Query 031498
Match_columns 158
No_of_seqs 132 out of 785
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 00:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 2.4E-57 8.3E-62 332.3 16.6 157 1-158 4-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 1.4E-55 4.7E-60 320.6 4.5 157 1-158 1-160 (160)
3 2ast_A S-phase kinase-associat 100.0 7.8E-51 2.7E-55 295.4 16.0 151 6-156 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 6.8E-48 2.3E-52 274.8 12.9 137 6-143 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 100.0 8.3E-30 2.8E-34 171.0 6.6 97 1-108 1-99 (99)
6 1vcb_B Protein (elongin C); tu 99.9 2.8E-28 9.7E-33 166.8 7.6 93 3-108 15-112 (112)
7 2fnj_C Transcription elongatio 99.9 2.8E-28 9.5E-33 162.7 6.5 91 5-108 1-96 (96)
8 4ajy_C Transcription elongatio 99.9 5.5E-26 1.9E-30 151.9 7.2 90 6-108 3-97 (97)
9 2yy9_A Zinc finger and BTB dom 99.3 2.4E-12 8.2E-17 90.0 5.8 97 6-128 27-124 (135)
10 2vkp_A BTB/POZ domain-containi 99.3 3.5E-11 1.2E-15 80.5 10.1 93 6-122 10-108 (109)
11 1buo_A POZ domain, protein (pr 99.2 8.2E-11 2.8E-15 80.5 10.4 91 6-123 30-121 (121)
12 2if5_A Zinc finger and BTB dom 99.2 3E-10 1E-14 77.3 10.9 89 6-119 27-119 (120)
13 2vpk_A Myoneurin; transcriptio 99.2 2.9E-10 9.8E-15 77.1 10.6 89 6-120 24-115 (116)
14 3b84_A Zinc finger and BTB dom 99.2 8.1E-11 2.8E-15 80.3 7.8 90 6-121 26-116 (119)
15 3htm_A Speckle-type POZ protei 99.2 3.5E-10 1.2E-14 81.3 11.3 103 6-133 36-142 (172)
16 2q81_A MIZ-1 protein; BTB/POZ 99.2 2.1E-10 7.2E-15 78.2 9.3 88 6-120 29-117 (119)
17 3ga1_A Nucleus accumbens-assoc 99.1 9.3E-11 3.2E-15 81.1 7.2 90 6-121 35-126 (129)
18 1r29_A B-cell lymphoma 6 prote 99.1 5.3E-10 1.8E-14 76.9 10.3 91 6-121 31-125 (127)
19 4eoz_A Speckle-type POZ protei 99.1 2.1E-10 7.1E-15 80.3 7.2 100 6-130 27-130 (145)
20 2ppi_A Gigaxonin; BTB domain, 99.1 3.8E-10 1.3E-14 79.6 8.3 89 6-119 49-143 (144)
21 2z8h_A Transcription regulator 99.1 3.8E-10 1.3E-14 78.9 8.2 95 6-125 38-135 (138)
22 3ohu_A Transcription regulator 99.0 1.3E-10 4.6E-15 79.7 2.9 88 6-118 34-124 (125)
23 3hve_A Gigaxonin; ubiquitin, c 99.0 1.4E-09 4.7E-14 83.2 8.4 100 6-130 33-138 (256)
24 3i3n_A Kelch-like protein 11; 99.0 1E-09 3.6E-14 85.0 7.4 102 6-131 34-147 (279)
25 3m5b_A Zinc finger and BTB dom 98.9 9E-10 3.1E-14 75.4 4.0 85 6-121 32-117 (119)
26 3hqi_A Speckle-type POZ protei 98.9 1.1E-08 3.6E-13 80.3 10.4 103 6-133 176-282 (312)
27 2ihc_A Transcription regulator 98.9 1.1E-09 3.7E-14 75.2 3.9 89 6-119 31-122 (124)
28 3fkc_A Transcriptional regulat 98.8 9.6E-09 3.3E-13 69.7 7.2 82 6-113 33-115 (116)
29 3drz_A BTB/POZ domain-containi 95.8 0.072 2.5E-06 35.0 8.4 94 3-121 4-106 (107)
30 3drx_A BTB/POZ domain-containi 88.3 0.61 2.1E-05 34.2 4.4 94 4-122 11-113 (202)
31 3tnt_A SARS coronavirus main p 85.6 2.7 9.2E-05 32.3 6.8 102 43-147 191-297 (306)
32 3tlo_A 3CL-Pro, 3CLP, 3C-like 81.7 1.7 5.8E-05 33.4 4.2 101 43-147 191-294 (303)
33 3d23_B 3C-like proteinase; mai 81.0 2.9 0.0001 32.0 5.3 101 43-147 193-296 (302)
34 3kvt_A Potassium channel prote 80.0 0.86 3E-05 30.3 1.9 92 1-117 1-99 (115)
35 2q6f_A Fragment, infectious br 70.9 8.2 0.00028 29.7 5.4 100 43-146 191-299 (309)
36 2k9n_A MYB24; R2R3 domain, DNA 69.0 9.5 0.00032 24.5 4.9 35 117-151 25-66 (107)
37 1s1g_A Potassium voltage-gated 68.7 4.4 0.00015 27.1 3.2 86 6-118 14-107 (124)
38 1lvo_A Replicase, hydrolase do 66.9 6.2 0.00021 30.2 4.0 101 43-147 190-293 (302)
39 1gv2_A C-MYB, MYB proto-oncoge 65.3 7.6 0.00026 24.7 3.8 35 117-151 28-69 (105)
40 1h8a_C AMV V-MYB, MYB transfor 64.1 11 0.00039 24.9 4.6 36 116-151 50-92 (128)
41 3i3n_A Kelch-like protein 11; 59.0 14 0.00047 27.6 4.8 72 85-156 131-213 (279)
42 2eqx_A Kelch repeat and BTB do 57.3 7.9 0.00027 24.7 2.7 46 91-136 8-62 (105)
43 3htm_A Speckle-type POZ protei 57.1 8.4 0.00029 26.2 3.1 42 83-124 122-165 (172)
44 3osg_A MYB21; transcription-DN 56.7 15 0.00051 24.3 4.1 36 116-151 33-75 (126)
45 2nz0_B Potassium voltage-gated 56.4 7.4 0.00025 26.6 2.6 89 5-118 35-129 (140)
46 1pd7_B MAD1; PAH2, SIN3, eukar 56.4 2.9 0.0001 20.1 0.4 12 96-107 5-16 (26)
47 3zqc_A MYB3; transcription-DNA 54.6 6.8 0.00023 26.2 2.2 34 118-151 27-67 (131)
48 3g5o_A Uncharacterized protein 53.9 26 0.00089 22.6 4.9 49 91-139 47-97 (108)
49 1wgx_A KIAA1903 protein; MYB D 53.9 8.9 0.0003 23.3 2.3 20 117-136 35-54 (73)
50 1ug2_A 2610100B20RIK gene prod 53.9 9.5 0.00032 24.3 2.5 20 117-136 59-78 (95)
51 2cqq_A RSGI RUH-037, DNAJ homo 53.8 9.4 0.00032 23.0 2.5 18 118-136 36-53 (72)
52 1nn7_A Potassium channel KV4.2 51.7 7.4 0.00025 25.1 1.9 81 13-118 7-94 (105)
53 4eef_G F-HB80.4, designed hema 51.0 3.8 0.00013 25.0 0.3 45 91-139 25-69 (74)
54 2c35_A Human RPB4, DNA-directe 49.0 62 0.0021 22.2 7.4 56 92-151 86-142 (152)
55 3hve_A Gigaxonin; ubiquitin, c 48.2 15 0.0005 27.0 3.3 65 91-156 131-205 (256)
56 1t1d_A Protein (potassium chan 45.8 19 0.00064 23.0 3.1 81 12-116 7-94 (100)
57 2xf7_A GP23.1; viral protein; 45.6 26 0.0009 19.1 3.1 35 119-155 11-46 (51)
58 2cjj_A Radialis; plant develop 43.4 15 0.0005 23.3 2.3 20 117-136 35-54 (93)
59 1h89_C C-MYB, MYB proto-oncoge 43.3 23 0.00077 24.3 3.5 35 117-151 82-123 (159)
60 3hm5_A DNA methyltransferase 1 42.9 26 0.00089 22.2 3.4 18 118-135 54-76 (93)
61 1x41_A Transcriptional adaptor 42.5 19 0.00065 20.4 2.5 20 117-136 32-51 (60)
62 2qq4_A Iron-sulfur cluster bio 40.9 27 0.00092 23.6 3.5 37 99-135 53-90 (138)
63 3lvl_A NIFU-like protein; prot 40.3 25 0.00087 23.4 3.2 38 99-136 53-91 (129)
64 1xjs_A NIFU-like protein; SR17 39.2 29 0.001 23.7 3.5 38 99-136 55-93 (147)
65 2lr8_A CAsp8-associated protei 44.9 6.5 0.00022 23.6 0.0 21 115-136 38-58 (70)
66 1ni7_A ER75, hypothetical prot 36.9 50 0.0017 22.8 4.4 34 111-144 87-128 (155)
67 2eqr_A N-COR1, N-COR, nuclear 36.8 22 0.00076 20.3 2.2 20 117-136 35-54 (61)
68 2cqr_A RSGI RUH-043, DNAJ homo 36.8 11 0.00039 22.7 0.9 21 116-136 44-64 (73)
69 3mkl_A HTH-type transcriptiona 36.4 81 0.0028 19.9 8.2 80 47-139 3-85 (120)
70 1su0_B NIFU like protein ISCU; 36.3 39 0.0013 23.4 3.8 38 99-136 54-92 (159)
71 2yus_A SWI/SNF-related matrix- 35.8 27 0.00091 21.3 2.5 39 92-136 22-60 (79)
72 2yum_A ZZZ3 protein, zinc fing 35.8 26 0.00089 20.7 2.5 20 116-135 36-55 (75)
73 2f2c_A Cyclin homolog, V-cycli 35.5 37 0.0013 25.0 3.8 41 110-150 95-136 (254)
74 2ra2_A Putative lipoprotein; X 34.4 28 0.00095 20.5 2.3 18 1-19 1-18 (64)
75 3hqi_A Speckle-type POZ protei 33.8 26 0.00088 26.4 2.7 42 83-124 262-305 (312)
76 2elk_A SPCC24B10.08C protein; 33.6 32 0.0011 19.3 2.5 38 93-135 14-52 (58)
77 3g0m_A Cysteine desulfuration 33.6 42 0.0014 22.8 3.5 34 111-144 80-121 (141)
78 1y14_A B32, RPB4, DNA-directed 33.2 1.3E+02 0.0045 21.5 6.7 42 109-151 136-178 (187)
79 1jw2_A Hemolysin expression mo 33.0 71 0.0024 19.2 4.0 15 91-105 35-49 (72)
80 1tc3_C Protein (TC3 transposas 32.5 46 0.0016 16.7 3.0 16 123-138 19-34 (51)
81 1go3_F DNA-directed RNA polyme 31.8 1E+02 0.0035 19.7 6.3 38 111-151 64-101 (107)
82 3few_X Colicin S4; cell lysis, 31.3 50 0.0017 26.8 3.9 27 115-141 164-190 (505)
83 3d55_A Antitoxin, uncharacteri 30.8 25 0.00086 21.7 1.8 47 92-138 39-90 (91)
84 2f6h_X Myosin-2, type V myosin 30.5 68 0.0023 25.7 4.8 43 93-135 282-324 (419)
85 2z7e_A ISCU protein, NIFU-like 30.2 36 0.0012 23.6 2.7 38 99-136 52-90 (157)
86 4eo3_A Bacterioferritin comigr 29.9 17 0.00059 28.0 1.1 57 6-62 104-176 (322)
87 3phx_B Ubiquitin-like protein 29.6 33 0.0011 20.0 2.2 35 1-35 1-35 (79)
88 2ki0_A DS119; beta-alpha-beta, 29.6 34 0.0012 17.0 1.8 11 142-152 13-23 (36)
89 2cu7_A KIAA1915 protein; nucle 29.4 39 0.0013 19.8 2.5 20 117-136 32-51 (72)
90 2jsp_A Transcriptional regulat 29.0 25 0.00086 22.0 1.6 17 125-141 43-59 (87)
91 4eb5_C NIFU protein (NIFU-1); 28.8 38 0.0013 23.4 2.6 36 99-134 47-83 (153)
92 1x3u_A Transcriptional regulat 28.3 56 0.0019 18.8 3.1 17 122-138 28-44 (79)
93 1upt_B Golgi autoantigen, golg 28.1 49 0.0017 19.2 2.6 40 108-151 7-46 (60)
94 1guu_A C-MYB, MYB proto-oncoge 28.1 31 0.0011 18.7 1.7 19 117-135 27-45 (52)
95 2ftc_M Mitochondrial ribosomal 27.2 43 0.0015 21.7 2.5 22 116-137 13-34 (110)
96 3o39_A Periplasmic protein rel 27.1 32 0.0011 22.3 1.9 28 126-153 76-103 (108)
97 1j2j_B ADP-ribosylation factor 27.0 82 0.0028 17.1 3.2 19 115-133 9-27 (45)
98 2llk_A Cyclin-D-binding MYB-li 26.9 46 0.0016 19.9 2.5 20 116-136 45-64 (73)
99 1ofc_X ISWI protein; nuclear p 26.7 37 0.0013 26.3 2.5 44 88-136 110-153 (304)
100 1g3n_C V-cyclin; cyclin-depend 26.1 37 0.0013 25.0 2.3 39 110-150 94-135 (257)
101 3cra_A Protein MAZG; tandem-re 25.6 85 0.0029 23.7 4.3 54 94-149 198-254 (265)
102 2d9a_A B-MYB, MYB-related prot 25.6 44 0.0015 18.7 2.1 20 117-136 32-51 (60)
103 1f5q_B Gamma herpesvirus cycli 25.3 32 0.0011 25.6 1.8 42 110-151 92-134 (252)
104 1w98_B Cyclin E, G1/S-specific 25.2 52 0.0018 24.7 3.1 39 109-150 93-135 (283)
105 3hou_D DNA-directed RNA polyme 24.9 2.1E+02 0.0071 21.0 6.9 43 109-152 170-213 (221)
106 1i4j_A 50S ribosomal protein L 24.7 49 0.0017 21.4 2.5 22 116-137 17-38 (110)
107 3kf9_B MLCK2, myosin light cha 24.6 25 0.00084 16.1 0.7 10 97-106 8-17 (22)
108 4iej_A DNA methyltransferase 1 24.3 78 0.0027 20.0 3.3 18 118-135 54-76 (93)
109 1je8_A Nitrate/nitrite respons 24.3 65 0.0022 19.1 2.9 16 123-138 34-49 (82)
110 1dd4_C 50S ribosomal protein L 24.1 88 0.003 16.4 3.2 23 117-139 4-33 (40)
111 2jqt_A H-NS/STPA-binding prote 23.9 76 0.0026 19.0 2.9 15 91-105 30-45 (71)
112 3mmi_A Myosin-4; globular tail 23.9 1.9E+02 0.0064 23.1 6.1 17 93-109 265-281 (386)
113 4b0z_A RPN12, 26S proteasome r 23.5 70 0.0024 23.3 3.4 63 92-157 149-219 (229)
114 2w9y_A CE-FAR-7, fatty acid/re 23.5 57 0.002 22.2 2.7 48 108-155 88-137 (140)
115 2guz_B Mitochondrial import in 23.4 69 0.0024 18.6 2.7 21 126-146 1-24 (65)
116 2kw0_A CCMH protein; oxidoredu 23.1 58 0.002 20.4 2.5 12 124-135 55-66 (90)
117 1xb4_A VPS25, hypothetical 23. 22.8 36 0.0012 24.7 1.6 13 55-67 33-45 (202)
118 3r8s_S 50S ribosomal protein L 22.7 57 0.0019 21.1 2.5 21 116-136 17-37 (110)
119 1gvd_A MYB proto-oncogene prot 22.3 35 0.0012 18.5 1.2 20 117-136 27-46 (52)
120 2hl7_A Cytochrome C-type bioge 22.3 62 0.0021 20.0 2.5 12 124-135 58-69 (84)
121 2b67_A COG0778: nitroreductase 22.0 36 0.0012 23.7 1.5 34 97-140 140-173 (204)
122 2dim_A Cell division cycle 5-l 22.0 59 0.002 18.8 2.3 19 117-135 33-51 (70)
123 2jpc_A SSRB; DNA binding prote 21.8 66 0.0023 17.4 2.4 18 122-139 10-27 (61)
124 2fre_A NAD(P)H-flavin oxidored 21.7 40 0.0014 23.6 1.7 36 95-140 117-152 (200)
125 2b9r_A Human cyclin B1; cell c 21.6 51 0.0017 24.5 2.3 39 109-150 80-122 (269)
126 2cch_B Cyclin A2, cyclin-A; co 21.2 52 0.0018 24.2 2.3 38 110-150 82-123 (260)
127 1a92_A Delta antigen; leucine 21.2 48 0.0017 18.3 1.6 14 143-156 27-40 (50)
128 2iw5_B Protein corest, REST co 20.4 62 0.0021 24.0 2.5 21 116-136 155-175 (235)
129 2din_A Cell division cycle 5-l 20.4 65 0.0022 18.4 2.2 19 117-136 32-50 (66)
130 3cuq_C Vacuolar protein-sortin 20.3 43 0.0015 23.7 1.6 12 55-66 36-47 (176)
