40.8 17 0.00058 21.7 2.2 16 11-26 21-36 (60)
65 1j3t_A Intersectin 2; beta bar 40.8 16 0.00056 22.9 2.2 15 12-26 26-40 (74)
66 2yuo_A CIP85, RUN and TBC1 dom 40.8 16 0.00055 23.1 2.2 15 11-25 22-36 (78)
67 1z85_A Hypothetical protein TM 40.4 25 0.00085 27.7 3.7 44 4-48 31-74 (234)
68 2xmf_A Myosin 1E SH3; motor pr 40.4 17 0.00059 21.6 2.2 17 11-27 20-36 (60)
69 1x2k_A OSTF1, osteoclast stimu 40.3 20 0.00069 22.0 2.6 16 11-26 22-37 (68)
70 2dl3_A Sorbin and SH3 domain-c 40.1 22 0.00075 21.7 2.7 16 11-26 22-37 (68)
71 3c0c_A Endophilin-A2; endocyto 40.1 17 0.00058 22.7 2.2 17 11-27 28-44 (73)
72 1w70_A Neutrophil cytosol fact 40.0 18 0.00061 21.6 2.2 17 11-27 19-35 (60)
73 1ruw_A Myosin-3 isoform, MYO3; 39.9 28 0.00097 21.2 3.3 18 10-27 17-34 (69)
74 2x3w_D Syndapin I, protein kin 39.5 28 0.00097 20.5 3.1 16 11-26 18-33 (60)
75 2eyx_A V-CRK sarcoma virus CT1 39.5 14 0.00048 22.8 1.7 17 10-26 22-38 (67)
76 1v6z_A Hypothetical protein TT 39.2 33 0.0011 26.7 4.2 43 4-48 18-60 (228)
77 1uhc_A KIAA1010 protein; beta 39.1 22 0.00075 22.5 2.7 17 11-27 28-44 (79)
78 2iim_A Proto-oncogene tyrosine 39.0 25 0.00084 21.0 2.8 16 11-26 21-36 (62)
79 3a8g_B NitrIle hydratase subun 38.9 22 0.00075 27.9 3.1 25 12-36 120-154 (212)
80 2a28_A BZZ1 protein; SH3 domai 38.7 35 0.0012 19.7 3.4 17 11-27 15-31 (54)
81 2dl8_A SLIT-ROBO RHO GTPase-ac 38.4 19 0.00064 22.4 2.2 15 11-25 24-38 (72)
82 2ysq_A RHO guanine nucleotide 36.7 24 0.00084 22.4 2.6 16 11-26 25-40 (81)
83 1csk_A C-SRC SH3 domain; phosp 36.6 27 0.00091 21.5 2.7 15 11-25 26-40 (71)
84 2oqk_A Putative translation in 35.4 41 0.0014 23.7 3.8 31 12-42 68-98 (117)
85 2ebp_A SAM and SH3 domain-cont 35.3 28 0.00096 21.8 2.7 17 10-26 25-41 (73)
86 1uhf_A Intersectin 2; beta bar 35.1 29 0.00099 21.3 2.7 15 11-25 23-37 (69)
87 3eg3_A Proto-oncogene tyrosine 35.1 24 0.00081 21.0 2.2 15 11-25 20-34 (63)
88 1k1z_A VAV; SH3, proto-oncogen 34.9 39 0.0013 21.2 3.4 16 11-26 33-48 (78)
89 3j21_R 50S ribosomal protein L 34.9 67 0.0023 22.2 4.7 35 14-48 34-78 (97)
90 2ydl_A SH3 domain-containing k 34.8 23 0.0008 22.1 2.2 16 11-26 17-32 (69)
91 3iz5_a 60S ribosomal protein L 34.7 2 6.8E-05 31.9 -3.3 39 15-53 5-49 (136)
92 1w1f_A Tyrosine-protein kinase 34.6 24 0.00084 21.2 2.3 16 11-26 22-37 (65)
93 1cka_A C-CRK N-terminal SH3 do 34.5 44 0.0015 19.4 3.4 16 11-26 16-31 (57)
94 1gcq_C VAV proto-oncogene; SH3 34.2 42 0.0014 20.4 3.4 16 11-26 25-40 (70)
95 4b6m_A Tubulin-specific chaper 34.1 31 0.0011 23.2 2.9 24 14-40 5-28 (84)
96 2epd_A RHO GTPase-activating p 34.0 21 0.00072 22.5 1.9 16 11-26 25-40 (76)
97 1whl_A Cylindromatosis tumor s 33.4 36 0.0012 23.1 3.2 27 13-39 6-33 (95)
98 1vq8_Q 50S ribosomal protein L 33.3 64 0.0022 22.2 4.4 35 15-49 34-78 (96)
99 2fei_A CD2-associated protein; 32.8 21 0.00071 22.0 1.7 16 11-26 16-31 (65)
100 2dlp_A KIAA1783 protein; SH3 d 32.6 27 0.00094 22.4 2.4 15 11-25 23-37 (85)
101 4a17_P RPL21, 60S ribosomal pr 32.3 35 0.0012 25.7 3.2 35 14-48 33-77 (157)
102 2k9g_A SH3 domain-containing k 32.3 27 0.00093 21.6 2.2 16 11-26 24-39 (73)
103 2egv_A UPF0088 protein AQ_165; 31.9 31 0.0011 26.9 2.9 42 4-47 19-60 (229)
104 2lcs_A NAP1-binding protein 2; 31.7 36 0.0012 21.4 2.7 16 11-26 20-35 (73)
105 2dl7_A KIAA0769 protein; SH3 d 31.6 28 0.00096 21.6 2.2 16 11-26 23-38 (73)
106 2dbk_A CRK-like protein; struc 31.5 34 0.0012 22.1 2.7 19 10-28 32-50 (88)
107 2dmo_A Neutrophil cytosol fact 31.3 25 0.00087 21.5 1.9 16 11-26 22-37 (68)
108 2d8h_A SH3YL1 protein; SH3 dom 31.1 43 0.0015 21.1 3.1 17 11-27 32-48 (80)
109 2vv5_A MSCS, small-conductance 31.0 40 0.0014 26.9 3.6 24 12-40 127-150 (286)
110 2vkn_A Protein SSU81; membrane 30.9 46 0.0016 20.3 3.2 15 11-25 22-36 (70)
111 1i07_A Epidermal growth factor 30.5 33 0.0011 20.3 2.4 16 11-26 16-31 (60)
112 2l0a_A STAM-1, signal transduc 30.5 29 0.001 21.9 2.2 15 11-25 32-46 (72)
113 1b07_A Protein (proto-oncogene 30.4 54 0.0018 19.9 3.4 16 11-26 18-33 (65)
114 2enm_A Sorting nexin-9; SH3-li 30.2 53 0.0018 20.4 3.4 16 11-26 25-40 (77)
115 2jt4_A Cytoskeleton assembly c 30.0 52 0.0018 20.0 3.3 16 11-26 21-36 (71)
116 1yn8_A NBP2, NAP1-binding prot 29.7 34 0.0011 20.0 2.3 15 11-25 16-30 (59)
117 2dbm_A SH3-containing GRB2-lik 29.7 21 0.00073 22.2 1.4 17 11-27 22-38 (73)
118 2ega_A SH3 and PX domain-conta 29.6 25 0.00086 21.6 1.7 16 11-26 23-38 (70)
119 3udc_A Small-conductance mecha 29.3 40 0.0014 26.9 3.2 23 13-40 127-149 (285)
120 1x69_A Cortactin isoform A; SH 29.3 31 0.0011 21.8 2.1 16 11-26 32-47 (79)
121 3tee_A Flagella basal BODY P-r 29.1 44 0.0015 26.0 3.4 40 9-49 135-186 (219)
122 2oi3_A Tyrosine-protein kinase 28.9 32 0.0011 22.0 2.2 16 11-26 40-55 (86)
123 2eqm_A PHD finger protein 20-l 28.9 1E+02 0.0035 20.5 4.8 37 12-48 17-53 (88)
124 4a4f_A SurviVal of motor neuro 28.7 1E+02 0.0036 18.9 4.8 36 13-48 7-43 (64)
125 1ujy_A RHO guanine nucleotide 28.7 22 0.00075 22.3 1.3 16 11-26 25-40 (76)
126 2da9_A SH3-domain kinase bindi 28.4 33 0.0011 21.0 2.1 16 11-26 22-37 (70)
127 1nm7_A Peroxisomal membrane pr 28.2 47 0.0016 20.8 2.9 16 12-27 24-39 (69)
128 1wxt_A Hypothetical protein FL 27.6 47 0.0016 20.2 2.7 15 11-25 22-36 (68)
129 2v1r_A Peroxisomal membrane pr 27.2 47 0.0016 20.8 2.8 15 12-26 31-45 (80)
130 2b86_A Cytoplasmic protein NCK 26.6 38 0.0013 21.0 2.2 15 11-25 19-33 (67)
131 1a62_A RHO; transcription term 26.5 41 0.0014 24.1 2.6 23 8-30 84-106 (130)
132 3i4o_A Translation initiation 26.1 40 0.0014 22.3 2.3 29 8-36 47-75 (79)
133 1ugv_A KIAA0621, olygophrenin- 25.9 24 0.00081 22.0 1.1 15 11-25 25-39 (72)
134 3sd4_A PHD finger protein 20; 25.6 1.3E+02 0.0043 18.8 5.1 37 11-47 9-45 (69)
135 1jqq_A PEX13P, peroxisomal mem 25.4 52 0.0018 21.3 2.8 16 12-27 31-46 (92)
136 2dl5_A KIAA0769 protein; SH3 d 25.2 58 0.002 20.4 2.9 17 11-27 28-44 (78)
137 1d7q_A Translation initiation 25.2 83 0.0029 23.1 4.1 32 12-43 67-98 (143)
138 2k52_A Uncharacterized protein 25.2 98 0.0033 19.5 4.1 25 14-48 45-69 (80)
139 1tg0_A BBC1 protein, myosin ta 25.1 35 0.0012 20.8 1.8 16 11-26 22-37 (68)
140 1jt8_A EIF-1A, probable transl 25.0 37 0.0013 23.6 2.0 30 12-41 56-86 (102)
141 2bz8_A SH3-domain kinase bindi 24.9 54 0.0018 19.1 2.6 17 11-27 16-32 (58)
142 2k2m_A EPS8-like protein 1; al 24.9 66 0.0023 19.5 3.1 14 12-25 24-37 (68)
143 2csi_A RIM-BP2, RIM binding pr 24.9 66 0.0023 20.0 3.2 17 10-26 28-44 (76)
144 2yup_A Vinexin; sorbin and SH3 24.8 43 0.0015 21.7 2.3 16 11-26 32-47 (90)
145 1u5s_A Cytoplasmic protein NCK 24.8 47 0.0016 20.3 2.4 16 11-26 21-36 (71)
146 1hr0_W Translation initiation 24.8 50 0.0017 21.0 2.5 18 8-25 40-57 (71)
147 3rnj_A Brain-specific angiogen 24.4 69 0.0023 19.2 3.1 14 13-26 25-38 (67)
148 2rf0_A Mitogen-activated prote 24.2 56 0.0019 21.4 2.8 15 12-26 45-59 (89)
149 1gbq_A GRB2; complex (signal t 24.2 53 0.0018 20.4 2.6 17 11-27 24-40 (74)
150 2kxc_A Brain-specific angiogen 24.0 39 0.0013 20.4 1.8 16 11-26 22-37 (67)
151 2in0_A Endonuclease PI-MTUI; h 23.9 55 0.0019 22.8 2.9 29 12-40 84-113 (139)
152 1wx6_A Cytoplasmic protein NCK 23.7 77 0.0026 20.3 3.4 16 11-26 32-47 (91)
153 1x6g_A Megakaryocyte-associate 23.2 84 0.0029 19.8 3.5 16 11-26 32-47 (81)
154 1wi7_A SH3-domain kinase bindi 23.1 37 0.0013 20.6 1.6 15 11-25 22-36 (68)
155 1jo8_A ABP1P, actin binding pr 22.7 60 0.0021 18.9 2.5 16 11-26 15-30 (58)
156 2vc8_A Enhancer of mRNA-decapp 22.5 1.8E+02 0.0062 19.5 5.2 34 17-50 8-42 (84)
157 2ed1_A 130 kDa phosphatidylino 22.4 41 0.0014 21.0 1.7 15 11-25 25-39 (76)
158 2rqr_A CED-12 homolog, engulfm 21.9 51 0.0017 22.8 2.3 15 11-25 74-88 (119)
159 1mhn_A SurviVal motor neuron p 21.9 1.4E+02 0.0047 17.9 4.7 35 14-48 3-38 (59)
160 1lpl_A Hypothetical 25.4 kDa p 21.7 95 0.0033 21.0 3.6 26 14-40 11-37 (95)
161 2csq_A RIM-BP2, RIM binding pr 21.4 90 0.0031 20.4 3.4 16 10-25 39-54 (97)
162 2lj0_A Sorbin and SH3 domain-c 21.3 61 0.0021 20.0 2.4 18 11-28 21-38 (65)
163 1x6b_A RHO guanine exchange fa 21.0 45 0.0015 21.0 1.7 15 11-25 32-46 (79)
164 2vb2_X Copper protein, cation 21.0 1.9E+02 0.0064 19.1 7.3 19 31-49 18-36 (88)
165 2drm_A Acanthamoeba myosin IB; 20.4 74 0.0025 18.4 2.5 17 11-27 18-34 (58)
166 1ah9_A IF1, initiation factor 20.3 55 0.0019 20.7 2.0 15 10-24 41-55 (71)
167 1y43_B Aspergillopepsin II hea 20.2 70 0.0024 24.2 2.9 41 3-53 45-85 (173)
168 2oaw_A Spectrin alpha chain, b 20.1 72 0.0025 18.8 2.5 16 11-26 16-31 (65)
No 1
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=100.00 E-value=1.2e-36 Score=222.76 Aligned_cols=105 Identities=39% Similarity=0.675 Sum_probs=98.3
