BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031493
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 69/74 (93%)
Query: 5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
FQ ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct: 398 FQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 457
Query: 65 ALKMAFRKFSFDHD 78
ALKMAFRKF DH+
Sbjct: 458 ALKMAFRKFCVDHN 471
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 139 bits (350), Expect = 8e-34, Method: Composition-based stats.
Identities = 63/74 (85%), Positives = 66/74 (89%)
Query: 5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
FQ ELAR+ GYTAARFGHV FPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct: 398 FQAELAREXGYTAARFGHVXFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 457
Query: 65 ALKMAFRKFSFDHD 78
ALK AFRKF DH+
Sbjct: 458 ALKXAFRKFCVDHN 471
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 22 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
HVMF +EPA A+LL+ G + +FSD+GS ++E+A KMA +
Sbjct: 109 HVMFGGLTHEPAARLAKLLVDITPAGLDT-VFFSDSGSVSVEVAAKMALQ 157
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 22 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
HVMF +EPA A+LL+ G + +FSD+GS ++E+A KMA +
Sbjct: 114 HVMFGGLTHEPAARLAKLLVDITPAGLDT-VFFSDSGSVSVEVAAKMALQ 162
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 22 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
HVMF +EPA A+LL+ G + +FSD+GS ++E+A KMA +
Sbjct: 89 HVMFGGLTHEPAARLAKLLVDITPAGLDT-VFFSDSGSVSVEVAAKMALQ 137
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 32 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
PA + AE L+ + +R ++SD+G+ A+EIALKMAF+
Sbjct: 88 PATQLAETLID-ISPKKLTRVFYSDSGAEAMEIALKMAFQ 126
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 32 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
PA + AE L+ + +R ++SD+G+ A+EIALKMAF+
Sbjct: 88 PATQLAETLID-ISPKKLTRVFYSDSGAEAMEIALKMAFQ 126
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
HVMF E + PA+E L+ + + +D+GS A+E+A+KMA +
Sbjct: 75 MSHVMFGEITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQ 125
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 19 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 19 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 19 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 19 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 20 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV 79
HVMF + PA+E L+ + + +D+GS A+E+A+KMA + + +
Sbjct: 75 MSHVMFGGITHAPAIELCRKLVAMTPQPLEC-VFLADSGSVAVEVAMKMALQYWQAKGEA 133
Query: 80 LVDFL 84
FL
Sbjct: 134 RQRFL 138
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 FP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 74
FP +EPA++ AE L + +G + +FS++GS A E A K+A + ++
Sbjct: 84 FPXSQSHEPAIKLAEKLNEWLGGEYV--IFFSNSGSEANETAFKIARQYYA 132
>pdb|3QFI|A Chain A, X-Ray Crystal Structure Of Transcriptional Regulator
(Ef0465) From Enterococcus Faecalis, Northeast
Structural Genomics Consortium Target Efr190
Length = 301
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 33 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK---FSFDHDVLVDFLGKDTT 89
A E +LL G+ G R + +T + + + K S D D+L D +G DT
Sbjct: 18 AQEPFSVLLMGIDTGDLGRTEQGRSDTTMV-VTINPKENKSTMISLDRDILTDIVGNDTQ 76
Query: 90 EKC 92
+K
Sbjct: 77 DKL 79
>pdb|3RE2|A Chain A, Crystal Structure Of Menin Reveals The Binding Site For
Mixed Lineage Leukemia (Mll) Protein
Length = 472
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 12 DMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 62
D GY A ++ + E +Y+ E A L+ + K ++A S GST +
Sbjct: 321 DAGYVAGKYNYSKDDEEMYKEFHEIANDLIPNILKDAVAKADPSGTGSTNL 371
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 32 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
P LE A+ L+ + + +FS++G+ AIE ++K+
Sbjct: 87 PQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV 124
>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
Length = 264
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 14 GYTAARFGHVMFP---ENVYEPALECAELLLQG 43
G A R G V E VYE ALE AE L QG
Sbjct: 177 GEEAERLGLVALAVEDEKVYEKALEVAERLAQG 209
>pdb|3NQK|A Chain A, Crystal Structure Of A Structural Genomics, Unknown
Function (Bacova_03322) From Bacteroides Ovatus At 2.61
A Resolution
pdb|3SOT|A Chain A, Crystal Structure Of A Multidomain Protein Including
Duf1735 (Bacova_03322) From Bacteroides Ovatus At 2.80 A
Resolution
pdb|3SOT|B Chain B, Crystal Structure Of A Multidomain Protein Including
Duf1735 (Bacova_03322) From Bacteroides Ovatus At 2.80 A
Resolution
pdb|3SOT|C Chain C, Crystal Structure Of A Multidomain Protein Including
Duf1735 (Bacova_03322) From Bacteroides Ovatus At 2.80 A
Resolution
pdb|3SOT|D Chain D, Crystal Structure Of A Multidomain Protein Including
Duf1735 (Bacova_03322) From Bacteroides Ovatus At 2.80 A
Resolution
pdb|3SOT|E Chain E, Crystal Structure Of A Multidomain Protein Including
Duf1735 (Bacova_03322) From Bacteroides Ovatus At 2.80 A
Resolution
pdb|3SOT|F Chain F, Crystal Structure Of A Multidomain Protein Including
Duf1735 (Bacova_03322) From Bacteroides Ovatus At 2.80 A
Resolution
Length = 319
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 15 YTAARFGHVMFPENVYEPALECAELL-----LQGVG--KGWASRAYFSDNGSTAIEIALK 67
YT FPE V+ PA C ELL LQ + + W D+GS A + +
Sbjct: 85 YTEXEEDKYEFPETVHIPAGSCVELLNIDFNLQDIDXLEKWVLPLTIVDDGSYAYQSHPR 144
Query: 68 MAFRK 72
+ K
Sbjct: 145 KNYAK 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,163,730
Number of Sequences: 62578
Number of extensions: 200767
Number of successful extensions: 474
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 26
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)