BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031495
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT
IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV
LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL

High Scoring Gene Products

Symbol, full name Information P value
AT1G26180 protein from Arabidopsis thaliana 2.4e-60

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031495
        (158 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2028815 - symbol:AT1G26180 species:3702 "Arabi...   618  2.4e-60   1


>TAIR|locus:2028815 [details] [associations]
            symbol:AT1G26180 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AY072304 EMBL:AY114552
            IPI:IPI00522039 RefSeq:NP_173943.2 UniGene:At.41289
            ProteinModelPortal:Q8VYA7 STRING:Q8VYA7 EnsemblPlants:AT1G26180.1
            GeneID:839159 KEGG:ath:AT1G26180 TAIR:At1g26180 eggNOG:COG4241
            HOGENOM:HOG000030866 InParanoid:Q8VYA7 OMA:LVGENLW PhylomeDB:Q8VYA7
            ProtClustDB:CLSN2690425 ArrayExpress:Q8VYA7 Genevestigator:Q8VYA7
            InterPro:IPR018710 Pfam:PF09991 Uniprot:Q8VYA7
        Length = 289

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 112/158 (70%), Positives = 140/158 (88%)

Query:     1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
             +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct:   132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query:    61 IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct:   192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251

Query:   121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
             LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct:   252 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.143   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 21  0.36    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.36u 0.08s 13.44t   Elapsed:  00:00:00
  Total cpu time:  13.36u 0.08s 13.44t   Elapsed:  00:00:00
  Start:  Sat May 11 04:19:25 2013   End:  Sat May 11 04:19:25 2013

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