Query 031495
Match_columns 158
No_of_seqs 101 out of 141
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 00:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlb_A THIT; S-component, ECF 97.3 0.00035 1.2E-08 54.2 6.1 76 2-79 60-144 (192)
2 3p5n_A RIBU, riboflavin uptake 96.7 0.035 1.2E-06 42.3 12.1 56 2-57 57-114 (189)
3 4dve_A Biotin transporter BIOY 73.2 24 0.00081 26.9 8.7 28 21-50 94-121 (198)
4 3tij_A NUPC family protein; me 64.6 44 0.0015 28.5 9.3 82 41-129 21-121 (424)
5 2ks1_B Epidermal growth factor 19.8 1E+02 0.0036 17.7 2.9 15 37-51 26-40 (44)
6 1iij_A ERBB-2 receptor protein 17.8 38 0.0013 18.8 0.6 14 37-50 22-35 (35)
7 2l2t_A Receptor tyrosine-prote 17.7 1.2E+02 0.004 17.5 2.8 15 37-51 25-39 (44)
8 2nwl_A GLTPH, glutamate sympor 17.5 4E+02 0.014 22.2 7.3 67 29-95 201-271 (422)
9 2zy9_A Mg2+ transporter MGTE; 17.1 4.5E+02 0.015 21.9 7.9 21 58-78 450-470 (473)
10 2jwa_A Receptor tyrosine-prote 17.0 1E+02 0.0035 17.8 2.5 15 36-50 25-39 (44)
No 1
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=97.34 E-value=0.00035 Score=54.24 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=49.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcc------hH-HHHHHHHHHHHHHHHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHH
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSGP------VK-ALAYLLTHGVLGFSMGSLWRLGVDW--GLSIFLCTIARSAGAMGYIL 72 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~Gp------~~-al~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~ 72 (158)
|+|.|+|....++.++ +.++.|+ ++ -+.|.+.|+.+|++ |+.++|+++. ...+.+..+.....+++.+.
T Consensus 60 ~~Gp~~G~~~g~i~gl-l~~i~g~~~~~~p~q~lldy~laf~~~Gla-G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~i 137 (192)
T 3rlb_A 60 RRGLTAGLVGGLIWGI-LSMITGHAYILSLSQAFLEYLVAPVSLGIA-GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFI 137 (192)
T ss_dssp HHCHHHHHHHHHHHHH-HHHHTTCSCCSSHHHHHHHHTHHHHHGGGG-GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHChHHHHHHHHHHHH-HHHHhCCccccchHHHHHHHHHHHHHHHHH-HhheeccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999776555444 4566653 22 25678899999999 9988887654 44444444444555555555
Q ss_pred HHHHHhc
Q 031495 73 TSSFLIR 79 (158)
Q Consensus 73 ~s~~l~g 79 (158)
....+++
T Consensus 138 sgvvff~ 144 (192)
T 3rlb_A 138 AGIIFWS 144 (192)
T ss_dssp HHHHHCG
T ss_pred HHHHHHH
Confidence 5455553
No 2
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=96.69 E-value=0.035 Score=42.30 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=40.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 031495 2 RWGVAAGRKTMVATAMLLLVLSG--PVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIF 57 (158)
Q Consensus 2 R~g~k~~~~~~~va~lll~~l~G--p~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~ 57 (158)
..|.+.|.....+.+++-.++.| |+..+.-.+..+..|+.-|+.|||++++...+.
