Query 031499
Match_columns 158
No_of_seqs 111 out of 489
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 14:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2667 COPII vesicle protein 100.0 2.6E-33 5.6E-38 235.9 8.6 148 1-150 58-231 (379)
2 PF07970 COPIIcoated_ERV: Endo 99.7 9.7E-18 2.1E-22 133.6 5.1 74 77-150 9-90 (222)
3 PF13850 ERGIC_N: Endoplasmic 99.6 6.5E-16 1.4E-20 108.4 5.3 44 1-44 53-96 (96)
4 PF12421 DUF3672: Fibronectin 67.8 4.4 9.6E-05 29.9 2.2 24 112-135 30-53 (136)
5 KOG3111 D-ribulose-5-phosphate 45.4 11 0.00025 29.9 1.2 19 22-42 29-47 (224)
6 PF15631 Imm-NTF2-2: NTF2 fold 30.6 10 0.00022 24.7 -1.0 26 113-138 30-55 (66)
7 PF00834 Ribul_P_3_epim: Ribul 24.7 44 0.00096 26.1 1.4 11 23-33 25-35 (201)
8 PRK08883 ribulose-phosphate 3- 23.3 41 0.00088 26.7 1.0 12 22-33 24-35 (220)
9 PRK09722 allulose-6-phosphate 22.7 42 0.00092 26.9 1.0 11 23-33 27-37 (229)
10 PRK08745 ribulose-phosphate 3- 21.1 49 0.0011 26.4 1.1 12 22-33 28-39 (223)
11 PRK08005 epimerase; Validated 20.3 50 0.0011 26.1 1.0 12 22-33 25-36 (210)
12 PF10636 hemP: Hemin uptake pr 20.0 92 0.002 18.0 1.8 20 40-59 17-36 (38)
No 1
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-33 Score=235.91 Aligned_cols=148 Identities=34% Similarity=0.489 Sum_probs=104.6
Q ss_pred CeecCCCCCeeeEEEEEEECcccCCeeeeeeeecCCCeeeccCCCeEEEeecCCCeeeccee---------cc-hhh-hh
Q 031499 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY---------LT-DLV-EK 69 (158)
Q Consensus 1 ~~VD~~~~~~l~In~DItfP~~PC~~LslDv~D~~G~~~~dv~~~i~k~RLd~~G~~i~~~~---------~~-~~~-~~ 69 (158)
++||.+++++|+||||||||+|||++|+|||||.+|+.+++++++|+|.|||. ++|+.+. .. +.. ..
T Consensus 58 ~~vd~s~~e~l~in~DItfp~lpC~~lsVDv~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k~~~p~~~~~ 135 (379)
T KOG2667|consen 58 LFVDDSRDEKLQINFDITFPALPCSILSVDVMDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHKQTIPTTDPI 135 (379)
T ss_pred EEEeCCCCceeeeeeeEEeccCccceEEEEeeccccccccchhhhhhhcccCc--cccccchhhhcccccccccCCCCcc
Confidence 47999999999999999999999999999999999999999999999999999 4443211 00 100 13
Q ss_pred hhccccC--------CCCCCchHHHHHH----hhhcCCCCchhHHHH---HHHHhhcCCCcceEEEEEEEeeeeeeEEEe
Q 031499 70 EHEEHKH--------DHNKDHKDDIDEK----LHAFGFDEDAENMIK---KVKHALESGEGCRVYGVLDVQRVAGNFHIS 134 (158)
Q Consensus 70 ~~~~~~~--------~~~~~~~~~v~~~----~~~~~~~~~~~~~~~---~~~~~~~~~EGCrI~G~l~VnKV~GnfHia 134 (158)
.|..|++ ..||++|+++.+. +|++.......++-. ....+.+.+|||||||+|+|||||||||||
T Consensus 136 ~c~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia 215 (379)
T KOG2667|consen 136 LCGLCYGAEDFNDGDIDCCNLCEDVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIA 215 (379)
T ss_pred chhhhhhhhccccccchhhhcchHHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEc
Confidence 3444432 2367788887664 333332222222111 001133579999999999999999999999
Q ss_pred cCCchhHHHHHhhccc
Q 031499 135 VHGLNIYVAQMVSSFR 150 (158)
Q Consensus 135 ~g~~~~~~~~~~~~~~ 150 (158)
||+....-..+.|++.