131 3h4o_A Nitroreductase family p 20.2 49 0.0017 23.1 1.9 35 96-140 119-153 (191)
132 1rz4_A Eukaryotic translation 20.2 1.6E+02 0.0053 21.5 4.7 48 107-157 130-181 (226)
133 4dyq_A Gene 1 protein; GP1, oc 20.1 86 0.0029 20.8 3.1 26 111-139 17-42 (140)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=2.4e-57 Score=332.28 Aligned_cols=157 Identities=48% Similarity=0.854 Sum_probs=134.0
Q ss_pred CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----C--CceecCCCCHHHHHHHHHHHHHhcccCCCCC-C
Q 031498 1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----D--TVIPLPNVTSTILSKVIEYCKKHVEAGSGDK-K 72 (158)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~-----~--~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~-~ 72 (158)
|| +++|+|+|+||++|.|++.+|.+|++|++|+++.+. + .+||||+|++.+|++|++||+||+.++.+.. .
T Consensus 4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~ 82 (169)
T 3v7d_A 4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD 82 (169)
T ss_dssp ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence 66 689999999999999999999999999999997653 3 7899999999999999999999998875432 1
Q ss_pred CCCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHh
Q 031498 73 DDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRE 152 (158)
Q Consensus 73 ~~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e 152 (158)
...+....+++||++|++++++.||+||.|||||+|++|+++||++||++|+||||+|||++|||++|||||||+++|+|
T Consensus 83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e 162 (169)
T 3v7d_A 83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE 162 (169)
T ss_dssp -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 23345677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 031498 153 NQWAFE 158 (158)
Q Consensus 153 ~~w~~~ 158 (158)
|+|+||
T Consensus 163 n~W~~~ 168 (169)
T 3v7d_A 163 NEWAED 168 (169)
T ss_dssp C-----
T ss_pred cccccc
Confidence 999996
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=1.4e-55 Score=320.65 Aligned_cols=157 Identities=79% Similarity=1.201 Sum_probs=89.3
Q ss_pred CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC---CCC
Q 031498 1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD---KST 77 (158)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~---~~~ 77 (158)
|+ +++|+|+|+||+.|.|++.+|.+|++|++|+++.+...+||||+|++.+|++|++||+||+.++.+..... ...
T Consensus 1 ~~-~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 1 MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred CC-CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 44 67999999999999999999999999999999876677999999999999999999999998764322111 235
Q ss_pred cchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhccccc
Q 031498 78 EDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 157 (158)
Q Consensus 78 ~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~ 157 (158)
...+++||++|++++.+.|++|+.|||||+|++|+++||++||++|+|||++|||++|||++|||||||++||+||+|+|
T Consensus 80 ~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~ 159 (160)
T 2p1m_A 80 DDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF 159 (160)
T ss_dssp ---------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 031498 158 E 158 (158)
Q Consensus 158 ~ 158 (158)
|
T Consensus 160 ~ 160 (160)
T 2p1m_A 160 E 160 (160)
T ss_dssp C
T ss_pred C
Confidence 6
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=7.8e-51 Score=295.40 Aligned_cols=151 Identities=60% Similarity=0.986 Sum_probs=133.9
Q ss_pred cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-C----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC--CCCc
Q 031498 6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-A----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD--KSTE 78 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-~----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~--~~~~ 78 (158)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ . ..+||||+|++.+|++|++||++|+.++.+...++ ....
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 489999999999999999999999999999743 2 26899999999999999999999998775433211 2456
Q ss_pred chhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhcccc
Q 031498 79 DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156 (158)
Q Consensus 79 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~ 156 (158)
..+++||++|++++.+++++|+.||+||+|++|+++||+++|++|+|||++|||++|||++||||||+++||+||+|+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 779999999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=6.8e-48 Score=274.81 Aligned_cols=137 Identities=60% Similarity=0.949 Sum_probs=111.9
Q ss_pred cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCC--CCCCcchhch
Q 031498 6 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD--DKSTEDDLKT 83 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~--~~~~~~~~~~ 83 (158)
.|+|+|+||++|.|++.+|.+|++|++|+++.| .++||||+|++.+|++|++||+||+.++.+...+ .......+++
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~ 81 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV 81 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------H
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhH
Confidence 599999999999999999999999999999876 7799999999999999999999999876543221 1245677999
Q ss_pred HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCH
Q 031498 84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSP 143 (158)
Q Consensus 84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ 143 (158)
||++|++++.+.|++|+.|||||+|++|+++||++||++|+|||++|||++|||++||||
T Consensus 82 wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 82 WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.96 E-value=8.3e-30 Score=171.03 Aligned_cols=97 Identities=30% Similarity=0.501 Sum_probs=83.9
Q ss_pred CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC--CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 031498 1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE 78 (158)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~ 78 (158)
|+ +++|+|+|+||++|.|++.+|.+|++|++|+++.. ..++||||+|++.+|++|++||+||+.++.+. ...
T Consensus 1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~-----~~~ 74 (99)
T 1hv2_A 1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS-----EDD 74 (99)
T ss_dssp CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC-----SSC
T ss_pred CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc-----ccc
Confidence 67 77999999999999999999999999999999743 23789999999999999999999999765421 123
Q ss_pred chhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498 79 DDLKTWDADFVKVDQNTLFDLILAANYLNI 108 (158)
Q Consensus 79 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i 108 (158)
..+++| +++++.||+|+.|||||+|
T Consensus 75 ~~i~~w-----~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 75 DEIPEF-----EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp SSCCCC-----CCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCc-----cCCHHHHHHHHHHHHHhCc
Confidence 457777 6899999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.95 E-value=2.8e-28 Score=166.80 Aligned_cols=93 Identities=28% Similarity=0.417 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 031498 3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKST 77 (158)
Q Consensus 3 ~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~ 77 (158)
++++|+|+|+||++|.|++.+|.+|++|++|+++.+. ..+||||+|++.+|++|++||+||+.++..
T Consensus 15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~-------- 86 (112)
T 1vcb_B 15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS-------- 86 (112)
T ss_dssp --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSC--------
T ss_pred CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCC--------
Confidence 4678999999999999999999999999999987542 358999999999999999999999976432
Q ss_pred cchhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498 78 EDDLKTWDADFVKVDQNTLFDLILAANYLNI 108 (158)
Q Consensus 78 ~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i 108 (158)
...+++| +++++.||+||.|||||+|
T Consensus 87 ~~~i~~w-----~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 87 STEIPEF-----PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp SSCCCCC-----CCCHHHHHHHHHHHHHHTC
T ss_pred cCCCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence 2346777 6899999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.95 E-value=2.8e-28 Score=162.73 Aligned_cols=91 Identities=29% Similarity=0.425 Sum_probs=78.9
Q ss_pred CcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498 5 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED 79 (158)
Q Consensus 5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~ 79 (158)
++|+|+|+||++|.|++.+|.+|++|++|+++.|. .++||||+|++.+|++|++||+||+.++.+ ..
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~--------~~ 72 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------ST 72 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSC--------CS
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCC--------cc
Confidence 47999999999999999999999999999997542 358999999999999999999999876432 23
Q ss_pred hhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498 80 DLKTWDADFVKVDQNTLFDLILAANYLNI 108 (158)
Q Consensus 80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i 108 (158)
.+++| +++++.||+|+.|||||+|
T Consensus 73 ~i~~w-----~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 73 EIPEF-----PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCCCC-----CCCTTTHHHHHHHHHHHTC
T ss_pred cCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence 46777 6899999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.93 E-value=5.5e-26 Score=151.87 Aligned_cols=90 Identities=29% Similarity=0.435 Sum_probs=78.2
Q ss_pred cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 031498 6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDD 80 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~ 80 (158)
+|+|+|+||++|.|++.+|.+|++|++|+++.| ...+||||+|++.+|++|++||+||+.++.. ...
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~--------~~~ 74 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------STE 74 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTC--------CSC
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCC--------cCC
Confidence 799999999999999999999999999998754 2678999999999999999999999876532 245
Q ss_pred hchHHHhhccCChHHHHHHHHhhhccCc
Q 031498 81 LKTWDADFVKVDQNTLFDLILAANYLNI 108 (158)
Q Consensus 81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i 108 (158)
+++| +++++.+++|+.||+||+.
T Consensus 75 i~~~-----~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 75 IPEF-----PIAPEIALELLMAANFLDC 97 (97)
T ss_dssp CCCC-----CCCGGGHHHHHHHHHHHTC
T ss_pred CCcC-----cCCHHHHHHHHHHHhhhCC
Confidence 6788 5899999999999999983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.31 E-value=2.4e-12 Score=89.98 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=74.6
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w 84 (158)
.|+|+. +|+.|.+++.+ +..|+++++|+.... ...|.|++++..+++.+++|++...