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCC-CCCCceEEEeeeccCCCccccCCCCCCce
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPC 90 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~-~~~g~i~~~e~pI~~SnV~Lvdp~~g~~~ 90 (159)
.|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|++|++ +.+|+++++|+|||+|||+|+||++++++
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 83 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPT 83 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSBC
T ss_pred ccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCcc
Confidence 68999999999999999999999999999999999999999999999986 56899999999999999999999999999
Q ss_pred eEEEEEccCCcEEEEEEecCCCCeeecCC
Q 031485 91 KVGTKYLEDGTKVRVARGIGASGSIIPRP 119 (159)
Q Consensus 91 rV~~~~~~~g~k~R~~k~~~~~~~~IPwP 119 (159)
||+|++++||+++|+|+ .||.+|+.|
T Consensus 84 Rvg~~~~edG~kvRv~k---k~g~~i~~~ 109 (110)
T 3v2d_Y 84 RVRKKFLENGKKIRVCA---KCGGALDTE 109 (110)
T ss_dssp CEEEEECSSCCEEEEES---SSCCBCC--
T ss_pred EEEEEECCCCcEEEEEe---cCCCccCCC
Confidence 99999999999999999 578888755
No 2
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=100.00 E-value=9.3e-35 Score=210.29 Aligned_cols=95 Identities=48% Similarity=0.720 Sum_probs=90.8
Q ss_pred cccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCC--CCCCceEEEeeeccCCCccccCCCCCCce
Q 031485 13 WKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGE--GHEGGIFTVEAPIHASNVQVLDPVTGKPC 90 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~--~~~g~i~~~e~pI~~SnV~Lvdp~~g~~~ 90 (159)
++|++||+|+||+|+|||++|+|++|+++ ++|+|||+|+.++|.+|++ +++|+++++|+|||+|||+|+||++++++
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 80 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD 80 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEE
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCce
Confidence 47999999999999999999999999999 9999999999999999875 67899999999999999999999999999
Q ss_pred eEEEEEccCCcEEEEEEec
Q 031485 91 KVGTKYLEDGTKVRVARGI 109 (159)
Q Consensus 91 rV~~~~~~~g~k~R~~k~~ 109 (159)
||+|+ ++||+++|+|++|
T Consensus 81 rvg~~-~edG~kvRv~k~~ 98 (102)
T 3r8s_U 81 RVGFR-FEDGKKVRFFKSN 98 (102)
T ss_dssp CEEEE-EETTEEEEEETTT
T ss_pred EEEEE-eCCCeEEEEEeec
Confidence 99999 7999999999954
No 3
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=100.00 E-value=3.1e-34 Score=205.61 Aligned_cols=93 Identities=35% Similarity=0.596 Sum_probs=89.6
Q ss_pred CCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCCCCCCceeEEEEEc
Q 031485 18 GDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYL 97 (159)
Q Consensus 18 GD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp~~g~~~rV~~~~~ 97 (159)
||+|+||+|+||||+|+|++|++++++|+|||+|+.++|++++++.+|+++++|+|||+|||+|+||.+++++||+|+++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~~ 80 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFT 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEEc
Confidence 89999999999999999999999999999999999999999988778999999999999999999999999999999999
Q ss_pred cCCcEEEEEEecC
Q 031485 98 EDGTKVRVARGIG 110 (159)
Q Consensus 98 ~~g~k~R~~k~~~ 110 (159)
++|+++|+|++|+
T Consensus 81 ~dg~kvR~~kk~g 93 (96)
T 2ftc_N 81 EAGERVRVSTRSG 93 (96)
T ss_pred cCCcEEEEEeccC
Confidence 9999999999654
No 4
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=100.00 E-value=1.1e-35 Score=219.40 Aligned_cols=105 Identities=36% Similarity=0.581 Sum_probs=99.0
Q ss_pred hHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCC-CCCCceEEEeeeccCCCccccC
Q 031485 5 AAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLD 83 (159)
Q Consensus 5 ~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~-~~~g~i~~~e~pI~~SnV~Lvd 83 (159)
..+|.+++|+|++||+|+||+|+|||++|+|++|++++|+|+|||+|+.++|+++++ +.+|+++++|+|||+|||+|+|
T Consensus 6 ~~~~~~rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~ 85 (115)
T 2zjr_R 6 AGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVD 85 (115)
T ss_dssp CSTTTTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBS
T ss_pred CccccceeCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEe
Confidence 367899999999999999999999999999999999999999999999999999975 5689999999999999999999
Q ss_pred CCCCCceeEEEEEccCCcEEEEEEecC
Q 031485 84 PVTGKPCKVGTKYLEDGTKVRVARGIG 110 (159)
Q Consensus 84 p~~g~~~rV~~~~~~~g~k~R~~k~~~ 110 (159)
|++++++||+|++ ++|+++|+|++|+
T Consensus 86 p~~~k~tRvg~~~-~dG~kvR~~kk~g 111 (115)
T 2zjr_R 86 PETGKATRVRKQI-VDGKKVRVAVASG 111 (115)
T ss_dssp SSSBCCCCCCCCC-SCTTSCCCCSSSC
T ss_pred ccCCCceEEEEEE-cCCCEEEEEeecC
Confidence 9999999999998 7899999999543
No 5
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.6e-36 Score=236.85 Aligned_cols=118 Identities=34% Similarity=0.546 Sum_probs=98.7
Q ss_pred cHhHhhcchhcc------cccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCC-CCCCceEEEeeecc
Q 031485 3 WKAAEKLIRHWK------ILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGE-GHEGGIFTVEAPIH 75 (159)
Q Consensus 3 ~~~~~~~ir~~~------i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~-~~~g~i~~~e~pI~ 75 (159)
|-..+|.++.++ |++||+|+||+|+||||+|+|++|++++|+|+|||+|+.++|+++++ +.+|+++++|+|||
T Consensus 51 ~lr~k~~~rslP~~~kmkIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIh 130 (191)
T 3bbo_W 51 WERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIH 130 (191)
T ss_dssp ------------CTTSCCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCC
T ss_pred HHHHHhCCCCCCccccCeeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcC
Confidence 566777777655 99999999999999999999999999999999999999999999975 56799999999999
Q ss_pred CCCccccCCCCCCceeEEEEEccCCcEEEEEEecCCCCeeecCCCccc
Q 031485 76 ASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILK 123 (159)
Q Consensus 76 ~SnV~Lvdp~~g~~~rV~~~~~~~g~k~R~~k~~~~~~~~IPwP~~~~ 123 (159)
+|||+|+||++++++||+|++++||+++|+|+ .+|.+|++|....
T Consensus 131 iSNV~Lvdp~~gkptRVg~k~~edGkKVRv~K---ksGe~I~~p~~~~ 175 (191)
T 3bbo_W 131 SSNVMLILKEQEVADRVGHKILEDVRKVRYLI---KTGEIVDTPDRWK 175 (191)
T ss_dssp GGGEEECSSSSCCCCCCCCCSSSCCCCCSSSC---CSSSCCCCCC---
T ss_pred HHHeEEEeccCCCceEEEEEEccCCcEEEEEe---cCCCCcCChhHHH
Confidence 99999999999999999999988999999999 6888999998764
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.90 E-value=1.1e-24 Score=161.53 Aligned_cols=78 Identities=29% Similarity=0.376 Sum_probs=71.8
Q ss_pred HhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCCC
Q 031485 6 AEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPV 85 (159)
Q Consensus 6 ~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp~ 85 (159)
.+|.+++|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+ ++ .+|+ ++|+|||+|||+|+||.
T Consensus 34 ~ky~vr~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~-kK-------~~Gg--~~e~pIh~SNV~i~~~~ 103 (120)
T 1vq8_T 34 EEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL-EK-------TDGE--EVPRPLDTSNVRVTDLD 103 (120)
T ss_dssp HHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE-EC-------SSSC--EEECCBCGGGEEEEECC
T ss_pred HhhccccccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe-Ec-------CCCC--EEEeeechHHEEEEecc
Confidence 56889999999999999999999999999999999999999999999 54 2355 89999999999999999
Q ss_pred CCCceeEE
Q 031485 86 TGKPCKVG 93 (159)
Q Consensus 86 ~g~~~rV~ 93 (159)
+++++|++
T Consensus 104 ~~k~~Rv~ 111 (120)
T 1vq8_T 104 LEDEKREA 111 (120)
T ss_dssp CCCHHHHH
T ss_pred CCCchhhe
Confidence 99998875
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.90 E-value=1.7e-24 Score=160.73 Aligned_cols=79 Identities=32% Similarity=0.433 Sum_probs=72.5
Q ss_pred hHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCC
Q 031485 5 AAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDP 84 (159)
Q Consensus 5 ~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp 84 (159)
..+|.+++|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++| | .++|+|||+|||+|+||
T Consensus 36 R~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~-----G-----~~~e~pIh~SNV~l~~~ 105 (121)
T 3j21_U 36 REKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTN-----G-----TEVFYPIHPSNVMIIEL 105 (121)
T ss_dssp HHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSS-----S-----CEEECCBCGGGEEEEEC
T ss_pred HHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecC-----C-----cEEEcccCHHHeEEEcC
Confidence 4689999999999999999999999999999999999999999999998762 2 38999999999999999
Q ss_pred CCCCceeEE
Q 031485 85 VTGKPCKVG 93 (159)
Q Consensus 85 ~~g~~~rV~ 93 (159)
.+++++|+.
