BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031497
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39261|ZFP2_ARATH Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1
Length = 150
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 103/164 (62%), Gaps = 20/164 (12%)
Query: 1 MDYQPNTSLHLSLPS---NQLNLDLVLEPSPSSNCSSPSPHSPAA--EPRIFSCNYCQRK 55
MDYQPNTSL LSLPS +QLNL+LVLEPS S+ SS S +S + +PR+FSCNYCQRK
Sbjct: 1 MDYQPNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRK 60
Query: 56 FYSSQALGGHQNAHKLERTLAKKSKE-FSSAVRAHGVSNNPRSGSSSIGSSSHASRIHQG 114
FYSSQALGGHQNAHKLERTLAKKS+E F S+ P SG + R +QG
Sbjct: 61 FYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPFSGRFEL-----YGRGYQG 115
Query: 115 HAHAGKFAGEFDYGIREVNYSSMSYSPHENVQDELSQLDLSLRL 158
+G G D+ R V S + + E S LDLSLRL
Sbjct: 116 FLESG---GSRDFSARRVPESGL------DQDQEKSHLDLSLRL 150
>sp|Q39266|ZFP7_ARATH Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1
Length = 209
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 8/104 (7%)
Query: 11 LSLP-SNQLNLDLVLEPSPSSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAH 69
LS P SN ++LDL L + + + S A PR+FSCNYC+RKFYSSQALGGHQNAH
Sbjct: 25 LSKPESNHVSLDLKLNDTFNDDTKSTKCE---ANPRVFSCNYCRRKFYSSQALGGHQNAH 81
Query: 70 KLERTLAKKSKEFSSAVRAHGVSNNPRS-GSSSIGSSSHASRIH 112
K ERT+AK++ R G + P + SSS+G +H+ +H
Sbjct: 82 KRERTMAKRAMHMG---RMFGHHHRPYTYTSSSLGMQAHSGLLH 122
>sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1
Length = 228
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 42 AEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSSAV 86
A+PR+FSCNYCQRKFYSSQALGGHQNAHK ERTLAK+ + + +
Sbjct: 63 ADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTL 107
>sp|Q39263|ZFP4_ARATH Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2
Length = 260
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 29 SSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSSAVRA 88
SSN P+ R+FSCNYCQRKFYSSQALGGHQNAHK ERTLAK++ A
Sbjct: 67 SSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLA--- 123
Query: 89 HGVSNNPRSGSSS 101
GV P GSSS
Sbjct: 124 -GVF--PGRGSSS 133
>sp|Q39262|ZFP3_ARATH Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
Length = 235
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 6/77 (7%)
Query: 15 SNQLNL-DLVLEPSPSSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAHKLER 73
S++LNL D + + + N S+ S E ++FSCNYCQR FYSSQALGGHQNAHK ER
Sbjct: 33 SHELNLIDCIDDTTSIVNESTTS-----TEQKLFSCNYCQRTFYSSQALGGHQNAHKRER 87
Query: 74 TLAKKSKEFSSAVRAHG 90
TLAK+ + +++ A G
Sbjct: 88 TLAKRGQRMAASASAFG 104
>sp|Q9FFX4|KNU_ARATH Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1
SV=1
Length = 161
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 79
R+F C YC RKFY+SQALGGHQNAHK ER A+++
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRN 70
>sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1
Length = 197
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 18 LNLDLVLEPSPSSNCSSPSPHS-PAAEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLA 76
++L+ S + S P P S +E R + C YC R+F +SQALGGHQNAHK ER L
Sbjct: 11 FGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLL 70
Query: 77 KKSKEFSS 84
K+++ ++
Sbjct: 71 KRAQMLAT 78
>sp|Q9LHS9|RBE_ARATH Probable transcriptional regulator RABBIT EARS OS=Arabidopsis
thaliana GN=RBE PE=2 SV=2
Length = 226
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 44 PRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKK 78