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~-------------------- 84 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGH-------------------- 84 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSC--------------------
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCC--------------------
Confidence 466765 68999999998 567999999997643 5679999999999999999999853
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCH
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 128 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~ 128 (158)
+.++.+.+.+|+.||++|+|+.|.+.|++++...+.++++
T Consensus 85 ----~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 85 ----LALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp ----CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred ----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 1345677999999999999999999999999998888765
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.28 E-value=3.5e-11 Score=80.54 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=77.5
Q ss_pred cEEEEcCCC---CeEEecHHHH-HHhHHHHHHHHhCC--CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498 6 KITLKSSDG---ETFEVEETVA-LESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED 79 (158)
Q Consensus 6 ~i~l~s~DG---~~f~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~ 79 (158)
.++|+..+| +.|.+++.++ ..|+++++|+.... ....|.+|+++..+++.+++|++...-
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~-------------- 75 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI-------------- 75 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC--------------
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc--------------
Confidence 588888886 9999999995 68999999998542 127899999999999999999998421
Q ss_pred hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 031498 80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADM 122 (158)
Q Consensus 80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~ 122 (158)
.++.+.+.+|+.||++++++.|.+.|.+++...
T Consensus 76 ----------~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 76 ----------DLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp ----------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 245678899999999999999999999999765
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.24 E-value=8.2e-11 Score=80.47 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=77.6
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w 84 (158)
.++|+. +|+.|.+++.+ +..|+++++|+... ...|.+++++..+++.+++|++...-
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~------------------- 87 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATL------------------- 87 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCC-------------------
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCCc-------------------
Confidence 467765 68999999998 57899999999753 56799999999999999999998431
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHh
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 123 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i 123 (158)
.++.+.+.+|+.||++|+++.|.+.|+.++...|
T Consensus 88 -----~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 88 -----QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp -----CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 2456779999999999999999999999997654
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.18 E-value=3e-10 Score=77.32 Aligned_cols=89 Identities=17% Similarity=0.308 Sum_probs=74.3
Q ss_pred cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498 6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL 81 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
.++|+. +|+.|.+++.++ ..|+++++|+.... ....|.+++++..+++.+++|++...
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~----------------- 88 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT----------------- 88 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC-----------------
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC-----------------
Confidence 466765 689999999994 67999999998542 35679999999999999999999742
Q ss_pred chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498 82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119 (158)
Q Consensus 82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i 119 (158)
+.++.+.+.+|+.||++|++++|.+.|.+++
T Consensus 89 -------~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 89 -------LTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp -------CCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 1245678999999999999999999999876
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.18 E-value=2.9e-10 Score=77.05 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=74.0
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecC--CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLP--NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK 82 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~--~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (158)
.++|+. +|+.|.+++.+ +..|++++.|+... ....|.|+ +++..+++.+++|++...
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~------------------ 83 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGT------------------ 83 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSC------------------
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCC------------------
Confidence 466665 58999999999 47899999999865 35566666 999999999999999842
Q ss_pred hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHH
Q 031498 83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120 (158)
Q Consensus 83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia 120 (158)
+.++.+.+.+|+.||++|+++.|.+.|++++.
T Consensus 84 ------~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 84 ------LNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp ------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred ------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 12456789999999999999999999999874
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.18 E-value=8.1e-11 Score=80.32 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=74.7
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w 84 (158)
.++|+. +|+.|.+++.+ +..|++++.|+.... ...|.+++++..+++.+++|++...-
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~------------------- 84 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHL------------------- 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCC-------------------
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCC-------------------
Confidence 466665 68999999998 567999999998653 67899999999999999999998431
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~ 121 (158)
.++.+.+.+|+.||++|+++.|.+.|++++..
T Consensus 85 -----~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 85 -----ALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp -----CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred -----ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 24556789999999999999999999998753
No 15
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.17 E-value=3.5e-10 Score=81.27 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=85.1
Q ss_pred cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498 6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL 81 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
.++|+. +|+.|.+++.++ ..|+++++|+.... ....|.+++++..+++.+++|++...-
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~---------------- 98 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 98 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC----------------
Confidence 467766 689999999984 67999999998642 346899999999999999999998531
Q ss_pred chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 031498 82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK 133 (158)
Q Consensus 82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~ 133 (158)
.++.+.+.+|+.+|++|+++.|.+.|.+++...+...++-++..
T Consensus 99 --------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 99 --------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp --------TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred --------CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23456788999999999999999999999998888777666543
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.16 E-value=2.1e-10 Score=78.23 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=74.6
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w 84 (158)
.++|+. +|+.|.+++.+ +..|+++++|+... ...|.+++++..+++.+++|++...-
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~------------------- 86 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAKL------------------- 86 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSCC-------------------
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCCC-------------------
Confidence 466765 68999999998 46799999999874 56788889999999999999998431
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHH
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia 120 (158)
.++.+.+.+|+.||++|+++.|.+.|+++++
T Consensus 87 -----~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 87 -----SLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp -----CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2456678999999999999999999999874
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.15 E-value=9.3e-11 Score=81.06 Aligned_cols=90 Identities=16% Similarity=0.376 Sum_probs=71.5
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhch
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKT 83 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (158)
.++|+. +|+.|.+++.+ +..|++++.|+... ....|.+| +++..+++.+++|++...
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~------------------- 93 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR------------------- 93 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE-------------------
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc-------------------
Confidence 466765 79999999998 46799999999876 46789998 899999999999999853
Q ss_pred HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498 84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121 (158)
Q Consensus 84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~ 121 (158)
+.++.+.+.+|+.||++|+++.|.+.|++++..
T Consensus 94 -----~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 94 -----LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp -----EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred -----cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 135667789999999999999999999998864
No 18
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.13 E-value=5.3e-10 Score=76.89 Aligned_cols=91 Identities=15% Similarity=0.297 Sum_probs=76.1
Q ss_pred cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC--CCCceec-CCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498 6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC--ADTVIPL-PNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL 81 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl-~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
.++|+. +|+.|.+++.++ ..|+++++|+.... ....|.| ++++..+++.+++|++...
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~----------------- 92 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR----------------- 92 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-----------------
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC-----------------
Confidence 467765 589999999985 68999999998643 2567899 8999999999999999842
Q ss_pred chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498 82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121 (158)
Q Consensus 82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~ 121 (158)
+.++.+.+.+|+.||++|+++.|.+.|..++..
T Consensus 93 -------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 93 -------LNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp -------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 124567899999999999999999999998853
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.10 E-value=2.1e-10 Score=80.28 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=74.0
Q ss_pred cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498 6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL 81 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
.++|+. +|+.|.+++.++ ..|+++++|+.... ....|.+++++..+++.+++|++...-
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~---------------- 89 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 89 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc----------------
Confidence 467765 689999999995 77999999998542 246799999999999999999998531
Q ss_pred chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHH
Q 031498 82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEE 130 (158)
Q Consensus 82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~ee 130 (158)
.++.+.+.+|+.+|++++++.|.+.|+.++...+...++-+
T Consensus 90 --------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~ 130 (145)
T 4eoz_A 90 --------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 130 (145)
T ss_dssp --------TTGGGTHHHHHHHHHHTTCHHHHHHHHCC------------
T ss_pred --------CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 13456788999999999999999999999987776555433
No 20
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.09 E-value=3.8e-10 Score=79.59 Aligned_cols=89 Identities=21% Similarity=0.405 Sum_probs=74.3
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED 79 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~ 79 (158)
.|+|+. +|+.|.+++.+ +..|+++++|+.... ....|.|++++..+++.+++|++...
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~--------------- 112 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ--------------- 112 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC---------------
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC---------------
Confidence 466665 68999999998 467999999998642 35679999999999999999998632
Q ss_pred hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498 80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119 (158)
Q Consensus 80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i 119 (158)
+.++.+.+.+|+.||++|+++.|.+.|++++
T Consensus 113 ---------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 113 ---------IRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp ---------CCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred ---------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 1245678999999999999999999999764
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.09 E-value=3.8e-10 Score=78.86 Aligned_cols=95 Identities=14% Similarity=0.248 Sum_probs=78.2
Q ss_pred cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-CCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498 6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC-ADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK 82 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (158)
.|+|+. +|+.|.+++.++ ..|++++.|+.... ....|.+| +++...++.+++|++...
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~------------------ 98 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK------------------ 98 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC------------------
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC------------------
Confidence 466665 589999999994 67999999998653 23568886 899999999999999842
Q ss_pred hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcC
Q 031498 83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKG 125 (158)
Q Consensus 83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ 125 (158)
+.++.+.+.+|+.||++|+++.|.+.|++++...+..
T Consensus 99 ------~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 99 ------LILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp ------CCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred ------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 1245677999999999999999999999998766543
No 22
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.00 E-value=1.3e-10 Score=79.71 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=73.1
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-CCCceecCC-CCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC-ADTVIPLPN-VTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK 82 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~-~~~~Ipl~~-i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (158)
.++|+. +|+.|.+++.+ +..|+++++|+.... ....|.+++ ++..+++.+++|++...
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~------------------ 94 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK------------------ 94 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE------------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc------------------
Confidence 467775 68999999999 567999999998653 356789998 99999999999998742
Q ss_pred hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHH
Q 031498 83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118 (158)
Q Consensus 83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ 118 (158)
+.++.+.+.+|+.||++|+++.|.+.|+++
T Consensus 95 ------~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 95 ------LLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp ------EEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred ------eEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 135667789999999999999999988754
No 23
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.99 E-value=1.4e-09 Score=83.21 Aligned_cols=100 Identities=19% Similarity=0.324 Sum_probs=76.5
Q ss_pred cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498 6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED 79 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~ 79 (158)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|++++++..+++.+++|++...-
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~-------------- 97 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI-------------- 97 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC--------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC--------------
Confidence 466665 689999999995 56999999997532 345799999999999999999998431
Q ss_pred hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHH
Q 031498 80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEE 130 (158)
Q Consensus 80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~ee 130 (158)
.++.+.+.+|+.||++|+++.|.+.|+.++...+.-.+.-.
T Consensus 98 ----------~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~ 138 (256)
T 3hve_A 98 ----------RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIG 138 (256)
T ss_dssp ----------CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred ----------cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHH
Confidence 24556788999999999999999999998887766555333
No 24
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.98 E-value=1e-09 Score=84.97 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=79.7
Q ss_pred cEEEEcC--CCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecC------CCCHHHHHHHHHHHHHhcccCCCCCCC
Q 031498 6 KITLKSS--DGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLP------NVTSTILSKVIEYCKKHVEAGSGDKKD 73 (158)
Q Consensus 6 ~i~l~s~--DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~------~i~~~~L~~Ii~~~~~~~~~~~~~~~~ 73 (158)
.|+|+.. ||+.|.+++.++ ..|++++.|+.+.. ....|.++ +++..+++.+++|++...-
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~-------- 105 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI-------- 105 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE--------
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc--------
Confidence 4777766 799999999995 57999999997542 34578887 8999999999999998531
Q ss_pred CCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHH
Q 031498 74 DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI 131 (158)
Q Consensus 74 ~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eei 131 (158)
.++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus 106 ----------------~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 106 ----------------RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp ----------------EEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred ----------------ccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 245567899999999999999999999999888877665554
No 25
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.90 E-value=9e-10 Score=75.35 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=70.3
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w 84 (158)
.++|+. +|+.|.+++.+ +..|++++. ....|.+++++..+++.+++|++...
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYtg~-------------------- 84 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYGES-------------------- 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTTCC--------------------
T ss_pred ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcCCC--------------------
Confidence 466665 79999999998 456999874 24578899999999999999998742
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~ 121 (158)
+.++.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus 85 ----~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 85 ----VELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ----EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred ----cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 235778899999999999999999999998754
No 26
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.89 E-value=1.1e-08 Score=80.34 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=83.4
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL 81 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
.++|+. +|+.|.+++.+ +.+|+++++|+.... ....|.|++++..+++.+++|++...-
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~---------------- 238 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 238 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC----------------
Confidence 466666 78999999998 578999999997532 356899999999999999999998421
Q ss_pred chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 031498 82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK 133 (158)
Q Consensus 82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~ 133 (158)
.++.+.+.+|+.||++++++.|...|..++...+...++-++..
