Query 031499
Match_columns 158
No_of_seqs 111 out of 489
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 00:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1brv_A Protein G, BRSV-G regio 35.8 9 0.00031 20.5 0.3 10 17-26 9-18 (32)
2 2ccv_A Helix pomatia agglutini 18.8 26 0.00089 23.4 0.1 32 8-39 30-61 (101)
3 3ctl_A D-allulose-6-phosphate 12.6 77 0.0026 24.0 1.4 12 22-33 24-35 (231)
4 1tqx_A D-ribulose-5-phosphate 12.2 86 0.0029 23.7 1.6 11 23-33 31-41 (227)
5 3ovp_A Ribulose-phosphate 3-ep 11.9 85 0.0029 23.7 1.5 12 22-33 29-40 (228)
6 1sfp_A ASFP; spermadhesin, bov 10.7 3.4E+02 0.012 17.3 4.1 30 4-35 36-65 (114)
7 1spp_B Major seminal plasma gl 10.7 3.3E+02 0.011 17.5 4.1 29 4-34 35-63 (116)
8 3inp_A D-ribulose-phosphate 3- 10.6 99 0.0034 23.8 1.4 11 23-33 53-63 (246)
9 1spp_A Major seminal plasma gl 10.2 3.6E+02 0.012 17.1 4.1 29 4-34 32-60 (109)
10 3pf6_A Hypothetical protein PP 10.1 55 0.0019 19.6 -0.2 16 132-147 31-46 (62)
No 1
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=35.81 E-value=9 Score=20.54 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=8.0
Q ss_pred EEECcccCCe
Q 031499 17 MTFPALPCDV 26 (158)
Q Consensus 17 ItfP~~PC~~ 26 (158)
=|||.+||+.
T Consensus 9 q~l~~VPCsi 18 (32)
T 1brv_A 9 QTLPYVPCST 18 (32)
T ss_pred cccccccccc
Confidence 4789999985
No 2
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=18.77 E-value=26 Score=23.39 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCeeeEEEEEEECcccCCeeeeeeeecCCCee
Q 031499 8 GETLPIHINMTFPALPCDVLSVDAIDMSGKHE 39 (158)
Q Consensus 8 ~~~l~In~DItfP~~PC~~LslDv~D~~G~~~ 39 (158)
.....|.|+-.|+..|--.+++..+|.....+
T Consensus 30 ~~~~~V~F~~~F~~~P~V~v~l~~lD~~~~~n 61 (101)
T 2ccv_A 30 ELAKNITFASPYCRPPVVLLSITQLDVEQSQN 61 (101)
T ss_dssp EEEEEEECSSCCSSCCEEEEEEEEEEECTTSC
T ss_pred EEEEEeEeCcccCCCCEEEEEeEEEecCCCcc
Confidence 34577899999999999999999999876533
No 3
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=12.56 E-value=77 Score=24.03 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=10.1
Q ss_pred ccCCeeeeeeee
Q 031499 22 LPCDVLSVDAID 33 (158)
Q Consensus 22 ~PC~~LslDv~D 33 (158)
.-++++|+|+||
T Consensus 24 ~gad~lHvDvmD 35 (231)
T 3ctl_A 24 SHADYFHIDIMD 35 (231)
T ss_dssp TTCSCEEEEEEC
T ss_pred cCCCEEEEEEEe
Confidence 357889999998
No 4
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=12.18 E-value=86 Score=23.74 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=9.8
Q ss_pred cCCeeeeeeee
Q 031499 23 PCDVLSVDAID 33 (158)
Q Consensus 23 PC~~LslDv~D 33 (158)
-++++|+|+||
T Consensus 31 g~d~iHvDvmD 41 (227)
T 1tqx_A 31 GAEWIHLDVMD 41 (227)
T ss_dssp TCSEEEEEEEB
T ss_pred CCCEEEEEEEe
Confidence 47899999998
No 5
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=11.92 E-value=85 Score=23.66 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=10.2
Q ss_pred ccCCeeeeeeee
Q 031499 22 LPCDVLSVDAID 33 (158)
Q Consensus 22 ~PC~~LslDv~D 33 (158)
.-++++|+||||
T Consensus 29 ~g~d~~h~DVmD 40 (228)
T 3ovp_A 29 SGADYLHLDVMD 40 (228)
T ss_dssp TTCSCEEEEEEB
T ss_pred cCCCEEEEEecC
Confidence 347899999999
No 6
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=10.70 E-value=3.4e+02 Score=17.31 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=21.7
Q ss_pred cCCCCCeeeEEEEEEECcccCCeeeeeeeecC
Q 031499 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMS 35 (158)
Q Consensus 4 D~~~~~~l~In~DItfP~~PC~~LslDv~D~~ 35 (158)
....+.+|.|.|. .| .+.|..=.|.|.|-.
