BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031498
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 137/159 (86%), Gaps = 3/159 (1%)
Query: 3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D +PLPNVTS IL+KVIEYCK+
Sbjct: 2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 63 HVEAGSGDKK---DDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
HVEA + + +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct: 62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121
Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
ADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 182 bits (462), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 7/152 (4%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA 66
I L+SSDGE FEV+ +A +S TIK M+ED D V PLPNV + IL KVI++C H +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 62
Query: 67 GSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK 126
G S DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGK
Sbjct: 63 PGG------SGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 116
Query: 127 TPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
TPEEIRKTFNIKNDF+ +EE +VR+ENQW E
Sbjct: 117 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 7/152 (4%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA 66
I L+SSDGE FEV+ +A +S TIK M+ED D V PLPNV + IL KVI++C H +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 62
Query: 67 GSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK 126
G S DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGK
Sbjct: 63 PGG------SGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 116
Query: 127 TPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
TPEEIRKTFNIKNDF+ +EE +VR+ENQW E
Sbjct: 117 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 115/152 (75%), Gaps = 11/152 (7%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA 66
I L+SSDGE FEV+ +A +S TIK M+ED D V PLPNV + IL KVI++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHH--- 59
Query: 67 GSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK 126
KDD DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGK
Sbjct: 60 -----KDDPP--DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 112
Query: 127 TPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
TPEEIRKTFNIKNDF+ +EE +VR+ENQW E
Sbjct: 113 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 144
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 117/159 (73%), Gaps = 7/159 (4%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCK 61
I L+SSDGE FEV+ +A +S TIK M+ED + D +PLPNV + IL KVI++C
Sbjct: 7 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 66
Query: 62 KH--VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
H D ++ + DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TV
Sbjct: 67 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 126
Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
A+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW E
Sbjct: 127 ANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 165
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 116/157 (73%), Gaps = 7/157 (4%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCK 61
I L+SSDGE FEV+ +A +S TIK M+ED + D +PLPNV + IL KVI++C
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62
Query: 62 KH--VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
H D ++ + DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TV
Sbjct: 63 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156
A+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW
Sbjct: 123 ANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 159 bits (403), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH--V 64
I L+SSDGE FEV+ +A +S TIK M+ED D V PLPNV + IL KVI++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 62
Query: 65 EAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 124
D ++ + DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIK
Sbjct: 63 PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122
Query: 125 GKTPEEIRKTFNIKNDFS 142
GKTPEEIRKTFNIKNDF+
Sbjct: 123 GKTPEEIRKTFNIKNDFT 140
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 111/158 (70%), Gaps = 8/158 (5%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVED-------DCADTVIPLPNVTSTILSKVIEY 59
+ L S +GE F V++ +A S +K+ + D D + V+P+PNV S++L KVIE+
Sbjct: 9 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEW 68
Query: 60 CKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
+ H ++ D+ DD S + + +WD +F+KVDQ L+++ILAANYLNIK LLD C+
Sbjct: 69 AEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKV 128
Query: 119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156
VA+MI+G++PEEIR+TFNI NDF+P+EE +RREN+WA
Sbjct: 129 VAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 149 bits (375), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 98/132 (74%), Gaps = 3/132 (2%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH--V 64
I L+SSDGE FEV+ +A +S TIK M+ED D V PLPNV + IL KVI++C H
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 61
Query: 65 EAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 124
D ++ + DD+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIK
Sbjct: 62 PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 121
Query: 125 GKTPEEIRKTFN 136
GKTPEEIRKTFN
Sbjct: 122 GKTPEEIRKTFN 133
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 146 bits (368), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 108/158 (68%), Gaps = 8/158 (5%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCADT-------VIPLPNVTSTILSKVIEY 59
+ L S +GE F V++ +A S +K+ + D D V P+PNV S++L KVIE+
Sbjct: 9 VVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKVIEW 68
Query: 60 CKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
+ H ++ D+ DD S + + +WD +F+KVDQ L+++ILAANYLNIK LLD C+
Sbjct: 69 AEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEXLYEIILAANYLNIKPLLDAGCKV 128
Query: 119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156
VA+ I+G++PEEIR+TFNI NDF+P+EE +RREN+WA
Sbjct: 129 VAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A
Von Hippel-Lindau Peptide
Length = 99
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADT--VIPLPNVTSTILSKVIEYC 60
S+ +TL S D + +E+ + A+ S T+K M+E ++ I L S IL K +EY
Sbjct: 2 SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61
Query: 61 KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNI 108
+++ + DD+ E ++ T +L+LAA+YL+I
Sbjct: 62 NYNLKYSGVSEDDDEIPEFEIPT----------EMSLELLLAADYLSI 99
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 29.3 bits (64), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 472 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 504