T Consensus 239 --------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~ 282 (312)
T 3hqi_A 239 --------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282 (312)
T ss_dssp --------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred --------CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 12347889999999999999999999999988777777655533
No 27
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=75.20 Aligned_cols=89 Identities=16% Similarity=0.274 Sum_probs=72.6
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-CCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC-ADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK 82 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~-~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (158)
.++|+. +|+.|.+++.+ +..|+++++|+.+.. ....|.+| +++...++.+++|++...-
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~----------------- 92 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKL----------------- 92 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEE-----------------
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCc-----------------
Confidence 466665 58999999998 568999999998653 23568886 8999999999999998531
Q ss_pred hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498 83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119 (158)
Q Consensus 83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i 119 (158)
.++.+.+.+|+.||++|+++.|.+.|++++
T Consensus 93 -------~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 93 -------ILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp -------EEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred -------ccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 245667999999999999999999998765
No 28
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.83 E-value=9.6e-09 Score=69.71 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=68.6
Q ss_pred cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498 6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w 84 (158)
.++|+. +|+.|.+++.+ +..|+++++++... ...|.+++++..+++.+++|++...- +
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~~---~--------------- 91 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSKI---V--------------- 91 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSCC---C---------------
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCCc---C---------------
Confidence 466665 68999999998 57899999999764 56899999999999999999987421 0
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHH
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLD 113 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~ 113 (158)
.++.+.+.+|+.||++|+|+.|.+
T Consensus 92 -----~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 92 -----RVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp -----SCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred -----CCCHHHHHHHHHHHHHhCccccCc
Confidence 257788999999999999999875
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=95.83 E-value=0.072 Score=35.01 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhC-------CCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 031498 3 SEKKITLKSSDGETFEVEETVALES--QTIKHMVEDD-------CADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD 73 (158)
Q Consensus 3 ~~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~l~~~-------~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~ 73 (158)
+++.|+|-- .|+.|.+++..+..- ..|..|+... ...+.+-+ +-++..++.|+.|++..+-.-+.
T Consensus 4 ~~~~v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~---- 77 (107)
T 3drz_A 4 VSKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK---- 77 (107)
T ss_dssp -CCEEEEEE-TTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCT----
T ss_pred CCCEEEEEE-CCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCC----
Confidence 345566654 499999999987652 4677777532 12345555 78999999999999985321110
Q ss_pred CCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498 74 DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121 (158)
Q Consensus 74 ~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~ 121 (158)
++. ...++..|.|.+|++|++.|-..|..
T Consensus 78 ----------------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 78 ----------------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp ----------------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 122 24678999999999999999887753
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=88.28 E-value=0.61 Score=34.25 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhCC-------CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC
Q 031498 4 EKKITLKSSDGETFEVEETVALES--QTIKHMVEDDC-------ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD 74 (158)
Q Consensus 4 ~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~l~~~~-------~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~ 74 (158)
++.|+|-- .|+.|.+.+..+..- .+|..|+.... ..+.+-+ +-++..++.|+.|++..+-. .+
T Consensus 11 ~~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~-lP----- 82 (202)
T 3drx_A 11 SKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV-IN----- 82 (202)
T ss_dssp CCEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC-CC-----
T ss_pred CCEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC-CC-----
Confidence 34555543 599999998876542 35666765321 2344555 67899999999999985321 11
Q ss_pred CCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 031498 75 KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADM 122 (158)
Q Consensus 75 ~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~ 122 (158)
+ ++.. ..++..|.|.+|.+|++.|-..+..+
T Consensus 83 --------~------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 83 --------K------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp --------T------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------C------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 0 1222 35889999999999999999888644
No 31
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=85.56 E-value=2.7 Score=32.29 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=69.1
Q ss_pred eecCCCCHHHHHHHHHHHHHhcccCC-CCCCCCCCCcchhchHHHh--hccCChH--HHHHHHHhhhccCchhHHHHHHH
Q 031498 43 IPLPNVTSTILSKVIEYCKKHVEAGS-GDKKDDKSTEDDLKTWDAD--FVKVDQN--TLFDLILAANYLNIKGLLDLTCQ 117 (158)
Q Consensus 43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~--Fl~~~~~--~l~~Ll~AA~~L~i~~L~~~~~~ 117 (158)
..++.-+--.-.-|+.|++-+--... .--.......+.+.+|-.. |-.+..+ ..+..|.|..=-.+.+|+...-+
T Consensus 191 ~Q~~~~d~~~T~NVvAwLYAAilng~~Wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ 270 (306)
T 3tnt_A 191 AQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKE 270 (306)
T ss_dssp CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHH
T ss_pred hhccCccceeehhHHHHHHHHHhcCCeEEeeccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444444455678999998754322 1111123456667888444 5446654 35999999999999999998888
Q ss_pred HHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498 118 TVADMIKGKTPEEIRKTFNIKNDFSPDEEE 147 (158)
Q Consensus 118 ~ia~~i~~ks~eeir~~f~i~~d~t~eee~ 147 (158)
.+.+=+.|++ |--...++++|||+|.-
T Consensus 271 ll~~g~~G~~---IlG~~~leDE~Tp~~V~ 297 (306)
T 3tnt_A 271 LLQNGMNGRT---ILGSTILEDEFTPFDVV 297 (306)
T ss_dssp HHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred HHhcCcCCce---eeccccccccCCHHHHH
Confidence 7777677887 66667788889998753
No 32
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=81.65 E-value=1.7 Score=33.36 Aligned_cols=101 Identities=13% Similarity=0.229 Sum_probs=67.0
Q ss_pred eecCCCCHHHHHHHHHHHHHhcccCCC-CCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498 43 IPLPNVTSTILSKVIEYCKKHVEAGSG-DKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119 (158)
Q Consensus 43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i 119 (158)
..++.-+--.-.-|+.|++-+--+..+ =-.......+.+.+|-.. |-.+.....+++|.|..=.++.+|+...-+ +
T Consensus 191 ~Q~~~~d~~~T~NVvAwLYAAilng~~wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~Laa~TGVsV~~lL~aI~~-L 269 (303)
T 3tlo_A 191 LQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQLLASIQH-L 269 (303)
T ss_dssp CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCCCCCCHHHHHHHHHHHTBCCCCCSGGGHHHHHHHTCCHHHHHHHHHH-H
T ss_pred hcccCccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhcCccccccchHHHHHHHHhCCcHHHHHHHHHH-H
Confidence 344444444556789999988654321 111223456677888443 555777788999999999999999887664 5
Q ss_pred HHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEE 147 (158)
Q Consensus 120 a~~i~~ks~eeir~~f~i~~d~t~eee~ 147 (158)
+.-+.|++ |--...++++|||+|.-
T Consensus 270 ~~g~~G~~---IlG~~~leDE~Tp~~V~ 294 (303)
T 3tlo_A 270 HEGFGGKN---ILGYSSLCDEFTLAEVV 294 (303)
T ss_dssp TTCCTTCC---BTTBSSCCCCCCHHHHH
T ss_pred hcCCCCce---ecccccccccCCHHHHH
Confidence 55555555 55566688889998754
No 33
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}
Probab=80.95 E-value=2.9 Score=32.01 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=67.2
Q ss_pred eecCCCCHHHHHHHHHHHHHhcccCC-CCCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498 43 IPLPNVTSTILSKVIEYCKKHVEAGS-GDKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119 (158)
Q Consensus 43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i 119 (158)
..++..+.-.-..|+.|++-+--... .-........+.+.+|-.. |-++.....++.|.|..=..+.+|+...-+.
T Consensus 193 ~Q~~~~d~~~T~NVvA~LYAAilng~~Wf~~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~L- 271 (302)
T 3d23_B 193 VQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADLVLDALASMTGVSIETLLAAIKRL- 271 (302)
T ss_dssp CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHSCCHHHHHHHHHHH-
T ss_pred hhccCccceeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHHHHHHHHhCCcHHHHHHHHHHH-
Confidence 44544455556779999998854432 1111223456677888444 5557777889999999999999998765444
Q ss_pred HHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEE 147 (158)
Q Consensus 120 a~~i~~ks~eeir~~f~i~~d~t~eee~ 147 (158)
+.-+.||+ |--...++++|||++--
T Consensus 272 ~~gf~G~~---IlG~~~leDE~Tp~~V~ 296 (302)
T 3d23_B 272 YMGFQGRQ---ILGSCTFEDELAPSDVY 296 (302)
T ss_dssp HTCCTTCC---BTTBSSCCCSSCHHHHH
T ss_pred hcCCCCce---eeccccccccCCHHHHH
Confidence 55455555 45556688889999754
No 34
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=80.02 E-value=0.86 Score=30.26 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhCC----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC
Q 031498 1 MSSEKKITLKSSDGETFEVEETVALES--QTIKHMVEDDC----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD 74 (158)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~l~~~~----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~ 74 (158)
|++++.|+|--. |+.|..++..+..- ..|..|+.... ..+.+-+ +-++..++.|+.|++..+-.-+.
T Consensus 1 m~~~~~V~LNVG-G~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~----- 73 (115)
T 3kvt_A 1 MDAENRVIINVG-GIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPT----- 73 (115)
T ss_dssp ---CCEEEEEET-TEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCS-----
T ss_pred CCCCCEEEEEEC-CEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCC-----
Confidence 887888887654 99999999887542 23444443221 2445555 67899999999999985321111
Q ss_pred CCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHH-HHHHH
Q 031498 75 KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLL-DLTCQ 117 (158)
Q Consensus 75 ~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~-~~~~~ 117 (158)
++. ...++..|.|.+|.++. +-||.
T Consensus 74 ---------------~~~---~~~~~~Ea~fy~i~~~~l~~CC~ 99 (115)
T 3kvt_A 74 ---------------DVC---GPLFEEELEFWGLDSNQVEPCCW 99 (115)
T ss_dssp ---------------SSC---HHHHHHHHHHHTCCGGGBCGGGS
T ss_pred ---------------ccc---HHHHHHHHHHhCCChHHHHHHHH
Confidence 122 34678889999998764 33554
No 35
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=70.94 E-value=8.2 Score=29.65 Aligned_cols=100 Identities=11% Similarity=0.208 Sum_probs=65.8
Q ss_pred eecCCCCHHHHHHHHHHHHHhcccCC------CCC-CCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHH
Q 031498 43 IPLPNVTSTILSKVIEYCKKHVEAGS------GDK-KDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLD 113 (158)
Q Consensus 43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~------~~~-~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~ 113 (158)
..++..+--.-.-|+.|++-+--... +-- ......-+.+.+|-.. |-++..+..++.|.|..=-.+.+|+.
T Consensus 191 ~Q~~~~~~~~T~NVvA~LYAAllng~~~~~~~~~Wl~~~~~s~e~fN~WA~~ngft~~~~~~~~~~Laa~TGVsVe~lL~ 270 (309)
T 2q6f_A 191 AQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKWLESTTVSIEDYNRWASDNGFTPFSTSTAITKLSAITGVDVCKLLR 270 (309)
T ss_dssp CCCCCCCCBCHHHHHHHHHHHHHHC-------CTTSCSSCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHTCCHHHHHH
T ss_pred hhccCcceeeehhHHHHHHHHHHcCcccccccccccccceecHHHHHHHHHhCCCcccchhhHHHHHHHHhCCcHHHHHH
Confidence 34544444555678999988754321 000 1122455667888444 55577789999999999999999987
Q ss_pred HHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHH
Q 031498 114 LTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEE 146 (158)
Q Consensus 114 ~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee 146 (158)
..- .++.-+.|++ |--...++++|||+|-
T Consensus 271 aI~-~L~~gf~G~~---IlG~~~leDE~Tp~~V 299 (309)
T 2q6f_A 271 TIM-VKSAQWGSDP---ILGQYNFEDELTPESV 299 (309)
T ss_dssp HHH-HHHHCCCSCC---BTTBSSCCCSCCHHHH
T ss_pred HHH-HHhcCCCCce---ecccccccccCCHHHH
Confidence 665 5666556666 4445557788999874
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=69.00 E-value=9.5 Score=24.46 Aligned_cols=35 Identities=17% Similarity=0.549 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 031498 117 QTVADMIKGKTPEEIRKTFN------IK-NDFSPDEEEEVRR 151 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~------i~-~d~t~eee~~i~~ 151 (158)
..||..+.|+|+.+.|..+. +. ..+|+||.+.|.+
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 46788888999999998653 33 3599999887765
No 37
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=68.71 E-value=4.4 Score=27.11 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=55.5
Q ss_pred cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-------CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 031498 6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-------ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE 78 (158)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-------~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~ 78 (158)
.|+| --.|+.|.+.+..+..-+ ..+|...+ ..+.+-+ +=++..++.|+.|++..+-. .+
T Consensus 14 ~V~L-NVGG~~F~t~~~TL~~~p--~S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~-~p--------- 79 (124)
T 1s1g_A 14 LIVL-NVSGRRFQTWRTTLERYP--DTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLH-YP--------- 79 (124)
T ss_dssp EEEE-EETTEEEEEEHHHHTTST--TSSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBC-CC---------
T ss_pred EEEE-EeCCEEEEEeHHHHhcCC--CceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCC-CC---------
Confidence 4443 445999999998765321 01111111 2445656 66999999999999985321 11
Q ss_pred chhchHHHhhccCChHHHHHHHHhhhccCchhH-HHHHHHH
Q 031498 79 DDLKTWDADFVKVDQNTLFDLILAANYLNIKGL-LDLTCQT 118 (158)
Q Consensus 79 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L-~~~~~~~ 118 (158)
. ++ .+..|+..|.|.+|.+| ++.||..
T Consensus 80 ----~------~~---~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 80 ----R------YE---CISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp ----T------TS---CHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred ----C------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 0 12 25778999999999998 4888864
No 38
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=66.85 E-value=6.2 Score=30.21 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=65.7
Q ss_pred eecCCCCHHHHHHHHHHHHHhcccCCC-CCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498 43 IPLPNVTSTILSKVIEYCKKHVEAGSG-DKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119 (158)
Q Consensus 43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i 119 (158)
..++..+.-.-..|+.|++-+--...+ =.......-+.+.+|-.. |-++.....++.|.|..=-.+.+|+...-+.
