Query 031500
Match_columns 158
No_of_seqs 68 out of 70
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 15:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03760 LEA_1: Late embryogen 100.0 2.5E-28 5.4E-33 175.0 8.4 73 1-73 1-73 (73)
2 PF07946 DUF1682: Protein of u 80.3 6 0.00013 34.4 6.4 42 13-56 254-295 (321)
3 PRK00247 putative inner membra 74.8 5.3 0.00012 37.0 4.8 34 29-62 347-380 (429)
4 PF02987 LEA_4: Late embryogen 73.9 6.1 0.00013 25.1 3.6 33 1-33 1-33 (44)
5 PF03760 LEA_1: Late embryogen 66.4 13 0.00028 27.1 4.3 60 13-72 2-61 (73)
6 PRK00247 putative inner membra 66.0 16 0.00035 33.9 5.9 12 40-51 347-358 (429)
7 PF02987 LEA_4: Late embryogen 61.7 14 0.0003 23.5 3.3 32 2-33 13-44 (44)
8 PRK09174 F0F1 ATP synthase sub 61.7 44 0.00095 27.6 7.2 32 3-34 98-129 (204)
9 PRK01558 V-type ATP synthase s 58.6 40 0.00088 27.4 6.4 40 3-44 19-58 (198)
10 PRK13454 F0F1 ATP synthase sub 54.4 74 0.0016 25.5 7.2 31 4-34 77-107 (181)
11 PRK13455 F0F1 ATP synthase sub 52.7 70 0.0015 25.3 6.7 34 3-36 72-105 (184)
12 PRK09173 F0F1 ATP synthase sub 52.6 74 0.0016 24.4 6.7 33 4-36 48-80 (159)
13 PRK09173 F0F1 ATP synthase sub 50.4 32 0.00069 26.5 4.3 19 4-22 66-84 (159)
14 PRK14475 F0F1 ATP synthase sub 49.9 84 0.0018 24.6 6.7 36 3-38 55-90 (167)
15 CHL00118 atpG ATP synthase CF0 47.9 1.2E+02 0.0025 23.5 7.2 32 5-36 69-100 (156)
16 PRK14471 F0F1 ATP synthase sub 46.8 1.2E+02 0.0027 23.3 7.2 29 5-33 55-83 (164)
17 PRK06231 F0F1 ATP synthase sub 44.2 1.3E+02 0.0027 24.8 7.2 33 4-36 94-126 (205)
18 KOG1924 RhoA GTPase effector D 43.5 1.6E+02 0.0035 30.6 8.9 37 38-74 478-515 (1102)
19 PRK03963 V-type ATP synthase s 42.2 1.5E+02 0.0033 23.3 7.2 30 3-32 14-43 (198)
20 PRK07352 F0F1 ATP synthase sub 41.9 1.6E+02 0.0034 23.1 7.2 33 4-36 65-97 (174)
21 PF14235 DUF4337: Domain of un 41.3 1.4E+02 0.003 24.0 6.8 9 23-31 68-76 (157)
22 PRK14472 F0F1 ATP synthase sub 39.6 1.8E+02 0.0039 22.8 7.2 33 4-36 64-96 (175)
23 PRK01005 V-type ATP synthase s 39.3 95 0.0021 25.9 5.8 34 2-35 23-56 (207)
24 PRK08475 F0F1 ATP synthase sub 38.5 1.6E+02 0.0035 23.3 6.7 32 5-36 69-100 (167)
25 PRK07353 F0F1 ATP synthase sub 38.4 1.6E+02 0.0036 21.8 6.7 30 5-34 52-81 (140)
26 PRK00106 hypothetical protein; 37.6 1.5E+02 0.0032 28.4 7.4 8 1-8 26-33 (535)
27 CHL00019 atpF ATP synthase CF0 37.5 1.7E+02 0.0036 23.2 6.7 34 3-36 69-102 (184)
28 PRK13460 F0F1 ATP synthase sub 37.2 1.7E+02 0.0038 22.9 6.7 33 4-36 62-94 (173)
29 PRK13453 F0F1 ATP synthase sub 35.7 2.2E+02 0.0048 22.4 7.2 32 5-36 65-96 (173)
30 PF01991 vATP-synt_E: ATP synt 34.9 1.8E+02 0.004 22.3 6.4 32 2-33 4-35 (198)
31 PRK14473 F0F1 ATP synthase sub 33.5 2.2E+02 0.0048 21.9 6.7 31 5-35 55-85 (164)
32 KOG2505 Ankyrin repeat protein 32.8 51 0.0011 32.1 3.6 39 18-58 505-543 (591)
33 PRK01194 V-type ATP synthase s 32.5 2.7E+02 0.0058 22.5 7.4 60 3-63 13-74 (185)
34 PF07946 DUF1682: Protein of u 31.2 96 0.0021 27.0 4.8 11 23-33 273-283 (321)