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 472 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 504
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|4FDW|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Bacova_01565) From Bacteroides Ovatus Atcc 8483 At 2.05
A Resolution
Length = 401
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 9 LKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE 65
LK+S +T E+ E V+ TI + T + LPN + I S+ YC + E
Sbjct: 223 LKTSQLKTIEIPENVS----TIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAE 275
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 9 LKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE 65
LK+S +T E+ E V +TI + T + LPN +TI + YC + E
Sbjct: 226 LKTSQLKTIEIPENV----RTIGLEAFRESGITTVKLPNGVTTIAQRAFYYCPELTE 278
>pdb|1U9C|A Chain A, Crystallographic Structure Of Apc35852
Length = 224
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 64 VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDL------------------ILAANY 105
EA + K + ++DD +DA F+ T+FD I+AA
Sbjct: 70 AEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVX 129
Query: 106 LNIKGLLDLTCQTVADMIKGKT 127
GL++ T + ++KGKT
Sbjct: 130 HGPSGLVNATYKDGTPIVKGKT 151
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 76 STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 135
ST + W K +N F++ L+ K D + VA +KG+TPEE++K +
Sbjct: 15 STRGSGRPW-----KFSENIAFEIALS---FTNKDTPD-RWKKVAQYVKGRTPEEVKKHY 65
Query: 136 NI 137
+
Sbjct: 66 EL 67
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 69 GDKKDDKSTEDDLKTWDADFVKVDQNTLFDL 99
G + DD+S + D+KTW + VD N + ++
Sbjct: 80 GRRFDDESVQKDMKTWPFKVIDVDGNPVIEV 110
>pdb|4B9K|E Chain E, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
Length = 97
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMV-------EDDCADTVIPLPNVTSTILSKVIEY 59
+ L SSDG F V+ AL S TIK M+ E++ + + + S +LSKV Y
Sbjct: 4 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNE--VNFREIPSHVLSKVCMY 61
Query: 60 CKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYL 106
V + + STE +F + +L++AAN+L
Sbjct: 62 FTYKV------RYTNSSTEIP------EF-PIAPEIALELLMAANFL 95
>pdb|1VCB|B Chain B, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|E Chain E, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|H Chain H, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|K Chain K, The Vhl-Elonginc-Elonginb Structure
Length = 112
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----DTVIPLPNVTSTILSKVIEYCK 61
+ L SSDG F V+ AL S TIK M+ + + S +LSKV Y
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 62 KHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLN 107
V + + STE +F + +L++AAN+L+
Sbjct: 79 YKV------RYTNSSTE------IPEF-PIAPEIALELLMAANFLD 111
>pdb|2C9W|C Chain C, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
pdb|2IZV|C Chain C, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
pdb|3DCG|B Chain B, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
pdb|3DCG|D Chain D, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
pdb|3ZRC|B Chain B, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|E Chain E, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|H Chain H, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|K Chain K, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRF|B Chain B, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|E Chain E, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|H Chain H, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|K Chain K, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZTC|B Chain B, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|E Chain E, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|H Chain H, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|K Chain K, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTD|B Chain B, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|E Chain E, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|H Chain H, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|K Chain K, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZUN|B Chain B, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|E Chain E, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|H Chain H, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|K Chain K, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|4B95|B Chain B, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|E Chain E, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|H Chain H, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|K Chain K, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B9K|B Chain B, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|H Chain H, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|K Chain K, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4AJY|C Chain C, Von Hippel-Lindau Protein-Elonginb-Elonginc Complex, Bound
To Hif1- Alpha Peptide
pdb|4AWJ|B Chain B, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|E Chain E, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|H Chain H, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|K Chain K, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
Length = 97
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMV-------EDDCADTVIPLPNVTSTILSKVIEY 59
+ L SSDG F V+ AL S TIK M+ E++ + + + S +LSKV Y
Sbjct: 4 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNE--VNFREIPSHVLSKVCMY 61
Query: 60 CKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYL 106
V + + STE +F + +L++AAN+L
Sbjct: 62 FTYKV------RYTNSSTEIP------EF-PIAPEIALELLMAANFL 95
>pdb|1LM8|C Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
pdb|1LQB|B Chain B, Crystal Structure Of A Hydroxylated Hif-1 Alpha Peptide
Bound To The PvhlELONGIN-CELONGIN-B Complex
pdb|2FNJ|C Chain C, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
pdb|2JZ3|C Chain C, Socs Box Elonginbc Ternary Complex
pdb|3ZKJ|B Chain B, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|E Chain E, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 96
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 7 ITLKSSDGETFEVEETVALESQTIKHMV-------EDDCADTVIPLPNVTSTILSKVIEY 59
+ L SSDG F V+ AL S TIK M+ E++ + + + S +LSKV Y
Sbjct: 3 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNE--VNFREIPSHVLSKVCMY 60
Query: 60 CKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYL 106
V + + STE +F + +L++AAN+L
Sbjct: 61 FTYKV------RYTNSSTEIP------EF-PIAPEIALELLMAANFL 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,725,349
Number of Sequences: 62578
Number of extensions: 183261
Number of successful extensions: 449
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 30
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)