T Consensus 190 ~Q~~~~~~~~T~NVvA~LYAAilng~~wfl~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~L- 268 (302)
T 1lvo_A 190 MQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRL- 268 (302)
T ss_dssp CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHTTTTBCCCCCSGGGHHHHHHHCCCHHHHHHHHHHH-
T ss_pred hhccCcceeeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHhHHHHHHhCCcHHHHHHHHHHH-
Confidence 345444555567799999988544321 111123455667788443 5456677799999999999999998765444
Q ss_pred HHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEE 147 (158)
Q Consensus 120 a~~i~~ks~eeir~~f~i~~d~t~eee~ 147 (158)
+.-+.|++ |--...++++|||++--
T Consensus 269 ~~g~~G~~---IlG~~~leDE~Tp~~V~ 293 (302)
T 1lvo_A 269 NKGFGGRT---ILSYGSLCDEFTPTEVI 293 (302)
T ss_dssp TTCCTTCC---BTTBSSCCCCSCHHHHH
T ss_pred hcCCCCce---ecccccccccCCHHHHH
Confidence 44445555 45556688889999753
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=65.26 E-value=7.6 Score=24.72 Aligned_cols=35 Identities=17% Similarity=0.493 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 031498 117 QTVADMIKGKTPEEIRKTFN------IK-NDFSPDEEEEVRR 151 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~------i~-~d~t~eee~~i~~ 151 (158)
..||..+.|+|+.+.|..+. +. ..+|+||.+.|.+
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 46778888999999998653 23 3599999887765
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=64.13 E-value=11 Score=24.87 Aligned_cols=36 Identities=17% Similarity=0.470 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 031498 116 CQTVADMIKGKTPEEIRKTFN------IK-NDFSPDEEEEVRR 151 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~------i~-~d~t~eee~~i~~ 151 (158)
=..||..+.|+|..++|..+. +. ..+|+||.+.|.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 356788889999999998663 33 3599999887765
No 41
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=59.04 E-value=14 Score=27.57 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=49.6
Q ss_pred HHhhcc--CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc---------CCCHHHHHhHcCCCCCCCHHHHHHHHHhc
Q 031498 85 DADFVK--VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK---------GKTPEEIRKTFNIKNDFSPDEEEEVRREN 153 (158)
Q Consensus 85 d~~Fl~--~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~---------~ks~eeir~~f~i~~d~t~eee~~i~~e~ 153 (158)
-.+|+. ++.++.+.++..|...+.+.|.+.|..+++..+. .-+.+++.+++.=.+--.+.|++-.+-=-
T Consensus 131 c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~ 210 (279)
T 3i3n_A 131 CGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVL 210 (279)
T ss_dssp HHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHH
Confidence 334443 7888999999999999999999999999875543 23688888888743222233444444434
Q ss_pred ccc
Q 031498 154 QWA 156 (158)
Q Consensus 154 ~w~ 156 (158)
.|+
T Consensus 211 ~W~ 213 (279)
T 3i3n_A 211 KWV 213 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 454
No 42
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.27 E-value=7.9 Score=24.67 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=37.0
Q ss_pred CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc---------CCCHHHHHhHcC
Q 031498 91 VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK---------GKTPEEIRKTFN 136 (158)
Q Consensus 91 ~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~---------~ks~eeir~~f~ 136 (158)
++.++.++++..|..++.+.|.+.|-+++...+. .-+.+++..++.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 7889999999999999999999999999875442 235666666665
No 43
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=57.13 E-value=8.4 Score=26.24 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=34.0
Q ss_pred hHHHhhcc--CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc
Q 031498 83 TWDADFVK--VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 124 (158)
Q Consensus 83 ~wd~~Fl~--~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~ 124 (158)
..-.+|+. ++.+.+++++..|...+.+.|.+.|.++|+..+.
T Consensus 122 ~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 122 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp HHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33344543 7888999999999999999999999999987654
No 44
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=56.71 E-value=15 Score=24.29 Aligned_cols=36 Identities=11% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCHHHHHhHcC------CCC-CCCHHHHHHHHH
Q 031498 116 CQTVADMIKGKTPEEIRKTFN------IKN-DFSPDEEEEVRR 151 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~------i~~-d~t~eee~~i~~ 151 (158)
=..||..+.|+|+.+.|..+. +.. .+|+||.+.|.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 466788888999999998643 333 499999887765
No 45
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=56.43 E-value=7.4 Score=26.59 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=56.1
Q ss_pred CcEEEEcCCCCeEEecHHHHHHhH--HHHHHHHhC---CCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498 5 KKITLKSSDGETFEVEETVALESQ--TIKHMVEDD---CADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED 79 (158)
Q Consensus 5 ~~i~l~s~DG~~f~v~~~~a~~S~--~l~~~l~~~---~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~ 79 (158)
..|+| --.|+.|.+.+..+..-+ +|...-... ...+.+-+ +=++..++.|+.|++..+-.-+
T Consensus 35 ~~V~L-NVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p----------- 101 (140)
T 2nz0_B 35 ELIVL-NVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYP----------- 101 (140)
T ss_dssp CEEEE-EETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCC-----------
T ss_pred CEEEE-EECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCC-----------
Confidence 34444 445999999998865421 221100000 12455666 6799999999999998532211
Q ss_pred hhchHHHhhccCChHHHHHHHHhhhccCchhH-HHHHHHH
Q 031498 80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGL-LDLTCQT 118 (158)
Q Consensus 80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L-~~~~~~~ 118 (158)
. ++ .+..|...|.|.+|..| ++.||..
T Consensus 102 ---~------~~---~~~~l~eEa~fy~i~~l~l~~CC~~ 129 (140)
T 2nz0_B 102 ---R------YE---CISAYDDELAFYGILPEIIGDCCYE 129 (140)
T ss_dssp ---T------TS---CHHHHHHHHHHHTCCGGGBCTTTHH
T ss_pred ---C------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 0 12 26778999999999998 5677754
No 46
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=56.42 E-value=2.9 Score=20.06 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=9.7
Q ss_pred HHHHHHhhhccC
Q 031498 96 LFDLILAANYLN 107 (158)
Q Consensus 96 l~~Ll~AA~~L~ 107 (158)
+.-||.||.||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456899999986
No 47
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=54.64 E-value=6.8 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.613 Sum_probs=25.4
Q ss_pred HHHHHhcCCCHHHHHhHc------CCCC-CCCHHHHHHHHH
Q 031498 118 TVADMIKGKTPEEIRKTF------NIKN-DFSPDEEEEVRR 151 (158)
Q Consensus 118 ~ia~~i~~ks~eeir~~f------~i~~-d~t~eee~~i~~ 151 (158)
.||..+.|+|+.+.|..+ ++.. .+|+||.+.|.+
T Consensus 27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 456667789999998866 4443 499999887765
No 48
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=53.93 E-value=26 Score=22.57 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=40.4
Q ss_pred CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCC--CHHHHHhHcCCCC
Q 031498 91 VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK--TPEEIRKTFNIKN 139 (158)
Q Consensus 91 ~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~k--s~eeir~~f~i~~ 139 (158)
++.+..-.|......|..+.+.....+.+++.-.|+ |.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 466666667777777888999999999888888886 8999999999874
No 49
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=53.92 E-value=8.9 Score=23.28 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56788889999999987553
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=53.85 E-value=9.5 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
.++|..+.+||++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45888889999999999884
No 51
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=53.79 E-value=9.4 Score=22.96 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=13.5
Q ss_pred HHHHHhcCCCHHHHHhHcC
Q 031498 118 TVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 118 ~ia~~i~~ks~eeir~~f~ 136 (158)
.||..+ |+|++|+++.+.
T Consensus 36 ~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 36 KIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHH
Confidence 455555 899999998764
No 52
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=51.66 E-value=7.4 Score=25.09 Aligned_cols=81 Identities=7% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCCeEEecHHHHHHhH--HHHHHHHhC----CCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchHHH
Q 031498 13 DGETFEVEETVALESQ--TIKHMVEDD----CADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDA 86 (158)
Q Consensus 13 DG~~f~v~~~~a~~S~--~l~~~l~~~----~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 86 (158)
.|+.|.+++..+..-+ .|... ... ...+.+-+ +=++..++.|+.|++..+-. .+ +
T Consensus 7 GG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~-~p-------------~--- 67 (105)
T 1nn7_A 7 SGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLH-YP-------------R--- 67 (105)
T ss_dssp TTEEEEECHHHHHTSCSSSTTSG-GGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBC-CC-------------T---
T ss_pred CCEEEEEeHHHHhcCCCcccccc-CCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCC-CC-------------C---
Confidence 5899999998765421 22221 100 02345555 56899999999999985321 11 0
Q ss_pred hhccCChHHHHHHHHhhhccCchhH-HHHHHHH
Q 031498 87 DFVKVDQNTLFDLILAANYLNIKGL-LDLTCQT 118 (158)
Q Consensus 87 ~Fl~~~~~~l~~Ll~AA~~L~i~~L-~~~~~~~ 118 (158)
++ .+-.+...|.|.+|++| ++.||..
T Consensus 68 ---~~---~~~~l~~Ea~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 68 ---HE---CISAYDEELAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp ---TS---CHHHHHHHHHHHTCCSCCBCHHHHH
T ss_pred ---Cc---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12 25678999999999998 4777754
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=51.03 E-value=3.8 Score=25.00 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=30.2
Q ss_pred CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCC
Q 031498 91 VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 139 (158)
Q Consensus 91 ~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~ 139 (158)
-..+.+|+-..|..--+-+.-. ..||..+-|||++|+++.+.++.
T Consensus 25 ~eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 25 FSENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp TTHHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC---
T ss_pred HHHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHhh
Confidence 4567778777776654444333 35777778999999999988753
No 54
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=49.04 E-value=62 Score=22.21 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=35.9
Q ss_pred ChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCC-CCCHHHHHHHHH
Q 031498 92 DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN-DFSPDEEEEVRR 151 (158)
Q Consensus 92 ~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~-d~t~eee~~i~~ 151 (158)
+.+.+-++..+-.-+ +|-..-...|+++ .-.|++|+|.++--.. -+|+|+.++|-.
T Consensus 86 ~~e~~~~l~e~L~~~---~L~~~E~a~L~NL-~P~t~dEar~lipsl~~r~sdEeLe~ILd 142 (152)
T 2c35_A 86 NRETIASVRSLLLQK---KLHKFELACLANL-CPETAEESKALIPSLEGRFEDEELQQILD 142 (152)
T ss_dssp SHHHHHHHHHHHHTS---SCCHHHHHHHHHH-CCSSHHHHHHHCGGGTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc---CCCHHHHHHhccC-CCCCHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 455544444332222 3666666666664 5679999998876554 389998888755
No 55
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=48.24 E-value=15 Score=26.97 Aligned_cols=65 Identities=8% Similarity=0.184 Sum_probs=43.7
Q ss_pred CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc---------CCCHHHHHhHcCCCCCCC-HHHHHHHHHhcccc
Q 031498 91 VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK---------GKTPEEIRKTFNIKNDFS-PDEEEEVRRENQWA 156 (158)
Q Consensus 91 ~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~---------~ks~eeir~~f~i~~d~t-~eee~~i~~e~~w~ 156 (158)
++.++.++++..|...+.+.|.+.|..+++..+. .-+.+++..++.=. ++. +.|++-.+-=-.|+
T Consensus 131 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d-~L~v~~E~~v~~av~~W~ 205 (256)
T 3hve_A 131 IAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLE-KLNVGNERYVFEAVIRWI 205 (256)
T ss_dssp CCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC--------CTTHHHHTTTC
T ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHccC-CCCCCCHHHHHHHHHHHH
Confidence 6778899999999999999999999999876553 33577777776632 233 33444444445665
No 56
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=45.84 E-value=19 Score=22.98 Aligned_cols=81 Identities=6% Similarity=-0.016 Sum_probs=51.1
Q ss_pred CCCCeEEecHHHHHH--hHHHHHHHHhC----CCCCceecCCCCHHHHHHHHHHHHH-hcccCCCCCCCCCCCcchhchH
Q 031498 12 SDGETFEVEETVALE--SQTIKHMVEDD----CADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTW 84 (158)
Q Consensus 12 ~DG~~f~v~~~~a~~--S~~l~~~l~~~----~~~~~Ipl~~i~~~~L~~Ii~~~~~-~~~~~~~~~~~~~~~~~~~~~w 84 (158)
-.|+.|..++..+.. ...|..++... ...+.+-+ +=++..++.|+.|++. .+-.-+.