T Consensus 106 ~~~d~~R~~ 114 (121)
T 3j21_U 106 NLEDEKRKK 114 (121)
T ss_dssp CCCCHHHHH
T ss_pred ccCCcHHHH
Confidence 999887764
No 8
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.86 E-value=1.1e-22 Score=154.93 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=67.3
Q ss_pred hHhhcchhcccccCCEEEEeecCCCCcE-eeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccC
Q 031485 5 AAEKLIRHWKILRGDNVMIIRGKDKGET-GAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLD 83 (159)
Q Consensus 5 ~~~~~ir~~~i~kGD~V~Vi~G~dKGk~-G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvd 83 (159)
..+|.++.|+|++||+|+||+|+|||++ |+|++|++++++|+|||+|+. +++ | +++|+|||+|||+|+|
T Consensus 39 r~ky~vr~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~----Kp~----G--~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 39 RQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQRE----KAN----G--TTVHVGIHPSKVVITR 108 (145)
T ss_dssp HHC-CC-CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEE----CSS----C--CEEECCBCGGGEEECC
T ss_pred HhhcCccccccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeE----cCC----C--ceEEeccCHHHEEEEc
Confidence 3568899999999999999999999999 999999999999999999982 332 3 6999999999999999
Q ss_pred CCCCCcee
Q 031485 84 PVTGKPCK 91 (159)
Q Consensus 84 p~~g~~~r 91 (159)
|.++++++
T Consensus 109 ~~~~k~~k 116 (145)
T 2zkr_t 109 LKLDKDRK 116 (145)
T ss_dssp -CCCHHHH
T ss_pred CcCCchHH
Confidence 99999875
No 9
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.86 E-value=1.8e-22 Score=150.70 Aligned_cols=74 Identities=30% Similarity=0.400 Sum_probs=67.5
Q ss_pred hHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCC
Q 031485 5 AAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDP 84 (159)
Q Consensus 5 ~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp 84 (159)
..+|.+++++|++||+|+||+|+|||++|+|++|++++++|+|||+|+.+. +| . ++|+|||+|||+|+|+
T Consensus 40 r~ky~vrs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~-----~G---~--~~e~pIh~SNV~i~~~ 109 (127)
T 3u5e_Y 40 RAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKV-----NG---A--SVPINLHPSKLVITKL 109 (127)
T ss_dssp HHHHTCCEEECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEECS-----SS---C--EEECCBCGGGEEEEEC
T ss_pred HHHhCcCcccccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEECC-----CC---c--EEEcccchHHEEEEcc
Confidence 468999999999999999999999999999999999999999999999853 22 2 8899999999999999
Q ss_pred CCCC
Q 031485 85 VTGK 88 (159)
Q Consensus 85 ~~g~ 88 (159)
.+++
T Consensus 110 ~~dk 113 (127)
T 3u5e_Y 110 HLDK 113 (127)
T ss_dssp CCCH
T ss_pred ccCc
Confidence 9864
No 10
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.85 E-value=3.5e-22 Score=152.53 Aligned_cols=74 Identities=31% Similarity=0.366 Sum_probs=68.0
Q ss_pred hHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCC
Q 031485 5 AAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDP 84 (159)
Q Consensus 5 ~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp 84 (159)
..+|.+|+++|++||+|+||+|+|||++|+|++|++++++|+|||+|+.+.| |. ++|+|||+|||+|+||
T Consensus 39 R~ky~vRs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~~-----G~-----~~eapIh~SNV~i~~~ 108 (150)
T 3iz5_Y 39 RHKYNVRSIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVN-----GS-----TVNVGIHPSKVVVTKL 108 (150)
T ss_dssp HTTTTCSEEECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECTT-----SC-----EEECCBCGGGEEEEEC
T ss_pred HHHhCCcccccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeCC-----CC-----EEecccchHHEEEEcc
Confidence 4679999999999999999999999999999999999999999999998752 22 7899999999999999
Q ss_pred CCCC
Q 031485 85 VTGK 88 (159)
Q Consensus 85 ~~g~ 88 (159)
.+++
T Consensus 109 k~dk 112 (150)
T 3iz5_Y 109 KLDK 112 (150)
T ss_dssp CCCS
T ss_pred cCCh
Confidence 9875
No 11
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.85 E-value=3.3e-22 Score=150.45 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=67.8
Q ss_pred hHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCC
Q 031485 5 AAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDP 84 (159)
Q Consensus 5 ~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp 84 (159)
..+|.+|+++|++||+|+||+|+|||++|+|++|++++++|+|||+|+.+. + | .++|+|||+|||+|+||
T Consensus 39 r~ky~vRs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~-----~---G--~~~e~pIh~SNV~i~~~ 108 (135)
T 4a17_S 39 RSKYNVRSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNKL-----N---G--APYQIPLSASQLVLTKL 108 (135)
T ss_dssp HHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEET-----T---T--EEECCCBCGGGEEEEEC
T ss_pred HHHhCCCcccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEcC-----C---C--CEEEcccchHHEEEEcc
Confidence 468999999999999999999999999999999999999999999999864 2 2 28999999999999999
Q ss_pred CCCC
Q 031485 85 VTGK 88 (159)
Q Consensus 85 ~~g~ 88 (159)
.+++
T Consensus 109 k~dk 112 (135)
T 4a17_S 109 KLDK 112 (135)
T ss_dssp CCCH
T ss_pred cCCc
Confidence 9865
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.44 E-value=2.8e-07 Score=59.16 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=33.1
Q ss_pred cccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 13 WKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..+.+||+|.|++|+++|..|.|.+++++++++.|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 457899999999999999999999999998888776
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.72 E-value=3.1e-05 Score=58.27 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=47.2
Q ss_pred cccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceeeeeeCCCCCCCCceEEEeeeccCCCccccCC
Q 031485 13 WKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDP 84 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~Lvdp 84 (159)
..+.+||.|.|++|+++|-.|.|.+++.+++++.|.-.-. |. ..+..|++|+|..++.
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~---------gr-----~tpvel~~~~v~~i~~ 147 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA---------IV-----PIPVTIKGDYVRLISK 147 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC---------SS-----CCEEEEEGGGEEEEEC
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec---------ce-----eEEEEECHHHEEEecc
Confidence 4678999999999999999999999999999988873211 11 4667888899988764
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=4.4e-05 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=30.1
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
...+.+||.|.|++|+++|-.|+|.+++.++-.|.|.
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~ 41 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK 41 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEEC
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEE
Confidence 4567899999999999999999999999753333443
No 15
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.04 E-value=0.00064 Score=52.22 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=32.8
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
...+.+||+|.|+.|+++|-.|.|.+++.+++++.|.
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 3467899999999999999999999999988887664
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.83 E-value=0.003 Score=42.08 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=30.6
Q ss_pred ccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccceee
Q 031485 14 KILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLVK 54 (159)
Q Consensus 14 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~~ 54 (159)
.|+.||.|.||+|+++|..|.|.+|+.. --+++-+.++..
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d-~v~v~SD~t~~E 56 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN-FVILFSDLTMHE 56 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS-CEEEEESSSCSE
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC-EEEEEeCCCCCE
Confidence 4688999999999999999999999733 233445555443
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.68 E-value=0.0023 Score=47.20 Aligned_cols=33 Identities=12% Similarity=0.399 Sum_probs=30.5
Q ss_pred ccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 16 LRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 16 ~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
++|++|.|+.|+++|..|++++++.++..++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 689999999999999999999999997777776
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.11 E-value=0.0067 Score=51.71 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=32.8
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
...+.+||+|.|++|+++|-.|.|.+++.+++++.|.
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 3467899999999999999999999999998888775
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=95.55 E-value=0.0022 Score=52.25 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=0.0
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
...+.+||+|.|++|+++|-.|.|.+++++++++.|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 5678899999999999999999999999988877665
No 20
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=93.47 E-value=0.099 Score=38.48 Aligned_cols=36 Identities=33% Similarity=0.619 Sum_probs=30.8
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccc
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKN 51 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn 51 (159)
+..|=.|.|..|++.|+...|..|.-+ |+|+|+|-.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~ 42 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH 42 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC
Confidence 356777888899999999999999754 799999976
No 21
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=92.51 E-value=0.16 Score=37.77 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=31.6
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccc
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKN 51 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn 51 (159)
+.+|-.|.|..|++.|+...|..|.- .|+|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD-~~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD-QNRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS-SSEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC-CCeEEEeCCC
Confidence 46788899999999999999999975 5799999976
No 22
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=92.12 E-value=0.11 Score=36.30 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=31.3
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccc
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKN 51 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn 51 (159)
+.+|-.|.+++|+|+|+...|+.+. +.+.|+|.|-.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i-D~~~vLV~gp~ 39 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGPK 39 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe-CCCEEEEECCc
Confidence 5789999999999999999999986 56799998853
No 23
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.78 E-value=0.2 Score=33.34 Aligned_cols=33 Identities=36% Similarity=0.474 Sum_probs=26.1
Q ss_pred ccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 16 LRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 16 ~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..|-+|.|..|++||..|.|..+....-+|-++
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~~~~RVELh 51 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATESTARVELH 51 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECSSCEEEEES
T ss_pred cCCCEEEEeccCCCCeEEEEEECCCCeEEEEec
Confidence 468899999999999999999986644444433
No 24
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=90.83 E-value=0.23 Score=37.03 Aligned_cols=35 Identities=31% Similarity=0.615 Sum_probs=30.8
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccCCEEEEecc
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGK 50 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegv 50 (159)
+.+|-.|.+..|++.|+...|..|.- .|+|+|+|-
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD-~~rVLVDGp 49 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIID-QKKVLIDGP 49 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECS-SSEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEec-CCEEEEEcC
Confidence 46888899999999999999999975 589999985
No 25
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=90.39 E-value=0.37 Score=36.19 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=33.0
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccC------CEEEEeccce
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQ------NRVIVEGKNL 52 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~------~~V~Vegvn~ 52 (159)
+.+|=.|.|++|++.|+...|.++.-+. ++++|.|+..
