Query 031495
Match_columns 158
No_of_seqs 101 out of 141
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 14:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09991 DUF2232: Predicted me 99.9 3.1E-20 6.7E-25 151.6 19.7 152 1-153 33-197 (290)
2 COG4241 Predicted membrane pro 99.5 1.3E-14 2.8E-19 120.3 5.6 152 1-154 47-209 (314)
3 COG4241 Predicted membrane pro 98.9 2.5E-09 5.5E-14 89.1 5.4 155 1-156 136-308 (314)
4 PF13858 DUF4199: Protein of u 96.4 0.28 6.1E-06 36.8 17.5 89 51-141 62-162 (163)
5 TIGR02357 thia_yuaJ probable p 95.9 0.13 2.7E-06 40.4 10.1 47 1-49 44-97 (183)
6 TIGR02359 thiW thiW protein. L 93.8 1.2 2.5E-05 34.4 10.0 75 4-81 46-122 (160)
7 PF07155 ECF-ribofla_trS: ECF- 92.4 3.7 8.1E-05 30.9 14.6 50 3-52 49-99 (169)
8 PF09991 DUF2232: Predicted me 91.7 4.2 9E-05 32.8 11.3 140 2-141 38-190 (290)
9 PF09515 Thia_YuaJ: Thiamine t 91.1 1.1 2.4E-05 35.1 6.9 77 1-79 40-133 (177)
10 PF07456 Hpre_diP_synt_I: Hept 90.7 5.1 0.00011 30.5 10.0 78 2-79 39-119 (148)
11 PRK11339 abgT putative aminobe 84.0 33 0.00073 31.2 13.3 121 2-133 259-405 (508)
12 PRK13661 hypothetical protein; 84.0 19 0.00041 28.3 12.3 46 4-49 52-97 (182)
13 PF12822 DUF3816: Protein of u 82.9 17 0.00038 27.1 13.8 52 3-54 42-101 (172)
14 COG5547 Small integral membran 81.4 9.8 0.00021 24.6 6.1 45 2-49 8-52 (62)
15 TIGR00819 ydaH p-Aminobenzoyl- 81.0 35 0.00076 31.1 11.7 90 30-130 309-404 (513)
16 PF03806 ABG_transport: AbgT p 80.6 45 0.00098 30.3 14.2 101 30-137 302-404 (502)
17 PF02632 BioY: BioY family; I 80.0 23 0.00051 26.7 9.3 29 21-51 54-82 (148)
18 PF09512 ThiW: Thiamine-precur 79.7 21 0.00046 27.3 8.5 74 4-81 43-119 (150)
19 PF04306 DUF456: Protein of un 79.7 23 0.0005 26.5 9.7 68 4-75 60-129 (140)
20 PF07694 5TM-5TMR_LYT: 5TMR of 77.3 27 0.00059 26.0 12.9 44 4-48 59-105 (169)
21 COG4720 Predicted membrane pro 76.1 32 0.00069 27.0 8.7 80 4-83 52-135 (177)
22 PRK03982 heat shock protein Ht 71.2 38 0.00082 28.0 8.7 29 76-104 55-84 (288)
23 PF04172 LrgB: LrgB-like famil 69.6 57 0.0012 26.3 13.5 82 51-145 75-161 (215)
24 PRK03001 M48 family peptidase; 68.6 33 0.00071 28.3 7.8 77 28-104 6-83 (283)
25 PF01219 DAGK_prokar: Prokaryo 66.4 44 0.00096 23.7 9.1 89 43-131 9-99 (104)
26 TIGR00804 nupC nucleoside tran 65.4 99 0.0021 27.4 11.0 97 41-144 12-127 (401)
27 PF07698 7TM-7TMR_HD: 7TM rece 63.5 64 0.0014 24.6 11.4 75 4-81 81-155 (194)
28 PF06541 DUF1113: Protein of u 57.5 22 0.00048 26.9 4.5 58 30-87 35-93 (157)
29 PF11833 DUF3353: Protein of u 57.1 84 0.0018 24.8 7.8 59 20-79 108-166 (194)
30 TIGR02185 Trep_Strep conserved 55.0 1E+02 0.0022 24.1 14.6 24 119-142 163-186 (189)
31 TIGR00784 citMHS citrate trans 53.9 1.5E+02 0.0033 25.9 11.7 35 32-66 4-38 (431)
32 TIGR03426 shape_MreD rod shape 53.6 87 0.0019 22.9 8.8 64 2-66 44-109 (154)
33 COG1266 Predicted metal-depend 53.2 59 0.0013 24.6 6.4 56 9-64 156-212 (226)
34 COG1268 BioY Uncharacterized c 51.9 53 0.0012 25.9 5.9 30 20-51 82-111 (184)
35 TIGR00346 azlC 4-azaleucine re 49.6 1.4E+02 0.003 24.1 8.4 60 27-88 8-69 (221)
36 COG2966 Uncharacterized conser 48.7 1.5E+02 0.0033 24.3 11.3 102 31-136 128-233 (250)
37 PRK03072 heat shock protein Ht 48.4 1.6E+02 0.0034 24.5 9.0 44 60-105 37-87 (288)
38 PRK10417 nikC nickel transport 47.2 1.6E+02 0.0034 24.1 16.5 38 98-135 164-203 (272)
39 PF13687 DUF4153: Domain of un 47.0 1.4E+02 0.003 23.5 7.7 59 27-95 157-215 (217)
40 PF01102 Glycophorin_A: Glycop 46.7 29 0.00064 25.6 3.5 26 27-52 67-94 (122)
41 PF13493 DUF4118: Domain of un 45.6 24 0.00052 24.1 2.8 50 2-51 43-104 (105)
42 PF09605 Trep_Strep: Hypotheti 44.6 1.5E+02 0.0032 23.0 13.9 25 118-142 159-183 (186)
43 PRK11909 cobalt transport prot 44.0 1.7E+02 0.0037 23.6 10.0 77 4-80 79-160 (230)
44 PF02517 Abi: CAAX protease se 42.9 94 0.002 20.3 6.6 47 9-57 37-83 (91)
45 TIGR00271 uncharacterized hydr 42.5 92 0.002 24.3 5.9 26 12-44 29-54 (175)
46 PF01864 DUF46: Putative integ 42.2 1.6E+02 0.0036 22.9 11.4 28 121-148 147-174 (175)
47 PRK09881 D-ala-D-ala transport 41.8 2E+02 0.0044 23.9 15.7 55 97-153 190-246 (296)
48 COG1346 LrgB Putative effector 41.3 2E+02 0.0043 23.6 11.4 103 35-145 68-174 (230)
49 PF05957 DUF883: Bacterial pro 41.2 32 0.0007 23.5 2.9 23 24-49 72-94 (94)
50 PRK12996 ulaA PTS system ascor 40.5 2.2E+02 0.0047 25.8 8.5 46 2-49 366-423 (463)
51 PF11177 DUF2964: Protein of u 39.8 1E+02 0.0022 20.1 4.8 42 2-44 3-48 (62)
52 TIGR00341 conserved hypothetic 39.7 89 0.0019 26.8 5.8 18 12-29 138-155 (325)
53 PF04930 FUN14: FUN14 family; 39.5 89 0.0019 21.7 5.0 55 37-97 7-61 (100)
54 PRK04288 antiholin-like protei 39.1 2.2E+02 0.0047 23.3 13.4 101 32-145 68-177 (232)
55 COG2978 AbgT Putative p-aminob 39.1 3.1E+02 0.0066 25.1 10.3 86 31-136 315-415 (516)
56 PF04892 VanZ: VanZ like famil 38.1 87 0.0019 22.1 4.9 37 27-63 53-89 (133)
57 PF15050 SCIMP: SCIMP protein 37.5 81 0.0017 23.4 4.5 34 111-144 7-40 (133)
58 PF13829 DUF4191: Domain of un 36.5 1.5E+02 0.0032 24.2 6.4 28 37-67 40-67 (224)
59 COG1178 ThiP ABC-type Fe3+ tra 36.1 3.4E+02 0.0073 24.7 10.7 50 79-130 423-474 (540)
60 PF09835 DUF2062: Uncharacteri 34.9 1.8E+02 0.004 21.3 11.5 25 119-143 123-147 (154)
61 PF01773 Nucleos_tra2_N: Na+ d 34.9 1.4E+02 0.003 19.9 7.4 51 41-98 8-60 (75)
62 PRK09459 pspG phage shock prot 34.2 1.5E+02 0.0033 20.1 5.9 42 10-51 25-66 (76)
63 PF05915 DUF872: Eukaryotic pr 33.5 95 0.0021 22.5 4.4 27 53-79 41-67 (115)
64 PRK09928 choline transport pro 33.5 4.3E+02 0.0093 25.1 10.0 20 33-52 154-173 (679)
65 TIGR00791 gntP gluconate trans 33.5 3.3E+02 0.0071 23.8 13.2 29 117-145 105-135 (440)
66 PRK15060 L-dehydroascorbate tr 33.2 3.5E+02 0.0075 24.0 15.6 101 38-145 247-353 (425)
67 PF03591 AzlC: AzlC protein; 33.0 2E+02 0.0044 21.2 8.6 38 30-67 2-40 (143)
68 TIGR02711 symport_actP cation/ 32.9 3E+02 0.0065 24.9 8.5 14 40-53 447-460 (549)
69 PRK15038 autoinducer 2 import 32.2 3.1E+02 0.0067 23.1 10.6 74 7-84 42-117 (330)
70 COG4603 ABC-type uncharacteriz 31.7 3.5E+02 0.0075 23.5 8.7 75 46-129 5-79 (356)
71 PF07869 DUF1656: Protein of u 30.7 1.2E+02 0.0027 19.1 4.1 40 116-157 10-49 (58)
72 PF06149 DUF969: Protein of un 30.7 71 0.0015 25.9 3.6 37 98-141 178-214 (218)
73 COG3601 Predicted membrane pro 30.7 2.7E+02 0.0059 22.0 9.1 63 4-67 51-117 (186)
74 KOG0569 Permease of the major 29.2 4.3E+02 0.0094 23.9 9.2 85 50-144 3-89 (485)
75 TIGR02663 nifX nitrogen fixati 29.1 29 0.00062 24.8 1.0 10 149-158 110-119 (119)
76 PRK04032 hypothetical protein; 29.1 2.7E+02 0.0058 21.4 12.1 26 122-147 132-157 (159)
77 PRK01844 hypothetical protein; 28.8 1.6E+02 0.0035 19.8 4.5 48 53-106 4-56 (72)
78 PRK09272 hypothetical protein; 27.9 2.3E+02 0.0051 20.4 6.6 45 28-72 62-106 (109)
79 PRK10711 hypothetical protein; 27.8 3.4E+02 0.0073 22.2 13.2 100 33-145 64-172 (231)
80 PF11023 DUF2614: Protein of u 27.8 2.5E+02 0.0053 20.6 6.3 47 27-73 12-60 (114)
81 TIGR01248 drrC daunorubicin re 27.7 2.5E+02 0.0054 20.6 6.1 8 81-88 136-143 (152)
82 TIGR02212 lolCE lipoprotein re 27.4 3.7E+02 0.0081 22.5 8.6 37 50-86 372-408 (411)
83 TIGR02119 panF sodium/pantothe 27.2 4.2E+02 0.0092 23.1 8.3 10 41-50 410-419 (471)
84 PRK03356 L-carnitine/gamma-but 26.9 4.9E+02 0.011 23.7 11.0 21 33-53 148-168 (504)
85 PF01032 FecCD: FecCD transpor 26.7 3.8E+02 0.0083 22.4 9.2 40 28-67 102-144 (311)
86 COG1176 PotB ABC-type spermidi 26.6 3.9E+02 0.0084 22.4 10.6 64 35-108 82-147 (287)
87 PRK10408 putative L-valine exp 26.4 2.6E+02 0.0056 20.3 6.7 49 13-65 56-104 (111)
88 PRK10263 DNA translocase FtsK; 26.0 7.6E+02 0.016 25.6 14.4 14 7-20 64-77 (1355)
89 COG0472 Rfe UDP-N-acetylmuramy 25.9 3.4E+02 0.0073 23.0 7.1 35 20-57 182-216 (319)
90 PRK03562 glutathione-regulated 25.8 5.3E+02 0.012 23.8 13.5 73 10-84 244-325 (621)
91 PRK15021 microcin C ABC transp 25.7 4.3E+02 0.0093 22.7 16.5 54 98-153 238-293 (341)
92 PRK07331 cobalt transport prot 25.3 4.3E+02 0.0093 22.5 10.7 47 34-80 112-163 (322)
93 PRK00523 hypothetical protein; 25.3 2E+02 0.0043 19.3 4.4 46 56-106 8-57 (72)
94 PF02659 DUF204: Domain of unk 25.3 1.7E+02 0.0036 18.5 4.1 27 37-63 38-64 (67)
95 COG0555 CysU ABC-type sulfate 25.0 1.2E+02 0.0027 25.4 4.2 99 29-129 101-204 (274)
96 TIGR03082 Gneg_AbrB_dup membra 24.9 3E+02 0.0064 20.5 12.2 76 29-104 47-130 (156)
97 PRK15406 oligopeptide ABC tran 24.2 4.2E+02 0.0092 22.1 16.1 54 98-153 199-254 (302)
98 TIGR00828 EIID-AGA PTS system, 24.1 2.1E+02 0.0045 23.9 5.4 35 30-65 230-264 (271)
99 TIGR03008 pepcterm_CAAX CAAX p 24.0 2.5E+02 0.0055 22.6 5.8 43 20-64 165-207 (222)
100 PF14974 DUF4511: Domain of un 23.8 1.7E+02 0.0037 21.1 4.2 46 88-145 5-63 (105)
101 PF02535 Zip: ZIP Zinc transpo 23.3 4E+02 0.0087 21.5 7.7 50 24-73 228-282 (317)
102 COG4392 Predicted membrane pro 23.1 2.6E+02 0.0057 20.2 5.0 9 149-157 32-40 (107)
103 PRK10535 macrolide transporter 23.0 5.8E+02 0.013 23.6 8.6 36 50-85 609-644 (648)
104 COG3247 HdeD Uncharacterized c 22.9 2.8E+02 0.006 21.9 5.6 51 34-84 113-169 (185)
105 PRK11486 flagellar biosynthesi 22.8 1.3E+02 0.0027 22.3 3.4 21 124-144 24-44 (124)
106 TIGR01625 YidE_YbjL_dupl AspT/ 22.5 3.5E+02 0.0075 20.5 9.1 69 27-96 56-127 (154)
107 PF06645 SPC12: Microsomal sig 22.4 1.7E+02 0.0038 19.4 3.8 17 33-49 18-34 (76)
108 PRK11103 PTS system mannose-sp 22.3 2.4E+02 0.0053 23.7 5.5 37 30-67 240-276 (282)
109 PRK10814 outer membrane-specif 21.9 4.9E+02 0.011 22.0 8.5 36 50-85 360-395 (399)
110 KOG1484 Putative Zn2+ transpor 21.7 2.8E+02 0.006 24.2 5.8 67 34-100 218-284 (354)
111 PF13301 DUF4079: Protein of u 21.4 1.3E+02 0.0027 23.5 3.4 33 22-54 4-36 (175)
112 PF09819 ABC_cobalt: ABC-type 21.1 3.5E+02 0.0075 19.9 8.2 60 7-68 63-127 (129)
113 PRK10862 SoxR reducing system 21.0 2.3E+02 0.005 21.4 4.7 8 39-46 92-99 (154)
114 PF03729 DUF308: Short repeat 20.9 2.1E+02 0.0046 17.4 4.9 35 34-69 34-70 (72)
115 PF07786 DUF1624: Protein of u 20.7 2.6E+02 0.0057 21.6 5.2 47 33-79 172-221 (223)
116 COG3859 Predicted membrane pro 20.6 4.3E+02 0.0093 20.8 8.7 39 2-41 50-95 (185)
117 PRK10913 dipeptide transporter 20.0 5.1E+02 0.011 21.4 16.1 54 98-153 196-251 (300)
118 KOG4112 Signal peptidase subun 20.0 2.4E+02 0.0053 20.0 4.2 23 33-56 33-55 (101)
No 1
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=99.87 E-value=3.1e-20 Score=151.64 Aligned_cols=152 Identities=28% Similarity=0.481 Sum_probs=139.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031495 1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE 80 (158)
Q Consensus 1 ~R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~ 80 (158)
.|||.|.+..+.++++++...+.||..++.+.+.+++.|+.+|+++||++++..++..++++..++.+..+.+.....|+
T Consensus 33 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 112 (290)
T PF09991_consen 33 LRYGLKYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGI 112 (290)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHH---HcCCCC----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031495 81 NILALITINIHASLTFIFS---AAGVNI----------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKAS 147 (158)
Q Consensus 81 N~~~~~~~~~~~~l~~~~~---~~G~~~----------~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~ 147 (158)
|+.++..++++|..|+..+ +.|.++ ++..+.++.+.|+++++.++++++++|.+++.++||.|.+ .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~-~ 191 (290)
T PF09991_consen 113 NIFEQLIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGIP-I 191 (290)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C
Confidence 9999999999999999765 446532 2336889999999999999999999999999999999995 8
Q ss_pred CCCcHH
Q 031495 148 LRLPRW 153 (158)
Q Consensus 148 p~~P~~ 153 (158)
|++||.
