Query 031495
Match_columns 158
No_of_seqs 101 out of 141
Neff 6.7
Searched_HMMs 13730
Date Tue Mar 26 00:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031495.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031495hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 32.0 19 0.0013 18.3 2.5 16 32-47 10-26 (34)
2 d1dlca3 f.1.3.1 (A:61-289) del 30.7 9.8 0.00072 27.5 1.7 17 80-96 43-59 (229)
3 d1p90a_ c.55.5.2 (A:) NafY cor 23.3 14 0.001 23.6 1.3 11 148-158 113-123 (123)
4 d1a6qa1 a.159.1.1 (A:297-368) 18.0 13 0.00094 22.5 0.1 14 139-152 38-51 (72)
5 d1sr9a1 a.5.7.1 (A:437-491) 2- 13.4 68 0.0049 17.8 2.6 19 134-156 1-19 (55)
6 d1ttea1 a.5.2.1 (A:161-215) Ub 13.0 40 0.0029 19.1 1.4 10 138-147 29-38 (55)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 12.1 2.3E+02 0.017 21.1 6.4 63 33-95 194-260 (405)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.7 1.5E+02 0.011 18.1 4.0 25 106-130 74-98 (107)
9 d1u6ea2 c.95.1.2 (A:175-317) K 8.0 2.3E+02 0.017 18.0 4.3 25 81-105 41-65 (148)
10 d1hnja2 c.95.1.2 (A:175-317) K 8.0 2.5E+02 0.019 17.6 4.5 25 81-105 37-61 (143)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.95 E-value=19 Score=18.29 Aligned_cols=16 Identities=44% Similarity=0.889 Sum_probs=12.0
Q ss_pred HHHHH-HHHHHHHHHHh
Q 031495 32 LLTHG-VLGFSMGSLWR 47 (158)
Q Consensus 32 ~l~fG-~lGv~lG~~~~ 47 (158)
++.|| ..|+++|.+|-
T Consensus 10 lltfgt~tg~alg~lyp 26 (34)
T d2e74d2 10 LLAFGTVTGVALGALYP 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHhhhhh
Confidence 55677 77899998763
No 2
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=30.74 E-value=9.8 Score=27.50 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=13.4
Q ss_pred ccHHHHHHHHHHHHHHH
Q 031495 80 ENILALITINIHASLTF 96 (158)
Q Consensus 80 ~N~~~~~~~~~~~~l~~ 96 (158)
.|+|+++++++++.+|+
T Consensus 43 ~~~w~~~~~~ve~lId~ 59 (229)
T d1dlca3 43 EDPWKAFMEQVEALMDQ 59 (229)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 46788888888888876
No 3
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=23.33 E-value=14 Score=23.64 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=8.6
Q ss_pred CCCcHHHHhhC
Q 031495 148 LRLPRWLEMAL 158 (158)
Q Consensus 148 p~~P~~~~~~~ 158 (158)
.++|||+.++.
T Consensus 113 ~~~p~~l~k~~ 123 (123)
T d1p90a_ 113 GSPPPWLAKLV 123 (123)
T ss_dssp SCCCHHHHHHC
T ss_pred CCCChHHhhcC
Confidence 36899998864
No 4
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.04 E-value=13 Score=22.46 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=8.4
Q ss_pred HhhhCCCCCCCCcH
Q 031495 139 LTRLGMKASLRLPR 152 (158)
Q Consensus 139 L~Rlg~~~~p~~P~ 152 (158)
++.|...++|++||
T Consensus 38 m~~L~~e~Ip~LPP 51 (72)
T d1a6qa1 38 MRTLASENIPSLPP 51 (72)
T ss_dssp HHHHHHTTCSSCCT
T ss_pred HHHHHhcCCCCCCC
Confidence 34444345888887
No 5
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.40 E-value=68 Score=17.84 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=13.5
Q ss_pred HHHHHHhhhCCCCCCCCcHHHHh
Q 031495 134 LYSVFLTRLGMKASLRLPRWLEM 156 (158)
Q Consensus 134 va~~vL~Rlg~~~~p~~P~~~~~ 156 (158)
||+.+=+..|. ++|+|+|.
T Consensus 1 VAyiLe~~~Gi----~LPr~mq~ 19 (55)
T d1sr9a1 1 VAYIMKTDHGL----SLPRRLQI 19 (55)
T ss_dssp HHHHHHHHHCC----CCCHHHHH
T ss_pred CeEEeecccCC----CCCHHHHH
Confidence 46666677777 47888875
No 6
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.04 E-value=40 Score=19.09 Aligned_cols=10 Identities=50% Similarity=0.767 Sum_probs=7.5
Q ss_pred HHhhhCCCCC
Q 031495 138 FLTRLGMKAS 147 (158)
Q Consensus 138 vL~Rlg~~~~ 147 (158)
+|||+|+++.
T Consensus 29 VLrrlgik~~ 38 (55)
T d1ttea1 29 VLRRLGVKSL 38 (55)
T ss_dssp HHHHSCCSSC
T ss_pred HHHHhCcCCC
Confidence 6899998743
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.13 E-value=2.3e+02 Score=21.10 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHH----HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 031495 33 LTHGVLGFSMGSLWRLGVDWGLSIF----LCTIARSAGAMGYILTSSFLIRENILALITINIHASLT 95 (158)
Q Consensus 33 l~fG~lGv~lG~~~~~~~s~~~~~~----~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~ 95 (158)
.|+|..++.-...-+.+.+-...+. ...+...+-.++.+.+...+.+.||++...+..+..+.
T Consensus 194 aPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~ 260 (405)
T d2nwwa1 194 APIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLT 260 (405)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhhccchhhe
Confidence 4566666555544444433322222 11222222234455566668899999987666655443
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.69 E-value=1.5e+02 Score=18.07 Aligned_cols=25 Identities=24% Similarity=0.471 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 031495 106 VPSMNVIYVIFGTLVLLNSGFFVFL 130 (158)
Q Consensus 106 ~~~~~~i~~~~p~llv~~s~i~~~i 130 (158)
.+.+|.+++++|+++++.=.+.++-
T Consensus 74 n~~lEi~WTviP~lIL~~laipSl~ 98 (107)
T d3ehbb2 74 NTPIEVIWTLVPVLILVAIGAFSLP 98 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999888877666653
No 9
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.02 E-value=2.3e+02 Score=17.98 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCC
Q 031495 81 NILALITINIHASLTFIFSAAGVNI 105 (158)
Q Consensus 81 N~~~~~~~~~~~~l~~~~~~~G~~~ 105 (158)
..++...+.+.+.+++++++.|.+.
T Consensus 41 ~Vf~~a~~~v~~~i~~~L~~~gl~~ 65 (148)
T d1u6ea2 41 AVFRWAAFKMGDVGRRAMDAAGVRP 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4566677888888888888878764
No 10
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}
Probab=7.98 E-value=2.5e+02 Score=17.56 Aligned_cols=25 Identities=4% Similarity=0.146 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCC
Q 031495 81 NILALITINIHASLTFIFSAAGVNI 105 (158)
Q Consensus 81 N~~~~~~~~~~~~l~~~~~~~G~~~ 105 (158)
..++...+.+.+.++++++..|.+.
T Consensus 37 ~vf~~av~~~~~~i~~~L~~~g~~~ 61 (143)
T d1hnja2 37 EVFKVAVTELAHIVDETLAANNLDR 61 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhhhhhhhhhHHHHHHHHHhhhcc
Confidence 3455566778888888888888764
Done!