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdr 48 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVER 48 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEE
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEeccc
Confidence 5788889999999999999999998664 8999999754
No 26
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.21 E-value=0.23 Score=33.85 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=30.8
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccCCEEEEeccc
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKN 51 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn 51 (159)
+.+|-.|.+.+|+|+|+...|..+.- .+.|+|.|..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD-~~~vlV~g~~ 39 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIID-KNFVLVTGAG 39 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECS-SSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcC-CCEEEEECCc
Confidence 56899999999999999999999854 4799998853
No 27
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=86.25 E-value=0.91 Score=35.51 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=46.2
Q ss_pred ccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEec---cceeeeeeCCCCCCCCceEEEeeeccCCCccc
Q 031485 14 KILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEG---KNLVKKHIKGGEGHEGGIFTVEAPIHASNVQV 81 (159)
Q Consensus 14 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Veg---vn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~L 81 (159)
.|.+|-.|.|++|.++|+...+++... ++.++|-| +|-.. .+ .-++.+++....-|++|+|.+
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~vp--lr--rvn~~~vi~TstkvDis~vki 109 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGVP--LK--RVNQAYTLSTSTKVDLTGVNT 109 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSCC--SE--EECGGGEEEEEEECCCTTCCG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCCc--eE--EEeeeeEEeeeeEeecccccc
Confidence 477999999999999999999998864 57888887 22110 00 112357777778888888876
No 28
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.45 E-value=1.3 Score=36.29 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=32.7
Q ss_pred chhcccccCCEEEEeecCCCCcEeeEEEEEccC---CEEEEec
Q 031485 10 IRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQ---NRVIVEG 49 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~---~~V~Veg 49 (159)
..+.+|..|-.++|+.|.+-|.+|+|.++.+.. +.|.|++
T Consensus 170 ~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (265)
T 3iz6_D 170 VDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212 (265)
T ss_dssp EEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECC
T ss_pred eeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 456788899999999999999999999998743 4555553
No 29
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=82.75 E-value=0.7 Score=36.87 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=46.8
Q ss_pred ccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEecc---ceeeeeeCCCCCCCCceEEEeeeccCCCccc
Q 031485 14 KILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGK---NLVKKHIKGGEGHEGGIFTVEAPIHASNVQV 81 (159)
Q Consensus 14 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegv---n~~~~~~k~~~~~~g~i~~~e~pI~~SnV~L 81 (159)
.|.+|..+.++.|.++||.-.++.+. ++|.++|.|- |-+..+ .-.+..++....-|++|+|.+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL-~sgllLVtGP~~lNgVplr----R~~qk~viaTstkIdIs~Vki 139 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQL-QSGLLLITGPFKINGVPIR----RVNQAYVIATSTKVDISKVNV 139 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEES-SSSSEEECCCCSSSCCCCE----EESSSSCEECSCCCSCSSCCC
T ss_pred cccCCCEEEEeccccCCcEEEEEEec-CCCeEEEcCCccccCCccE----EechhhEEecceEeecCcccc
Confidence 46799999999999999999999986 5789999873 322211 112345667777789999987
No 30
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=81.42 E-value=1.6 Score=28.75 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=29.7
Q ss_pred cccCCEEEEeecC--CCCcEeeEEEEEccC----CEEEEeccce
Q 031485 15 ILRGDNVMIIRGK--DKGETGAIKRVIRSQ----NRVIVEGKNL 52 (159)
Q Consensus 15 i~kGD~V~Vi~G~--dKGk~G~V~~V~~~~----~~V~Vegvn~ 52 (159)
|.+|+.|.|++=. .-+.+|+|.+|+... -.|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 6899999999864 578999999999864 2445577765
No 31
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.67 E-value=1.4 Score=35.69 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=34.3
Q ss_pred cchhcccccCCEEEEeecCCCCcEeeEEEEEcc----CCEEEEecc
Q 031485 9 LIRHWKILRGDNVMIIRGKDKGETGAIKRVIRS----QNRVIVEGK 50 (159)
Q Consensus 9 ~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~----~~~V~Vegv 50 (159)
-..+.++..|-.++|+.|++-|.+|+|.++.+. .+.|.|++-
T Consensus 173 I~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~ 218 (243)
T 3j20_E 173 ILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDE 218 (243)
T ss_dssp EEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEES
T ss_pred eeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcC
Confidence 345678889999999999999999999998753 367777753
No 32
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=79.07 E-value=3.3 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=32.9
Q ss_pred cchhcccccCCEEEEeecCCCCcEeeEEEEEccC---CEEEEec
Q 031485 9 LIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQ---NRVIVEG 49 (159)
Q Consensus 9 ~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~---~~V~Veg 49 (159)
-....+|..|-.++|+.|.+-|.+|+|.++.+.. +.|.|++
T Consensus 171 I~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd 214 (260)
T 2xzm_W 171 IENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKD 214 (260)
T ss_dssp EECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEEC
T ss_pred eeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEe
Confidence 4456788999999999999999999999866543 5666664
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=78.56 E-value=1.3 Score=36.26 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=31.8
Q ss_pred chhcccccCCEEEEeecCCCCcEeeEEEEEccC---CEEEEec
Q 031485 10 IRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQ---NRVIVEG 49 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~---~~V~Veg 49 (159)
..+.+|..|-.++|+.|.+-|.+|+|.++.+.. +.|.|++
T Consensus 170 ~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (261)
T 3u5c_E 170 TDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKD 212 (261)
T ss_dssp EEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEEC
T ss_pred eeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 456788889999999999999999999988643 4566654
No 34
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=77.21 E-value=0.0061 Score=45.65 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=21.5
Q ss_pred cccccCCEEEEeecCCCCcEeeEEEEEccC
Q 031485 13 WKILRGDNVMIIRGKDKGETGAIKRVIRSQ 42 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~ 42 (159)
..+.+||+|.|++|+++|-.|.|.+++.++
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 457899999999999999999999998765
No 35
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=76.55 E-value=2.1 Score=34.03 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.2
Q ss_pred cchhcccccCCEEEEeecCCCCcEeeEEEEEccC----CEEEEe
Q 031485 9 LIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQ----NRVIVE 48 (159)
Q Consensus 9 ~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~----~~V~Ve 48 (159)
-....++..|-.++|+.|+.-|.+|+|.++.+.. +.|.|+
T Consensus 133 I~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 133 ISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EEEEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred eeeEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 3456788999999999999999999999997632 567776
No 36
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=75.74 E-value=1.7 Score=33.54 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=45.8
Q ss_pred ccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEec---cceeeeeeCCCCCCCCceEEEeeeccCCCccc
Q 031485 14 KILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEG---KNLVKKHIKGGEGHEGGIFTVEAPIHASNVQV 81 (159)
Q Consensus 14 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Veg---vn~~~~~~k~~~~~~g~i~~~e~pI~~SnV~L 81 (159)
.|.+|..+.+++|.++||.-.++... .++-++|-| +|-+... .-.+..++....-|++|+|.+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql-~sglllVTGP~~lNgvplr----R~~q~~vIaTstkidis~vki 98 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHL-EDNTLLISGPFKVNGVPLR----RVNARYVIATSTKVSVEGVNV 98 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEES-SSSSEEEECCCSSSCCCCE----EESSSSCEECSCCCSSSSCCC
T ss_pred cCCCCCEEEEeccccCCCEEEEEEec-CCCeEEEecCceecCCcce----eeecceEEeeeeeeecccccc
Confidence 46799999999999999999999886 467788876 2322110 112345677777889999987
No 37
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=72.10 E-value=13 Score=24.01 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=34.7
Q ss_pred cccCCEEEEeecC--CCCcEeeEEEEEccCCEEEEeccceee
Q 031485 15 ILRGDNVMIIRGK--DKGETGAIKRVIRSQNRVIVEGKNLVK 54 (159)
Q Consensus 15 i~kGD~V~Vi~G~--dKGk~G~V~~V~~~~~~V~Vegvn~~~ 54 (159)
|.+|-.|.|+.-. +-|-+|.|.+|-..+-.|+.||-|--|
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDK 43 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCcee
Confidence 6899999999764 689999999999988899999977644
No 38
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=65.77 E-value=6.8 Score=28.60 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=22.2
Q ss_pred hcccccCCEEEEeecC----------CCCcEeeEEEEE
Q 031485 12 HWKILRGDNVMIIRGK----------DKGETGAIKRVI 39 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~----------dKGk~G~V~~V~ 39 (159)
.-.|..||+|.|..-. -+||+|+|..+.
T Consensus 34 ~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp SCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 4568999999997543 489999998765
No 39
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=54.74 E-value=12 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.3
Q ss_pred hcccccCCEEEEeecC----------CCCcEeeEEEEE
Q 031485 12 HWKILRGDNVMIIRGK----------DKGETGAIKRVI 39 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~----------dKGk~G~V~~V~ 39 (159)
.-.|.+||+|.|..-. -+||+|+|..+.
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 4568999999997543 489999999775
No 40
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=54.55 E-value=12 Score=29.56 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=21.4
Q ss_pred cccccCCEEEEeecC----------CCCcEeeEEEEE
Q 031485 13 WKILRGDNVMIIRGK----------DKGETGAIKRVI 39 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~----------dKGk~G~V~~V~ 39 (159)
-+|.+||+|.|..-. -+||+|+|..+.
T Consensus 129 ~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 129 ARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 568999999996542 489999998764
No 41
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=53.68 E-value=13 Score=29.65 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.5
Q ss_pred cccccCCEEEEeecC----------CCCcEeeEEEEE
Q 031485 13 WKILRGDNVMIIRGK----------DKGETGAIKRVI 39 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~----------dKGk~G~V~~V~ 39 (159)
-+|.+||+|.|..-. -+||+|+|..+.
T Consensus 140 ~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 140 PRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 568999999996542 489999998774
No 42
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=49.48 E-value=17 Score=21.31 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=13.9
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 16 SELPLKKGDVIYITREE 32 (58)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 46788999999998754
No 43
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=48.40 E-value=15 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=33.5
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEE
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~V 47 (159)
..++|..+=++++.||.|.|.-|...=-.++|.++.++.-.+.+
T Consensus 23 ~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 23 DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp HHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred HHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 35677778899999999999988754446889998776555444
No 44
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=48.22 E-value=27 Score=25.19 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=20.0
Q ss_pred cchhcccccCCEEEEeecCC-CCcEeeEEEEE
Q 031485 9 LIRHWKILRGDNVMIIRGKD-KGETGAIKRVI 39 (159)
Q Consensus 9 ~ir~~~i~kGD~V~Vi~G~d-KGk~G~V~~V~ 39 (159)
.+..-.+++||.|.+..|.. .=..-+|.+|.
T Consensus 86 ~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 86 FVFADRIEEKNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp EEEGGGCCTTCEEEEECTTTCCEEEEEEEEEE
T ss_pred EEEHHHCcCCCEEEEecCCCCCEEEEEEEEEE
Confidence 45667889999999998732 11234555553
No 45
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=47.89 E-value=11 Score=23.53 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.8
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|++||.|.|+.-.
T Consensus 18 ~eLsf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 18 GELGFKEGDIITLTNQI 34 (68)
T ss_dssp TBCCBCTTCEEEEEEES
T ss_pred CccCCCCCCEEEEEEec
Confidence 36788999999999843
No 46
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=47.83 E-value=28 Score=28.49 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=29.4
Q ss_pred ccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 16 LRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 16 ~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..|.+..|++|.-||..|.|+------+.|+|+
T Consensus 85 CiGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 85 CIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ecCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 369999999999999999999877777888887
No 47
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=47.35 E-value=17 Score=28.98 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=33.4
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..+.|..+=++++.||.|.|.-|...--.++|.++.++.-.+.+.
T Consensus 25 ~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 25 DAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp HHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred HHHHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEE
Confidence 356777788999999999998886433557888887766555444
No 48
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=47.28 E-value=17 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=20.8
Q ss_pred cccccCCEEEEeecC----------CCCcEeeEEEEE
Q 031485 13 WKILRGDNVMIIRGK----------DKGETGAIKRVI 39 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~----------dKGk~G~V~~V~ 39 (159)
-.|..||+|.|..=. -+|++|+|.++.
