BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031495
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
 pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
 pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
 pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
          Length = 495

 Score = 26.9 bits (58), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 4   GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLW-RLGVD 51
           G+     T+V++   L +   P K +  ++  GV+G  +GS+W RLG D
Sbjct: 178 GITIDEDTIVSSTGALSLKKVPEKMV--VIGAGVIGVELGSVWQRLGAD 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.143    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,824,796
Number of Sequences: 62578
Number of extensions: 125004
Number of successful extensions: 340
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.7 bits)