PR +SC++C R+F S+QALGGH N H+ +R K+
Sbjct: 52 PRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQ 86
>sp|Q38895|SUP_ARATH Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP
PE=1 SV=1
Length = 204
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 44 PRIFSCNYCQRKFYSSQALGGHQNAHKLER 73
PR ++C++C+R+F S+QALGGH N H+ +R
Sbjct: 44 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 73
>sp|Q6S592|JGL_ARATH Zinc finger protein JAGGED-like OS=Arabidopsis thaliana GN=JGL PE=2
SV=1
Length = 207
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSSAVRAHGVSNNPRSGSSSIGSSS 106
+ C +C KF+ SQALGGH N H+ ER +K +R P G S
Sbjct: 50 YECRFCSLKFFKSQALGGHMNRHRQERETESLNKARELVLRNDSFP--PHQGPPSFS--- 104
Query: 107 HASRIHQGHAHAGKFA 122
HQG H G
Sbjct: 105 ----YHQGDVHIGDLT 116
>sp|Q6S591|JAG_ARATH Zinc finger protein JAGGED OS=Arabidopsis thaliana GN=JAG PE=2
SV=1
Length = 253
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAHKLER 73
+++ C +C KF SQALGGH N H+ ER
Sbjct: 49 KVYECRFCSLKFCKSQALGGHMNRHRQER 77
>sp|Q9LG97|SL1_ORYSJ Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica
GN=SL1 PE=2 SV=1
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAHKLER 73
+++ C +C KF SQALGGH N H+ ER
Sbjct: 56 KVYECRFCSLKFCKSQALGGHMNRHRQER 84
>sp|Q42410|ZAT12_ARATH Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2
SV=1
Length = 162
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 43 EPRIFSCNYCQRKFYSSQALGGHQNAHK 70
+ R+F+C C ++F+S QALGGH+ +HK
Sbjct: 35 QKRVFTCKTCLKQFHSFQALGGHRASHK 62
>sp|Q9LX85|ZAT8_ARATH Zinc finger protein ZAT8 OS=Arabidopsis thaliana GN=ZAT8 PE=2
SV=1
Length = 164
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 41 AAEPRIFSCNYCQRKFYSSQALGGHQNAHK 70
E R+F C C ++F S QALGGH+ +HK
Sbjct: 31 GGEKRVFRCKTCLKEFSSFQALGGHRASHK 60
>sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1
PE=2 SV=1
Length = 172
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 26 PSPSSNCS---SPSPHSPAAEP----RIFSCNYCQRKFYSSQALGGHQNAHKLER 73
P + +CS S + H + R + C++C R F ++QALGGH N H+ +R
Sbjct: 7 PKNADDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDR 61
>sp|Q39264|ZFP5_ARATH Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1
Length = 211
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 49 CNYCQRKFYSSQALGGHQNAH 69
C YC ++F +SQALGGHQNAH
Sbjct: 62 CQYCGKEFANSQALGGHQNAH 82
>sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1
Length = 261
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 22 LVLEPSPSSNCSSPSPHSPAAE-PRIFSCNYCQRKFYSSQALGGHQNAHKLER 73
L+L +P P S AA P F C+ C + F S QALGGH+ +H++++
Sbjct: 64 LMLSRGGKQRVQAPQPESFAAPVPAEFKCSVCGKSFSSYQALGGHKTSHRVKQ 116
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 25 EPSPSSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAH 69
EP+ SS +S S A R+ C+ CQ++F + QALGGH+ H
Sbjct: 142 EPATSSTAAS----SDGATNRVHRCSICQKEFPTGQALGGHKRKH 182
>sp|Q42453|ZAT7_ARATH Zinc finger protein ZAT7 OS=Arabidopsis thaliana GN=ZAT7 PE=2
SV=1
Length = 168
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 43 EPRIFSCNYCQRKFYSSQALGGHQNAHK 70
+ R+F C C ++F S QALGGH+ +HK
Sbjct: 36 DERVFRCKTCLKEFSSFQALGGHRASHK 63
>sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
Length = 286
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 46 IFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSSAVRAHGVSNNPRSGSSSIGSS 105
++ C C R F S QALGGH+ +HK RT S+ + P+S +S G +