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~ 153 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGIS 153 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEe
Confidence 358899999997532 388999998773
No 49
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=47.09 E-value=21 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.366 Sum_probs=19.3
Q ss_pred ccCCEEEEeec--------------CCCCcEeeEEEEEcc
Q 031485 16 LRGDNVMIIRG--------------KDKGETGAIKRVIRS 41 (159)
Q Consensus 16 ~kGD~V~Vi~G--------------~dKGk~G~V~~V~~~ 41 (159)
+.||+|.|.+. ..+|..|+|.++...
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~~ 41 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTE 41 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSE
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEee
Confidence 57999999764 137888888887644
No 50
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=46.74 E-value=12 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.8
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+++||.|.|+.-.
T Consensus 19 ~eLs~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRVE 35 (59)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 46788999999998743
No 51
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=46.01 E-value=13 Score=21.99 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.8
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+.+||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 17 GELAFKRGDVITLINKD 33 (58)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CCcCCCCCCEEEEEEec
Confidence 46788999999999753
No 52
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=45.33 E-value=30 Score=22.85 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=27.5
Q ss_pred cccCCEEEEeecC--CCCcEeeEEEEEcc---CCEEEE--eccc
Q 031485 15 ILRGDNVMIIRGK--DKGETGAIKRVIRS---QNRVIV--EGKN 51 (159)
Q Consensus 15 i~kGD~V~Vi~G~--dKGk~G~V~~V~~~---~~~V~V--egvn 51 (159)
|.+||.|.|++=. .-..+|+|.+|+.. +.-|+| +.+|
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVN 44 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVN 44 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeec
Confidence 5789999999853 46789999999986 344555 4444
No 53
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=44.33 E-value=22 Score=28.44 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=32.5
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEE
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~V 47 (159)
..+.|..+=++++.||.|.|.-|...--.++|.++.++.-.+.+
T Consensus 26 ~~~~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i 69 (268)
T 1vhk_A 26 EEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLV 69 (268)
T ss_dssp HHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 35667778899999999999988755556788888765444433
No 54
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=44.18 E-value=14 Score=21.83 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.4
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+.+||.+.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 16 DELGFRSGEVVEVLDS 31 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEE
Confidence 4678899999999874
No 55
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=43.76 E-value=18 Score=21.69 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=13.2
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 20 EDLEFQEGDIILVLSK 35 (62)
T ss_dssp SBCCBCSSCEEEEEEE
T ss_pred CCccCCCCCEEEEEEe
Confidence 3578899999999874
No 56
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=43.61 E-value=14 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=13.9
Q ss_pred chhcccccCCEEEEeec
Q 031485 10 IRHWKILRGDNVMIIRG 26 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G 26 (159)
-..+.+++||.|.|+.-
T Consensus 17 ~~eLsf~~Gd~i~v~~~ 33 (67)
T 2bzy_A 17 KTALALEVGDIVKVTRM 33 (67)
T ss_dssp TTBCCBCTTCEEEEEEE
T ss_pred CCccccCCCCEEEEEEe
Confidence 44678999999999874
No 57
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=42.91 E-value=21 Score=28.44 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=32.4
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEE
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~V 47 (159)
..++|..+-++++.||.|.+.-|...--.++|.++.++.-.+.+
T Consensus 22 ~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 65 (257)
T 3kw2_A 22 DEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSV 65 (257)
T ss_dssp HHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred HHHHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEE
Confidence 35667778899999999999988733345788888776544444
No 58
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.46 E-value=17 Score=22.95 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred chhcccccCCEEEEee
Q 031485 10 IRHWKILRGDNVMIIR 25 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~ 25 (159)
-..+.|++||.|.|+.
T Consensus 28 ~~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 28 KGRLALRAGDVVMVYG 43 (75)
T ss_dssp CCBCCBCTTCEEEEES
T ss_pred CCcceECCCCEEEEeE
Confidence 3467789999999985
No 59
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=42.33 E-value=15 Score=22.62 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=14.2
Q ss_pred hhcccccCCEEEEeecCC
Q 031485 11 RHWKILRGDNVMIIRGKD 28 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~d 28 (159)
..+.|++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (65)
T 2nwm_A 16 KELTLQKGDIVYIHKEVD 33 (65)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CccCCcCCCEEEEEEecC
Confidence 357889999999987543
No 60
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=41.84 E-value=23 Score=20.77 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=13.8
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
....+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 16 DEITITPGDKISLVARD 32 (58)
T ss_dssp TBCCBCTTCCEEEEECC
T ss_pred CcccCCCCCEEEEeEcC
Confidence 36788999999999754
No 61
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=41.81 E-value=16 Score=21.50 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.3
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+.+||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 17 GELGFRRGDFIHVMDN 32 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEc
Confidence 3678899999999974
No 62
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=41.77 E-value=16 Score=22.06 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.6
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|.+||.+.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (64)
T 2ak5_A 21 DELSFSKGDVIHVTRVE 37 (64)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CcccCCCCCEEEEeEec
Confidence 46778999999998743
No 63
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=41.58 E-value=2.1 Score=31.71 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=32.3
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccC------CEEEEeccceee
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQ------NRVIVEGKNLVK 54 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~------~~V~Vegvn~~~ 54 (159)
+.+|=.|.|++|.+.|+...|++..-+. +.++|.|+....
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP 50 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYP 50 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCC
Confidence 5789999999999999999999875443 378999976543
No 64
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=40.83 E-value=17 Score=21.72 Aligned_cols=16 Identities=13% Similarity=0.410 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 21 RELSFKKGASLLLYHR 36 (60)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3578899999999874
No 65
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=40.78 E-value=16 Score=22.86 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=12.6
Q ss_pred hcccccCCEEEEeec
Q 031485 12 HWKILRGDNVMIIRG 26 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G 26 (159)
.+.|.+||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 26 HLNFSKHDIITVLEQ 40 (74)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEec
Confidence 578899999999873
No 66
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.78 E-value=16 Score=23.07 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.0
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (78)
T 2yuo_A 22 DELGFRKNDIITIIS 36 (78)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CCccCCCCCEEEEEE
Confidence 367899999999997
No 67
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=40.43 E-value=25 Score=27.70 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=32.4
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..+.|. +-++++.||.|.|.-|...--.++|.++.++.-.+.+.
T Consensus 31 ~~~~Hl-~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~ 74 (234)
T 1z85_A 31 REAHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIV 74 (234)
T ss_dssp HHHHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred HHHHHH-HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEE
Confidence 356677 88999999999999887544557888887765554443
No 68
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=40.43 E-value=17 Score=21.62 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.7
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+.+||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 20 DELSFNANDIIDIIKED 36 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 46788999999998743
No 69
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.32 E-value=20 Score=21.96 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 22 DELYFEEGDIIYITDM 37 (68)
T ss_dssp TBCCCCSSCEEEEEEC
T ss_pred CcccCCCCCEEEEEEc
Confidence 4678899999999864
No 70
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=40.15 E-value=22 Score=21.66 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.3
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 22 KELPLQKGDIVYIYKQ 37 (68)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCccCCCCCEEEEeEe
Confidence 4678899999999874
No 71
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=40.06 E-value=17 Score=22.69 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=13.6
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+++||.|.|+.-.
T Consensus 28 ~eLs~~~Gd~i~v~~~~ 44 (73)
T 3c0c_A 28 GELGFREGDLITLTNQI 44 (73)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCccCcCCCEEEEEEec
Confidence 36788999999998743
No 72
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=39.97 E-value=18 Score=21.62 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=13.6
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
....+.+||.|.|+.-.
T Consensus 19 ~eLs~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 19 LELNFKAGDVIFLLSRI 35 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCccCCCCCEEEEEEeC
Confidence 35788999999998743
No 73
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=39.86 E-value=28 Score=21.24 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.0
Q ss_pred chhcccccCCEEEEeecC
Q 031485 10 IRHWKILRGDNVMIIRGK 27 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G~ 27 (159)
-..+.|++||.|.|+.-.
T Consensus 17 ~~eLs~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 17 SSELPLKKGDIVFISRDE 34 (69)
T ss_dssp TTBCCBCTTCEEEEEEEC
T ss_pred CCcccCCCCCEEEEEEec
Confidence 345778999999998743
No 74
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=39.47 E-value=28 Score=20.50 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=13.0
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 18 DELSFKAGDELTKLGE 33 (60)
T ss_dssp SBCCBCTTCEEEECSC
T ss_pred CcccCCCCCEEEEEEc
Confidence 3677899999999863
No 75
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=39.47 E-value=14 Score=22.77 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=13.5
Q ss_pred chhcccccCCEEEEeec
Q 031485 10 IRHWKILRGDNVMIIRG 26 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G 26 (159)
-..+.+++||.|.|+.-
T Consensus 22 ~~eLs~~~Gd~i~v~~~ 38 (67)
T 2eyx_A 22 KTALALEVGELVKVTKI 38 (67)
T ss_dssp SSBCCBCSSEEEEEEEE
T ss_pred CCccccCCCCEEEEEEe
Confidence 34678899999999864
No 76
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=39.19 E-value=33 Score=26.71 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=32.8
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..++|..+-++++.||.|.|.-|.. --.++|.++.+ .-.+.+.
T Consensus 18 ~~~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 18 RETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp HHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEE
T ss_pred HHHHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEE
Confidence 3567777889999999999998875 45578888877 6555443
No 77
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=39.10 E-value=22 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=13.5
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|++||.|.|+.=.
T Consensus 28 ~eLs~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 28 NELSVSANQKLKILEFK 44 (79)
T ss_dssp SBCCBCTTCEEEEEESC
T ss_pred CccCCCCCCEEEEEECC
Confidence 35788999999998743
No 78
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=38.97 E-value=25 Score=21.05 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=13.3
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 21 GDLGFEKGEQLRILEQ 36 (62)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEc
Confidence 3577899999999974
No 79
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=38.92 E-value=22 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=19.2
Q ss_pred hcccccCCEEEEeecC----------CCCcEeeEE
Q 031485 12 HWKILRGDNVMIIRGK----------DKGETGAIK 36 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~----------dKGk~G~V~ 36 (159)
.-.|.+||+|.|..-. -+||+|+|+
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~ 154 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTIS 154 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEE
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEE
Confidence 3468899999997543 388999994
No 80
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=38.73 E-value=35 Score=19.67 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.8
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+++||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 15 DEISIDPGDIITVIRGD 31 (54)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEec
Confidence 46788999999998744
No 81
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.39 E-value=19 Score=22.41 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=12.5
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 24 ~eLs~~~Gd~i~v~~ 38 (72)
T 2dl8_A 24 RELSFKKGASLLLYQ 38 (72)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CEeccCCCCEEEEEe
Confidence 357889999999987
No 82
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.68 E-value=24 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.2
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (81)
T 2ysq_A 25 RELAFKAGDVIKVLDA 40 (81)
T ss_dssp SSCCCCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEE
Confidence 3578899999999874
No 83
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=36.61 E-value=27 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.5
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|.+||.|.|+.
T Consensus 26 ~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 26 QDLPFCKGDVLTIVA 40 (71)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEeE
Confidence 357789999999987
No 84
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=35.41 E-value=41 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=22.0
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccC
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQ 42 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~ 42 (159)
...|.+||.|.|---++-...|.|..+.+..