T Consensus 192 ~~~~~~ 197 (290)
T PF09991_consen 192 PPLPPF 197 (290)
T ss_pred CCCCch
Confidence 888875
No 2
>COG4241 Predicted membrane protein [Function unknown]
Probab=99.52 E-value=1.3e-14 Score=120.34 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=133.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 031495 1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAM-GYILTSSFLIR 79 (158)
Q Consensus 1 ~R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~-~~~~~s~~l~g 79 (158)
.|||.|.+.. +..++...+.+.+|.......+++++-|+.+|...||..+.+..+..++.++++... +++.+|..+.+
T Consensus 47 ~k~g~k~~v~-~~~v~~~~~~~i~~~~l~~v~l~~~~p~vv~~~~~kr~e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~ 125 (314)
T COG4241 47 LKHGLKHGVE-VLIVAVGVVILIDSKALLLVALMFLIPGVVMGILLKRVEKAFAIMSGASTAAMIWIINFYFPLSIVIRI 125 (314)
T ss_pred HHhccchhhh-eeeEeeeeeEEecchHHHHHHHHHhCchhhhhHHHHhccchhhHHhhHHHHHHHHHHHHHHHhhhhhcc
Confidence 3899999855 577777788888899998999999999999999999998999888888999999999 88999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHH---HcCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 031495 80 ENILALITINIHASLTFIFS---AAGVNI-------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLR 149 (158)
Q Consensus 80 ~N~~~~~~~~~~~~l~~~~~---~~G~~~-------~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~ 149 (158)
+||.+...++++++++.+.+ ..|+.. +++....+++.|..+++.+.++++.++.++.+++||++.+ +|.
T Consensus 126 inpv~~a~~~~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~-v~~ 204 (314)
T COG4241 126 INPVDDAVVYLRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIK-VPI 204 (314)
T ss_pred cCCcHHHHHHHHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCcc-CCC
Confidence 99999999999999998643 566543 3445666788999999999999999999999999999996 998
Q ss_pred CcHHH
Q 031495 150 LPRWL 154 (158)
Q Consensus 150 ~P~~~ 154 (158)
++|-.
T Consensus 205 ~~p~~ 209 (314)
T COG4241 205 FLPFR 209 (314)
T ss_pred cccee
Confidence 88743
No 3
>COG4241 Predicted membrane protein [Function unknown]
Probab=98.88 E-value=2.5e-09 Score=89.09 Aligned_cols=155 Identities=13% Similarity=0.041 Sum_probs=125.1
Q ss_pred CCcchhHHHHHHHHHH---------HHHHH----HhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Q 031495 1 MRWGVAAGRKTMVATA---------MLLLV----LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGA 67 (158)
Q Consensus 1 ~R~g~k~~~~~~~va~---------lll~~----l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~ 67 (158)
+||+...++..+..+| +..++ .+||.+.+.+..+|+.++...|..|-||.+|.....-+.....++.
T Consensus 136 ~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~ 215 (314)
T COG4241 136 LRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPN 215 (314)
T ss_pred HHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeech
Confidence 4899999999888899 88898 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-cCC-CCcchHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 031495 68 MGYILTSSFLIRENILALITINIHASLTFIFSA-AGV-NIVPSMN--VIYVIFGTLVLLN-SGFFVFLLHLLYSVFLTRL 142 (158)
Q Consensus 68 ~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~-~G~-~~~~~~~--~i~~~~p~llv~~-s~i~~~i~~~va~~vL~Rl 142 (158)
.++++..+.+.++|.|++-+.|+.+++++-+.. +|. -..|.++ ..+.-+-.+--.+ ++++.+-.|......+.|+
T Consensus 216 ~fl~~ylivv~~~~l~~~~~gqv~~~I~wnfl~vl~l~l~iqGlSvI~~y~~akgl~~av~vli~ilgiilt~ll~lvrl 295 (314)
T COG4241 216 SFLFWYLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFYLKAKGLPNAVIVLILILGIILTPLLYLVRL 295 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccceeeehhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999996553 221 1123111 1111111122222 5566677777888888899
Q ss_pred CCCCCCCCcHHHHh
Q 031495 143 GMKASLRLPRWLEM 156 (158)
Q Consensus 143 g~~~~p~~P~~~~~ 156 (158)
+.. ++.+|.|.++
T Consensus 296 lg~-Id~~~~~rki 308 (314)
T COG4241 296 LGV-IDLGFDLRKI 308 (314)
T ss_pred cCC-CCCCHHHHHH
Confidence 995 9999999886
No 4
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=96.37 E-value=0.28 Score=36.83 Aligned_cols=89 Identities=10% Similarity=0.121 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHcCCCCcch-------HHHHHH----HHHH
Q 031495 51 DWGLSIFLCTIARSAGAMGYILTSSFLIRE-NILALITINIHASLTFIFSAAGVNIVPS-------MNVIYV----IFGT 118 (158)
Q Consensus 51 s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~-N~~~~~~~~~~~~l~~~~~~~G~~~~~~-------~~~i~~----~~p~ 118 (158)
|.++.+..|.++.+++-++.-+....+++. ||- ...+..+...|++ ++.+.+++.. .++-+. ....
T Consensus 62 sf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (163)
T PF13858_consen 62 SFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPD-FFENYIEAQIEEM-KESGSNPEMIEEQIEQELEMKESFSPFSLAF 139 (163)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHH-HHcccCHhhHHHHHHHHHHHHHhcCcHHHHH
Confidence 788999999999999998888888887776 873 3344444444444 5555443111 122222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 031495 119 LVLLNSGFFVFLLHLLYSVFLTR 141 (158)
Q Consensus 119 llv~~s~i~~~i~~~va~~vL~R 141 (158)
..++.+++.-++.=++...++||
T Consensus 140 ~~~~~~l~~G~i~sli~a~i~kk 162 (163)
T PF13858_consen 140 SGFISNLIFGFIISLIIALILKK 162 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555555555566666665
No 5
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=95.92 E-value=0.13 Score=40.45 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=32.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhc-c-----hHHHH-HHHHHHHHHHHHHHHHhhc
Q 031495 1 MRWGVAAGRKTMVATAMLLLVLSG-P-----VKALA-YLLTHGVLGFSMGSLWRLG 49 (158)
Q Consensus 1 ~R~g~k~~~~~~~va~lll~~l~G-p-----~~al~-~~l~fG~lGv~lG~~~~~~ 49 (158)
.|||.|+|...-++.+++ .++.| + ...+. +.+.|+.+|+ =|..+|++
T Consensus 44 ~~~Gp~~G~~~G~i~Gll-~~~~g~~~~~~p~q~~ldy~~a~~~iGl-aGl~~~~~ 97 (183)
T TIGR02357 44 FRRGLKAGLVAGLIWGLL-KIILGTAYILHPVQVLLDYILAFMALGL-AGVFRIKK 97 (183)
T ss_pred HHHccHHHHHHHHHHHHH-HHHhCCcccccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 389999997765555544 44445 3 34444 7899999999 78888765
No 6
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=93.76 E-value=1.2 Score=34.43 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 031495 4 GVAAGRKTMVATAMLLLVLS-GPVKALAYLLTHGVLGFSMGSLWRLGV-DWGLSIFLCTIARSAGAMGYILTSSFLIREN 81 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~-Gp~~al~~~l~fG~lGv~lG~~~~~~~-s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N 81 (158)
|..+|.....+++++-.++. |+..+. ..+-+.++.-|+.|||++ .++..+....-+..+|.++.+-+..+++|.+
T Consensus 46 GP~~g~~~a~i~~ll~~l~~~g~~~af---pg~~~~a~laGliyrk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~g~~ 122 (160)
T TIGR02359 46 GPWYALAVAFIIGLLRNTLGLGTVLAF---PGGMPGALLAGLLYRFGRKHYWASLGEILGTGIIGSLLAYPVAAWLLGSS 122 (160)
T ss_pred chHHHHHHHHHHHHHHHHhCCCchHHH---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 66677666666666654431 233333 366678888999999844 5567777888888899999999999998864
No 7
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=92.36 E-value=3.7 Score=30.92 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHHhhcCch
Q 031495 3 WGVAAGRKTMVATAMLLLVLSGPVKALAY-LLTHGVLGFSMGSLWRLGVDW 52 (158)
Q Consensus 3 ~g~k~~~~~~~va~lll~~l~Gp~~al~~-~l~fG~lGv~lG~~~~~~~s~ 52 (158)
.|.+.|.....++..+--++.|...-.++ .+..|+.|...|+.++|+++.
T Consensus 49 ~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~~~~ 99 (169)
T PF07155_consen 49 FGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKKKKK 99 (169)
T ss_pred HChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36777867655666666666655445555 899999999999999997433
No 8
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=91.74 E-value=4.2 Score=32.84 Aligned_cols=140 Identities=11% Similarity=-0.062 Sum_probs=67.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFL---I 78 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l---~ 78 (158)
|++.-....+.++..+......|-...+.+.++-=.+|..+-.-++..++.......+.+............+-.= .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 117 (290)
T PF09991_consen 38 KYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGINIFEQ 117 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 4444444444444444444455555555555555566666666666666655555555554444444444333211 1
Q ss_pred cccHHHHHHHHHHHHHHH----------HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031495 79 RENILALITINIHASLTF----------IFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTR 141 (158)
Q Consensus 79 g~N~~~~~~~~~~~~l~~----------~~~~~G~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~R 141 (158)
-.|-+++..++..+..++ ..++.....+-...+++...-...++.+.+..++...+.++.=++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~ 190 (290)
T PF09991_consen 118 LIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGIP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 122222333333332222 112222222344566666666666666666666666666555433
No 9
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=91.11 E-value=1.1 Score=35.10 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcc------h-HHHHHHHHHHHHHHHHHHHHh------hc----CchHHHHHHHHHHH
Q 031495 1 MRWGVAAGRKTMVATAMLLLVLSGP------V-KALAYLLTHGVLGFSMGSLWR------LG----VDWGLSIFLCTIAR 63 (158)
Q Consensus 1 ~R~g~k~~~~~~~va~lll~~l~Gp------~-~al~~~l~fG~lGv~lG~~~~------~~----~s~~~~~~~g~l~~ 63 (158)
.|||.|+|..+-++.++ +-.+.|| . .-+=|.++|+.+|+ -|.+-+ ++ ++....+....++.