Sbjct: 114 VYECKTCNRTFSSFQALGGHRASHKKPRT--------STEEKTRLPLTQPKSSASEEGQN 165
Query: 106 SH 107
SH
Sbjct: 166 SH 167
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAHKLERT 74
++ C+ C +F S QALGGH H+ T
Sbjct: 188 KVHECSICGSEFTSGQALGGHMRRHRTAVT 217
>sp|Q96289|ZAT10_ARATH Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2
SV=1
Length = 227
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 37 PHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAHK--LERTLA 76
P PA E + C+ C + F S QALGGH+ +H+ L +TL+
Sbjct: 70 PPPPAVEKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQTLS 111
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 49 CNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSSAVRAHGVSNNPRSGSSSIGSSSHA 108
C C + F S QALGGH+ H E ++ + VSN S GS+SH
Sbjct: 138 CTICNKSFPSGQALGGHKRCHY----------EGNNNINTSSVSN-----SEGAGSTSHV 182
Query: 109 SRIHQG 114
S H+G
Sbjct: 183 SSSHRG 188
>sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1
Length = 267
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 49 CNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSSAVRAHGV-----------SNNPRS 97
C C + F + +ALGGH +H L L + + +SS++ G S P
Sbjct: 7 CKLCWKSFANGRALGGHMRSHMLIHPLPSQPESYSSSMADPGFVLQDRESETESSKKPSR 66
Query: 98 GSSSIGSSSHASRIHQGHAHAGK----FAGEFDYGIREVNYSSMSYSPHENVQD-ELSQL 152
S + S +S HQ GK A + G++E++ S P +V D ++
Sbjct: 67 KRSRLNRRSISSLRHQQSNEEGKSETARAADIKIGVQELSESCTEQEPMSSVSDAATTEE 126
Query: 153 DLSLRL 158
D++L L
Sbjct: 127 DVALSL 132
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAHK 70
+ F C C++ F S QALGGH+ +HK
Sbjct: 158 KWFECETCEKVFKSYQALGGHRASHK 183
>sp|Q9SSW2|AZF2_ARATH Zinc finger protein AZF2 OS=Arabidopsis thaliana GN=AZF2 PE=2 SV=1
Length = 273
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHKLE 72
+ CN C++ F S QALGGH+ +H+++
Sbjct: 106 YKCNVCEKAFPSYQALGGHKASHRIK 131
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 27 SPSSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAH 69
+P+ + + H AA +I C+ C + F + QALGGH+ H
Sbjct: 145 APTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCH 187
>sp|Q5EXX3|ZBT38_RAT Zinc finger and BTB domain-containing protein 38 OS=Rattus
norvegicus GN=Zbtb38 PE=2 SV=1
Length = 1203
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 26 PSPSSNCSSPSPHSPAAE--PRIFSCNYCQRKFYSSQALGGHQNAHK 70
P N S +P PAAE P +++C+ C + F SS LG H HK
Sbjct: 318 PREDENQPSETPGPPAAEVPPLVYNCSCCSKSFDSSTLLGAHMQLHK 364
>sp|Q63755|PRDM2_RAT PR domain zinc finger protein 2 OS=Rattus norvegicus GN=Prdm2 PE=2
SV=1
Length = 1706
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
Query: 21 DLVLEPSPSSNCS-------SPSPHSPAA---------EPRIFSCNYCQRKFYSSQALGG 64
DL+ EP SN + +P PH+P A E +F C +C+RKF + Q L
Sbjct: 313 DLLEEPQSMSNEAREDSPDVTPPPHTPRAREEANGDVLETFMFPCQHCERKFATKQGLER 372
Query: 65 HQNAH 69
H + H
Sbjct: 373 HMHIH 377
>sp|P17040|ZSC20_HUMAN Zinc finger and SCAN domain-containing protein 20 OS=Homo sapiens
GN=ZSCAN20 PE=2 SV=3
Length = 1043
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 27 SPSSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAHKLER--TLAKKSKEFSS 84
S S + +SP PHS + +++ C+ C R F S AL HQ H E+ A+ K FS
Sbjct: 855 SISKDLNSPGPHSTNSGEKLYECSECGRSFSKSSALISHQRIHTGEKPYECAECGKSFSK 914
Query: 85 A 85
+
Sbjct: 915 S 915
>sp|A5IV34|RL3_STAA9 50S ribosomal protein L3 OS=Staphylococcus aureus (strain JH9)
GN=rplC PE=3 SV=1
Length = 220