T Consensus 68 ~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 68 KVWVNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp HSCCCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred CCcCCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 5667799999986544334578888877643
No 85
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=35.29 E-value=28 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=13.8
Q ss_pred chhcccccCCEEEEeec
Q 031485 10 IRHWKILRGDNVMIIRG 26 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G 26 (159)
-..+.|++||.|.|+.-
T Consensus 25 ~~eLs~~~Gd~i~v~~~ 41 (73)
T 2ebp_A 25 TDSLKLKKGDIIDIISK 41 (73)
T ss_dssp CSBCCBCSSCEEEEEEC
T ss_pred CCccCCCCCCEEEEEEe
Confidence 34678899999999874
No 86
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=35.14 E-value=29 Score=21.34 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=12.4
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~ 37 (69)
T 1uhf_A 23 GDLTFTEGEEILVTQ 37 (69)
T ss_dssp SBCCBCTTCEEEECE
T ss_pred CccCCCCCCEEEEEE
Confidence 457789999999886
No 87
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=35.10 E-value=24 Score=21.00 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=12.6
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.+.+||.|.|+.
T Consensus 20 ~eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 20 NTLSITKGEKLRVLG 34 (63)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 357889999999987
No 88
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=34.94 E-value=39 Score=21.19 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.6
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 33 ~eLsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKA 48 (78)
T ss_dssp CCCCBCTTCEEEEEEC
T ss_pred CccCCCCCCEEEEEEc
Confidence 5677899999999985
No 89
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.92 E-value=67 Score=22.16 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=25.5
Q ss_pred ccccCCEEEEee------c----CCCCcEeeEEEEEccCCEEEEe
Q 031485 14 KILRGDNVMIIR------G----KDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 14 ~i~kGD~V~Vi~------G----~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
.+++||.|-|.- | .+-|+.|.|..|....-.|.|.
T Consensus 34 ~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn 78 (97)
T 3j21_R 34 EFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIK 78 (97)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred HhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEE
Confidence 457999998642 2 1578999999998776666664
No 90
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=34.85 E-value=23 Score=22.05 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.3
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 17 DELTIKEGDIVTLINK 32 (69)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CccccCCCCEEEEEEc
Confidence 4678999999999864
No 91
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=34.72 E-value=2 Score=31.86 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=31.6
Q ss_pred cccCCEEEEeecCCCCcEeeEEEEEccC------CEEEEecccee
Q 031485 15 ILRGDNVMIIRGKDKGETGAIKRVIRSQ------NRVIVEGKNLV 53 (159)
Q Consensus 15 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~------~~V~Vegvn~~ 53 (159)
+.+|=.|.|++|.+.|+...|++..-+. +.++|.|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdry 49 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKY 49 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccC
Confidence 5789899999999999999999876443 37889987654
No 92
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=34.62 E-value=24 Score=21.18 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=12.9
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (65)
T 1w1f_A 22 DDLSFKKGEKMKVLEE 37 (65)
T ss_dssp SCCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEEEc
Confidence 3577899999999873
No 93
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=34.50 E-value=44 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (57)
T 1cka_A 16 EDLPFKKGDILRIRDK 31 (57)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEe
Confidence 3577899999999874
No 94
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=34.21 E-value=42 Score=20.43 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.7
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.+.|+.-
T Consensus 25 ~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 25 PFLRLNPGDIVELTKA 40 (70)
T ss_dssp CBCCBCTTCEEEEEEC
T ss_pred CcCCcCCCCEEEEEeC
Confidence 3678999999999985
No 95
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=34.06 E-value=31 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=17.8
Q ss_pred ccccCCEEEEeecCCCCcEeeEEEEEc
Q 031485 14 KILRGDNVMIIRGKDKGETGAIKRVIR 40 (159)
Q Consensus 14 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~ 40 (159)
.|..||+|.|..| ++.|+|.-|=+
T Consensus 5 ~i~vG~Rv~v~~~---~~~G~VryvG~ 28 (84)
T 4b6m_A 5 TIHVGDRCLCRPG---DRLGSVRFVGR 28 (84)
T ss_dssp CCCTTCEEEETTT---TEEEEEEEEEE
T ss_pred CcccCCEEEEcCC---CeEEEEEEEec
Confidence 4678999998544 46788887754
No 96
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.95 E-value=21 Score=22.46 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.9
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (76)
T 2epd_A 25 QELSFRRGDVLRLHER 40 (76)
T ss_dssp TBCEECTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 4577899999999874
No 97
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=33.43 E-value=36 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=18.8
Q ss_pred cccccCCEEEEe-ecCCCCcEeeEEEEE
Q 031485 13 WKILRGDNVMII-RGKDKGETGAIKRVI 39 (159)
Q Consensus 13 ~~i~kGD~V~Vi-~G~dKGk~G~V~~V~ 39 (159)
-.|..||+|.|. .|...+..|+|.-|=
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG 33 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRG 33 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEEC
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeC
Confidence 357889999987 343345778887664
No 98
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=33.25 E-value=64 Score=22.22 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.8
Q ss_pred cccCCEEEEee------c----CCCCcEeeEEEEEccCCEEEEec
Q 031485 15 ILRGDNVMIIR------G----KDKGETGAIKRVIRSQNRVIVEG 49 (159)
Q Consensus 15 i~kGD~V~Vi~------G----~dKGk~G~V~~V~~~~~~V~Veg 49 (159)
+++||.|-|.- | .+-|+.|.|..+....-.|.|..
T Consensus 34 yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk 78 (96)
T 1vq8_Q 34 FDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVD 78 (96)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE
T ss_pred cCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEee
Confidence 57899998762 3 25789999999988777777753
No 99
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=32.82 E-value=21 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.0
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (65)
T 2fei_A 16 DELELKVGDIIDINEE 31 (65)
T ss_dssp TBCCCCTTCEEECCCC
T ss_pred CccCCCCCCEEEEEEe
Confidence 4678899999999863
No 100
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.62 E-value=27 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.7
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|.+||.|.|+.
T Consensus 23 ~eLsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 23 SLLSFHRGDLIKLLP 37 (85)
T ss_dssp SBCCBCTTCEEEECC
T ss_pred CCccCcCCCEEEEEE
Confidence 357789999999986
No 101
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=32.30 E-value=35 Score=25.66 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=23.7
Q ss_pred ccccCCEEEEee------c----CCCCcEeeEEEEEccCCEEEEe
Q 031485 14 KILRGDNVMIIR------G----KDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 14 ~i~kGD~V~Vi~------G----~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
.+++||.|-|.- | .+-|+.|.|..|....-.|+|+
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVn 77 (157)
T 4a17_P 33 TYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVH 77 (157)
T ss_dssp CCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEE
T ss_pred HhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEE
Confidence 457999998642 2 2578999999876554445543
No 102
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=32.27 E-value=27 Score=21.60 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.2
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|.+||.|.|+.-
T Consensus 24 ~eLs~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 24 DELTIKEGDIVTLINK 39 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CeeeECCCCEEEEEEC
Confidence 3578899999999874
No 103
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=31.95 E-value=31 Score=26.90 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=29.9
Q ss_pred HhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEE
Q 031485 4 KAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47 (159)
Q Consensus 4 ~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~V 47 (159)
..++|. +-++++.||.|.| -|...--.++|.++.++.-.+.+
T Consensus 19 ~~~~Hl-~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i 60 (229)
T 2egv_A 19 GEVKHF-RVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEI 60 (229)
T ss_dssp HHHHHH-HHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEE
T ss_pred HHHHHH-HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEE
Confidence 356777 8899999999999 88644445788888665443333
No 104
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=31.67 E-value=36 Score=21.36 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.9
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (73)
T 2lcs_A 20 NELRLAEGDIVFISYK 35 (73)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCcCCCEEEEEEE
Confidence 4677899999999863
No 105
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=28 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=13.3
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 23 ~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 23 DELSFPEGAIIRILNK 38 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEC
Confidence 4578899999999974
No 106
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.54 E-value=34 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=14.6
Q ss_pred chhcccccCCEEEEeecCC
Q 031485 10 IRHWKILRGDNVMIIRGKD 28 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G~d 28 (159)
-..+.|++||.|.|+.-.+
T Consensus 32 ~~eLsf~~Gd~i~v~~~~~ 50 (88)
T 2dbk_A 32 KTALALEVGDIVKVTRMNI 50 (88)
T ss_dssp SSBCCBCTTCEEEEEEECT
T ss_pred CCcccCCCCCEEEEEEecC
Confidence 3457899999999987533
No 107
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.30 E-value=25 Score=21.52 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=12.9
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 22 EELQVMPGNIVFVLKK 37 (68)
T ss_dssp SSCCCCTTCEEEECEE
T ss_pred CCCCCCCCCEEEEEEe
Confidence 3577899999999863
No 108
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.05 E-value=43 Score=21.08 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.5
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|++||.|.|+.-.
T Consensus 32 ~eLsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKT 48 (80)
T ss_dssp TBCEECTTCEEEEEECC
T ss_pred CeeeEcCCCEEEEeECc
Confidence 35778999999998754
No 109
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=31.00 E-value=40 Score=26.90 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.0
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEc
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIR 40 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~ 40 (159)
.-+++.||.|.+ -|..|.|.++.-
T Consensus 127 ~~pf~vGD~I~i-----~g~~G~V~~I~l 150 (286)
T 2vv5_A 127 FRPFRAGEYVDL-----GGVAGTVLSVQI 150 (286)
T ss_dssp TCSSCTTCEEES-----SSCEEEEEEECS
T ss_pred cCCccCCCEEEE-----CCEEEEEEEEEe
Confidence 346899999996 268899998864
No 110
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=30.95 E-value=46 Score=20.32 Aligned_cols=15 Identities=0% Similarity=-0.026 Sum_probs=12.6
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 22 ~eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 22 YEISFEQNEILQVSD 36 (70)
T ss_dssp TBCCBCTTCEEEEEC
T ss_pred CcccCCCCCEEEEEE
Confidence 367899999999975
No 111
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=30.52 E-value=33 Score=20.28 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=13.0
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 16 SELSVMKDDVLEILDD 31 (60)
T ss_dssp TBCCBCTTCEEEECGG
T ss_pred CcccCCCCCEEEEEEc
Confidence 3577899999999873
No 112
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.47 E-value=29 Score=21.93 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=12.5
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 32 ~eLsf~~Gd~i~Vl~ 46 (72)
T 2l0a_A 32 NELTFKAGEIITVLD 46 (72)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 357789999999986
No 113
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=30.39 E-value=54 Score=19.93 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 18 ~eLsf~~Gd~i~v~~~ 33 (65)
T 1b07_A 18 EDLPFKKGDILRIRDK 33 (65)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CccCCcCCCEEEEEEe
Confidence 3577899999999874
No 114
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.20 E-value=53 Score=20.41 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=13.0
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (77)
T 2enm_A 25 NELTVTEGEIITVTNP 40 (77)
T ss_dssp SBCCCCTTCEEEEEES
T ss_pred CeecCCCCCEEEEeEc
Confidence 4677899999999874
No 115
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=29.98 E-value=52 Score=19.96 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 21 DELTIKSGDKVYILDD 36 (71)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CcccCCCCCEEEEEEC
Confidence 3577899999999873
No 116
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=29.70 E-value=34 Score=20.02 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.6
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.+++||.|.|+.