T Consensus 40 ~r~G~~~G~~~G~l~Gl-l~~~~g~~~~~~p~q~llDY~laf~~lGl-aGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~~ 117 (177)
T PF09515_consen 40 FRRGWKAGILAGFLYGL-LQFLLGPAYIVHPVQVLLDYPLAFGALGL-AGLFAKPLQKTLKNNRYKKSYLNIILGTFIAV 117 (177)
T ss_dssp HHH-HHHHHHHHHHHHH-HHHHTT-S--SSHHHHHHHHTHHHHHGGG-GGGG-----------SSS--HHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH-HHHHhCCceehhHHHHHHHHHHHHHHHHH-HHhcccccchhhhhcccchhHHHHHHHHHHHH
Confidence 39999999887666665 5666776 1 22335778888887 344444 11 23344444444445
Q ss_pred HHHHHHHHHHHHHHhc
Q 031495 64 SAGAMGYILTSSFLIR 79 (158)
Q Consensus 64 l~~~~~~~~~s~~l~g 79 (158)
...++.-+..-..+++
T Consensus 118 ~~r~~~h~isGvif~~ 133 (177)
T PF09515_consen 118 FLRYFCHFISGVIFFG 133 (177)
T ss_dssp HHHHHHHHHHHHHH-G
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 10
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=90.65 E-value=5.1 Score=30.53 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=54.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHG---VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLI 78 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG---~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~ 78 (158)
..|.|.++.-.+.=.++.+++.|.+.+..+.+..+ ...++|..++|..+++...+..+......--+.|..+.+.++
T Consensus 39 ~~g~~~a~~v~~lR~~l~~l~~G~~~s~~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~giSi~Gai~HN~gQl~va~~i~ 118 (148)
T PF07456_consen 39 LLGFKEALLVALLRILLGSLLFGTLFSPSFLFSLAGGLLSLLVMALLKKLFKKKFSLIGISIAGAIAHNIGQLIVASLII 118 (148)
T ss_pred HcChhHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788887777777888899999986644444443 344566666666556666777777777777777887777765
Q ss_pred c
Q 031495 79 R 79 (158)
Q Consensus 79 g 79 (158)
+
T Consensus 119 ~ 119 (148)
T PF07456_consen 119 Q 119 (148)
T ss_pred c
Confidence 4
No 11
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=84.01 E-value=33 Score=31.21 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=67.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHh----cchHH----------------HHHHHHHHHHHHHHHHHHhhcCch--HHHHHHH
Q 031495 2 RWGVAAGRKTMVATAMLLLVLS----GPVKA----------------LAYLLTHGVLGFSMGSLWRLGVDW--GLSIFLC 59 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~----Gp~~a----------------l~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g 59 (158)
|.|+|++..+.++-...+..++ ||+|. ....+.|-..|++.|..-++-+|. ..-.+.-
T Consensus 259 kkgLr~Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks~~Dv~~~m~~ 338 (508)
T PRK11339 259 RFGLRIAGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLMIE 338 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHH
Confidence 4567776555454444444444 33322 146778889999999999955555 4444556
Q ss_pred HHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495 60 TIARSAGAMGYILTSSFLIRE----NILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHL 133 (158)
Q Consensus 60 ~l~~l~~~~~~~~~s~~l~g~----N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~ 133 (158)
+.-.+.+.++.......+... |.-..+ .-...+.++.+|.+..|.. ..++++++++.-|+.-.
T Consensus 339 g~~~m~~~ivl~F~~Aqfia~F~~snlG~il----av~gA~~L~~~~l~~~pl~-------i~~ill~a~iNlfI~Sg 405 (508)
T PRK11339 339 PMKEMAGFIVMVFPLAQFVAMFNWSNMGKFI----AVGLTDILESSGLSGIPAF-------VGLALLSSFLCMFIASG 405 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHH----HHHHHHHHHhCCCCchHHH-------HHHHHHHHHHHHccccH
Confidence 666666666665444443332 322222 2223334566776644443 56666777776665433
No 12
>PRK13661 hypothetical protein; Provisional
Probab=83.97 E-value=19 Score=28.29 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 031495 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG 49 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~ 49 (158)
|.+.|.....++..+--++.|--.=.++++..|+.|...|...+|+
T Consensus 52 Gp~~G~lvg~ig~~L~dll~G~~~w~~~ti~~gl~G~i~Gl~~~~~ 97 (182)
T PRK13661 52 GPVVGFLVGFIGHALKDFIAYGGPWWTWVLASGIIGLIIGLFKKRL 97 (182)
T ss_pred ChHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 5666666656666666555553233356788888999999877654
No 13
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=82.85 E-value=17 Score=27.06 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhcc---hHH---HHHHHHHHHHHHHHHHHHh--hcCchHH
Q 031495 3 WGVAAGRKTMVATAMLLLVLSGP---VKA---LAYLLTHGVLGFSMGSLWR--LGVDWGL 54 (158)
Q Consensus 3 ~g~k~~~~~~~va~lll~~l~Gp---~~a---l~~~l~fG~lGv~lG~~~~--~~~s~~~ 54 (158)
-|.+.|.....++.++-.++.+| ... +.+.+.-.+.|+.-|+++| |++++..
T Consensus 42 ~Gp~~G~~~g~i~~il~~l~~~~~~~~~~~~~~~~~l~~~l~gl~~g~~~~~~~~~~~~~ 101 (172)
T PF12822_consen 42 LGPVWGALVGFISDILSFLIFGGGGPFIFPGFPGFTLPAALFGLIAGLLYKKLKKKSKKR 101 (172)
T ss_dssp S-HHHHHHHHHHHHHHHHHH-TTT-SSHH---HHHHHHHHHHHHHHHHHHT--SS-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 37788877666666655555433 333 7788888899999999984 4445443
No 14
>COG5547 Small integral membrane protein [Function unknown]
Probab=81.41 E-value=9.8 Score=24.61 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=32.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG 49 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~ 49 (158)
||..-.+..+++.|.+++++ |=.+. .+++.++.+|+..|+.-+|+
T Consensus 8 kypIIgglvglliAili~t~--GfwKt-ilviil~~lGv~iGl~~~r~ 52 (62)
T COG5547 8 KYPIIGGLVGLLIAILILTF--GFWKT-ILVIILILLGVYIGLYKKRT 52 (62)
T ss_pred ccchHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 55555666777777777766 44444 46888999999999977764
No 15
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=80.97 E-value=35 Score=31.11 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHHHcCC
Q 031495 30 AYLLTHGVLGFSMGSLWRLGVDW--GLSIFLCTIARSAGAMGYILTSSFL----IRENILALITINIHASLTFIFSAAGV 103 (158)
Q Consensus 30 ~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~~s~~l----~g~N~~~~~~~~~~~~l~~~~~~~G~ 103 (158)
...+.|-..|+..|..-++-+|. ..--+.-..-.+.+..+.......+ -+=|+.+.+.....|. +++.|.
T Consensus 309 ii~~~Fli~givyG~~~g~ik~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~----L~~~~l 384 (513)
T TIGR00819 309 FIFLFFALPGIAYGIATRSIRGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADF----LEESGL 384 (513)
T ss_pred HHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHhcCC
Confidence 45677889999999988853333 3333344444555554444443332 2224443333333333 334454
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 031495 104 NIVPSMNVIYVIFGTLVLLNSGFFVFL 130 (158)
Q Consensus 104 ~~~~~~~~i~~~~p~llv~~s~i~~~i 130 (158)
+..+ .+..++++++++..|+
T Consensus 385 ~~~~-------~~i~~~l~~~~iNlfI 404 (513)
T TIGR00819 385 AGIP-------AFIGFALICAFICLFI 404 (513)
T ss_pred ChHH-------HHHHHHHHHHHHHhee
Confidence 4222 3445555555555544
No 16
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=80.60 E-value=45 Score=30.35 Aligned_cols=101 Identities=9% Similarity=-0.074 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 031495 30 AYLLTHGVLGFSMGSLWRLGVDWGLSI--FLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVP 107 (158)
Q Consensus 30 ~~~l~fG~lGv~lG~~~~~~~s~~~~~--~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~ 107 (158)
...+.|.+.|++.|..-.+-||..+.. +.-++-.+.++++.+...+++...==|..+-+-+.=.--..+++.|.+.
T Consensus 302 iI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~-- 379 (502)
T PF03806_consen 302 IIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPG-- 379 (502)
T ss_pred HHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCc--
Confidence 456788899999999999988886654 4667777778777777765554331111111111111122345566553
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495 108 SMNVIYVIFGTLVLLNSGFFVFLLHLLYSV 137 (158)
Q Consensus 108 ~~~~i~~~~p~llv~~s~i~~~i~~~va~~ 137 (158)
..++-.++++.+++.-|+.-.-++|
T Consensus 380 -----~~l~i~fill~a~iNLfi~S~SaKW 404 (502)
T PF03806_consen 380 -----IPLIIGFILLTAFINLFIGSASAKW 404 (502)
T ss_pred -----HHHHHHHHHHHHHHHHhhhcchhhH
Confidence 2244556777777777776555544
No 17
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=79.96 E-value=23 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhhcCc
Q 031495 21 VLSGPVKALAYLLTHGVLGFSMGSLWRLGVD 51 (158)
Q Consensus 21 ~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s 51 (158)
.+.||..+ |.+.|-......|+..+|+++
T Consensus 54 ~l~gPTgG--yl~gf~~~a~i~g~~~~~~~~ 82 (148)
T PF02632_consen 54 YLLGPTGG--YLLGFPLAALIIGLLAERLKR 82 (148)
T ss_pred HHhcCCCh--HHHHHHHHHHHHHHHHHhccc
Confidence 56788877 788888999999999888654
No 18
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=79.70 E-value=21 Score=27.29 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH-HHHHHHHhhcCchH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031495 4 GVAAGRKTMVATAMLLLVL-SGPVKALAYLLTHGVLG-FSMGSLWRLGVDWG-LSIFLCTIARSAGAMGYILTSSFLIRE 80 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l-~Gp~~al~~~l~fG~lG-v~lG~~~~~~~s~~-~~~~~g~l~~l~~~~~~~~~s~~l~g~ 80 (158)
|..++...+++++++--.+ .||+.+.| =+..| +.-|++|||.++.+ ..+.--.=+..+|-+..|-+..+++|.
T Consensus 43 GP~ya~~~Af~~sliR~~lg~Gt~lAfP----Gsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~ 118 (150)
T PF09512_consen 43 GPWYAVAMAFITSLIRNLLGTGTLLAFP----GSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGK 118 (150)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHhc----cchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 4455555556666665443 56665554 22333 34466777777633 333333334456666778888888886
Q ss_pred c
Q 031495 81 N 81 (158)
Q Consensus 81 N 81 (158)
+
T Consensus 119 ~ 119 (150)
T PF09512_consen 119 E 119 (150)
T ss_pred c
Confidence 5
No 19
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=79.65 E-value=23 Score=26.46 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCc--hHHHHHHHHHHHHHHHHHHHHHHH
Q 031495 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVD--WGLSIFLCTIARSAGAMGYILTSS 75 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s--~~~~~~~g~l~~l~~~~~~~~~s~ 75 (158)
+.|++..+..+.++.-.++.+|+ ++. .-...|..+++.+|+|.. .+++=......+..|.+..+.+..
T Consensus 60 ~s~~~~~ga~iG~IvG~f~~~p~-G~i---iG~~~Ga~l~El~~~~~~~~A~~~~~ga~~g~~~g~~~k~~~~~ 129 (140)
T PF04306_consen 60 ASRWGIWGAIIGGIVGFFVLPPL-GLI---IGPFLGAFLGELLRGKDFRRALRAGIGALVGFLAGTLIKLVLAL 129 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHH-HHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665455554444444443 321 223789999999666542 233333444455555555555443
No 20
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=77.35 E-value=27 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHhh
Q 031495 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTH---GVLGFSMGSLWRL 48 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~Gp~~al~~~l~f---G~lGv~lG~~~~~ 48 (158)
|..+|..+.++.++--..+-| ..+.+..+.. ++.+..+...+|+
T Consensus 59 G~~~~li~~~i~~~~R~~~gg-~~~~~~~i~~~~~~i~~~l~~~~~~~ 105 (169)
T PF07694_consen 59 GPISGLIAGLIIGIYRFLLGG-PTAIPAFIIIILIGILAGLISRFFRR 105 (169)
T ss_pred ChHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555565544444444444444 3333333333 3344444444444
No 21
>COG4720 Predicted membrane protein [Function unknown]
Probab=76.13 E-value=32 Score=27.05 Aligned_cols=80 Identities=23% Similarity=0.198 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHHHHhhcCch---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031495 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLL-THGVLGFSMGSLWRLGVDW---GLSIFLCTIARSAGAMGYILTSSFLIR 79 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~Gp~~al~~~l-~fG~lGv~lG~~~~~~~s~---~~~~~~g~l~~l~~~~~~~~~s~~l~g 79 (158)
|.|.|.+.-.+...+.=++.|-..=.++++ .+|..|...|+..||+... -..+..+.+..+...++-|.+...+..
T Consensus 52 Gs~~G~lvg~iG~al~Dll~gy~~W~~~tlv~~G~~g~i~g~~~k~~~~~~~~~~i~~~~~v~~~~~mv~~y~l~~~l~~ 131 (177)
T COG4720 52 GSRAGALVGGLGHALKDLLSGYPSWMFFTLVIHGLIGLIAGLFGKREMLSSGKKTIIWLGIVLGLAIMVGWYLLAPYLDY 131 (177)
T ss_pred cchHHHHHHHHHHHHHHHhcCCccHHHHHHHHhchhhhhhhhhhhhhhhccCcceeehhHHHHHHHHHHHHHHHHHHHhh
Confidence 566665655666666666664333344444 4599999999987776322 234457777888888888888887776
Q ss_pred ccHH
Q 031495 80 ENIL 83 (158)
Q Consensus 80 ~N~~ 83 (158)
.-+.
T Consensus 132 ~~~~ 135 (177)
T COG4720 132 LGWA 135 (177)
T ss_pred ccHH
Confidence 6433
No 22
>PRK03982 heat shock protein HtpX; Provisional
Probab=71.17 E-value=38 Score=28.01 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=16.7
Q ss_pred HHhcccHHHH-HHHHHHHHHHHHHHHcCCC
Q 031495 76 FLIRENILAL-ITINIHASLTFIFSAAGVN 104 (158)
Q Consensus 76 ~l~g~N~~~~-~~~~~~~~l~~~~~~~G~~ 104 (158)
...+--|.+. ...+.++.+|+..++.|.+
T Consensus 55 ~~~~~~~l~~~~~p~L~~~v~~la~~~g~~ 84 (288)
T PRK03982 55 ASYNARIVSEEEAPELYRIVERLAERANIP 84 (288)
T ss_pred HhcCCEECChhhhHHHHHHHHHHHHHcCCC
Confidence 3345544432 2346778888877776654
No 23
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=69.64 E-value=57 Score=26.26 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----HHHcCCCCcchHHHHHHHHHHHHHHHHH
Q 031495 51 DWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFI-----FSAAGVNIVPSMNVIYVIFGTLVLLNSG 125 (158)
Q Consensus 51 s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~-----~~~~G~~~~~~~~~i~~~~p~llv~~s~ 125 (158)
+.+..+..+..++.+.-++..+...+++|.|+- ...+...+|...- .+++|- .+.+...+.++.++
T Consensus 75 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~-~~~Sl~pkSVTtpiAi~is~~iGG--------~~sLta~~VvitGi 145 (215)
T PF04172_consen 75 KNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE-IILSLAPKSVTTPIAIEISEQIGG--------IPSLTAVFVVITGI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH-HHHHHHHHHhhHHHHHHHHHHhCC--------hHHHHHHHHHHHhh
Confidence 456666677777777777788888999999874 3556666666662 334553 23444555556655
Q ss_pred HHHHHHHHHHHHHHhhhCCC
Q 031495 126 FFVFLLHLLYSVFLTRLGMK 145 (158)
Q Consensus 126 i~~~i~~~va~~vL~Rlg~~ 145 (158)
+=+ .+..+++|++|.+
T Consensus 146 ~Ga----~~g~~llk~~~I~ 161 (215)
T PF04172_consen 146 LGA----VLGPPLLKLLRIK 161 (215)
T ss_pred HHH----HhHHHHHhHcccc
Confidence 544 4578899999885
No 24
>PRK03001 M48 family peptidase; Provisional
Probab=68.61 E-value=33 Score=28.32 Aligned_cols=77 Identities=5% Similarity=-0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHHcCCC
Q 031495 28 ALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALI-TINIHASLTFIFSAAGVN 104 (158)
Q Consensus 28 al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~-~~~~~~~l~~~~~~~G~~ 104 (158)
+......++.+.+..|+.+.....|...+..+.....+...+.=.+.--.+|--+.+.. ..+.++.+++..++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~p~L~~~v~~la~~~g~~ 83 (283)
T PRK03001 6 TAMLMAAITALFIVIGGMIGGSQGMLIALLFALGMNFFSYWFSDKMVLKMYNAQEVDENTAPQFYRMVRELAQRAGLP 83 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCCEECCccccHHHHHHHHHHHHHcCCC
Confidence 33344444455555555555544455554444444333333333333444444333211 125777777776666554
No 25
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=66.39 E-value=44 Score=23.74 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=50.6
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Q 031495 43 GSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFL--IRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120 (158)
Q Consensus 43 G~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l--~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~i~~~~p~ll 120 (158)
-+.+|+++|-..=+..+.++...+.++..-..-+. ..---.....+.++..+|+..|..+.+..|..+..+.++-+..