T Consensus 36 ~~~~g~~I~l~f~-~f-~l~C~~D~l~i~dg~ 65 (114)
T 1sfp_A 36 QMPPEYHVRVSIQ-YL-QLNCNKESLEIIDGL 65 (114)
T ss_dssp ECCTTCEEEEEEE-EE-ECCTTTEEEEEESSS
T ss_pred EeCCCCEEEEEEe-ee-eeecCCCEEEEEcCC
Confidence 3456778888887 56 789987777777743
No 7
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=10.70 E-value=3.3e+02 Score=17.46 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=21.4
Q ss_pred cCCCCCeeeEEEEEEECcccCCeeeeeeeec
Q 031499 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDM 34 (158)
Q Consensus 4 D~~~~~~l~In~DItfP~~PC~~LslDv~D~ 34 (158)
....+.+|.|.|. .| .+.|..=.|.|.|-
T Consensus 35 ~~~~g~~I~l~f~-~f-~l~C~~D~l~i~dg 63 (116)
T 1spp_B 35 LMKPDQKVRMAIP-YL-NLACGKEYVEVFDG 63 (116)
T ss_dssp ECCTTCEEEEEEE-EE-ECCBTTEEEEEESS
T ss_pred EeCCCCEEEEEEe-eC-cccCCCCEEEEEcC
Confidence 3456778888887 57 88998777777774
No 8
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=10.64 E-value=99 Score=23.82 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=9.6
Q ss_pred cCCeeeeeeee
Q 031499 23 PCDVLSVDAID 33 (158)
Q Consensus 23 PC~~LslDv~D 33 (158)
-++++|+|+||
T Consensus 53 G~d~lHvDVmD 63 (246)
T 3inp_A 53 GADNIHFDVMD 63 (246)
T ss_dssp TCCCEEEEEEB
T ss_pred CCCEEEEEecC
Confidence 36789999999
No 9
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=10.24 E-value=3.6e+02 Score=17.09 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=21.3
Q ss_pred cCCCCCeeeEEEEEEECcccCCeeeeeeeec
Q 031499 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDM 34 (158)
Q Consensus 4 D~~~~~~l~In~DItfP~~PC~~LslDv~D~ 34 (158)
....+.+|.|.|. .| .+.|.+=.|.|.|-
T Consensus 32 ~~~~g~~I~l~f~-~f-~l~C~~D~l~I~dg 60 (109)
T 1spp_A 32 QVDPKYKLLVSIP-TL-NLTCGKEYVEVLEG 60 (109)
T ss_dssp ECCTTSEEEEEEE-EE-ECCTTTEEEEEESS
T ss_pred EcCCCCEEEEEEe-ee-eccCCCCEEEEEeC
Confidence 3456778888887 57 78998767777774
No 10
>3pf6_A Hypothetical protein PP-LUZ7_GP033; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.60A {Pseudomonas phage LUZ7}
Probab=10.08 E-value=55 Score=19.58 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=10.7
Q ss_pred EEecCCchhHHHHHhh
Q 031499 132 HISVHGLNIYVAQMVS 147 (158)
Q Consensus 132 Hia~g~~~~~~~~~~~ 147 (158)
|.-|||.+|++++.++
T Consensus 31 ~l~pggshhdfmra~m 46 (62)
T 3pf6_A 31 LLFPGGTHHDFMRALM 46 (62)
T ss_dssp HHSCSSCHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHH
Confidence 3457788887766654
Done!