T Consensus 7 VGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~--------------- 70 (100)
T 1t1d_A 7 VSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPV--------------- 70 (100)
T ss_dssp ETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCT---------------
T ss_pred ECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCC---------------
Confidence 358999999987643 22344444321 13455656 6689999999999997 3321111
Q ss_pred HHhhccCChHHHHHHHHhhhccCchhHHHHHH
Q 031498 85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTC 116 (158)
Q Consensus 85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~ 116 (158)
++ .+..+...|.|.+|.+++--.|
T Consensus 71 -----~~---~~~~~~~Ea~fy~i~~~~~~~~ 94 (100)
T 1t1d_A 71 -----NV---PLDVFSEEIKFYELGENAFERY 94 (100)
T ss_dssp -----TS---CHHHHHHHHHHTTCCHHHHHHH
T ss_pred -----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 12 2357888899999988764444
No 57
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=45.61 E-value=26 Score=19.08 Aligned_cols=35 Identities=20% Similarity=0.526 Sum_probs=25.9
Q ss_pred HHHHhcCC-CHHHHHhHcCCCCCCCHHHHHHHHHhccc
Q 031498 119 VADMIKGK-TPEEIRKTFNIKNDFSPDEEEEVRRENQW 155 (158)
Q Consensus 119 ia~~i~~k-s~eeir~~f~i~~d~t~eee~~i~~e~~w 155 (158)
.-.+..|. +.++||+.-+- .++|.+|-.+|. +|+|
T Consensus 11 ~D~W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I~-~ypw 46 (51)
T 2xf7_A 11 LDSWLDGTASEELLRVAVNA-GDLTQEEADKIM-SYPW 46 (51)
T ss_dssp HHHHHHTCCCHHHHHHHHHH-TSSCHHHHHHHH-TSCT
T ss_pred HHHHhcchhhHHHHHHHHhc-CcccHHHHHHHH-hCcc
Confidence 34566774 78899987764 478999988884 5777
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=43.39 E-value=15 Score=23.29 Aligned_cols=20 Identities=40% Similarity=0.845 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+-|+|++|+|..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56888889999999998765
No 59
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=43.32 E-value=23 Score=24.28 Aligned_cols=35 Identities=17% Similarity=0.493 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 031498 117 QTVADMIKGKTPEEIRKTFN------IK-NDFSPDEEEEVRR 151 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~------i~-~d~t~eee~~i~~ 151 (158)
..||..+.|+|..++|..+. +. ..+|+||.+.|.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 56788889999999998653 33 3499999887765
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=42.86 E-value=26 Score=22.21 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=14.2
Q ss_pred HHHHHh-----cCCCHHHHHhHc
Q 031498 118 TVADMI-----KGKTPEEIRKTF 135 (158)
Q Consensus 118 ~ia~~i-----~~ks~eeir~~f 135 (158)
.|+++. .++|+++|+..|
T Consensus 54 vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 54 VIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eehhhhccCCCCCCCHHHHHHHH
Confidence 577887 478999998865
No 61
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.54 E-value=19 Score=20.44 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+.|+|+.|+|..|.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 56788889999999998653
No 62
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=40.95 E-value=27 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=25.3
Q ss_pred HHHhhhccCchhHHHHH-HHHHHHHhcCCCHHHHHhHc
Q 031498 99 LILAANYLNIKGLLDLT-CQTVADMIKGKTPEEIRKTF 135 (158)
Q Consensus 99 Ll~AA~~L~i~~L~~~~-~~~ia~~i~~ks~eeir~~f 135 (158)
.+..+.|-+-=.-...+ +-.++++++|||++|.+++.
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 53 TIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45555555555444444 45678999999999988865
No 63
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=40.32 E-value=25 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=25.8
Q ss_pred HHHhhhccCchhHHH-HHHHHHHHHhcCCCHHHHHhHcC
Q 031498 99 LILAANYLNIKGLLD-LTCQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 99 Ll~AA~~L~i~~L~~-~~~~~ia~~i~~ks~eeir~~f~ 136 (158)
.+..+.|-.-=.-.. .++-.++++++|||++|.+++.+
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 455566655554444 44566789999999999987643
No 64
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=39.22 E-value=29 Score=23.67 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.4
Q ss_pred HHHhhhccCchhHHHHH-HHHHHHHhcCCCHHHHHhHcC
Q 031498 99 LILAANYLNIKGLLDLT-CQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 99 Ll~AA~~L~i~~L~~~~-~~~ia~~i~~ks~eeir~~f~ 136 (158)
.+..+.|-+-=.-...+ +-.++++++|||++|.+++.+
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 45566666555444444 456789999999999988753
No 65
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=44.93 E-value=6.5 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCHHHHHhHcC
Q 031498 115 TCQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 115 ~~~~ia~~i~~ks~eeir~~f~ 136 (158)
+-++||..+ +||++|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 346778888 899999988775
No 66
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=36.87 E-value=50 Score=22.83 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHh--------HcCCCCCCCHH
Q 031498 111 LLDLTCQTVADMIKGKTPEEIRK--------TFNIKNDFSPD 144 (158)
Q Consensus 111 L~~~~~~~ia~~i~~ks~eeir~--------~f~i~~d~t~e 144 (158)
+++-.+..+...++|+|++||.. .+|+..-+||-
T Consensus 87 IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 87 IVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 45555666777779999999965 56787778875
No 67
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.80 E-value=22 Score=20.29 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+.++|+.+++.++.
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 45678889999999988764
No 68
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.76 E-value=11 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 031498 116 CQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~ 136 (158)
=..||..+-|+|+.|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 356888889999999998764
No 69
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.36 E-value=81 Score=19.92 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHH-HHHHHHHhc-
Q 031498 47 NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLT-CQTVADMIK- 124 (158)
Q Consensus 47 ~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~-~~~ia~~i~- 124 (158)
.+....+.+|++|+..|...+. .+.++ .+-+.++...|..++... -+....++... ......++.
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~-----------~~~~l-A~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL~~ 69 (120)
T 3mkl_A 3 ALQPNMRTRVCTVINNNIAHEW-----------TLARI-ASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVI 69 (120)
T ss_dssp --CCCHHHHHHHHHHTSTTSCC-----------CHHHH-HHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHHHhccCCC-----------CHHHH-HHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHc
Confidence 3456788999999999865432 22333 222456777777777652 22222222222 222333333
Q ss_pred -CCCHHHHHhHcCCCC
Q 031498 125 -GKTPEEIRKTFNIKN 139 (158)
Q Consensus 125 -~ks~eeir~~f~i~~ 139 (158)
+.|+.+|-..+|..+
T Consensus 70 ~~~si~eIA~~~Gf~~ 85 (120)
T 3mkl_A 70 HGFSIKRVAVSCGYHS 85 (120)
T ss_dssp TTCCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCCCC
Confidence 457777766666553
No 70
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=36.34 E-value=39 Score=23.39 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHHhhhccCchhHHHHH-HHHHHHHhcCCCHHHHHhHcC
Q 031498 99 LILAANYLNIKGLLDLT-CQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 99 Ll~AA~~L~i~~L~~~~-~~~ia~~i~~ks~eeir~~f~ 136 (158)
.+..+.|-.-=.-...+ +-.++++++|||++|.+++.+
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55566666555444444 455789999999999988654
No 71
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=35.82 E-value=27 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcC
Q 031498 92 DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 92 ~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~ 136 (158)
..++-.-|+.|-.-.+ . -=..||..+.++|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 4444455555555555 2 2366788888999999999665
No 72
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.79 E-value=26 Score=20.72 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCHHHHHhHc
Q 031498 116 CQTVADMIKGKTPEEIRKTF 135 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f 135 (158)
=..||..+.|+|..|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 45678888999999999876
No 73
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=35.50 E-value=37 Score=24.97 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHhHcCCCCC-CCHHHHHHHH
Q 031498 110 GLLDLTCQTVADMIKGKTPEEIRKTFNIKND-FSPDEEEEVR 150 (158)
Q Consensus 110 ~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d-~t~eee~~i~ 150 (158)
.|+-.+|-+||.++.+..+-.++.+..+.+. +|.+|..+.+
T Consensus 95 qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 95 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 5888899999999987544445555666654 8888755544
No 74
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=34.43 E-value=28 Score=20.50 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=10.7
Q ss_pred CCCCCcEEEEcCCCCeEEe
Q 031498 1 MSSEKKITLKSSDGETFEV 19 (158)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v 19 (158)
|||+ .+.+.+.||+.+..
T Consensus 1 ~sSS-~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSGP-NYVMHTNDGRSIVT 18 (64)
T ss_dssp ---C-CEEEEETTSCEEEC
T ss_pred CCCC-CEEEEeCCCcEEEc
Confidence 6644 56777888887754
No 75
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=33.76 E-value=26 Score=26.41 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=33.9
Q ss_pred hHHHhhcc--CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc
Q 031498 83 TWDADFVK--VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 124 (158)
Q Consensus 83 ~wd~~Fl~--~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~ 124 (158)
..-.+|+. ++.+.+..++..|...+.+.|.+.|..+|+..+.
T Consensus 262 ~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 262 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33444553 6888999999999999999999999999987554
No 76
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=33.60 E-value=32 Score=19.30 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=23.6
Q ss_pred hHHHHHHHHhhhccCchhHHHHHHHHHHHHhc-CCCHHHHHhHc
Q 031498 93 QNTLFDLILAANYLNIKGLLDLTCQTVADMIK-GKTPEEIRKTF 135 (158)
Q Consensus 93 ~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~-~ks~eeir~~f 135 (158)
.++-..|+.|-.-.+... =..||..+. |+|+.+.|..+
T Consensus 14 ~eED~~L~~~v~~~G~~~-----W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 14 ADEELLLIDACETLGLGN-----WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHHHHHHTTTTC-----HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCC-----HHHHHHHHCCCCCHHHHHHHH
Confidence 333334455544444322 356788888 89999999865
No 77
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=33.56 E-value=42 Score=22.82 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHh--------HcCCCCCCCHH
Q 031498 111 LLDLTCQTVADMIKGKTPEEIRK--------TFNIKNDFSPD 144 (158)
Q Consensus 111 L~~~~~~~ia~~i~~ks~eeir~--------~f~i~~d~t~e 144 (158)
+++-.+..+...++|+|++||.. .+|+...+||-
T Consensus 80 IvkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 121 (141)
T 3g0m_A 80 IVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPS 121 (141)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 34444556667779999999965 45777777764
No 78
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=33.15 E-value=1.3e+02 Score=21.45 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHhHcCCCC-CCCHHHHHHHHH
Q 031498 109 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKN-DFSPDEEEEVRR 151 (158)
Q Consensus 109 ~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~-d~t~eee~~i~~ 151 (158)
.+|-..-...||+. .-.|++|+|.++.-.. -+|+|+.++|-.
T Consensus 136 ~kL~efE~aqLaNL-~PeTadEaraLIpSle~rlsdEeLeeILd 178 (187)
T 1y14_A 136 TGLHPFEVAQLGSL-ACDTADEAKTLIPSLNNKISDDELERILK 178 (187)
T ss_dssp TTCCHHHHHHHHHS-CCSSHHHHHHHSGGGTTTSCHHHHHHHHH
T ss_pred cCCCHHHHHHcCcC-CCCCHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 44666666666653 5689999998876554 388999888755
No 79
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=33.02 E-value=71 Score=19.18 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=10.0
Q ss_pred CChHHHHHHHHhhhc
Q 031498 91 VDQNTLFDLILAANY 105 (158)
Q Consensus 91 ~~~~~l~~Ll~AA~~ 105 (158)
++.+.+..+..||++
T Consensus 35 Lt~~el~~f~~AaDH 49 (72)
T 1jw2_A 35 LSDNELAVFYSAADH 49 (72)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 556677777777763
No 80
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.47 E-value=46 Score=16.69 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=13.5
Q ss_pred hcCCCHHHHHhHcCCC
Q 031498 123 IKGKTPEEIRKTFNIK 138 (158)
Q Consensus 123 i~~ks~eeir~~f~i~ 138 (158)
..|.|..+|.+.|||+
T Consensus 19 ~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRS 34 (51)
T ss_dssp HTTCCHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 4688999999999986
No 81
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=31.75 E-value=1e+02 Score=19.73 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHH
Q 031498 111 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRR 151 (158)
Q Consensus 111 L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~ 151 (158)
|-+.....||+. .=.|++|+|..+.-... +|+.++|-.
T Consensus 64 l~e~~a~~I~nl-~P~t~dElraii~~~~~--~eel~~ILd 101 (107)
T 1go3_F 64 IDEKTAVKIADI-LPEDLDDLRAIYYKREL--PENAEEILE 101 (107)
T ss_dssp CCHHHHHHHHHH-CCCSHHHHHHHSTTSCC--CTTHHHHHH
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHhcccC--cHHHHHHHH
Confidence 566666677664 56899999999887653 777776644
No 82
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=31.28 E-value=50 Score=26.81 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 031498 115 TCQTVADMIKGKTPEEIRKTFNIKNDF 141 (158)
Q Consensus 115 ~~~~ia~~i~~ks~eeir~~f~i~~d~ 141 (158)
+-+-|..+|.-||||||-+.+|+++|-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDE 190 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccc
Confidence 344577889999999999999999884
No 83
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=30.80 E-value=25 Score=21.70 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=18.2
Q ss_pred ChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCC-----CHHHHHhHcCCC
Q 031498 92 DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK-----TPEEIRKTFNIK 138 (158)
Q Consensus 92 ~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~k-----s~eeir~~f~i~ 138 (158)
+.+..-.+......|..+.+.+...+.+++.-.|+ +.+|+++.+|+.