T Consensus 9 ~~a~~~E~~fr~~~~~~~~v~~~~~~l~~s~~ew~~li~~~~~Vl~~EllNTAIE~~vD~v~~~~~~~ak~aKD~aAaAV 88 (104)
T PF01219_consen 9 KFAFRTERNFRIHLVAAVLVLIAAFFLGLSPWEWALLILAIFLVLIAELLNTAIERLVDLVSPEYHPLAKRAKDIAAAAV 88 (104)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHTHHHHHHHHHTT----S-TTSHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcchhhcHHHHHHHHHHHHHH
Confidence 45677777776666677666666665543222111 1112223355666677777777677555688899999998888
Q ss_pred HHHHHHHHHHH
Q 031495 121 LLNSGFFVFLL 131 (158)
Q Consensus 121 v~~s~i~~~i~ 131 (158)
.+.++....+-
T Consensus 89 lv~~i~a~~v~ 99 (104)
T PF01219_consen 89 LVAAIFAVIVG 99 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777665543
No 26
>TIGR00804 nupC nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities.
Probab=65.38 E-value=99 Score=27.39 Aligned_cols=97 Identities=7% Similarity=0.084 Sum_probs=52.9
Q ss_pred HHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--H------cCCCCcc-hH
Q 031495 41 SMGSLWRLGVDW--GLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFS--A------AGVNIVP-SM 109 (158)
Q Consensus 41 ~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~--~------~G~~~~~-~~ 109 (158)
.++|++.++++. |+.+.. +..+++.+...++....-....+.+.+.+++.++ + +|-...+ ..
T Consensus 12 ~ia~l~S~nRk~I~wr~V~~-------gl~lQ~~la~~vl~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvFG~l~~~~~f 84 (401)
T TIGR00804 12 LIAFLCSSNKKAISWRTVVS-------ALVLQFLLGLIVLRTPPGFWAFQGLADQIQILLSYANEGSSFVFGPPLVQDLF 84 (401)
T ss_pred HHHHHHhCCCCcCCchHHHH-------HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhCceeecCccccccce
Confidence 345556544432 665544 4456777777777666555555555555555433 1 3422122 23
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhCC
Q 031495 110 NVIYVIFGTLVLLNSGFFVF--------LLHLLYSVFLTRLGM 144 (158)
Q Consensus 110 ~~i~~~~p~llv~~s~i~~~--------i~~~va~~vL~Rlg~ 144 (158)
-..-.++|.++++++++..+ ++..+++.+=|-+|.
T Consensus 85 iFaf~vLp~IiFfsal~siLyylgimq~iV~~~g~~l~k~~g~ 127 (401)
T TIGR00804 85 VFAFQVLPIIIFFSALISILYYLGIMQWVIRKIGWFLQKAMGT 127 (401)
T ss_pred eeHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 34556788888888876553 444444444444444
No 27
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=63.55 E-value=64 Score=24.60 Aligned_cols=75 Identities=13% Similarity=-0.027 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 031495 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIREN 81 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N 81 (158)
|.|.|+......+++.+... -....+.+..=..|.+-.+.-||.+++.+.+-.|..+++.+.+ .......+.|.+
T Consensus 81 ~~~~ai~~~~~~sl~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~R~~~i~ag~~v~l~~~~-~~l~~~l~~~~~ 155 (194)
T PF07698_consen 81 DPRLAILASLFLSLLASLLF--GFDFEFFLYSLVSGIVAIFSVRRIRSRSDIIKAGLLVGLVNAL-MILALGLIQGSS 155 (194)
T ss_pred cchHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 34555444444444444432 1234444444456666677788888999999999999988884 334444454555
No 28
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=57.55 E-value=22 Score=26.92 Aligned_cols=58 Identities=14% Similarity=-0.144 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q 031495 30 AYLLTHGVLGFSMGSLWRLGV-DWGLSIFLCTIARSAGAMGYILTSSFLIRENILALIT 87 (158)
Q Consensus 30 ~~~l~fG~lGv~lG~~~~~~~-s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~ 87 (158)
|+...||..++.+-...++-+ +++.....+++..+.-=.+.-.+.-+.+|.++|++..
T Consensus 35 P~~piYG~g~vl~~~~~~~~~~~~~~~f~~~~i~~t~lEyi~g~~le~~~~~~~WDYS~ 93 (157)
T PF06541_consen 35 PFCPIYGFGAVLLILLLRPLRRSPILLFLLGMILITALEYITGWILEKLFGARWWDYSD 93 (157)
T ss_pred cHHHHHhHHheeeHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCccCcCCC
Confidence 456789998888765555544 7788888777766665556666777788888887654
No 29
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=57.10 E-value=84 Score=24.85 Aligned_cols=59 Identities=17% Similarity=0.028 Sum_probs=41.5
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031495 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIR 79 (158)
Q Consensus 20 ~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g 79 (158)
+++..+-.+..+.+..|+.+- +-.+.||+++.+.++..+.....+|.++--++..++-.
T Consensus 108 ~~~~~~~~~~~l~Lal~~~~~-iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 108 SLLFPAASGPGLQLALGLGAC-IYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred HHHHcCCCCcchHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444445556666666665544 44778999999999999999888888877776655543
No 30
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=55.00 E-value=1e+02 Score=24.09 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 031495 119 LVLLNSGFFVFLLHLLYSVFLTRL 142 (158)
Q Consensus 119 llv~~s~i~~~i~~~va~~vL~Rl 142 (158)
..+...++-+++-=.+.++++||.
T Consensus 163 ~~~~~t~v~~~iG~~iG~kllkKH 186 (189)
T TIGR02185 163 IMIVLTAVAGIAGVLIGKKLLKKH 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567777888888999999984
No 31
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=53.91 E-value=1.5e+02 Score=25.91 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Q 031495 32 LLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAG 66 (158)
Q Consensus 32 ~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~ 66 (158)
.+.|...++.+....|+|.+++..+...+++..+.
T Consensus 4 ~~g~~~~~~~~~l~~~~k~~~~~al~~~~~~~~~~ 38 (431)
T TIGR00784 4 ILGFSMMTVFMILIMTKRLSPLVALTITPIVFALI 38 (431)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 45777888888888889889988887766654443
No 32
>TIGR03426 shape_MreD rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples.
Probab=53.55 E-value=87 Score=22.95 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=38.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh--cCchHHHHHHHHHHHHHH
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRL--GVDWGLSIFLCTIARSAG 66 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~--~~s~~~~~~~g~l~~l~~ 66 (158)
++|.|.+....+..|++.=++.|...+. .++.+...+...|...|| +++.+.......+...+.
T Consensus 44 ~~~~~~~~~~~f~~Gll~D~~~~~~lG~-~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (154)
T TIGR03426 44 ALPHRVGIGTAFVLGLLQDVLSGSPLGV-HALALSLVAYLAASKFQRFRQFSLWQQALIIFLLLILL 109 (154)
T ss_pred hcccccchHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3456666666677888886666666554 577777888888665443 334444444433333333
No 33
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=53.24 E-value=59 Score=24.60 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 031495 9 RKTMVATAMLLLVLSGPVKA-LAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARS 64 (158)
Q Consensus 9 ~~~~~va~lll~~l~Gp~~a-l~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l 64 (158)
+.+.++++++-+..=.+... .......-..|+..|+.++|.+|-+.++..=++...
T Consensus 156 ~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~~i~~H~~~N~ 212 (226)
T COG1266 156 LLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWVPILLHALINL 212 (226)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 34456667666665555443 566667779999999999999988888776666554
No 34
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=51.86 E-value=53 Score=25.88 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcCc
Q 031495 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGVD 51 (158)
Q Consensus 20 ~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s 51 (158)
..+.||..+ |.+.|-+.....|++.+|.++
T Consensus 82 ~~~~GPTgG--yL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 82 AVLFGPTGG--YLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred eeeecCchh--HHHHHHHHHHHHHHHHHhhhc
Confidence 346788887 788888889999999888775
No 35
>TIGR00346 azlC 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD.
Probab=49.58 E-value=1.4e+02 Score=24.06 Aligned_cols=60 Identities=15% Similarity=0.310 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHH
Q 031495 27 KALAYLLTHGVLGFSMGSLWRL-GVDWGLSIFLCTIARSAGAMGYILTSSFL-IRENILALITI 88 (158)
Q Consensus 27 ~al~~~l~fG~lGv~lG~~~~~-~~s~~~~~~~g~l~~l~~~~~~~~~s~~l-~g~N~~~~~~~ 88 (158)
.++|..+.|-..|+..|....+ +.|++++...+.+++..+- |+.....+ -|-++++...+
T Consensus 8 ~~lPi~lgyip~G~afGila~~~Gls~~~a~lmS~~vfAGaa--Qf~~v~ll~~g~~~~~i~lt 69 (221)
T TIGR00346 8 YTIPILAGFLFLGIAYGILMVQLGFDYKYPLFMSLFIYAGSV--EFVAATLLSAQFSPMNVLIV 69 (221)
T ss_pred HhChHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhHH--HHHHHHHHHcCCcHHHHHHH
Confidence 4678888899999999988654 5699999999988887764 44444443 35555554433
No 36
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=48.70 E-value=1.5e+02 Score=24.33 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHcCCCCcch-
Q 031495 31 YLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTF-IFSAAGVNIVPS- 108 (158)
Q Consensus 31 ~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~-~~~~~G~~~~~~- 108 (158)
.++++|..+-..-.++. -.|.... .+..++.+++.++..+. .....|.+.+....+..+.-- .+..+|.+..++
T Consensus 128 ~~~~~g~~~~~f~~l~g--G~w~d~~-iaf~~~~~~~~~~~~l~-r~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~ 203 (250)
T COG2966 128 VLLMAGLAAAAFALLFG--GGWLDFL-IAFFAGLLGFLLRQYLS-RKGNPDFFFEVLASFIASIVAVLFGSLGLGITPDA 203 (250)
T ss_pred HHHHHHHHHHHHHHHcC--CchHHHH-HHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHHHHccccCCchH
Confidence 34555555555444443 3444444 44445555555555565 666666655554444443333 344556655555
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495 109 --MNVIYVIFGTLVLLNSGFFVFLLHLLYS 136 (158)
Q Consensus 109 --~~~i~~~~p~llv~~s~i~~~i~~~va~ 136 (158)
..-+-.+.|...+.|++.+..--|+++.
T Consensus 204 ~i~~si~~lvPG~~l~nav~dl~~g~~~~G 233 (250)
T COG2966 204 LIIGSIMLLVPGVPLTNAVRDLLSGHLVAG 233 (250)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHcCcchHH
Confidence 3555677788999999999988887764
No 37
>PRK03072 heat shock protein HtpX; Provisional
Probab=48.41 E-value=1.6e+02 Score=24.47 Aligned_cols=44 Identities=9% Similarity=-0.093 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHcCCCC
Q 031495 60 TIARSAGAMGYILTSSFLIR-------ENILALITINIHASLTFIFSAAGVNI 105 (158)
Q Consensus 60 ~l~~l~~~~~~~~~s~~l~g-------~N~~~~~~~~~~~~l~~~~~~~G~~~ 105 (158)
.+...+..++.++.+.++.- ++|-+ -.++++.++++.++.|.+.
T Consensus 37 ~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~--~p~L~~~v~~la~~~g~p~ 87 (288)
T PRK03072 37 VLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQ--APAMYRIVRELSTAARQPM 87 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCEECChhh--hHHHHHHHHHHHHHcCCCC
Confidence 33444445566666666533 23332 2477788888777766654
No 38
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=47.17 E-value=1.6e+02 Score=24.07 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=23.0
Q ss_pred HHHcCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495 98 FSAAGVNIVPS--MNVIYVIFGTLVLLNSGFFVFLLHLLY 135 (158)
Q Consensus 98 ~~~~G~~~~~~--~~~i~~~~p~llv~~s~i~~~i~~~va 135 (158)
.+..|.+..+- -..++...|.++...+.-........+
T Consensus 164 Ara~G~s~~~i~~~hiLP~~~p~ii~~~~~~~~~~il~~a 203 (272)
T PRK10417 164 ARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVA 203 (272)
T ss_pred HHHcCCCchhhHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44688765433 256788888777666665554444444
No 39
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=47.00 E-value=1.4e+02 Score=23.54 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 031495 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLT 95 (158)
Q Consensus 27 ~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~ 95 (158)
|-...++..-..+...++++||+.+| .....+....+.+.+.=.|+.+...++-.+-+|
T Consensus 157 R~~~~~~~~~~~~~~l~~~~r~~~~~----------~i~~~~~~~~l~~~~~P~~~~~is~~sQ~~Rl~ 215 (217)
T PF13687_consen 157 RYYALLLAIFLLIYALYYIFRKRQRW----------YIPLSLAILLLLSSFGPLDPFRISVNSQLARLE 215 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccc----------HHHHHHHHHHHHHHhCCCCHHHHhHHHHHHHHh
Confidence 44444555556778888999888777 111122223333444448888765554444333
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.74 E-value=29 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHhhcCch
Q 031495 27 KALAYLLTHGVLGFSM--GSLWRLGVDW 52 (158)
Q Consensus 27 ~al~~~l~fG~lGv~l--G~~~~~~~s~ 52 (158)
.++.+..++|++|+.+ -|+.||+++.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555556555554 4555554433
No 41
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=45.56 E-value=24 Score=24.10 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=26.9
Q ss_pred CcchhHHHHHHHHHHHHHH-HHhcchH-----------HHHHHHHHHHHHHHHHHHHhhcCc
Q 031495 2 RWGVAAGRKTMVATAMLLL-VLSGPVK-----------ALAYLLTHGVLGFSMGSLWRLGVD 51 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~-~l~Gp~~-----------al~~~l~fG~lGv~lG~~~~~~~s 51 (158)
|+|.+.|+.+.+.+++... ...-|.. -......|=..|+..|++-.|.|+
T Consensus 43 ~~G~~~gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~va~v~g~l~~~~r~ 104 (105)
T PF13493_consen 43 RYGLRPGLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDWITFAVFLVVALVTGYLADRYRR 104 (105)
T ss_dssp HHSS---SHHHHHHHHHHHHTTS-SS----TT-SS-HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCCccccchhhcChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888777666666553 2332322 234555666788888887766553
No 42
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=44.60 E-value=1.5e+02 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031495 118 TLVLLNSGFFVFLLHLLYSVFLTRL 142 (158)
Q Consensus 118 ~llv~~s~i~~~i~~~va~~vL~Rl 142 (158)
...+...++-+++--.+.++++||.