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRSGSS-------SIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S SS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHSSHFHRAPDSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q9SHD0|ZAT4_ARATH Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFSS 84
F C C + F S QALGGH+ +HK + K+++ +
Sbjct: 194 FKCETCGKVFKSYQALGGHRASHKKNKACMTKTEQVET 231
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 41 AAEPRIFSCNYCQRKFYSSQALGGHQNAH 69
E ++ C C R F S QALGGH+ +H
Sbjct: 237 VKEKKVHECPICFRVFTSGQALGGHKRSH 265
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHKL 71
+ C +C + F + +ALGGH +H L
Sbjct: 4 YKCRFCFKSFINGRALGGHMRSHML 28
>sp|Q9SSW1|AZF1_ARATH Zinc finger protein AZF1 OS=Arabidopsis thaliana GN=AZF1 PE=2 SV=1
Length = 245
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 33 SSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAHK 70
+SPS H R + C C + F S QALGGH+ +H+
Sbjct: 89 ASPSDH------RDYKCTVCGKSFSSYQALGGHKTSHR 120
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAH 69
+I +C+ C + F S QALGGH+ H
Sbjct: 162 KIHTCSICFKSFASGQALGGHKRCH 186
>sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2
SV=1
Length = 178
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHK 70
F C C ++F S QALGGH+ +HK
Sbjct: 47 FECKTCNKRFSSFQALGGHRASHK 70
>sp|O22533|ZAT6_ARATH Zinc finger protein ZAT6 OS=Arabidopsis thaliana GN=ZAT6 PE=2 SV=1
Length = 238
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 46 IFSCNYCQRKFYSSQALGGHQNAHKLERTLAK 77
I+ C+ C + F S QALGGH+ +H+ +L +
Sbjct: 88 IYKCSVCDKAFSSYQALGGHKASHRKSFSLTQ 119
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 49 CNYCQRKFYSSQALGGHQNAH 69
C+ C + F + QALGGH+ H
Sbjct: 150 CSICHKSFATGQALGGHKRCH 170
>sp|P60450|RL3_STAAW 50S ribosomal protein L3 OS=Staphylococcus aureus (strain MW2)
GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q6G771|RL3_STAAS 50S ribosomal protein L3 OS=Staphylococcus aureus (strain MSSA476)
GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q6GEI3|RL3_STAAR 50S ribosomal protein L3 OS=Staphylococcus aureus (strain MRSA252)
GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|P60449|RL3_STAAN 50S ribosomal protein L3 OS=Staphylococcus aureus (strain N315)
GN=rplC PE=1 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|P60448|RL3_STAAM 50S ribosomal protein L3 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rplC PE=1 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|A6QJ92|RL3_STAAE 50S ribosomal protein L3 OS=Staphylococcus aureus (strain Newman)
GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q2YYP6|RL3_STAAB 50S ribosomal protein L3 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q2FW06|RL3_STAA8 50S ribosomal protein L3 OS=Staphylococcus aureus (strain NCTC
8325) GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q2FEN9|RL3_STAA3 50S ribosomal protein L3 OS=Staphylococcus aureus (strain USA300)
GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|A6U3X5|RL3_STAA2 50S ribosomal protein L3 OS=Staphylococcus aureus (strain JH1)
GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|A7X5G3|RL3_STAA1 50S ribosomal protein L3 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rplC PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 116 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 175
>sp|Q5HDV8|RL3_STAAC 50S ribosomal protein L3 OS=Staphylococcus aureus (strain COL)