35 TIGR03321 alt_F1F0_F0_B altern 27.3 3.3E+02 0.0072 22.6 7.2 31 5-35 52-82 (246)
36 TIGR01932 hflC HflC protein. H 27.3 3.1E+02 0.0068 23.7 7.2 24 39-62 247-270 (317)
37 PRK08476 F0F1 ATP synthase sub 26.1 3E+02 0.0066 21.1 7.9 29 5-33 54-82 (141)
38 PF03763 Remorin_C: Remorin, C 25.6 2.8E+02 0.006 21.1 5.9 60 15-74 33-103 (111)
39 PRK14474 F0F1 ATP synthase sub 24.6 3.9E+02 0.0084 22.6 7.2 29 6-34 53-81 (250)
40 PF06936 Selenoprotein_S: Sele 24.1 3.2E+02 0.0069 22.8 6.4 24 10-33 76-99 (190)
41 KOG4848 Extracellular matrix-a 23.8 4.1E+02 0.0089 23.2 7.1 42 32-73 183-224 (225)
42 PRK13428 F0F1 ATP synthase sub 23.5 3.5E+02 0.0077 24.8 7.2 17 18-34 61-77 (445)
43 PF08690 GET2: GET complex sub 22.9 75 0.0016 28.1 2.6 17 38-54 5-21 (302)
44 cd07598 BAR_FAM92 The Bin/Amph 22.4 2.5E+02 0.0054 23.4 5.5 31 26-64 119-149 (211)
45 TIGR00570 cdk7 CDK-activating 20.5 4.1E+02 0.0089 24.0 6.8 28 22-49 136-163 (309)
No 1
>PF03760 LEA_1: Late embryogenesis abundant (LEA) group 1 ; InterPro: IPR005513 LEA proteins are late embryonic proteins abundant in higher plant seed embryos. They may play an essential role in seed survival and control of water exchanges during seed desiccation and imbibition. Family members are conserved along the entire coding region, especially within the hydrophobic internal 20 amino acid motif. This motif may be repeated.; GO: 0009790 embryo development
Probab=99.95 E-value=2.5e-28 Score=174.96 Aligned_cols=73 Identities=60% Similarity=0.732 Sum_probs=71.6
Q ss_pred ChhHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhc
Q 031500 1 MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQAT 73 (158)
Q Consensus 1 Mqs~KEkaan~aASAKag~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~aka~nAA~k~~a 73 (158)
||++||+++||+||||++|+|+||++|||+||+|||||.||+||+||+++|++||||+||++|++|+++++.+
T Consensus 1 Mqa~Kek~~n~~asAka~~~k~kA~aqEKaeK~tA~~~~eKe~A~erk~ak~a~Ae~~~h~aka~~aa~k~~a 73 (73)
T PF03760_consen 1 MQAAKEKAANAAASAKAKMEKTKAKAQEKAEKATARDPEEKEMAHERKEAKEAQAEMDKHQAKAENAAEKEAA 73 (73)
T ss_pred ChhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=80.30 E-value=6 Score=34.36 Aligned_cols=42 Identities=31% Similarity=0.365 Sum_probs=26.2
Q ss_pred HhHhhhhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHH
Q 031500 13 ASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAE 56 (158)
Q Consensus 13 ASAKag~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe 56 (158)
.-++.++++++..+.++..|... ..+.|++.+||++++.+.+
T Consensus 254 ~e~~~K~~k~R~~~~~~~~K~~~--~~r~E~~~~~k~e~kr~e~ 295 (321)
T PF07946_consen 254 PEAKKKAKKNREEEEEKILKEAH--QERQEEAQEKKEEKKREER 295 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 34677888899988888888753 2333444455544444433
No 3
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=74.76 E-value=5.3 Score=37.01 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=20.5