T Consensus 159 ~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 159 IIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677788888889999999984
No 43
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=43.99 E-value=1.7e+02 Score=23.64 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHHHHHHHhc--chHHHH-HHHHHHHHHHHHHHHHhhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031495 4 GVAAGRKTMVATAMLLLVLSG--PVKALA-YLLTHGVLGFSMGSLWRLGVD--WGLSIFLCTIARSAGAMGYILTSSFLI 78 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~G--p~~al~-~~l~fG~lGv~lG~~~~~~~s--~~~~~~~g~l~~l~~~~~~~~~s~~l~ 78 (158)
|++.|.....++-++-.++.| .+.++. -.+..+..+...+|+.+|..+ ...-..++.+....+.++.....+.-+
T Consensus 79 Gp~~a~la~~l~lllqal~fg~GGi~~LG~N~l~ma~v~~~~~y~i~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (230)
T PRK11909 79 GPWAAVISISVALVIQALLFGDGGITAIGANCFNMAFVLPFVGYYVYKLLSILKVRRVIASAIGGYVGINAAALATGIEF 158 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555565554455444455443 333332 333556666666776554421 112234455555556555555555444
Q ss_pred cc
Q 031495 79 RE 80 (158)
Q Consensus 79 g~ 80 (158)
++
T Consensus 159 ~~ 160 (230)
T PRK11909 159 GL 160 (230)
T ss_pred Hh
Confidence 44
No 44
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=42.90 E-value=94 Score=20.29 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 031495 9 RKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIF 57 (158)
Q Consensus 9 ~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~ 57 (158)
..+.++++++-+..=.+. +.. .+.....|+..|+.+.|.+|-+..+.
T Consensus 37 ~~a~~is~~~f~~~H~~~-~~~-~~~~~~~g~~~~~~~~~t~sl~~~i~ 83 (91)
T PF02517_consen 37 WFAILISSLLFALWHLPN-GPQ-FIYAFLFGLLFGYLYLRTGSLWAAII 83 (91)
T ss_pred HHHHHHHHHHHHHHHHhh-hHH-HHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 344456666555544443 333 67778999999999999888665554
No 45
>TIGR00271 uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.
Probab=42.50 E-value=92 Score=24.32 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 031495 12 MVATAMLLLVLSGPVKALAYLLTHGVLGFSMGS 44 (158)
Q Consensus 12 ~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~ 44 (158)
.++.+++++=+|||+.+. ..|...|.
T Consensus 29 vIIGAMlIaPLmgPi~a~-------a~g~~~gd 54 (175)
T TIGR00271 29 LIIGAMIIAPLLGPIAGS-------AVGLVVGD 54 (175)
T ss_pred HHHHHHHHHHhHhHHHHH-------HHHHHhCc
Confidence 578889999999998887 34555555
No 46
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=42.24 E-value=1.6e+02 Score=22.90 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 031495 121 LLNSGFFVFLLHLLYSVFLTRLGMKASL 148 (158)
Q Consensus 121 v~~s~i~~~i~~~va~~vL~Rlg~~~~p 148 (158)
++..++.+.+.|.....++-|+|.++.|
T Consensus 147 i~~~~ilt~~lH~~~N~i~Y~LglK~vp 174 (175)
T PF01864_consen 147 IIIILILTPLLHLGTNIIAYKLGLKKVP 174 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3445677788999999999999998554
No 47
>PRK09881 D-ala-D-ala transporter subunit; Provisional
Probab=41.85 E-value=2e+02 Score=23.85 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHcCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCcHH
Q 031495 97 IFSAAGVNIVPS--MNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRW 153 (158)
Q Consensus 97 ~~~~~G~~~~~~--~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~~P~~ 153 (158)
..+.+|.+.-.- -..++.+.|.++.....-. ..-++..-.|.=+|.-.-|+-|.|
T Consensus 190 aAra~G~s~~~ii~~hiLPn~lp~il~~~~~~~--~~ail~ea~LsflGlG~~~~~~~w 246 (296)
T PRK09881 190 AAKTFGASRWHLISWHILRNSLPPLIVQASLDI--GSAILMAATLGFIGLGAQQPSAEW 246 (296)
T ss_pred HHHHcCcCcceeeehhhHHhhHHHHHHHHHHHH--HHHHHHHHHHhhCcCCCCCCCCCH
Confidence 455688765433 3677888887766544433 345555556666666312344555
No 48
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=41.34 E-value=2e+02 Score=23.59 Aligned_cols=103 Identities=16% Similarity=0.039 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhcC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCcchHH
Q 031495 35 HGVLGFSMGSLWRLGV----DWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMN 110 (158)
Q Consensus 35 fG~lGv~lG~~~~~~~----s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~ 110 (158)
.|..=++++.=.+||+ +-|..+..|.+++...-+..-+...+++|-|+-. ..+.+-+|...-++ ++..+++.
T Consensus 68 LgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~-~~Sl~PkSvTTpiA---m~vs~~iG 143 (230)
T COG1346 68 LGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPEL-ILSLLPKSVTTPIA---MEVSESIG 143 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHhcccccccHHH---HHHHHhcC
Confidence 3444455555444443 4467777888887777778888899999998643 33344444444211 01112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031495 111 VIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMK 145 (158)
Q Consensus 111 ~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~ 145 (158)
-++.+....++++++ +-.++...++|+++.+
T Consensus 144 Gip~ltav~Vi~tGi----~Gavlg~~llk~~~i~ 174 (230)
T COG1346 144 GIPALTAVFVILTGI----LGAVLGPLLLKLLRIR 174 (230)
T ss_pred CchHHHHHHHHHHHH----HHHHHHHHHHHHhccC
Confidence 233344455555554 4556778889998875
No 49
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.21 E-value=32 Score=23.49 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhc
Q 031495 24 GPVKALAYLLTHGVLGFSMGSLWRLG 49 (158)
Q Consensus 24 Gp~~al~~~l~fG~lGv~lG~~~~~~ 49 (158)
-|..++- +.+| .|+.+|++++|+
T Consensus 72 ~P~~svg--iAag-vG~llG~Ll~RR 94 (94)
T PF05957_consen 72 NPWQSVG--IAAG-VGFLLGLLLRRR 94 (94)
T ss_pred ChHHHHH--HHHH-HHHHHHHHHhCC
Confidence 4777753 3333 788889988875
No 50
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=40.47 E-value=2.2e+02 Score=25.79 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=32.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHH------------HHHHHHHHHHHHhhc
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLT------------HGVLGFSMGSLWRLG 49 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~------------fG~lGv~lG~~~~~~ 49 (158)
+=|+|.++.+.++.++++++ +|...+|..=. |+..|..+|...+..
T Consensus 366 tGG~RGAiig~fv~Glii~f--lpa~~~p~lg~~g~~~~tf~d~Df~~~g~~lg~~~~~~ 423 (463)
T PRK12996 366 TGGRRGAMIGAFANGLLITF--LPVLLLPVLGAIGFANTTFSDADFGVIGILLGNLARYL 423 (463)
T ss_pred ccchHHHHHHHHHHHHHHHH--HHHHHHHHHHhccccccccCcccHHHHHHHHHHHHHhh
Confidence 34688888888999998877 55555554333 457788888877765
No 51
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=39.85 E-value=1e+02 Score=20.08 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=22.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcchHHHHHH----HHHHHHHHHHHH
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYL----LTHGVLGFSMGS 44 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~----l~fG~lGv~lG~ 44 (158)
|...|.. ++.+.+-+-+.-+.+-++++.|- +.||...+..|-
T Consensus 3 r~~~Riv-lAtiavFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv 48 (62)
T PF11177_consen 3 RSEYRIV-LATIAVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGV 48 (62)
T ss_pred cchhHHH-HHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Confidence 4555554 43344444455566666666553 556655555553
No 52
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=39.65 E-value=89 Score=26.85 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcchHHH
Q 031495 12 MVATAMLLLVLSGPVKAL 29 (158)
Q Consensus 12 ~~va~lll~~l~Gp~~al 29 (158)
.++.+++++=+|||+.++
T Consensus 138 vIIGAMlIaPlmgPi~a~ 155 (325)
T TIGR00341 138 ILIGAMIIAPLLGPIHGF 155 (325)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 467888888888887776
No 53
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=39.55 E-value=89 Score=21.70 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 031495 37 VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFI 97 (158)
Q Consensus 37 ~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~ 97 (158)
.+|.+.|++.+| .+....+..|... ..+++.-+.=+..+| |+.+.+..++..|+.
T Consensus 7 ~~G~~~G~~~kK-~~k~~a~~~G~~~----l~lq~l~~~G~i~Vn-w~kl~~~~~~~~~~~ 61 (100)
T PF04930_consen 7 VSGLCAGYAIKK-VSKLAAFLVGGGF----LLLQYLASKGYIKVN-WDKLEKDVKKALDQN 61 (100)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHCCeEEEC-HHHHHHHHHHHHHhh
Confidence 789999999988 4444433333322 234555555556666 333555555555544
No 54
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=39.07 E-value=2.2e+02 Score=23.33 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhcC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----HHHcC
Q 031495 32 LLTHGVLGFSMGSLWRLGV----DWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFI-----FSAAG 102 (158)
Q Consensus 32 ~l~fG~lGv~lG~~~~~~~----s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~-----~~~~G 102 (158)
.+..|..=++++.=.+||+ +.+..+..|.+++...-++..+...+++|.|.- ...+..-+|...- .|++|
T Consensus 68 ~~lLgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~-~~~Sl~pKSVTtPIAm~is~~iG 146 (232)
T PRK04288 68 SFFLEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA-VMASMLPQAATTAIALPVSAGIG 146 (232)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH-HHHHHhhHhhhHHHHHHHHHHhC
Confidence 3444555555555555543 456667777777777777888888999999973 3445555555552 23444
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031495 103 VNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMK 145 (158)
Q Consensus 103 ~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~ 145 (158)
=++.+.....++.+++ -..++.+++|+++.+
T Consensus 147 --------G~psLtA~~ViitGi~----Gai~g~~llk~~~I~ 177 (232)
T PRK04288 147 --------GIKEITSFAVIFNAVI----IYALGAKFLKLFRIK 177 (232)
T ss_pred --------CcHHHHHHHHHHHHHH----HHHHHHHHHHHcCCC
Confidence 2344455555555554 456778889998875
No 55
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=39.07 E-value=3.1e+02 Score=25.11 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------
Q 031495 31 YLLTHGVLGFSMGSLWRLGVDWGL--SIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTF------------ 96 (158)
Q Consensus 31 ~~l~fG~lGv~lG~~~~~~~s~~~--~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~------------ 96 (158)
+.+.|-+-|++.|..-+.-||--+ -.+.-+.-.+.++++..... .|+-..++|
T Consensus 315 i~~~FlipGlvYG~vtgtik~~kDvv~~M~~~m~sMg~yiV~~Ffa-------------aQFva~FnwSn~G~~~AV~GA 381 (516)
T COG2978 315 IFLLFLIPGLVYGRVTGTIKNDKDVVNMMAESMSSMGGYIVIAFFA-------------AQFVAFFNWSNLGTIMAVKGA 381 (516)
T ss_pred HHHHHHHhhhhhheeeeeeeccHHHHHHHHHHHHHhhhHHHHHHHH-------------HHHHHHhcccccchhheechH
Confidence 456677889999887776665433 34455565666655544433 333344444
Q ss_pred -HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495 97 -IFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYS 136 (158)
Q Consensus 97 -~~~~~G~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~va~ 136 (158)
.++..|++..+ ++...++++|++..++--.=|+
T Consensus 382 ~~L~~~gl~g~~-------lil~~illsa~inL~IgSASAk 415 (516)
T COG2978 382 DFLKAIGLTGLP-------LILGFILLSAFINLFIGSASAK 415 (516)
T ss_pred hHHHHcCCCCcH-------HHHHHHHHHHHHHHHHhhHHHH
Confidence 23445544332 3456677777777776554443
No 56
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=38.07 E-value=87 Score=22.14 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Q 031495 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIAR 63 (158)
Q Consensus 27 ~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~ 63 (158)
+-..=.+.|.++|..+.+.++|.+++...+..+.+.+
T Consensus 53 ~~~~hi~~f~plG~l~~~~~~~~~~~~~~~~~~~~~s 89 (133)
T PF04892_consen 53 DKIGHILLFFPLGFLLPLLFRRLRSWLLAILIGFLFS 89 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3444567788889999998988677777776666544
No 57
>PF15050 SCIMP: SCIMP protein
Probab=37.48 E-value=81 Score=23.45 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 031495 111 VIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGM 144 (158)
Q Consensus 111 ~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~ 144 (158)
-++.++-..|++.|+...+|.|-+.++.||+=+.
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3566777779999999999999999999987543
No 58
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.54 E-value=1.5e+02 Score=24.18 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Q 031495 37 VLGFSMGSLWRLGVDWGLSIFLCTIARSAGA 67 (158)
Q Consensus 37 ~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~ 67 (158)
.+++.+|.++. +||..++.|.+..++..