T Consensus 39 s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 39 SADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 33444445555566767777777667676555565 458899999874
No 84
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=30.53 E-value=68 Score=25.75 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHc
Q 031498 93 QNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 135 (158)
Q Consensus 93 ~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f 135 (158)
.+.|-.+..|++.|.+..=...-...+-+....-|+.||.+.+
T Consensus 282 ~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il 324 (419)
T 2f6h_X 282 TECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLI 324 (419)
T ss_dssp HHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHH
Confidence 4567889999999998752222222233444556788887744
No 85
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=30.24 E-value=36 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHhhhccCchhHH-HHHHHHHHHHhcCCCHHHHHhHcC
Q 031498 99 LILAANYLNIKGLL-DLTCQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 99 Ll~AA~~L~i~~L~-~~~~~~ia~~i~~ks~eeir~~f~ 136 (158)
.+..+.|-.-=.-. ..++-.++.+++|||++|.+++.+
T Consensus 52 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 52 VIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp BEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 45555555544333 444566789999999999987654
No 86
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=29.91 E-value=17 Score=28.02 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=34.7
Q ss_pred cEEEEcCCCCeEEe------cHHHHHHhHHHHHHHHhCC----------CCCceecCCCCHHHHHHHHHHHHH
Q 031498 6 KITLKSSDGETFEV------EETVALESQTIKHMVEDDC----------ADTVIPLPNVTSTILSKVIEYCKK 62 (158)
Q Consensus 6 ~i~l~s~DG~~f~v------~~~~a~~S~~l~~~l~~~~----------~~~~Ipl~~i~~~~L~~Ii~~~~~ 62 (158)
..-|+..||++..+ ...+...-..++++.+... ......=..|+.+.|+.|++=..+
T Consensus 104 ~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~ 176 (322)
T 4eo3_A 104 STFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHL 176 (322)
T ss_dssp EEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHHhhhccCCcCccccCHHHHHHHHHHHHh
Confidence 34578899988643 3445555677777765321 111111124789999999987665
No 87
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=29.56 E-value=33 Score=20.01 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHH
Q 031498 1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVE 35 (158)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~ 35 (158)
|++.-.|.+++.+|+.|.++-..-..-.-|+..+.
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~ 35 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVS 35 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHH
Confidence 66666799999999988764332222333444443
No 88
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=29.55 E-value=34 Score=17.02 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=7.2
Q ss_pred CHHHHHHHHHh
Q 031498 142 SPDEEEEVRRE 152 (158)
Q Consensus 142 t~eee~~i~~e 152 (158)
||||..++++|
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67777666655
No 89
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.45 E-value=39 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+.|+|..++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 32 TKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 66788889999999998653
No 90
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=29.00 E-value=25 Score=22.03 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=15.8
Q ss_pred CCCHHHHHhHcCCCCCC
Q 031498 125 GKTPEEIRKTFNIKNDF 141 (158)
Q Consensus 125 ~ks~eeir~~f~i~~d~ 141 (158)
|.|++|=|..||++.|+
T Consensus 43 gltpeeYR~kwGlp~dy 59 (87)
T 2jsp_A 43 SMTPEEYREKWDLPVDY 59 (87)
T ss_dssp CSCHHHHHHHTTCGGGC
T ss_pred CCCHHHHHHHhCCCCCC
Confidence 89999999999999874
No 91
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=28.82 E-value=38 Score=23.40 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHhhhccCchhHHH-HHHHHHHHHhcCCCHHHHHhH
Q 031498 99 LILAANYLNIKGLLD-LTCQTVADMIKGKTPEEIRKT 134 (158)
Q Consensus 99 Ll~AA~~L~i~~L~~-~~~~~ia~~i~~ks~eeir~~ 134 (158)
.+..+.|-.-=.-.. .++-.++.+++|||++|.+++
T Consensus 47 ~I~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i 83 (153)
T 4eb5_C 47 RIEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKI 83 (153)
T ss_dssp BEEEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTC
T ss_pred eEEEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 455555555444444 445667899999999988654
No 92
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.26 E-value=56 Score=18.78 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.7
Q ss_pred HhcCCCHHHHHhHcCCC
Q 031498 122 MIKGKTPEEIRKTFNIK 138 (158)
Q Consensus 122 ~i~~ks~eeir~~f~i~ 138 (158)
.+.|+|..||.+.+|++
T Consensus 28 ~~~g~s~~eIA~~l~is 44 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDIS 44 (79)
T ss_dssp HTTTCCHHHHHHHTTSC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 45788888888888885
No 93
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=28.10 E-value=49 Score=19.18 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHH
Q 031498 108 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRR 151 (158)
Q Consensus 108 i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~ 151 (158)
++.|.+..-+++ .|+....|-+...----|+|+|.+.|.+
T Consensus 7 ~EYLrNVl~~ym----~g~~~~~m~kaI~avL~Fs~~e~q~il~ 46 (60)
T 1upt_B 7 FEYLRKVLFEYM----MGRETKTMAKVITTVLKFPDDQTQKILE 46 (60)
T ss_dssp HHHHHHHHHHHH----TTSSHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HcccHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455666666655 4665555555444334478888877755
No 94
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=28.08 E-value=31 Score=18.68 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=15.6
Q ss_pred HHHHHHhcCCCHHHHHhHc
Q 031498 117 QTVADMIKGKTPEEIRKTF 135 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f 135 (158)
..||..+.|+|+.++|..+
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw 45 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRW 45 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 5677788899999998865
No 95
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=27.23 E-value=43 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCHHHHHhHcCC
Q 031498 116 CQTVADMIKGKTPEEIRKTFNI 137 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~i 137 (158)
+..+|+.|+|+++++-..++..
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~f 34 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLEF 34 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 3568999999999998887763
No 96
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=27.14 E-value=32 Score=22.32 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCHHHHHhHcCCCCCCCHHHHHHHHHhc
Q 031498 126 KTPEEIRKTFNIKNDFSPDEEEEVRREN 153 (158)
Q Consensus 126 ks~eeir~~f~i~~d~t~eee~~i~~e~ 153 (158)
..++.+|....|-+-||||+.+.+++.+
T Consensus 76 ~~v~~~r~~~qmy~lLTPEQk~q~~~~~ 103 (108)
T 3o39_A 76 NMLAHMETQNKIYNILTPEQKKQFNANF 103 (108)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4577777766666669999999988754
No 97
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=27.04 E-value=82 Score=17.10 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCHHHHHh
Q 031498 115 TCQTVADMIKGKTPEEIRK 133 (158)
Q Consensus 115 ~~~~ia~~i~~ks~eeir~ 133 (158)
.+++++.+|+.+.|++++.
T Consensus 9 kSk~L~~Ll~s~~P~Dlq~ 27 (45)
T 1j2j_B 9 KSKMLARLLKSSHPEDLRA 27 (45)
T ss_dssp HHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHH
Confidence 4678899999999988765
No 98
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=26.87 E-value=46 Score=19.88 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 031498 116 CQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~ 136 (158)
=..||..+ |+|..++|..|.
T Consensus 45 W~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 45 WATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 35678888 999999999875
No 99
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=26.65 E-value=37 Score=26.28 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=32.5
Q ss_pred hccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcC
Q 031498 88 FVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 88 Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~ 136 (158)
|-+++......++.|+.-.|-.. ...||..+.|||++|+++++.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHH
Confidence 33467788888888876666544 346677778999999999765
No 100
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=26.05 E-value=37 Score=25.01 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhcCC---CHHHHHhHcCCCCCCCHHHHHHHH
Q 031498 110 GLLDLTCQTVADMIKGK---TPEEIRKTFNIKNDFSPDEEEEVR 150 (158)
Q Consensus 110 ~L~~~~~~~ia~~i~~k---s~eeir~~f~i~~d~t~eee~~i~ 150 (158)
.|+-.+|-+||.++... +..++....+ +-+|.+|..+.+
T Consensus 94 qLv~~acl~iA~K~eE~~~p~~~d~~~~~~--~~~~~~~i~~mE 135 (257)
T 1g3n_C 94 QKTGSACLLVASKLRSLTPISTSSLCYAAA--DSFSRQELIDQE 135 (257)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--TCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHHHHC--CCCCHHHHHHHH
Confidence 57888899999998765 4555544322 238887655443
No 101
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=25.63 E-value=85 Score=23.73 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhccCchh--HHHHHHHHHHHHhcCCCHHHHHhHcCCC-CCCCHHHHHHH
Q 031498 94 NTLFDLILAANYLNIKG--LLDLTCQTVADMIKGKTPEEIRKTFNIK-NDFSPDEEEEV 149 (158)
Q Consensus 94 ~~l~~Ll~AA~~L~i~~--L~~~~~~~ia~~i~~ks~eeir~~f~i~-~d~t~eee~~i 149 (158)
+.||-|++.|++++|++ -++-++.....+++. +|+.-+-=|.+ .++|.+|.+.+
T Consensus 198 DlLFalVnlAR~~gIDpE~ALr~an~KF~~Rf~~--~E~~~~~~g~~l~~~sl~e~d~l 254 (265)
T 3cra_A 198 DLLFATVNLARHLGTKAEIALQKANEKFERRFRE--VERIVAARGLEMTGVDLETMEEV 254 (265)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH--HHHHHHHSCCCCC----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHcCCCcccCCHHHHHHH
Confidence 57899999999999984 334444444444432 34433333433 34666666655
No 102
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=25.60 E-value=44 Score=18.70 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+.|+|..++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 32 KFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHH
Confidence 56788889999999998764
No 103
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=25.33 E-value=32 Score=25.58 Aligned_cols=42 Identities=7% Similarity=0.020 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHhHcCCC-CCCCHHHHHHHHH
Q 031498 110 GLLDLTCQTVADMIKGKTPEEIRKTFNIK-NDFSPDEEEEVRR 151 (158)
Q Consensus 110 ~L~~~~~~~ia~~i~~ks~eeir~~f~i~-~d~t~eee~~i~~ 151 (158)
.|+-.+|-.||.++....+-.++.+-.+. +-+|.+|..+++.
T Consensus 92 qLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~ 134 (252)
T 1f5q_B 92 QSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEV 134 (252)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 68888999999999876332333333333 3488887665543
No 104
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=25.24 E-value=52 Score=24.72 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhcCC---CHHHHHhHcCCCCC-CCHHHHHHHH
Q 031498 109 KGLLDLTCQTVADMIKGK---TPEEIRKTFNIKND-FSPDEEEEVR 150 (158)
Q Consensus 109 ~~L~~~~~~~ia~~i~~k---s~eeir~~f~i~~d-~t~eee~~i~ 150 (158)
-.|+-.+|-+||.++.+. +..++. .+.+. +|.+|..+.+
T Consensus 93 lqlv~~acL~iA~K~eE~~~p~l~~~~---~i~~~~~~~~ei~~mE 135 (283)
T 1w98_B 93 LQLIGISSLFIAAKLEEIYPPKLHQFA---YVTDGACSGDEILTME 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHH---HTTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcHHHHH---HHHcCCCCHHHHHHHH
Confidence 358888999999999876 455554 34443 8887655443
No 105
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=24.87 E-value=2.1e+02 Score=21.00 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHhHcCCCC-CCCHHHHHHHHHh
Q 031498 109 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKN-DFSPDEEEEVRRE 152 (158)
Q Consensus 109 ~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~-d~t~eee~~i~~e 152 (158)
.+|-..-...||+. .-.|++|.|.++.--. -+++++.++|-.+
T Consensus 170 ~gLheFEiAqLANL-cPeTaDEARALIPSL~~k~sDEeLqeILde 213 (221)
T 3hou_D 170 TGLHPFEVAQLGSL-ACDTADEAKTLIPSLNNKISDDELERILKE 213 (221)
T ss_dssp SCCCHHHHHHHHHS-CCCSHHHHHHHCTTCTTSSCHHHHHHHHHH
T ss_pred cCCChHHhheeccc-CCCCHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 45555555556653 5689999999887665 3889988887653
No 106
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=24.75 E-value=49 Score=21.39 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHhHcCC
Q 031498 116 CQTVADMIKGKTPEEIRKTFNI 137 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~i 137 (158)
+..+|+.|+|+++++-..++..