T Consensus 16 ~eLs~~~Gd~i~v~~ 30 (59)
T 1yn8_A 16 NELRLAEGDIVFISY 30 (59)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 467889999999986
No 117
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=29.69 E-value=21 Score=22.17 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.7
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dbm_A 22 GELGFKEGDIITLTNQI 38 (73)
T ss_dssp TCCCBCTTCEEECCBCS
T ss_pred CCccCCCCCEEEEEEec
Confidence 36788999999998743
No 118
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.63 E-value=25 Score=21.55 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|.+||.|.|+.-
T Consensus 23 ~eLs~~~Gd~i~v~~~ 38 (70)
T 2ega_A 23 SELSLQAGEVVDVIEK 38 (70)
T ss_dssp SSCCCCTTCBCEEEEE
T ss_pred CcccCCCCCEEEEEEc
Confidence 4577899999999874
No 119
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=29.33 E-value=40 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=18.6
Q ss_pred cccccCCEEEEeecCCCCcEeeEEEEEc
Q 031485 13 WKILRGDNVMIIRGKDKGETGAIKRVIR 40 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~ 40 (159)
-+++.||.|++ -|..|.|.++.-
T Consensus 127 ~pf~vGD~I~i-----~~~~G~V~~I~l 149 (285)
T 3udc_A 127 DQFSVGDYVTI-----NGISGTVEEIGL 149 (285)
T ss_dssp TSCCTTCEEEE-----TTEEEEEEEECS
T ss_pred CCccCCCEEEE-----CCEEEEEEEeee
Confidence 46899999998 367899988863
No 120
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.28 E-value=31 Score=21.78 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=12.9
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (79)
T 1x69_A 32 DEISFDPDDIITNIEM 47 (79)
T ss_dssp SBCCCCTTCEEEEEEE
T ss_pred CCcCcCCCCEEEEeEe
Confidence 3577899999999864
No 121
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=29.05 E-value=44 Score=25.99 Aligned_cols=40 Identities=23% Similarity=0.474 Sum_probs=28.8
Q ss_pred cchhcccccCCEEEEeecC------------CCCcEeeEEEEEccCCEEEEec
Q 031485 9 LIRHWKILRGDNVMIIRGK------------DKGETGAIKRVIRSQNRVIVEG 49 (159)
Q Consensus 9 ~ir~~~i~kGD~V~Vi~G~------------dKGk~G~V~~V~~~~~~V~Veg 49 (159)
....|-|++||.|.|+... .-|..|...+|.-.+++ +|.|
T Consensus 135 L~~~~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgk-iv~g 186 (219)
T 3tee_A 135 IRQAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQ-IVSG 186 (219)
T ss_dssp EEECCSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSC-EEEE
T ss_pred cccccEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCC-EEEE
Confidence 3456889999999998653 47788888888665555 4454
No 122
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=28.93 E-value=32 Score=21.95 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=12.5
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 40 ~eLs~~~Gd~i~v~~~ 55 (86)
T 2oi3_A 40 EDLSFQKGDQMVVLEE 55 (86)
T ss_dssp SCCCCCTTCEEEEEEE
T ss_pred CcCcCCCCCEEEEEEc
Confidence 3577889999998863
No 123
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=28.87 E-value=1e+02 Score=20.50 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=28.8
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
.-.|.+|.+|.++.-...--+++|+.++...+++.|.
T Consensus 17 ~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~VH 53 (88)
T 2eqm_A 17 GITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVH 53 (88)
T ss_dssp SCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEEE
Confidence 4568899999999755556789999888877776663
No 124
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=28.68 E-value=1e+02 Score=18.87 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=25.1
Q ss_pred cccccCCEEEEee-cCCCCcEeeEEEEEccCCEEEEe
Q 031485 13 WKILRGDNVMIIR-GKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 13 ~~i~kGD~V~Vi~-G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
..+++||.+...= ...+=-.++|++|..+.+.+.|.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~ 43 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAIT 43 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 4568999999884 33333459999999866665553
No 125
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=28.67 E-value=22 Score=22.29 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.2
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (76)
T 1ujy_A 25 DELSVCKGDIIYVTRV 40 (76)
T ss_dssp TSCCBCSSCCEEESSC
T ss_pred CcccCCCCCEEEEEEe
Confidence 3678899999999864
No 126
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.41 E-value=33 Score=20.97 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=12.9
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 22 DELTIKEGDIVTLINK 37 (70)
T ss_dssp TBCCCCTTEEEEEEEC
T ss_pred CEeeEcCCCEEEEEEC
Confidence 4677899999999864
No 127
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=28.25 E-value=47 Score=20.82 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.2
Q ss_pred hcccccCCEEEEeecC
Q 031485 12 HWKILRGDNVMIIRGK 27 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~ 27 (159)
.+.|++||.+.|+.=.
T Consensus 24 ELsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 24 EVALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCCTTCEEEECCSS
T ss_pred ccCCCCCCEEEEEecC
Confidence 6778999999998743
No 128
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=27.64 E-value=47 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.587 Sum_probs=12.5
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wxt_A 22 RELTVVQGEKLEVLD 36 (68)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEEE
Confidence 467789999999986
No 129
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=27.23 E-value=47 Score=20.77 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.7
Q ss_pred hcccccCCEEEEeec
Q 031485 12 HWKILRGDNVMIIRG 26 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G 26 (159)
.+.|++||.|.|+.-
T Consensus 31 eLs~~~Gd~i~v~~~ 45 (80)
T 2v1r_A 31 EVALKKGDLMAILSK 45 (80)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred EecCCCCCEEEEEEC
Confidence 677899999999874
No 130
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=26.62 E-value=38 Score=21.03 Aligned_cols=15 Identities=7% Similarity=0.353 Sum_probs=12.7
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.+.|+.
T Consensus 19 ~ELsf~~Gd~i~vl~ 33 (67)
T 2b86_A 19 QELDIKKNERLWLLD 33 (67)
T ss_dssp TSCCBCTTCEEEEEE
T ss_pred CccccCCCCEEEEEe
Confidence 457789999999987
No 131
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=26.51 E-value=41 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.3
Q ss_pred hcchhcccccCCEEEEeecCCCC
Q 031485 8 KLIRHWKILRGDNVMIIRGKDKG 30 (159)
Q Consensus 8 ~~ir~~~i~kGD~V~Vi~G~dKG 30 (159)
..++.+.++.||+|.+..-+.|.
T Consensus 84 ~~irrf~lr~GD~V~g~vr~~~~ 106 (130)
T 1a62_A 84 SQIRRFNLRTGDTISGKIRPPKE 106 (130)
T ss_dssp HHHHHTTCCTTCEEEEEEECCCT
T ss_pred HHHhHhCCCCCCEEEEEEeCCCC
Confidence 45788999999999876544443
No 132
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=26.10 E-value=40 Score=22.31 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=18.4
Q ss_pred hcchhcccccCCEEEEeecCCCCcEeeEE
Q 031485 8 KLIRHWKILRGDNVMIIRGKDKGETGAIK 36 (159)
Q Consensus 8 ~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~ 36 (159)
-+..+..|.+||+|.|--=++--..|.|.
T Consensus 47 ~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 47 MRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp HHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred eecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 34445568999999986545444445554
No 133
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.91 E-value=24 Score=21.98 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=12.3
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.+.|+.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 25 SELSFTAGTVFDNVH 39 (72)
T ss_dssp SBCCBCTTCEEBSCC
T ss_pred CEeCCcCCCEEEEEE
Confidence 457789999999885
No 134
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=25.60 E-value=1.3e+02 Score=18.80 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=27.0
Q ss_pred hhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEE
Q 031485 11 RHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIV 47 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~V 47 (159)
+.-.|++|.+++++.-...--.++|.+|+...+++.|
T Consensus 9 ~~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~~V 45 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLI 45 (69)
T ss_dssp TTCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCCCcCCCCEEEEEECCCCccccEEEEEeccCCEEEE
Confidence 4456899999999854443367899998766777655
No 135
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=25.37 E-value=52 Score=21.27 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.2
Q ss_pred hcccccCCEEEEeecC
Q 031485 12 HWKILRGDNVMIIRGK 27 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~ 27 (159)
.+.|++||.|.|+.-.
T Consensus 31 eLsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 31 EVALKKGDLMAILSKK 46 (92)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEECC
Confidence 6788999999998743
No 136
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.22 E-value=58 Score=20.40 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=13.2
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|++||.|.|+.-.
T Consensus 28 ~eLs~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 28 DELTIEEHEVLEVIEDG 44 (78)
T ss_dssp TBCCBCSSEEEEEEECC
T ss_pred CCCCCCCCCEEEEEecc
Confidence 35778999999998754
No 137
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=25.21 E-value=83 Score=23.14 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=23.0
Q ss_pred hcccccCCEEEEeecCCCCcEeeEEEEEccCC
Q 031485 12 HWKILRGDNVMIIRGKDKGETGAIKRVIRSQN 43 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~ 43 (159)
+..|.+||.|.|---++--..|.|..++...+
T Consensus 67 ~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 67 KVWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp SCCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred eEEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 67799999999965454444488888776554
No 138
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=25.16 E-value=98 Score=19.51 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=18.2
Q ss_pred ccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEe
Q 031485 14 KILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 14 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
.++.||+|.| +|++++.+++++.+.
T Consensus 45 ~~~~Gd~V~v----------~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 45 NLNVGDEIIV----------QAIDVRPEKREIDFK 69 (80)
T ss_dssp GCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred eeCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4788999885 567788777776654
No 139
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=25.12 E-value=35 Score=20.79 Aligned_cols=16 Identities=0% Similarity=0.160 Sum_probs=13.0
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.+.|+.-
T Consensus 22 ~eLsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 22 DDLNFEKDQEIIVTSV 37 (68)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEe
Confidence 3577899999999863
No 140
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=25.04 E-value=37 Score=23.57 Aligned_cols=30 Identities=13% Similarity=0.054 Sum_probs=21.3
Q ss_pred hcccccCCEEEEeecCCC-CcEeeEEEEEcc
Q 031485 12 HWKILRGDNVMIIRGKDK-GETGAIKRVIRS 41 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dK-Gk~G~V~~V~~~ 41 (159)
+..|.+||.|.|---++- -..|.|..++..
T Consensus 56 ~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 56 RIWVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp HHCCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred eEEecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 566899999998654544 455888877543
No 141
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=24.93 E-value=54 Score=19.14 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.0
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+.+||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 2bz8_A 16 DELTISVGEIITNIRKE 32 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CEeeECCCCEEEEEEeC
Confidence 46789999999999854
No 142
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=24.92 E-value=66 Score=19.53 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=12.2
Q ss_pred hcccccCCEEEEee
Q 031485 12 HWKILRGDNVMIIR 25 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~ 25 (159)
.+.|.+||.|.|+.