T Consensus 40 ~v~v~ig~l~~---~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 40 AVFVLIGLLFG---SWWYWLIIGILLGLLAA 67 (224)
T ss_pred HHHHHHHHHHc---cHHHHHHHHHHHHHHHH
Confidence 44666666666 67777777766444433
No 59
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=36.10 E-value=3.4e+02 Score=24.74 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHcCCCCcchHH--HHHHHHHHHHHHHHHHHHHH
Q 031495 79 RENILALITINIHASLTFIFSAAGVNIVPSMN--VIYVIFGTLVLLNSGFFVFL 130 (158)
Q Consensus 79 g~N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~--~i~~~~p~llv~~s~i~~~i 130 (158)
..-...-..+|.++++|+...++|.+.-+.+. ..+.+.|.++ .+..++|+
T Consensus 423 a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~--~a~~l~F~ 474 (540)
T COG1178 423 AVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLL--AAAALVFA 474 (540)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHcCCcHhhHhHHhhhhcchHHHH--HHHHHHHH
Confidence 33334445566777777777788876533322 2344555543 34444444
No 60
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=34.87 E-value=1.8e+02 Score=21.34 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhC
Q 031495 119 LVLLNSGFFVFLLHLLYSVFLTRLG 143 (158)
Q Consensus 119 llv~~s~i~~~i~~~va~~vL~Rlg 143 (158)
--++.+++...+.|.+.+.+.|+..
T Consensus 123 G~~i~~~v~~~i~Y~l~~~~~~~~r 147 (154)
T PF09835_consen 123 GSLILGIVLGIISYFLVYFLVRKYR 147 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888753
No 61
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=34.86 E-value=1.4e+02 Score=19.88 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=30.5
Q ss_pred HHHHHHhhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q 031495 41 SMGSLWRLGVD--WGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIF 98 (158)
Q Consensus 41 ~lG~~~~~~~s--~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~ 98 (158)
.++|+.+++++ +|+.+. .+..+++.+...+++...-....+.+.+.+++.+
T Consensus 8 ~ia~l~S~~rk~I~wr~V~-------~gl~lQ~~la~~vl~~~~G~~~~~~i~~~~~~ll 60 (75)
T PF01773_consen 8 AIAWLFSENRKAIKWRTVI-------WGLGLQFVLALFVLKTPAGRDAFEWISDGFTALL 60 (75)
T ss_dssp HHHHHH-S-GGG--HHHHH-------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcCChHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555554443 366654 4456888888888888776666666666665543
No 62
>PRK09459 pspG phage shock protein G; Reviewed
Probab=34.21 E-value=1.5e+02 Score=20.11 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCc
Q 031495 10 KTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVD 51 (158)
Q Consensus 10 ~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s 51 (158)
+++...+.++-.+.|=.....-++|.=++-++-=|+||+.++
T Consensus 25 ~aAl~va~~vM~l~Gm~~lviKLLPWLil~~v~vW~~r~~~~ 66 (76)
T PRK09459 25 IAALGVATLVMFLGGMFALMIKLLPWLLLAVVVVWVIRAIKA 66 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444455555555555666666666666677776444
No 63
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=33.54 E-value=95 Score=22.52 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031495 53 GLSIFLCTIARSAGAMGYILTSSFLIR 79 (158)
Q Consensus 53 ~~~~~~g~l~~l~~~~~~~~~s~~l~g 79 (158)
|+++..+....++|.++.+.-...+++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999877776655554
No 64
>PRK09928 choline transport protein BetT; Provisional
Probab=33.50 E-value=4.3e+02 Score=25.15 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhcCch
Q 031495 33 LTHGVLGFSMGSLWRLGVDW 52 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~~s~ 52 (158)
-.|++.|+.+||+.+||+.+
T Consensus 154 AiYalvglalAYf~yr~~~p 173 (679)
T PRK09928 154 SMYALMGMALGYFSYRYNLP 173 (679)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 35899999999999887766
No 65
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=33.46 E-value=3.3e+02 Score=23.81 Aligned_cols=29 Identities=31% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHH-H-HHHHHHHHHHhhhCCC
Q 031495 117 GTLVLLNSGFFV-F-LLHLLYSVFLTRLGMK 145 (158)
Q Consensus 117 p~llv~~s~i~~-~-i~~~va~~vL~Rlg~~ 145 (158)
+.++-+.-+++. + +.+-+.+++.||.|.+
T Consensus 105 ~~ilgi~~f~~~~~vil~Pi~~~l~~~~g~s 135 (440)
T TIGR00791 105 GLIVGLALFFEVGFVLLIPLVFSIAAEAKIS 135 (440)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 443333333333 4 7888889999998874
No 66
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=33.22 E-value=3.5e+02 Score=24.02 Aligned_cols=101 Identities=5% Similarity=0.043 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 031495 38 LGFSMGSLWRLGVDWGLSI--FLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVI 115 (158)
Q Consensus 38 lGv~lG~~~~~~~s~~~~~--~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~i~~~ 115 (158)
-++.+|.+.+|+.+|-+.. ...+.-.+....+....+..+-.. ...++..|.+.+.+..++ .+....+-.+
T Consensus 247 yal~v~~~iyr~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~----lt~~gvp~~i~~~i~~~~---~~~~~~Ll~i 319 (425)
T PRK15060 247 YALFVAVVIYREMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWL----ITIAELPMMVSDLLQPLV---DSPRLLFIVI 319 (425)
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcChHHHHHHHHHHcC---CCHHHHHHHH
Confidence 3445677777777764332 233333333333333333322221 122233344444444433 2223344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhhCCC
Q 031495 116 FGTLVLLNSGFFVFLLHLLYSV----FLTRLGMK 145 (158)
Q Consensus 116 ~p~llv~~s~i~~~i~~~va~~----vL~Rlg~~ 145 (158)
.-.++++..+.+..-.+++..| +.+++|.|
T Consensus 320 ~~~~lvlGmfld~~a~ili~~Pil~Pi~~~~Gid 353 (425)
T PRK15060 320 MVAIMVVGMVMDLTPTVLILTPVLMPLVKEAGID 353 (425)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 5556667777777776666554 45888887
No 67
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=32.97 E-value=2e+02 Score=21.21 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHH
Q 031495 30 AYLLTHGVLGFSMGSLWRL-GVDWGLSIFLCTIARSAGA 67 (158)
Q Consensus 30 ~~~l~fG~lGv~lG~~~~~-~~s~~~~~~~g~l~~l~~~ 67 (158)
|..+.+...|+..|.+-++ +.+++++...+.+++..+-
T Consensus 2 Pi~lg~~~~G~~fG~la~~~G~~~~~~~~mS~lvfaGa~ 40 (143)
T PF03591_consen 2 PIALGYIPFGIAFGVLAVEAGFSWWEAILMSLLVFAGAA 40 (143)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhHH
Confidence 5677888888888888776 5799999999988887664
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=32.87 E-value=3e+02 Score=24.89 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=9.5
Q ss_pred HHHHHHHhhcCchH
Q 031495 40 FSMGSLWRLGVDWG 53 (158)
Q Consensus 40 v~lG~~~~~~~s~~ 53 (158)
+.+|..|||-.++.
T Consensus 447 lllgl~Wkr~n~~G 460 (549)
T TIGR02711 447 ILLSMYWSKLTTRG 460 (549)
T ss_pred HHHHHhcCCCCHHH
Confidence 57899888744443
No 69
>PRK15038 autoinducer 2 import system permease LsrD; Provisional
Probab=32.23 E-value=3.1e+02 Score=23.14 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHH
Q 031495 7 AGRKTMVATAMLLLVLSGPV-KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARS-AGAMGYILTSSFLIRENILA 84 (158)
Q Consensus 7 ~~~~~~~va~lll~~l~Gp~-~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l-~~~~~~~~~s~~l~g~N~~~ 84 (158)
.+..+.++.+.-+.+..|-+ .|..-. +|+.+...+....++.+++..+..+.++.. +|.+.-.... ..++|++-
T Consensus 42 ~~~~~i~alg~~~vi~~ggiDLSvg~~--~~l~a~~~~~~~~~g~~~~~ai~~all~g~l~Gl~ng~lv~--~~~i~~~I 117 (330)
T PRK15038 42 FICIGIVALPLTMVIVSGGIDISFGST--IGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLII--YTGVNPLV 117 (330)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhCCChHH
Confidence 34455566666677777776 554444 667777777776666677666665554443 3333333332 57999874
No 70
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=31.67 E-value=3.5e+02 Score=23.53 Aligned_cols=75 Identities=13% Similarity=-0.142 Sum_probs=41.2
Q ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHH
Q 031495 46 WRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSG 125 (158)
Q Consensus 46 ~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~i~~~~p~llv~~s~ 125 (158)
++++.++...+.....+ ++..++.-.+...+.|.||.+...+.+++.+... ..--+......|.++.=-++
T Consensus 5 ~~~~~~~~~~~~~pl~a-i~l~~~~~a~~~~~~G~~p~~~~~~lf~~~f~~~--------~~i~~~l~~~~pliltgL~~ 75 (356)
T COG4603 5 KRPKRSRLRSILSPLIA-ILLALIVGALLLLLLGYDPLAAYSALFVGAFGSP--------WSIGELLVKAAPLILTGLGV 75 (356)
T ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444 4444466667788999999943333333322211 11236666777777666666
Q ss_pred HHHH
Q 031495 126 FFVF 129 (158)
Q Consensus 126 i~~~ 129 (158)
..+|
T Consensus 76 ava~ 79 (356)
T COG4603 76 AVAF 79 (356)
T ss_pred HHHH
Confidence 6555
No 71
>PF07869 DUF1656: Protein of unknown function (DUF1656); InterPro: IPR012451 The proteins in this entry have no known function and belong to the AaeX family.
Probab=30.68 E-value=1.2e+02 Score=19.06 Aligned_cols=40 Identities=30% Similarity=0.558 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCcHHHHhh
Q 031495 116 FGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMA 157 (158)
Q Consensus 116 ~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~~P~~~~~~ 157 (158)
+|.+++. .+.+++..++-+++++|.|....-.-|++.+.+
T Consensus 10 ~P~ll~~--~~~A~~l~~~l~~ll~r~~~~r~vWhp~Lf~la 49 (58)
T PF07869_consen 10 FPPLLVY--ALLALLLTLLLRRLLARLGLYRFVWHPALFDLA 49 (58)
T ss_pred HhHHHHH--HHHHHHHHHHHHHHHHHhCcccccccHHHHHHH
Confidence 4555544 345678888999999999985456677777654
No 72
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=30.67 E-value=71 Score=25.93 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=24.6
Q ss_pred HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031495 98 FSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTR 141 (158)
Q Consensus 98 ~~~~G~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~R 141 (158)
+++.|.+ .+..++-..-.|..+ .+++.|.+....++|
T Consensus 178 l~~~G~~-v~~~~ia~~~IP~Ai------~a~ii~~~~~~~~Dr 214 (218)
T PF06149_consen 178 LKELGYE-VEPLHIALWAIPTAI------IAFIIHGIRLYLFDR 214 (218)
T ss_pred HHhcCcc-ccHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3445554 334567777777654 478888888888877
No 73
>COG3601 Predicted membrane protein [Function unknown]
Probab=30.66 E-value=2.7e+02 Score=22.04 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=34.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcchH---HHHHHHH-HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Q 031495 4 GVAAGRKTMVATAMLLLVLSGPVK---ALAYLLT-HGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGA 67 (158)
Q Consensus 4 g~k~~~~~~~va~lll~~l~Gp~~---al~~~l~-fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~ 67 (158)
|.++|+...++=.++.-++.||.. +.+.=+. -|..=...+..|+|++|.. ....|.++.++..
T Consensus 51 Gp~ag~~vllvk~iL~~l~~g~~~~~iG~~mNfiag~~fv~~~~~~~k~~ks~~-~~i~~~llgti~~ 117 (186)
T COG3601 51 GPGAGIFVLLVKNILLYLLSGPVGDPIGPPMNFIAGGSFVLIAALIYKKKKSTK-NLIVGLLLGTIAM 117 (186)
T ss_pred ccchHHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH
Confidence 778888888888888888776542 2222222 2222334566777777543 3334444444333
No 74
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.16 E-value=4.3e+02 Score=23.88 Aligned_cols=85 Identities=9% Similarity=0.147 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHcCCCC-cchHHHHHHHHHHHHHHHHHHH
Q 031495 50 VDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFI-FSAAGVNI-VPSMNVIYVIFGTLVLLNSGFF 127 (158)
Q Consensus 50 ~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~-~~~~G~~~-~~~~~~i~~~~p~llv~~s~i~ 127 (158)
+.|...+...+++..+|- +++.-..-.+|-. .+.+++..|+. .++.|.+. ++..+.++...-+.+.+.+++=
T Consensus 3 ~~~t~~L~~~~~~~~~gs-f~~Gy~~~~iNap-----~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~G 76 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGS-FQFGYNIGVVNAP-----QELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIG 76 (485)
T ss_pred CCccHHHHHHHHHHHHhc-hhhhhhheecCch-----HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555 6666555554444 56666777675 47899654 5668999999999999988888
Q ss_pred HHHHHHHHHHHHhhhCC
Q 031495 128 VFLLHLLYSVFLTRLGM 144 (158)
Q Consensus 128 ~~i~~~va~~vL~Rlg~ 144 (158)
++.. .++-+|.|.
T Consensus 77 s~~~----~~la~~~GR 89 (485)
T KOG0569|consen 77 SFSS----GLLADRFGR 89 (485)
T ss_pred HHHH----HHHHHhhcc
Confidence 7654 455566665
No 75
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=29.13 E-value=29 Score=24.82 Aligned_cols=10 Identities=50% Similarity=0.943 Sum_probs=8.4
Q ss_pred CCcHHHHhhC
Q 031495 149 RLPRWLEMAL 158 (158)
Q Consensus 149 ~~P~~~~~~~ 158 (158)
+|||||+|+.
T Consensus 110 ~~~~w~~~~~ 119 (119)
T TIGR02663 110 NPPPWLRKAL 119 (119)
T ss_pred CCCHHHHhhC
Confidence 7899999873
No 76
>PRK04032 hypothetical protein; Provisional
Probab=29.06 E-value=2.7e+02 Score=21.44 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031495 122 LNSGFFVFLLHLLYSVFLTRLGMKAS 147 (158)
Q Consensus 122 ~~s~i~~~i~~~va~~vL~Rlg~~~~ 147 (158)
+..++...++|+....++.|+|.+..