GN=rplC PE=3 SV=1
Length = 209
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 LERTLAKKSKEFSSAVRAHGVSNNPRS-GS------SSIGSSSHASRIHQGHAHAGKFAG 123
++ T K K F A++ HG S P S GS S+G +S ASR+ +G G+ G
Sbjct: 105 IDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGG 164
>sp|Q9NW07|ZN358_HUMAN Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 PE=1 SV=2
Length = 568
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 39 SPAAEPRIFSCNYCQRKFYSSQALGGHQNAHKLER 73
+PA+ PR FSC C R F S L H+ H E+
Sbjct: 143 APASPPRPFSCPDCGRAFRRSSGLSQHRRTHSGEK 177
>sp|Q9SIJ0|ZAT2_ARATH Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=2 SV=1
Length = 270
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHK 70
F C+ C++ F S QALGGH+ HK
Sbjct: 148 FECDGCKKVFGSHQALGGHRATHK 171
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 49 CNYCQRKFYSSQALGGHQNAH 69
CN C R F S QALGGH H
Sbjct: 213 CNICSRVFSSGQALGGHMRCH 233
>sp|Q9UL36|ZN236_HUMAN Zinc finger protein 236 OS=Homo sapiens GN=ZNF236 PE=2 SV=2
Length = 1845
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 43 EPRIFSCNYCQRKFYSSQALGGHQNAHKLER----TLAKKSKEFSSAVRAH 89
+PR+F C+ C++ F L H H ER TL +K+ SA++ H
Sbjct: 1718 KPRVFKCDTCEKAFAKPSQLERHSRIHTGERPFHCTLCEKAFNQKSALQVH 1768
>sp|Q3KNW1|SNAI3_HUMAN Zinc finger protein SNAI3 OS=Homo sapiens GN=SNAI3 PE=2 SV=1
Length = 292
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFS 83
R+F+C YC +++ S AL H H L T K FS
Sbjct: 181 RVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFS 219
>sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1
Length = 288
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 45 RIFSCNYCQRKFYSSQALGGHQNAH 69
RI C C R F S QALGGH+ +H
Sbjct: 222 RIHECPICLRVFASGQALGGHKRSH 246
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKEFS 83
+ C C + F S QALGGH+ +HK R K+++ S
Sbjct: 173 YKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRS 209
>sp|Q5IS77|ACHA4_PANTR Neuronal acetylcholine receptor subunit alpha-4 OS=Pan troglodytes
GN=CHRNA4 PE=2 SV=1
Length = 627
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 8 SLHLSLPSNQLNLDLVLEPSPSSNCSSPSPHSPAAEP 44
SLH PS + LD+ EP PS C SPS PA +P
Sbjct: 400 SLHPPSPSFCIPLDVPAEPGPS--CKSPSDQLPAQQP 434
>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1
SV=1
Length = 503
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 26 PSPSSNCSSPSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKE 81
P P ++ + SP + A R F C C + F Q L H+ H L L ++SK+
Sbjct: 62 PDPDADVIALSPTTLMATNR-FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQ 116
>sp|O65499|ZAT3_ARATH Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1
Length = 284
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 47 FSCNYCQRKFYSSQALGGHQNAHK 70
F C C++ F S QALGGH+ +HK
Sbjct: 162 FECGGCKKVFGSHQALGGHRASHK 185
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 49 CNYCQRKFYSSQALGGHQNAH 69
CN C R F S QALGGH H
Sbjct: 224 CNICFRVFSSGQALGGHMRCH 244
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 35 PSPHSPAAEPRIFSCNYCQRKFYSSQALGGHQNAH 69
P P++P C C RKF+S +AL GH H
Sbjct: 68 PDPNAPKI---TRPCTECGRKFWSWKALFGHMRCH 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,223,259
Number of Sequences: 539616
Number of extensions: 2268128
Number of successful extensions: 12349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 11200
Number of HSP's gapped (non-prelim): 1195
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)