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~ 38 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY 38 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 3568899999999888776653
No 107
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=24.55 E-value=25 Score=16.10 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=7.2
Q ss_pred HHHHHhhhcc
Q 031498 97 FDLILAANYL 106 (158)
Q Consensus 97 ~~Ll~AA~~L 106 (158)
+..+.|||+|
T Consensus 8 f~av~Aanrl 17 (22)
T 3kf9_B 8 FIAVSAANRF 17 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5667788876
No 108
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=24.34 E-value=78 Score=19.99 Aligned_cols=18 Identities=11% Similarity=0.451 Sum_probs=13.1
Q ss_pred HHHHHhc-----CCCHHHHHhHc
Q 031498 118 TVADMIK-----GKTPEEIRKTF 135 (158)
Q Consensus 118 ~ia~~i~-----~ks~eeir~~f 135 (158)
.|+++.. ++|+|+|+..|
T Consensus 54 vI~DRy~~~~~~~RtvEdLK~RY 76 (93)
T 4iej_A 54 VIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHCCTTTSCCCCHHHHHHHH
T ss_pred EEeeccccCCCCCCCHHHHHHHH
Confidence 4667764 57999998855
No 109
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.30 E-value=65 Score=19.07 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=11.1
Q ss_pred hcCCCHHHHHhHcCCC
Q 031498 123 IKGKTPEEIRKTFNIK 138 (158)
Q Consensus 123 i~~ks~eeir~~f~i~ 138 (158)
+.|+|..||.+.+|++
T Consensus 34 ~~g~s~~eIA~~l~is 49 (82)
T 1je8_A 34 AQGLPNKMIARRLDIT 49 (82)
T ss_dssp TTTCCHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 3577777777777765
No 110
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=24.07 E-value=88 Score=16.42 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCH-------HHHHhHcCCCC
Q 031498 117 QTVADMIKGKTP-------EEIRKTFNIKN 139 (158)
Q Consensus 117 ~~ia~~i~~ks~-------eeir~~f~i~~ 139 (158)
..+.+.|.+.|+ ..+.+.||++-
T Consensus 4 ~~iie~i~~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHCCCc
Confidence 456677788874 44566888863
No 111
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=23.88 E-value=76 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=9.3
Q ss_pred CChH-HHHHHHHhhhc
Q 031498 91 VDQN-TLFDLILAANY 105 (158)
Q Consensus 91 ~~~~-~l~~Ll~AA~~ 105 (158)
++.+ .+..+..||++
T Consensus 30 L~~~~e~~~f~~AaDH 45 (71)
T 2jqt_A 30 LTDDQELINMYRAADH 45 (71)
T ss_dssp TCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3444 67777777763
No 112
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=23.88 E-value=1.9e+02 Score=23.12 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhccCch
Q 031498 93 QNTLFDLILAANYLNIK 109 (158)
Q Consensus 93 ~~~l~~Ll~AA~~L~i~ 109 (158)
.+.|-.+..||+.|+++
T Consensus 265 ~~~L~~L~QA~~LLQ~~ 281 (386)
T 3mmi_A 265 RPNLIQIIQAVKILQLK 281 (386)
T ss_dssp GGGGHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHccC
Confidence 45778888888888776
No 113
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=23.55 E-value=70 Score=23.26 Aligned_cols=63 Identities=11% Similarity=0.264 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhhhccCchhHHHHHH----HHHHHH----hcCCCHHHHHhHcCCCCCCCHHHHHHHHHhccccc
Q 031498 92 DQNTLFDLILAANYLNIKGLLDLTC----QTVADM----IKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 157 (158)
Q Consensus 92 ~~~~l~~Ll~AA~~L~i~~L~~~~~----~~ia~~----i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~ 157 (158)
+-..++.++..+.......+++.-. ..++.. ...-++.++.+.+|.+ +++|-+..-++..|..
T Consensus 149 nY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~---s~~e~~~f~~~~gw~i 219 (229)
T 4b0z_A 149 AFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLE---NTKETEKLAEERGWDI 219 (229)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCS---SHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC---CHHHHHHHHHHcCCEE
Confidence 4455666666664433333333322 222222 2334799999999987 4677778888888975
No 114
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=23.48 E-value=57 Score=22.25 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHhcCC--CHHHHHhHcCCCCCCCHHHHHHHHHhccc
Q 031498 108 IKGLLDLTCQTVADMIKGK--TPEEIRKTFNIKNDFSPDEEEEVRRENQW 155 (158)
Q Consensus 108 i~~L~~~~~~~ia~~i~~k--s~eeir~~f~i~~d~t~eee~~i~~e~~w 155 (158)
+..|+...-...++.+.|. +.+++|.....=.-++++-.+.|++.++-
T Consensus 88 v~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~aK~dL~k~FP~ 137 (140)
T 2w9y_A 88 AKKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRKNNPD 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCcC
Confidence 4455566666667777785 78999987632233788988999988864
No 115
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=23.42 E-value=69 Score=18.59 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=14.0
Q ss_pred CCHHHHHhHcCCCCC---CCHHHH
Q 031498 126 KTPEEIRKTFNIKND---FSPDEE 146 (158)
Q Consensus 126 ks~eeir~~f~i~~d---~t~eee 146 (158)
+|.+|-+++|||+.. .|.++.
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~I 24 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKI 24 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHH
Confidence 466777888888765 555443
No 116
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=23.06 E-value=58 Score=20.44 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=9.9
Q ss_pred cCCCHHHHHhHc
Q 031498 124 KGKTPEEIRKTF 135 (158)
Q Consensus 124 ~~ks~eeir~~f 135 (158)
.|+|.+||+.+|
T Consensus 55 ~G~Sd~eI~~~m 66 (90)
T 2kw0_A 55 EGKSKKEIVDYM 66 (90)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 499999998864
No 117
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=22.77 E-value=36 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=10.6
Q ss_pred HHHHHHHHhcccC
Q 031498 55 KVIEYCKKHVEAG 67 (158)
Q Consensus 55 ~Ii~~~~~~~~~~ 67 (158)
.|+.||+||+-..
T Consensus 33 LIL~ycr~~ki~~ 45 (202)
T 1xb4_A 33 IISQYCKTKKIWY 45 (202)
T ss_dssp HHHHHHHHTTCCE
T ss_pred HHHHHHHHhCeeE
Confidence 4999999998653
No 118
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=22.70 E-value=57 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 031498 116 CQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~ 136 (158)
+..+++.|+|+++++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 356889999999988877766
No 119
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=22.33 E-value=35 Score=18.48 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||..+.|+|..++|..+.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 27 SVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46777788999999998764
No 120
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.29 E-value=62 Score=19.99 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.0
Q ss_pred cCCCHHHHHhHc
Q 031498 124 KGKTPEEIRKTF 135 (158)
Q Consensus 124 ~~ks~eeir~~f 135 (158)
.|+|.+||+.+|
T Consensus 58 ~G~sd~eI~~~~ 69 (84)
T 2hl7_A 58 QGKSDGEIVDYM 69 (84)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 499999998865
No 121
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=21.97 E-value=36 Score=23.65 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCC
Q 031498 97 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 140 (158)
Q Consensus 97 ~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d 140 (158)
-.|+.||.-||+-... +.|-..+++++.|||+++
T Consensus 140 ~nl~LaA~~~Glgsc~----------~~~~~~~~v~~~l~lp~~ 173 (204)
T 2b67_A 140 MNLVLALTDQGIGSNI----------ILGFDKSKVNEVLEIEDR 173 (204)
T ss_dssp HHHHHHHHHTTCEEEE----------ECCBCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHCCCceee----------EcccCHHHHHHHhCCCCC
Confidence 4566666666665432 234578899999999865
No 122
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=59 Score=18.81 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=16.4
Q ss_pred HHHHHHhcCCCHHHHHhHc
Q 031498 117 QTVADMIKGKTPEEIRKTF 135 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f 135 (158)
..||..+.|+|..++|..+
T Consensus 33 ~~Ia~~l~~Rt~~qcr~Rw 51 (70)
T 2dim_A 33 SRIASLLHRKSAKQCKARW 51 (70)
T ss_dssp HHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHH
Confidence 6678888999999999965
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.84 E-value=66 Score=17.39 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.4
Q ss_pred HhcCCCHHHHHhHcCCCC
Q 031498 122 MIKGKTPEEIRKTFNIKN 139 (158)
Q Consensus 122 ~i~~ks~eeir~~f~i~~ 139 (158)
...|.|..||.+.+|++.
T Consensus 10 ~~~g~s~~eIA~~l~is~ 27 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISI 27 (61)
T ss_dssp HHTSCCSHHHHHHTCSCH
T ss_pred HHcCCCHHHHHHHhCCCH
Confidence 457889999999998863
No 124
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=21.67 E-value=40 Score=23.56 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCC
Q 031498 95 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 140 (158)
Q Consensus 95 ~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d 140 (158)
.+..|+.||..||+-.. .+.|-..+++++.|||+++
T Consensus 117 a~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~ 152 (200)
T 2fre_A 117 AWFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDG 152 (200)
T ss_dssp HHHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCC
Confidence 34577777777777653 2345578899999999876
No 125
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=21.60 E-value=51 Score=24.50 Aligned_cols=39 Identities=8% Similarity=0.179 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHhcCC---CHHHHHhHcCCCCC-CCHHHHHHHH
Q 031498 109 KGLLDLTCQTVADMIKGK---TPEEIRKTFNIKND-FSPDEEEEVR 150 (158)
Q Consensus 109 ~~L~~~~~~~ia~~i~~k---s~eeir~~f~i~~d-~t~eee~~i~ 150 (158)
..|+-.+|-+||.++.+. +..++.. +.+. +|.+|..+.+
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~---~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAF---VTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHH---HTCSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHH---HhcCCCCHHHHHHHH
Confidence 357788899999999775 4555544 4443 7877655443
No 126
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=21.23 E-value=52 Score=24.24 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhcCC---CHHHHHhHcCCCCC-CCHHHHHHHH
Q 031498 110 GLLDLTCQTVADMIKGK---TPEEIRKTFNIKND-FSPDEEEEVR 150 (158)
Q Consensus 110 ~L~~~~~~~ia~~i~~k---s~eeir~~f~i~~d-~t~eee~~i~ 150 (158)
.|+-.+|-++|.++.+. +..++.. +.+. +|.+|..+.+
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~---i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVY---ITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHH---HTTSSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHH---HHcCCcCHHHHHHHH
Confidence 57778899999999876 4555544 4443 7877655443
No 127
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=21.20 E-value=48 Score=18.28 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcccc
Q 031498 143 PDEEEEVRRENQWA 156 (158)
Q Consensus 143 ~eee~~i~~e~~w~ 156 (158)
.....+++.+|+|+
T Consensus 27 kk~iKklEdeNPWL 40 (50)
T 1a92_A 27 KKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHCTTH
T ss_pred HHHHHhhhccCCch
Confidence 44567888899996
No 128
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=20.44 E-value=62 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 031498 116 CQTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 116 ~~~ia~~i~~ks~eeir~~f~ 136 (158)
-..||..+.+||+.++|.+|.
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 467889999999999999775
No 129
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=65 Score=18.35 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 031498 117 QTVADMIKGKTPEEIRKTFN 136 (158)
Q Consensus 117 ~~ia~~i~~ks~eeir~~f~ 136 (158)
..||. +.|+|..++|..|.
T Consensus 32 ~~Ia~-~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 32 RTIAP-IIGRTAAQCLEHYE 50 (66)
T ss_dssp HHHHH-HHSSCHHHHHHHHH
T ss_pred HHHhc-ccCcCHHHHHHHHH
Confidence 56777 67999999998764
No 130
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=20.25 E-value=43 Score=23.73 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=9.9
Q ss_pred HHHHHHHHhccc
Q 031498 55 KVIEYCKKHVEA 66 (158)
Q Consensus 55 ~Ii~~~~~~~~~ 66 (158)
.|+.||+||+-.
T Consensus 36 LIl~ycr~~k~~ 47 (176)
T 3cuq_C 36 LVLSFCRLHKQS 47 (176)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCee
Confidence 499999999754
No 131
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=20.22 E-value=49 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCC
Q 031498 96 LFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 140 (158)
Q Consensus 96 l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d 140 (158)
+..|+.||..||+-.. ++.+-..+++++.|||+++
T Consensus 119 ~~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~ 153 (191)
T 3h4o_A 119 TDHMMLQATELGLASV----------WVCYFNPDIIREEFSLPDN 153 (191)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCC
Confidence 3466666666666543 2334568999999999875
No 132
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=20.18 E-value=1.6e+02 Score=21.50 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHH----HHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhccccc
Q 031498 107 NIKGLLDLTCQTVA----DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 157 (158)
Q Consensus 107 ~i~~L~~~~~~~ia----~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~ 157 (158)
.|.+|.+..-+.|+ .-.+.-+...+++++|.. ++++.++.-++..|..
T Consensus 130 ~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~---s~~el~~fi~~~GW~v 181 (226)
T 1rz4_A 130 GITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDL---SDSQLKVWMSKYGWSA 181 (226)
T ss_dssp TSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSC---CHHHHHHHHHHHTCEE
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCC---CHHHHHHHHHHCCCEE
Confidence 34556666545554 444456899999999754 4577777777789964
No 133
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=20.13 E-value=86 Score=20.80 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhHcCCCC
Q 031498 111 LLDLTCQTVADMIKGKTPEEIRKTFNIKN 139 (158)
Q Consensus 111 L~~~~~~~ia~~i~~ks~eeir~~f~i~~ 139 (158)
+.+-.|..++ .|.|..+|.+.+|++.
T Consensus 17 ~~e~I~~~i~---~G~sl~~i~~~~~~ps 42 (140)
T 4dyq_A 17 VADDICSLLS---SGESLLKVCKRPGMPD 42 (140)
T ss_dssp HHHHHHHHHH---TTCCHHHHHTSTTCCC
T ss_pred HHHHHHHHHH---CCCcHHHHHhcCCCCC
Confidence 4444555554 5899999998888863
Done!