T Consensus 132 ~~~~~~~~~~~~~~n~~l~~l~lk~~ 157 (159)
T PRK04032 132 ILILVITPLLHLLTNIIAYKLGLKDV 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445667899999999999999744
No 77
>PRK01844 hypothetical protein; Provisional
Probab=28.83 E-value=1.6e+02 Score=19.75 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhcccH-HHHHHHHHHHHHHHHHHHcCCCCc
Q 031495 53 GLSIFLCTIARSAGAMGYILTSS----FLIRENI-LALITINIHASLTFIFSAAGVNIV 106 (158)
Q Consensus 53 ~~~~~~g~l~~l~~~~~~~~~s~----~l~g~N~-~~~~~~~~~~~l~~~~~~~G~~~~ 106 (158)
|..++.+.++.++|.++-+.++- .-+.+|| ++ ++.+..++.++|..++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpin------e~mir~Mm~QMGqkPS 56 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPIN------EQMLKMMMMQMGQKPS 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHhCCCcc
Confidence 33444555666666666666543 4456673 43 3455566778887553
No 78
>PRK09272 hypothetical protein; Provisional
Probab=27.85 E-value=2.3e+02 Score=20.36 Aligned_cols=45 Identities=11% Similarity=-0.068 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Q 031495 28 ALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYIL 72 (158)
Q Consensus 28 al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~ 72 (158)
.+.++.+-.++-+..-++.||+.+.+.++..|..+-..+....-.
T Consensus 62 ~fw~v~pTl~~fl~~~~ll~~~~~f~~sl~~~~~~~~~~~~~~~~ 106 (109)
T PRK09272 62 VFWGVPPTLPMFLIVPLLLKRGFGFWLSLLAGIGVTAVLFLLQAL 106 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 344555556677778888899899999998888877777665443
No 79
>PRK10711 hypothetical protein; Provisional
Probab=27.82 E-value=3.4e+02 Score=22.17 Aligned_cols=100 Identities=12% Similarity=-0.086 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhc----CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----HHHcCC
Q 031495 33 LTHGVLGFSMGSLWRLG----VDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFI-----FSAAGV 103 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~----~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~-----~~~~G~ 103 (158)
+..|..=++++.=.+|| |+.+..+..|..++...-++..+....++|.|.-. ..+..-+|...- .|++|-
T Consensus 64 ~lLgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~-~~Sl~pkSVTtPIAm~is~~iGG 142 (231)
T PRK10711 64 DLLQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEI-AASILPKSVTTPIAMAVGGSIGG 142 (231)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH-HHHHhhhhhhHHHHHHHHHHhCC
Confidence 33444445555555554 35566666777766666667778888899998643 444555555552 334442
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031495 104 NIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMK 145 (158)
Q Consensus 104 ~~~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~ 145 (158)
++.+.....++.+++ -..++.+++|+++.+
T Consensus 143 --------~~sLta~~ViitGi~----Ga~~g~~llk~~rI~ 172 (231)
T PRK10711 143 --------IPAISAVCVIFVGIL----GAVFGHTLLNAMRIR 172 (231)
T ss_pred --------cHHHHHHHHHHHHHH----HHHHHHHHHHHcCCC
Confidence 234444555555544 456778899998875
No 80
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.77 E-value=2.5e+02 Score=20.56 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHHH
Q 031495 27 KALAYLLTHGVLGFSMGSLWRLGVDW--GLSIFLCTIARSAGAMGYILT 73 (158)
Q Consensus 27 ~al~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~~ 73 (158)
|..-..+.|+-+++..+..+-|...+ ...++.|.+.-+.+.++++|+
T Consensus 12 R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwI 60 (114)
T PF11023_consen 12 RTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWI 60 (114)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445555555544433343333 223346666666666666665
No 81
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=27.67 E-value=2.5e+02 Score=20.64 Aligned_cols=8 Identities=0% Similarity=-0.180 Sum_probs=2.9
Q ss_pred cHHHHHHH
Q 031495 81 NILALITI 88 (158)
Q Consensus 81 N~~~~~~~ 88 (158)
||..+..|
T Consensus 136 ~Plt~~~~ 143 (152)
T TIGR01248 136 QPISPAIE 143 (152)
T ss_pred CCccHHHH
Confidence 33333333
No 82
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=27.42 E-value=3.7e+02 Score=22.52 Aligned_cols=37 Identities=5% Similarity=-0.093 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Q 031495 50 VDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALI 86 (158)
Q Consensus 50 ~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~ 86 (158)
.+|...+.+..++.+++.+..+.-......+||.+.+
T Consensus 372 ~~~~~~~~~~~~~~~~~lla~~~Pa~~a~~~~pv~aL 408 (411)
T TIGR02212 372 LDPLDVLLIIVTALLLSLLATLYPAWRAAKLQPAEAL 408 (411)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 3555555566666667777777777888899987643
No 83
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=27.16 E-value=4.2e+02 Score=23.10 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=7.0
Q ss_pred HHHHHHhhcC
Q 031495 41 SMGSLWRLGV 50 (158)
Q Consensus 41 ~lG~~~~~~~ 50 (158)
.+|.+|||-.
T Consensus 410 llgl~w~r~t 419 (471)
T TIGR02119 410 VLGLYWKRAN 419 (471)
T ss_pred HHHHhcCcCc
Confidence 6888886643
No 84
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=26.86 E-value=4.9e+02 Score=23.72 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhcCchH
Q 031495 33 LTHGVLGFSMGSLWRLGVDWG 53 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~~s~~ 53 (158)
-.|++.|+.+||..+||+.+.
T Consensus 148 aiY~~~~la~ay~~y~~~~p~ 168 (504)
T PRK03356 148 ATYSFLSVAFGYFFFVRKMDV 168 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 358899999999988888774
No 85
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=26.74 E-value=3.8e+02 Score=22.44 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhcCchHHHHHHHHHHHHHHH
Q 031495 28 ALAYLLTHGVLGFSMGSL---WRLGVDWGLSIFLCTIARSAGA 67 (158)
Q Consensus 28 al~~~l~fG~lGv~lG~~---~~~~~s~~~~~~~g~l~~l~~~ 67 (158)
...+.+..|+.+..+=+. .+++.++.+.++.|..+....-
T Consensus 102 ~~~~a~iGal~~~~lv~~l~~~~~~~~~~~liL~Gi~i~~~~~ 144 (311)
T PF01032_consen 102 LPLFAFIGALLALLLVYLLSKRRGGFSPLRLILAGIAISALFS 144 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCHT-TTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHH
Confidence 333444444444444443 4566788888888887655443
No 86
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=26.62 E-value=3.9e+02 Score=22.44 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCcch
Q 031495 35 HGVLGFSMGSLWRLGVDWGL--SIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPS 108 (158)
Q Consensus 35 fG~lGv~lG~~~~~~~s~~~--~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~~ 108 (158)
.-++|.-..|...|..++++ .+..-.+=+-.+.+++.-.-..++|.| +.+++.+..+|..+||.
T Consensus 82 ~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~iL~~~----------G~iN~~L~~lGl~~~p~ 147 (287)
T COG1176 82 CLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILGRN----------GLINQALLALGLIDEPL 147 (287)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------ChhhHHHHHcCCCCCcH
Confidence 33555556666666543333 333444445666777776666667666 66777777888875443
No 87
>PRK10408 putative L-valine exporter; Provisional
Probab=26.45 E-value=2.6e+02 Score=20.34 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 031495 13 VATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSA 65 (158)
Q Consensus 13 ~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~ 65 (158)
+|++-+--++=.|=+.+|....|- +++.+++|.+|-...=+.|++.+-+
T Consensus 56 LVVS~~P~v~~~~~k~~ptlvGf~----~l~~~fyktrsIi~aTL~gAl~YGl 104 (111)
T PRK10408 56 LVVSTAPEVMHDPRKLLPTLVGFL----VLGACFYKTRSIIIATLLGALAYGL 104 (111)
T ss_pred HHHhcChHHHhChHHHHHHHHHHH----HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 333333344445557666666664 4566788878777666667666543
No 88
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.98 E-value=7.6e+02 Score=25.62 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 031495 7 AGRKTMVATAMLLL 20 (158)
Q Consensus 7 ~~~~~~~va~lll~ 20 (158)
.|..|..++.++..
T Consensus 64 ~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 64 GGMPGAWLADTLFF 77 (1355)
T ss_pred cchHHHHHHHHHHH
Confidence 35566666666655
No 89
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=25.87 E-value=3.4e+02 Score=23.00 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 031495 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIF 57 (158)
Q Consensus 20 ~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~ 57 (158)
+...| ..-...+.....|..+|++|.+ ++|.++++
T Consensus 182 ~~~~~--~~~~~~~~~al~ga~LGFL~~N-~~PAkIFm 216 (319)
T COG0472 182 ALLQG--LGELALICAALAGACLGFLWFN-FYPAKIFM 216 (319)
T ss_pred HHHhc--chhHHHHHHHHHHHHHHHHHhc-CChhhhcC
Confidence 44444 3444566778999999999888 55566655
No 90
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.83 E-value=5.3e+02 Score=23.81 Aligned_cols=73 Identities=14% Similarity=-0.059 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHH---------HhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031495 10 KTMVATAMLLLV---------LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE 80 (158)
Q Consensus 10 ~~~~va~lll~~---------l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~ 80 (158)
+++++++++++- -+.|++++..-+.|...|..+-.-.=. .+|+..+ ...++..+++.+...+...++|.
T Consensus 244 lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~-~~~~~il-~~~~~~~~~K~~~~~~~~~~~g~ 321 (621)
T PRK03562 244 LGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLL-ENPLRIL-ILLLGFLAIKIAMLWLLARPLGV 321 (621)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 666777776652 234566677777777777655432111 2344443 33455778888888888899998
Q ss_pred cHHH
Q 031495 81 NILA 84 (158)
Q Consensus 81 N~~~ 84 (158)
+.-+
T Consensus 322 ~~~~ 325 (621)
T PRK03562 322 PRKQ 325 (621)
T ss_pred CHhH
Confidence 8654
No 91
>PRK15021 microcin C ABC transporter permease; Provisional
Probab=25.66 E-value=4.3e+02 Score=22.66 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=29.2
Q ss_pred HHHcCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCcHH
Q 031495 98 FSAAGVNIVPS--MNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRW 153 (158)
Q Consensus 98 ~~~~G~~~~~~--~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~~P~~ 153 (158)
.+..|.+...- -+.++.++|.++....+ .+..-++....|.=||.-.-|+.|.|
T Consensus 238 Ara~G~s~~~Ii~rHILPn~l~pilt~~~~--~~~gaIl~e~~LsFLGfG~~~~~psw 293 (341)
T PRK15021 238 AQALGVSDRSIILRHMLPNAMVATLTFLPF--ILCSSITTLTSLDFLGFGLPLGSPSL 293 (341)
T ss_pred HHHcCcChhHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccCCCCCCCCCH
Confidence 44577664222 25666666666555554 33444555667777777312344544
No 92
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=25.35 E-value=4.3e+02 Score=22.54 Aligned_cols=47 Identities=9% Similarity=-0.183 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhh-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031495 34 THGVLGFSMGSLWRL-----GVDWGLSIFLCTIARSAGAMGYILTSSFLIRE 80 (158)
Q Consensus 34 ~fG~lGv~lG~~~~~-----~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~ 80 (158)
..|..+...+|+.+| +.+.......+.+...++..+.....+..++.
T Consensus 112 ~ma~~~~~v~y~iyr~~~~~~~~~~~~~~~~f~gg~l~i~~~al~~al~l~~ 163 (322)
T PRK07331 112 NMAFIMPFVGYYIYKFIKKWTKSKKGEYIGAFIGGYIGINVAALFAAIEFGL 163 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555665443 22334456667677777777777777777765
No 93
>PRK00523 hypothetical protein; Provisional
Probab=25.34 E-value=2e+02 Score=19.34 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHHHHHHHcCCCCc
Q 031495 56 IFLCTIARSAGAMGYILTSS----FLIRENILALITINIHASLTFIFSAAGVNIV 106 (158)
Q Consensus 56 ~~~g~l~~l~~~~~~~~~s~----~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~ 106 (158)
+..+.++.++|.+.-+.++- .-+.+||= .=++.+..++.++|..++
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~k~l~~NPp-----ine~mir~M~~QMGqKPS 57 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFKKQIRENPP-----ITENMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC-----CCHHHHHHHHHHhCCCcc
Confidence 33445555555555555543 34455652 123455566778887553
No 94
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.33 E-value=1.7e+02 Score=18.47 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHH
Q 031495 37 VLGFSMGSLWRLGVDWGLSIFLCTIAR 63 (158)
Q Consensus 37 ~lGv~lG~~~~~~~s~~~~~~~g~l~~ 63 (158)
.+|..+|....+..+.+..+..|.+..
T Consensus 38 ~~G~~~G~~~~~~~~~~~~~igg~iLi 64 (67)
T PF02659_consen 38 LLGLLLGRRLGRFIGSYAEWIGGIILI 64 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677776666666665555555543
No 95
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=24.95 E-value=1.2e+02 Score=25.39 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHH---HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCC
Q 031495 29 LAYLLTHGVLGFSMGSLWRLGVDWGLSI---FLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNI 105 (158)
Q Consensus 29 l~~~l~fG~lGv~lG~~~~~~~s~~~~~---~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~ 105 (158)
+|+++|+...|+.+=..+.++-.-.... ..-..=...|.++.+...+.=+=++..+...++++..+|+..+.+|.++
T Consensus 101 lP~alP~~VaGiaLl~l~~~~g~~g~~~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~ 180 (274)
T COG0555 101 LPFALPTAVAGIALLLLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASP 180 (274)
T ss_pred CcccCchHHHHHHHHHHhcCCCcchhhhcccCceEeccHHHHHHHHHHHcchhHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 4555566666666655555432111111 0001111234444445555555566666777777788888888999876
Q ss_pred cchH--HHHHHHHHHHHHHHHHHHHH
Q 031495 106 VPSM--NVIYVIFGTLVLLNSGFFVF 129 (158)
Q Consensus 106 ~~~~--~~i~~~~p~llv~~s~i~~~ 129 (158)
-+.. =.++...|+++ .+.+.+|
T Consensus 181 ~~tf~~V~lP~l~pall--~G~~Lsf 204 (274)
T COG0555 181 LQTFRRVILPLLLPALL--AGFILSF 204 (274)
T ss_pred ceeeeeeehhhchHHHH--HHHHHHH
Confidence 4543 23355555543 4444444
No 96
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=24.92 E-value=3e+02 Score=20.53 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHH
Q 031495 29 LAYLLTHGVLGFSMGSLWRLG-----VDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFI---FSA 100 (158)
Q Consensus 29 l~~~l~fG~lGv~lG~~~~~~-----~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~---~~~ 100 (158)
-.......++|..+|.-++++ ++.+......++..+...+......++++|.|..+-.....=.-++++ .+.