T Consensus 24 eLs~~~Gd~i~v~~ 37 (68)
T 2k2m_A 24 ELSVKQRDVLEVLD 37 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cccCCCCCEEEEEE
Confidence 57789999999987
No 143
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.89 E-value=66 Score=20.00 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.9
Q ss_pred chhcccccCCEEEEeec
Q 031485 10 IRHWKILRGDNVMIIRG 26 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~G 26 (159)
-..+.|++||.|.|+.-
T Consensus 28 ~~eLsf~~Gd~i~v~~~ 44 (76)
T 2csi_A 28 EAELTFCTGDIITVFGE 44 (76)
T ss_dssp TTSCCCCTTCEEEEESS
T ss_pred CCcccCCCCCEEEEeEe
Confidence 45678999999999874
No 144
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.82 E-value=43 Score=21.66 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 32 VELSFRKGEHICLIRK 47 (90)
T ss_dssp SBCCCCTTCEEEESSC
T ss_pred CcCCCCCCCEEEEEEE
Confidence 4577899999999863
No 145
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=24.82 E-value=47 Score=20.26 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=12.8
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 21 EELNFEKGETMEVIEK 36 (71)
T ss_dssp SBCCCCSSCCEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3577899999999874
No 146
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=24.75 E-value=50 Score=20.95 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=12.6
Q ss_pred hcchhcccccCCEEEEee
Q 031485 8 KLIRHWKILRGDNVMIIR 25 (159)
Q Consensus 8 ~~ir~~~i~kGD~V~Vi~ 25 (159)
.+.....+.+||.|.|--
T Consensus 40 ~Rk~~i~i~~GD~V~ve~ 57 (71)
T 1hr0_W 40 MRMHYIRILPGDRVVVEI 57 (71)
T ss_dssp HHHTCCCCCTTCEEEEEC
T ss_pred EeccCcCCCCCCEEEEEE
Confidence 344456677999999853
No 147
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=24.42 E-value=69 Score=19.24 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=12.2
Q ss_pred cccccCCEEEEeec
Q 031485 13 WKILRGDNVMIIRG 26 (159)
Q Consensus 13 ~~i~kGD~V~Vi~G 26 (159)
+.|++||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 78999999999864
No 148
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=24.24 E-value=56 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.5
Q ss_pred hcccccCCEEEEeec
Q 031485 12 HWKILRGDNVMIIRG 26 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G 26 (159)
.+.|++||.|.|+.-
T Consensus 45 ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 45 ELTLRRGDRVQVLSQ 59 (89)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccccCCCCEEEEEec
Confidence 577899999999874
No 149
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=24.24 E-value=53 Score=20.36 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.6
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.|++||.|.|+.-.
T Consensus 24 ~eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 24 DELSFKRGDILKVLNEE 40 (74)
T ss_dssp TBCCBCTTCEEECCBCS
T ss_pred CeeeEcCCCEEEEeEec
Confidence 36788999999998743
No 150
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=23.97 E-value=39 Score=20.43 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 22 TLLSFAQGDVITLLIP 37 (67)
T ss_dssp SBCCBCTTCEEEESSS
T ss_pred CCCcCCCCCEEEEeEC
Confidence 3578899999999873
No 151
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=23.91 E-value=55 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=18.0
Q ss_pred hcccccCCEEEEeecCCCC-cEeeEEEEEc
Q 031485 12 HWKILRGDNVMIIRGKDKG-ETGAIKRVIR 40 (159)
Q Consensus 12 ~~~i~kGD~V~Vi~G~dKG-k~G~V~~V~~ 40 (159)
.-.+++||+|.+-.|..-. ...+|.+|..
T Consensus 84 a~~L~~Gd~v~~~~~~~~~~~~~~V~~I~~ 113 (139)
T 2in0_A 84 AGELRKGDRVAVRDVETGELRYSVIREVLP 113 (139)
T ss_dssp GGGCCTTCEEEEECTTTCCEEEEEEEEEEE
T ss_pred HHHCCCCCEEEeCCCcceeecceEEEEEee
Confidence 3458999999988775322 1234555543
No 152
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=23.73 E-value=77 Score=20.33 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=13.1
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 32 EELNFEKGETMEVIEK 47 (91)
T ss_dssp SBCCCCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3577899999999874
No 153
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.17 E-value=84 Score=19.84 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.6
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~v~~~ 47 (81)
T 1x6g_A 32 GELAFRKGDVVTILEA 47 (81)
T ss_dssp TCCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEec
Confidence 3567889999999874
No 154
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=23.10 E-value=37 Score=20.62 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=12.4
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wi7_A 22 DELELKVGDIIEVVG 36 (68)
T ss_dssp TBCCBCTTCEECCCE
T ss_pred CCccCcCCCEEEEEE
Confidence 367889999999885
No 155
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=22.70 E-value=60 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=13.4
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.+++||.|.|+.-
T Consensus 15 ~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 15 NELTFVENDKIINIEF 30 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcccCCCCEEEEEEe
Confidence 4678899999999884
No 156
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=22.46 E-value=1.8e+02 Score=19.50 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.8
Q ss_pred cCCEEEEeecCCCCc-EeeEEEEEccCCEEEEecc
Q 031485 17 RGDNVMIIRGKDKGE-TGAIKRVIRSQNRVIVEGK 50 (159)
Q Consensus 17 kGD~V~Vi~G~dKGk-~G~V~~V~~~~~~V~Vegv 50 (159)
-|=.|-+.++.+-|- +|+|..|++.++.+.+.++
T Consensus 8 iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~ 42 (84)
T 2vc8_A 8 LGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP 42 (84)
T ss_dssp TTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE
T ss_pred cCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh
Confidence 478899999999975 7999999999999988864
No 157
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=22.44 E-value=41 Score=21.00 Aligned_cols=15 Identities=7% Similarity=0.399 Sum_probs=12.6
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|++||.|.|+.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (76)
T 2ed1_A 25 DELTFIEGEVIIVTG 39 (76)
T ss_dssp SBCCCCSSCEEEESS
T ss_pred CCcCcCCCCEEEEEE
Confidence 357789999999987
No 158
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=21.87 E-value=51 Score=22.84 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.2
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|.+||.|.|+.
T Consensus 74 ~eLsf~~Gd~i~vl~ 88 (119)
T 2rqr_A 74 PQLSLQIGDVVRIQE 88 (119)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcccCcCCCEEEEEE
Confidence 357789999999987
No 159
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=21.86 E-value=1.4e+02 Score=17.88 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=23.5
Q ss_pred ccccCCEEEEee-cCCCCcEeeEEEEEccCCEEEEe
Q 031485 14 KILRGDNVMIIR-GKDKGETGAIKRVIRSQNRVIVE 48 (159)
Q Consensus 14 ~i~kGD~V~Vi~-G~dKGk~G~V~~V~~~~~~V~Ve 48 (159)
.+++||.+...= +..+=-.++|.++....+.+.|.
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 38 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 38 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 357899988874 33333469999998755665554
No 160
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=21.68 E-value=95 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=18.7
Q ss_pred ccccCCEEEEe-ecCCCCcEeeEEEEEc
Q 031485 14 KILRGDNVMII-RGKDKGETGAIKRVIR 40 (159)
Q Consensus 14 ~i~kGD~V~Vi-~G~dKGk~G~V~~V~~ 40 (159)
.|..||+|.|. .|. .+..|+|.-|=+
T Consensus 11 ~~~vG~rv~V~~~g~-~~~~GtVryvG~ 37 (95)
T 1lpl_A 11 NIMVGNRCEVTVGAQ-MARRGEVAYVGA 37 (95)
T ss_dssp TCCTTCEEEECCTTS-CCEEEEEEEEEC
T ss_pred cCCCCCEEEEccCCC-CceEEEEEEecc
Confidence 47889999987 443 367788876643
No 161
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.37 E-value=90 Score=20.44 Aligned_cols=16 Identities=6% Similarity=0.083 Sum_probs=13.0
Q ss_pred chhcccccCCEEEEee
Q 031485 10 IRHWKILRGDNVMIIR 25 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi~ 25 (159)
-..+.|++||.|.|+.
T Consensus 39 ~~eLsf~~Gd~i~vl~ 54 (97)
T 2csq_A 39 EEELPFKEGQIIKVYG 54 (97)
T ss_dssp TTBCCBCTTCEEEEEE
T ss_pred CCccCCCCCCEEEEEE
Confidence 3467899999999983
No 162
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=21.29 E-value=61 Score=20.03 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.1
Q ss_pred hhcccccCCEEEEeecCC
Q 031485 11 RHWKILRGDNVMIIRGKD 28 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~d 28 (159)
..+.|++||.|.|+.-.+
T Consensus 21 ~ELs~~~Gd~i~v~~~~~ 38 (65)
T 2lj0_A 21 DELELRDGDIVDVMEKCD 38 (65)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CCcCCCCCCEEEEeEeCC
Confidence 457899999999986443
No 163
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.05 E-value=45 Score=21.02 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.0
Q ss_pred hhcccccCCEEEEee
Q 031485 11 RHWKILRGDNVMIIR 25 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~ 25 (159)
..+.|.+||.|.|+.
T Consensus 32 ~eLs~~~Gd~i~v~~ 46 (79)
T 1x6b_A 32 DEVTLQQADVVLVLQ 46 (79)
T ss_dssp SBCCCCTTEEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 357788999999876
No 164
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.96 E-value=1.9e+02 Score=19.06 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=16.6
Q ss_pred cEeeEEEEEccCCEEEEec
Q 031485 31 ETGAIKRVIRSQNRVIVEG 49 (159)
Q Consensus 31 k~G~V~~V~~~~~~V~Veg 49 (159)
-.|+|.+|+++.+.|.+..
T Consensus 18 ~~G~V~~id~~~~~iTi~H 36 (88)
T 2vb2_X 18 ATGVVKGIDLESKKITIHH 36 (88)
T ss_dssp EEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEec
Confidence 4699999999999998873
No 165
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.36 E-value=74 Score=18.37 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=13.6
Q ss_pred hhcccccCCEEEEeecC
Q 031485 11 RHWKILRGDNVMIIRGK 27 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G~ 27 (159)
..+.+.+||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 18 DELTFKEGDTIIVHQKD 34 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 46788999999998743
No 166
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=20.34 E-value=55 Score=20.69 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=10.7
Q ss_pred chhcccccCCEEEEe
Q 031485 10 IRHWKILRGDNVMII 24 (159)
Q Consensus 10 ir~~~i~kGD~V~Vi 24 (159)
.+...+.+||.|.|-
T Consensus 41 k~~i~i~vGD~V~ve 55 (71)
T 1ah9_A 41 KNYIRILTGDKVTVE 55 (71)
T ss_dssp GTTCCCCTTCEECCE
T ss_pred ccCccCCCCCEEEEE
Confidence 344667799999875
No 167
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=20.19 E-value=70 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=27.8
Q ss_pred cHhHhhcchhcccccCCEEEEeecCCCCcEeeEEEEEccCCEEEEecccee
Q 031485 3 WKAAEKLIRHWKILRGDNVMIIRGKDKGETGAIKRVIRSQNRVIVEGKNLV 53 (159)
Q Consensus 3 ~~~~~~~ir~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~ 53 (159)
|++..+.+-.+.|.+||.|.+. |.........+.|+++..-
T Consensus 45 ~P~~a~~~~~~~v~~GD~i~~t----------V~~~s~~~g~~tleN~ttg 85 (173)
T 1y43_B 45 YPDYAYDFSDITISEGDSIKVT----------VEATSKSSGSATVENLTTG 85 (173)
T ss_dssp ETSCCEEETTCCCCTTCEEEEE----------EEEEETTEEEEEEEETTTT
T ss_pred cCCCccccccceeCCCCEEEEE----------EEEcCCCcEEEEEEECCCC
Confidence 3455667777899999999875 4455555566777766543
No 168
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=20.12 E-value=72 Score=18.81 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.5
Q ss_pred hhcccccCCEEEEeec
Q 031485 11 RHWKILRGDNVMIIRG 26 (159)
Q Consensus 11 r~~~i~kGD~V~Vi~G 26 (159)
..+.|++||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 16 REVTMKKGDILTLLNS 31 (65)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEc
Confidence 4678999999999984
Done!