T Consensus 216 ~g~~~~~~~~h~hd~~ 231 (379)
T KOG2667|consen 216 PGKSSQHSNAHVHDLS 231 (379)
T ss_pred cCCCccccccccchhh
Confidence 9976655555555553
No 2
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=99.70 E-value=9.7e-18 Score=133.63 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=51.0
Q ss_pred CCCCCchHHHHHHhhhcCCCC-chhHHHHHHHH-------hhcCCCcceEEEEEEEeeeeeeEEEecCCchhHHHHHhhc
Q 031499 77 DHNKDHKDDIDEKLHAFGFDE-DAENMIKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSS 148 (158)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~EGCrI~G~l~VnKV~GnfHia~g~~~~~~~~~~~~ 148 (158)
..||+||++|+++++.-.|.- +++.+.||.++ ..+.+|||||+|+|.||||+||||||||++......++|+
T Consensus 9 ~~CCnTC~~V~~ay~~~~w~~~~~~~~eQC~~~~~~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~hd 88 (222)
T PF07970_consen 9 GKCCNTCEDVREAYRKKGWAFPDLENIEQCRREYVKKIKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSFQQDGGHIHD 88 (222)
T ss_pred CCcCcCHHHHHHHHHHhCCCCCCccccccccchhhhhhhhhccCCCCCEEEEEEEEEEEEEEEEEEecchhccCCcceee
Confidence 468999999987653332221 22333444432 3446799999999999999999999999976554555454
Q ss_pred cc
Q 031499 149 FR 150 (158)
Q Consensus 149 ~~ 150 (158)
+.
T Consensus 89 ~~ 90 (222)
T PF07970_consen 89 LS 90 (222)
T ss_pred hh
Confidence 43
No 3
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=99.61 E-value=6.5e-16 Score=108.35 Aligned_cols=44 Identities=48% Similarity=0.881 Sum_probs=42.1
Q ss_pred CeecCCCCCeeeEEEEEEECcccCCeeeeeeeecCCCeeeccCC
Q 031499 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDT 44 (158)
Q Consensus 1 ~~VD~~~~~~l~In~DItfP~~PC~~LslDv~D~~G~~~~dv~~ 44 (158)
|.||++++++|+||||||||+|||++|++|++|++|++++|++|
T Consensus 53 ~~VD~~~~~~l~in~ditf~~~pC~~l~vDv~D~~G~~~~dv~h 96 (96)
T PF13850_consen 53 LVVDTSRDEKLQINFDITFPHMPCDFLSVDVQDASGDHQLDVTH 96 (96)
T ss_pred EEEcCCCCceEEEEEEEEECCCccCeeeeEeEccCCCeeccccC
Confidence 57999999999999999999999999999999999999999876
No 4
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=67.80 E-value=4.4 Score=29.93 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCCcceEEEEEEEeeeeeeEEEec
Q 031499 112 SGEGCRVYGVLDVQRVAGNFHISV 135 (158)
Q Consensus 112 ~~EGCrI~G~l~VnKV~GnfHia~ 135 (158)
..|.|.|.|+|+.+|+-|.+--+.
T Consensus 30 ~~~~~~~~Gtv~A~~i~GDiv~~~ 53 (136)
T PF12421_consen 30 IAESCTFKGTVYANKIIGDIVKAY 53 (136)
T ss_pred EcccceEEeEEEehhEecceeEEE
Confidence 479999999999999999876543
No 5
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.44 E-value=11 Score=29.89 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=13.6
Q ss_pred ccCCeeeeeeeecCCCeeecc
Q 031499 22 LPCDVLSVDAIDMSGKHEVDL 42 (158)
Q Consensus 22 ~PC~~LslDv~D~~G~~~~dv 42 (158)
.-|++||+|||| |.-.-++
T Consensus 29 ~GadwlHlDVMD--g~FVpNi 47 (224)
T KOG3111|consen 29 AGADWLHLDVMD--GHFVPNI 47 (224)
T ss_pred cCCCeEEEeeec--ccccCCc
Confidence 458999999999 4444343
No 6
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=30.59 E-value=10 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCcceEEEEEEEeeeeeeEEEecCCc
Q 031499 113 GEGCRVYGVLDVQRVAGNFHISVHGL 138 (158)
Q Consensus 113 ~EGCrI~G~l~VnKV~GnfHia~g~~ 138 (158)
+..=-|.|++...-..|+|||.-++.