T Consensus 47 ~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La~~PGGl~~m~~~A~~ 126 (156)
T TIGR03082 47 WLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLATSPGGASEMAALAAE 126 (156)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCchHHHHHHHHHH
Confidence 344567789999999877763 344444445555555555666777899999999888777777777775 356
Q ss_pred cCCC
Q 031495 101 AGVN 104 (158)
Q Consensus 101 ~G~~ 104 (158)
+|.|
T Consensus 127 ~gad 130 (156)
T TIGR03082 127 LGAD 130 (156)
T ss_pred hCCC
Confidence 7765
No 97
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=24.16 E-value=4.2e+02 Score=22.07 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=31.5
Q ss_pred HHHcCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCcHH
Q 031495 98 FSAAGVNIVPS--MNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRW 153 (158)
Q Consensus 98 ~~~~G~~~~~~--~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~~P~~ 153 (158)
.+..|.+...- -+.++.+.|.+++..+...... ++....|.=+|.-..|+-|.|
T Consensus 199 Ar~~G~s~~~Ii~rhilPn~~~~il~~~~~~i~~~--il~ea~lsflGlG~~~~~~~w 254 (302)
T PRK15406 199 AQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSM--ILFESFLSFLGLGTQEPLSSW 254 (302)
T ss_pred HHHcCcChhhhhHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCCCCCCCH
Confidence 34577664322 3677888888776666655544 555667777776322333443
No 98
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=24.08 E-value=2.1e+02 Score=23.89 Aligned_cols=35 Identities=23% Similarity=-0.024 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 031495 30 AYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSA 65 (158)
Q Consensus 30 ~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~ 65 (158)
|-.+|.++..... |+.|||+|+...+..-.+++.+
T Consensus 230 P~llPl~~~~~~y-~llkKk~~~~~li~~~iv~~iv 264 (271)
T TIGR00828 230 PGLLPLGLTLLMY-WLLRKKVNPVLLIGGTFVLGIV 264 (271)
T ss_pred hhhHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHH
Confidence 4555665555544 4457777787776655555444
No 99
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=23.97 E-value=2.5e+02 Score=22.58 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.1
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 031495 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARS 64 (158)
Q Consensus 20 ~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l 64 (158)
+++.|..+.. .+..+..|+.+|+.++|.+|-+..+..=++...
T Consensus 165 SllFal~H~~--~~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~ 207 (222)
T TIGR03008 165 TLLFGLEHHL--IVAGLIAGLAYNLLLLRTGSIMACILAHAVTNG 207 (222)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 4444545442 334567799999999999998888776555433
No 100
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=23.82 E-value=1.7e+02 Score=21.06 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031495 88 INIHASLTFIFSAAGVNI-------------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMK 145 (158)
Q Consensus 88 ~~~~~~l~~~~~~~G~~~-------------~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~ 145 (158)
++.++.++++++.+..+. .+.++++|.++|...=+. ..+.+|.|.+
T Consensus 5 e~ak~~l~eil~a~~~peN~~kl~eAk~~agndm~k~mq~v~Pva~qiq------------~~VIk~yGF~ 63 (105)
T PF14974_consen 5 EQAKAILTEILDAFNQPENAAKLEEAKANAGNDMLKMMQFVFPVATQIQ------------MEVIKKYGFP 63 (105)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHhccchHHHHHHHHHHHHHHHH------------HHHHHHcCCC
Confidence 445555555555444433 456899999999865433 4566666663
No 101
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=23.26 E-value=4e+02 Score=21.48 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHH---HHHHHHHHHH--hhcCchHHHHHHHHHHHHHHHHHHHHH
Q 031495 24 GPVKALAYLLTHG---VLGFSMGSLW--RLGVDWGLSIFLCTIARSAGAMGYILT 73 (158)
Q Consensus 24 Gp~~al~~~l~fG---~lGv~lG~~~--~~~~s~~~~~~~g~l~~l~~~~~~~~~ 73 (158)
...++..+.+.|+ ++|..+|+.. ..+..+......-......|.++++.+
T Consensus 228 ~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~ 282 (317)
T PF02535_consen 228 SKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAF 282 (317)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554 5677777777 111222333333344445555554443
No 102
>COG4392 Predicted membrane protein [Function unknown]
Probab=23.06 E-value=2.6e+02 Score=20.16 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=7.4
Q ss_pred CCcHHHHhh
Q 031495 149 RLPRWLEMA 157 (158)
Q Consensus 149 ~~P~~~~~~ 157 (158)
++|+|++++
T Consensus 32 ~LP~~v~~~ 40 (107)
T COG4392 32 RLPPWVRRF 40 (107)
T ss_pred cCCHHHHHH
Confidence 788999875
No 103
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=22.95 E-value=5.8e+02 Score=23.59 Aligned_cols=36 Identities=8% Similarity=-0.152 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q 031495 50 VDWGLSIFLCTIARSAGAMGYILTSSFLIRENILAL 85 (158)
Q Consensus 50 ~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~ 85 (158)
.+|+..+.+-.+...+|.++-+.=+..--..||++.
T Consensus 609 ~~~~~~~~a~~~s~~vGl~~GlyPA~rAa~l~PieA 644 (648)
T PRK10535 609 FSPLALLSAFLCSTVTGILFGWLPARNAARLDPVDA 644 (648)
T ss_pred eCHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHH
Confidence 366677766667777777777777777888888864
No 104
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=2.8e+02 Score=21.88 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH------HHHHHHhcccHHH
Q 031495 34 THGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYI------LTSSFLIRENILA 84 (158)
Q Consensus 34 ~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~------~~s~~l~g~N~~~ 84 (158)
.-|+.-++.+.-.|++.+|+..+..|.+...+|..+.. +...++.|++..-
T Consensus 113 ~~GI~ri~~~~~~~~~~G~~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~ 169 (185)
T COG3247 113 ASGILRIVVAFRLRSLPGWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIF 169 (185)
T ss_pred HHHHHHHHHHHHccccCCcHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHH
Confidence 34566677788888888999999999988888876543 3444555555443
No 105
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=22.76 E-value=1.3e+02 Score=22.32 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCC
Q 031495 124 SGFFVFLLHLLYSVFLTRLGM 144 (158)
Q Consensus 124 s~i~~~i~~~va~~vL~Rlg~ 144 (158)
+++.+.....+..+++||+|.
T Consensus 24 ~L~lVl~lI~~~aWLlkR~~~ 44 (124)
T PRK11486 24 ALIGIIALILAAAWLVKRLGF 44 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 334444555566799999986
No 106
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=22.53 E-value=3.5e+02 Score=20.47 Aligned_cols=69 Identities=14% Similarity=0.014 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---chHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 031495 27 KALAYLLTHGVLGFSMGSLWRLGV---DWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTF 96 (158)
Q Consensus 27 ~al~~~l~fG~lGv~lG~~~~~~~---s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~ 96 (158)
+.+-+.+-....|+.-|.-+-+.. .+...+..++++.++..++.+++..++++.|+.. ..-.+..+..+
T Consensus 56 ~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~G~~aGa~T~ 127 (154)
T TIGR01625 56 REFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYAL-TAGMLAGATTN 127 (154)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHhccccC
Confidence 445556666678888887554333 3346677888888888888889999999999864 33344444444
No 107
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.44 E-value=1.7e+02 Score=19.45 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 031495 33 LTHGVLGFSMGSLWRLG 49 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~ 49 (158)
..++++|...||....-
T Consensus 18 ~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 18 IISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567777778765553
No 108
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=22.34 E-value=2.4e+02 Score=23.65 Aligned_cols=37 Identities=22% Similarity=-0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Q 031495 30 AYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGA 67 (158)
Q Consensus 30 ~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~ 67 (158)
|-.+|.++..... |+.|||+|+...+..-.+++.++-
T Consensus 240 P~lLPl~~~~~~y-~llkKk~~~~~li~~~~v~~ii~~ 276 (282)
T PRK11103 240 PGLVPLLLTFACM-WLLRKKVNALWIIVGFFVIGIAGY 276 (282)
T ss_pred hhhHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHH
Confidence 4455555444444 445777778777665555554443
No 109
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=21.86 E-value=4.9e+02 Score=21.97 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q 031495 50 VDWGLSIFLCTIARSAGAMGYILTSSFLIRENILAL 85 (158)
Q Consensus 50 ~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~ 85 (158)
.+|...+....+..+++.+..+.-+....+.||.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~Pa~~a~~~~p~~a 395 (399)
T PRK10814 360 IEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEA 395 (399)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 466666767777777888888888888889998864
No 110
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=21.72 E-value=2.8e+02 Score=24.20 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Q 031495 34 THGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSA 100 (158)
Q Consensus 34 ~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~ 100 (158)
..|..|+.+-....+..+|...=..|++.-.+-.+..+.=.++-.+.|+.+......++++++.+.+
T Consensus 218 tlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~~~~~l~~cl~~ 284 (354)
T KOG1484|consen 218 TLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPHLENSLKQCLRQ 284 (354)
T ss_pred HhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHH
Confidence 3466789999988887888777777777777777788888889999999988777888888886554
No 111
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=21.40 E-value=1.3e+02 Score=23.50 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=27.6
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhcCchHH
Q 031495 22 LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGL 54 (158)
Q Consensus 22 l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~ 54 (158)
+.-|.....++++++.....+|+.||+++....
T Consensus 4 liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~ 36 (175)
T PF13301_consen 4 LIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQEN 36 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 345777888889999999999999999886655
No 112
>PF09819 ABC_cobalt: ABC-type cobalt transport system, permease component; InterPro: IPR017195 This group represents a predicted ABC-type thiamin-related transport system, permease component 1. It is probably part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. It could also transport other HMP-containing products. The complex is composed of two ATP-binding proteins (ykoD), two transmembrane proteins (ykoC and ykoE) and a solute-binding protein (ykoF).
Probab=21.11 E-value=3.5e+02 Score=19.95 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHH--HHH--HHhhcCchHHHHHHHHHHHHHHHH
Q 031495 7 AGRKTMVATAMLLLVLSGPVKALAYLLTHGV-LGFS--MGS--LWRLGVDWGLSIFLCTIARSAGAM 68 (158)
Q Consensus 7 ~~~~~~~va~lll~~l~Gp~~al~~~l~fG~-lGv~--lG~--~~~~~~s~~~~~~~g~l~~l~~~~ 68 (158)
+|..+-++++++ ..++|+.-+.. ++..|+ =|+. ++. .=+|+++|...+..|......+++
T Consensus 63 aa~~~e~laa~v-e~~~G~~~G~~-~ii~gl~QGlg~El~Fa~~~Yr~~~~~~~~lag~~~~i~~~~ 127 (129)
T PF09819_consen 63 AALLAELLAALV-EMLLGSQWGIM-TIISGLVQGLGAELGFALFRYRRWNWPVLMLAGALAAIASFI 127 (129)
T ss_pred HHHHHHHHHHHH-HHHhcCcchHH-HHHHHHHhHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Confidence 455655566655 44456655554 444443 3333 222 235667888888888887776653
No 113
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.01 E-value=2.3e+02 Score=21.36 Aligned_cols=8 Identities=25% Similarity=0.272 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 031495 39 GFSMGSLW 46 (158)
Q Consensus 39 Gv~lG~~~ 46 (158)
|..+|+.+
T Consensus 92 ga~l~~~~ 99 (154)
T PRK10862 92 GAALFQLL 99 (154)
T ss_pred HHHHHHHH
Confidence 44445444
No 114
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.91 E-value=2.1e+02 Score=17.45 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhcC--chHHHHHHHHHHHHHHHHH
Q 031495 34 THGVLGFSMGSLWRLGV--DWGLSIFLCTIARSAGAMG 69 (158)
Q Consensus 34 ~fG~lGv~lG~~~~~~~--s~~~~~~~g~l~~l~~~~~ 69 (158)
..|..-+..+.- +|+. +|+..+..|.+...+|.++
T Consensus 34 ~~Gi~~l~~~~~-~~~~~~~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 34 ISGIFQLISAFR-RRKGSKGWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHH
Confidence 334444444443 3333 6677777777777776654
No 115
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=20.66 E-value=2.6e+02 Score=21.62 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcCch---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031495 33 LTHGVLGFSMGSLWRLGVDW---GLSIFLCTIARSAGAMGYILTSSFLIR 79 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~~s~---~~~~~~g~l~~l~~~~~~~~~s~~l~g 79 (158)
+.+-+.|.++|..+.++.+. ...+..+.....+..+.+-.+..++.+
T Consensus 172 ~~~~l~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~sL~iY~~h 221 (223)
T PF07786_consen 172 LGFFLLGMALGRLFLRKGRRRFRVRALAKGGLIRPLAFLGRHSLLIYLIH 221 (223)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHhc
Confidence 45678999999988887333 233445555666666666666665554
No 116
>COG3859 Predicted membrane protein [Function unknown]
Probab=20.64 E-value=4.3e+02 Score=20.84 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=21.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcc------hHHH-HHHHHHHHHHHH
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGP------VKAL-AYLLTHGVLGFS 41 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp------~~al-~~~l~fG~lGv~ 41 (158)
|+|+|+|..+-+..++ +-++.|+ .+.+ =|.++|-.+|+.
T Consensus 50 RrG~kaG~~tGLl~Gl-l~~i~G~~Y~lhpsQ~~ldYilaf~~iG~a 95 (185)
T COG3859 50 RRGLKAGLLTGLLWGL-LHLILGKAYILHPSQVLLDYILAFMAIGFA 95 (185)
T ss_pred HhhhHHHHHHHHHHHH-HHHHhCchhhccHHHHHHHhhHHHHHHHHH
Confidence 8899888665444443 4555664 3332 244555555543
No 117
>PRK10913 dipeptide transporter; Provisional
Probab=20.03 E-value=5.1e+02 Score=21.44 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHcCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCcHH
Q 031495 98 FSAAGVNIVPS--MNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRW 153 (158)
Q Consensus 98 ~~~~G~~~~~~--~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~~P~~ 153 (158)
.+.+|.+...- -..++.+.|.++.....-.... ++..-.|.=+|.-..|+-|.|
T Consensus 196 Ara~G~s~~~Ii~rhilPn~~~~ii~~~~~~~~~~--i~~ea~lsflGlG~~~~~~~w 251 (300)
T PRK10913 196 SRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNA--ILDMAALGFLGMGAQPPTPEW 251 (300)
T ss_pred HHHcCCChHHhHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHccCCCCCCCCCH
Confidence 44588764332 3566777777766655554443 455556666665312344444
No 118
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=2.4e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHH
Q 031495 33 LTHGVLGFSMGSLWRLGVDWGLSI 56 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~~s~~~~~ 56 (158)
..+|+.|...|+ |..+.|+...+
T Consensus 33 ti~aiVg~i~Gf-~~Qqls~tvy~ 55 (101)
T KOG4112|consen 33 TIGAIVGFIYGF-AQQQLSVTVYI 55 (101)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456789999998 55556664443
Done!