T Consensus 57 ~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y~k~~~~~~~~~ 114 (189)
T 3p5n_A 57 TFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLIT 114 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHSSSCSHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46889997776666666666543 666555566777888888999998887766543
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=73.23 E-value=24 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhhcC
Q 031495 21 VLSGPVKALAYLLTHGVLGFSMGSLWRLGV 50 (158)
Q Consensus 21 ~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~ 50 (158)
.+.||..+ |.+.|-+.....|+..+|.+
T Consensus 94 ~l~gPTgG--YLiGF~~aA~v~G~l~~~~~ 121 (198)
T 4dve_A 94 SFLGPSGG--YRIAWLFTPFLIGFFLKKLK 121 (198)
T ss_dssp GGGSTTHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcchhH--HHHHHHHHHHHHHHHHHHcc
Confidence 45677777 77788888899999887754
No 4
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=64.60 E-value=44 Score=28.55 Aligned_cols=82 Identities=7% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH----HHHHHHHHH----HcCCCCcch--
Q 031495 41 SMGSLWRLGVDW--GLSIFLCTIARSAGAMGYILTSSFLIRENILALITINI----HASLTFIFS----AAGVNIVPS-- 108 (158)
Q Consensus 41 ~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~----~~~l~~~~~----~~G~~~~~~-- 108 (158)
.++|+.+++++. |+++..| ..+++.+...+++.++-....+.+ ++.+|..-+ .+|-..+++
T Consensus 21 ~ia~l~S~nrk~I~wr~V~~g-------l~lQ~~la~~vL~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvFG~l~~~~~~ 93 (424)
T 3tij_A 21 GIAVLLSSNRKAINLRTVGGA-------FAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGTSFLFGGLVSGKMF 93 (424)
T ss_dssp HHHHHHCSCGGGCCHHHHHHH-------HHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSTHHH
T ss_pred HHHHHHhCCcccCChHHHHHH-------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhChhhcCCcccCcccc
Confidence 456666555433 6666544 456777777777666555544444 444444322 244211211
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Q 031495 109 -------MNVIYVIFGTLVLLNSGFFVF 129 (158)
Q Consensus 109 -------~~~i~~~~p~llv~~s~i~~~ 129 (158)
.-..--++|.++++++++..+
T Consensus 94 ~~f~~~~~~Faf~vLp~IiFfsalisiL 121 (424)
T 3tij_A 94 EVFGGGGFIFAFRVLPTLIFFSALISVL 121 (424)
T ss_dssp HHHGGGGCCHHHHTHHHHHHHHHHHHHH
T ss_pred cccccccceeHHHHhHHHHHHHHHHHHH
Confidence 224456788888888877553
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.77 E-value=1e+02 Score=17.70 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhcCc
Q 031495 37 VLGFSMGSLWRLGVD 51 (158)
Q Consensus 37 ~lGv~lG~~~~~~~s 51 (158)
++++...++|||++.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 455666778888754
No 6
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=17.78 E-value=38 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhcC
Q 031495 37 VLGFSMGSLWRLGV 50 (158)
Q Consensus 37 ~lGv~lG~~~~~~~ 50 (158)
++|+..|.++||++
T Consensus 22 ii~l~~~~~iRRr~ 35 (35)
T 1iij_A 22 ILVVVVGILIKRRR 35 (35)
T ss_dssp HHTTTTTHHHHHCC
T ss_pred HHHHHhheEEeecC
Confidence 55667777888864
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=17.70 E-value=1.2e+02 Score=17.52 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhcCc
Q 031495 37 VLGFSMGSLWRLGVD 51 (158)
Q Consensus 37 ~lGv~lG~~~~~~~s 51 (158)
++++...++|||++.
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 455666777887753
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=17.51 E-value=4e+02 Score=22.18 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHH---HHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 031495 29 LAYLLTHGVLGFSMGSLWRLGVDWGLS---IFLCTIAR-SAGAMGYILTSSFLIRENILALITINIHASLT 95 (158)
Q Consensus 29 l~~~l~fG~lGv~lG~~~~~~~s~~~~---~~~g~l~~-l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~ 95 (158)
+....|+|..|+.-....+.+.+-... +....... .+=.++.|-+..++.+.||++......++.+-
T Consensus 201 im~laPigvf~lia~~~~~~g~~~l~~l~~~i~~~~~~~~i~~~vv~~~~~~~~~~np~~~~k~~~~a~~~ 271 (422)
T 2nwl_A 201 VMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLT 271 (422)
T ss_dssp HTTSHHHHHHHHHHHHHTTTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334567888887777666554332222 22222222 12122333333448899999866665555443
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=17.05 E-value=4.5e+02 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031495 58 LCTIARSAGAMGYILTSSFLI 78 (158)
Q Consensus 58 ~g~l~~l~~~~~~~~~s~~l~ 78 (158)
..++.-..|+++++.+..+++
T Consensus 450 itt~~D~~g~~~~~~~a~~~l 470 (473)
T 2zy9_A 450 VATLSDVTGLLIYLSVARLLL 470 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.95 E-value=1e+02 Score=17.80 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhcC
Q 031495 36 GVLGFSMGSLWRLGV 50 (158)
Q Consensus 36 G~lGv~lG~~~~~~~ 50 (158)
-++|+..+.++||++
T Consensus 25 vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhheehhh
Confidence 366777888888875
Done!