BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031500
MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQ
EAREHNSAAKQATGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGV
VGSHPMGVNTGTGHNPAHNTRVGGGGGATGYGTGGSYN

High Scoring Gene Products

Symbol, full name Information P value
LEA4-5
AT5G06760
protein from Arabidopsis thaliana 1.3e-34
PDCB1
plasmodesmata callose-binding protein 1
protein from Arabidopsis thaliana 9.6e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031500
        (158 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2170239 - symbol:LEA4-5 "AT5G06760" species:37...   375  1.3e-34   1
TAIR|locus:2159436 - symbol:PDCB1 "plasmodesmata callose-...   105  9.6e-06   1


>TAIR|locus:2170239 [details] [associations]
            symbol:LEA4-5 "AT5G06760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009790 "embryo development"
            evidence=IEA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=ISS] [GO:0009409 "response to cold"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0048316 "seed development" evidence=IMP]
            InterPro:IPR005513 Pfam:PF03760 ProDom:PD005538 EMBL:CP002688
            GO:GO:0009409 GO:GO:0009414 GO:GO:0006970 GO:GO:0009790
            GO:GO:0048316 EMBL:AP002032 EMBL:AY050936 EMBL:AY091171
            IPI:IPI00545605 RefSeq:NP_196294.1 UniGene:At.48991 STRING:Q9FG31
            PRIDE:Q9FG31 ProMEX:Q9FG31 EnsemblPlants:AT5G06760.1 GeneID:830565
            KEGG:ath:AT5G06760 TAIR:At5g06760 InParanoid:Q9FG31 OMA:KEDKINQ
            PhylomeDB:Q9FG31 ProtClustDB:CLSN2686892 ArrayExpress:Q9FG31
            Genevestigator:Q9FG31 Uniprot:Q9FG31
        Length = 158

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/145 (53%), Positives = 97/145 (66%)

Query:     1 MQSMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQ 60
             MQSMKE+          GM+KTKAT +EK +KMK  DPV+K+MAT+ KE++  QAE++K+
Sbjct:     1 MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query:    61 EAREHNSAAKQATG---GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
             E R+HN+A K+A G   GLG  TA   +HSTTG  G  TG  QMSAL GHGTGQ   ++ 
Sbjct:    61 ETRQHNAAMKEAAGAGTGLGLGTA---THSTTGQVGHGTGTHQMSALPGHGTGQLTDRVV 117

Query:   118 EGVVGSHPMGVNTGTGHNPAHNTRV 142
             EG   + P+G NTGTG   AHNT V
Sbjct:   118 EGTAVTDPIGRNTGTGRTTAHNTHV 142


>TAIR|locus:2159436 [details] [associations]
            symbol:PDCB1 "plasmodesmata callose-binding protein 1"
            species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma membrane"
            evidence=ISM;IDA] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0046658 "anchored to plasma membrane" evidence=IDA] [GO:0009505
            "plant-type cell wall" evidence=IDA] [GO:0001872
            "(1->3)-beta-D-glucan binding" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0030247 "polysaccharide binding"
            evidence=IDA] [GO:0052543 "callose deposition in cell wall"
            evidence=IMP] [GO:0000096 "sulfur amino acid metabolic process"
            evidence=RCA] [GO:0008652 "cellular amino acid biosynthetic
            process" evidence=RCA] [GO:0009069 "serine family amino acid
            metabolic process" evidence=RCA] [GO:0009664 "plant-type cell wall
            organization" evidence=RCA] [GO:0009740 "gibberellic acid mediated
            signaling pathway" evidence=RCA] [GO:0010162 "seed dormancy
            process" evidence=RCA] [GO:0042545 "cell wall modification"
            evidence=RCA] GO:GO:0009506 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009505 EMBL:AB006696 GO:GO:0046658 GO:GO:0001872 CAZy:CBM43
            InterPro:IPR012946 Pfam:PF07983 SMART:SM00768 EMBL:BT005195
            EMBL:BT003876 IPI:IPI00528246 RefSeq:NP_200921.2 UniGene:At.29122
            ProteinModelPortal:Q9FNQ2 SMR:Q9FNQ2 PaxDb:Q9FNQ2 PRIDE:Q9FNQ2
            EnsemblPlants:AT5G61130.1 GeneID:836234 KEGG:ath:AT5G61130
            TAIR:At5g61130 eggNOG:NOG290618 HOGENOM:HOG000238097
            InParanoid:Q9FNQ2 OMA:INPDYTT PhylomeDB:Q9FNQ2
            ProtClustDB:CLSN2687251 Genevestigator:Q9FNQ2 GermOnline:AT5G61130
            GO:GO:0052543 Uniprot:Q9FNQ2
        Length = 201

 Score = 105 (42.0 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 29/71 (40%), Positives = 34/71 (47%)

Query:    73 TGGLGYTTADSYSHSTTGMHG--RPTGGQQMSALAGHGTGQP-AGQMTEGVVGSHPMGVN 129
             TG    T+A   S STT   G   P G    + L G GT  P +G  T GV G +  G  
Sbjct:   100 TGCAFPTSASGSSGSTTVTPGTTNPKGSPTTTTLPGSGTNSPYSGNPTNGVFGGNSTGGT 159

Query:   130 TGTGHNPAHNT 140
             TGTG NP + T
Sbjct:   160 TGTGINPDYTT 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.303   0.119   0.328    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       135   0.00091  102 3  11 23  0.41    32
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  468 (50 KB)
  Total size of DFA:  104 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.14u 0.22s 22.36t   Elapsed:  00:00:01
  Total cpu time:  22.14u 0.22s 22.36t   Elapsed:  00:00:01
  Start:  Sat May 11 04:27:10 2013   End:  Sat May 11 04:27:11 2013

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