T Consensus 30 ~~~WiV~Gtl~~~~~GGv~~I~I~K~ 55 (66)
T PF15631_consen 30 GDSWIVEGTLPPGMLGGVFYIEIRKK 55 (66)
T ss_pred CCeEEEEeecCCCccCCeEEEEEEcc
Confidence 44578999998888999999987653
No 7
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.66 E-value=44 Score=26.14 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=9.1
Q ss_pred cCCeeeeeeee
Q 031499 23 PCDVLSVDAID 33 (158)
Q Consensus 23 PC~~LslDv~D 33 (158)
-++++|+|+||
T Consensus 25 g~d~lHiDiMD 35 (201)
T PF00834_consen 25 GADWLHIDIMD 35 (201)
T ss_dssp T-SEEEEEEEB
T ss_pred CCCEEEEeecc
Confidence 37899999999
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.28 E-value=41 Score=26.68 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=10.6
Q ss_pred ccCCeeeeeeee
Q 031499 22 LPCDVLSVDAID 33 (158)
Q Consensus 22 ~PC~~LslDv~D 33 (158)
..+++||+|+||
T Consensus 24 ~g~~~lH~DvmD 35 (220)
T PRK08883 24 AGADVVHFDVMD 35 (220)
T ss_pred cCCCEEEEeccc
Confidence 458899999999
No 9
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=22.73 E-value=42 Score=26.92 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=10.1
Q ss_pred cCCeeeeeeee
Q 031499 23 PCDVLSVDAID 33 (158)
Q Consensus 23 PC~~LslDv~D 33 (158)
.+++||+|+||
T Consensus 27 g~d~lH~DiMD 37 (229)
T PRK09722 27 KADYFHIDIMD 37 (229)
T ss_pred CCCEEEEeccc
Confidence 58899999999
No 10
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.15 E-value=49 Score=26.37 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=10.5
Q ss_pred ccCCeeeeeeee
Q 031499 22 LPCDVLSVDAID 33 (158)
Q Consensus 22 ~PC~~LslDv~D 33 (158)
..+++||+|+||
T Consensus 28 ~g~d~lHiDimD 39 (223)
T PRK08745 28 AGADWVHFDVMD 39 (223)
T ss_pred cCCCEEEEeccc
Confidence 357899999999
No 11
>PRK08005 epimerase; Validated
Probab=20.35 E-value=50 Score=26.13 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=10.5
Q ss_pred ccCCeeeeeeee
Q 031499 22 LPCDVLSVDAID 33 (158)
Q Consensus 22 ~PC~~LslDv~D 33 (158)
..+++||+|+||
T Consensus 25 ~g~d~lHiDvMD 36 (210)
T PRK08005 25 APLGSLHLDIED 36 (210)
T ss_pred CCCCEEEEeccC
Confidence 358899999999
No 12
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=20.00 E-value=92 Score=18.00 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=15.7
Q ss_pred eccCCCeEEEeecCCCeeec
Q 031499 40 VDLDTNIWKLRLNSYGHIIG 59 (158)
Q Consensus 40 ~dv~~~i~k~RLd~~G~~i~ 59 (158)
+.-....|..|+...|+.|-
T Consensus 17 I~H~g~~Y~LR~Tr~gKLIL 36 (38)
T PF10636_consen 17 IEHGGQIYRLRITRQGKLIL 36 (38)
T ss_dssp EEETTEEEEEEEETTTEEEE
T ss_pred EEeCCeEEEeeEccCCcEEE
Confidence 33367799999999999773
Done!