Q ss_pred hhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 031500 29 KVDKMKAHDPVEKEMATEKKEERRMQAELEKQEA 62 (158)
Q Consensus 29 KaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~a 62 (158)
|-++...|...++||.+|+.++|.+.++..+++-
T Consensus 347 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
T PRK00247 347 KKEIAQKRRAAEREINREARQERAAAMARARARR 380 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344555666677777777777766655554433
No 4
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=73.86 E-value=6.1 Score=25.15 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=26.5
Q ss_pred ChhHHHHHHhHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 1 MQSMKESAANVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 1 Mqs~KEkaan~aASAKag~ektKA~aqEKaEKa 33 (158)
++.+++|++++..+++.+...++-.+.+|++.+
T Consensus 1 ke~a~~Ka~e~~d~a~~ka~e~kd~a~eKa~ea 33 (44)
T PF02987_consen 1 KEAAKEKASEAKDAAKEKAGEAKDAAAEKAEEA 33 (44)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888887654
No 5
>PF03760 LEA_1: Late embryogenesis abundant (LEA) group 1 ; InterPro: IPR005513 LEA proteins are late embryonic proteins abundant in higher plant seed embryos. They may play an essential role in seed survival and control of water exchanges during seed desiccation and imbibition. Family members are conserved along the entire coding region, especially within the hydrophobic internal 20 amino acid motif. This motif may be repeated.; GO: 0009790 embryo development
Probab=66.38 E-value=13 Score=27.05 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=35.2
Q ss_pred HhHhhhhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHh
Q 031500 13 ASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQA 72 (158)
Q Consensus 13 ASAKag~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~aka~nAA~k~~ 72 (158)
.++|+++.-.-+++.+++++..|.-.+.-|-++-|-...+.-|..+++.-+++-..+++.
T Consensus 2 qa~Kek~~n~~asAka~~~k~kA~aqEKaeK~tA~~~~eKe~A~erk~ak~a~Ae~~~h~ 61 (73)
T PF03760_consen 2 QAAKEKAANAAASAKAKMEKTKAKAQEKAEKATARDPEEKEMAHERKEAKEAQAEMDKHQ 61 (73)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888876666555444444444444444444444444433334433
No 6
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=65.96 E-value=16 Score=33.91 Aligned_cols=12 Identities=25% Similarity=0.554 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 031500 40 EKEMATEKKEER 51 (158)
Q Consensus 40 eKe~A~erk~ak 51 (158)
.|+++.+|++++
T Consensus 347 ~k~~~~~~~~~~ 358 (429)
T PRK00247 347 KKEIAQKRRAAE 358 (429)
T ss_pred HHHHHHHHHHHH
Confidence 477888777766
No 7
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=61.71 E-value=14 Score=23.51 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=26.3
Q ss_pred hhHHHHHHhHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 2 QSMKESAANVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 2 qs~KEkaan~aASAKag~ektKA~aqEKaEKa 33 (158)
.++++++.++..++.++...+|-++.+|++.+
T Consensus 13 d~a~~ka~e~kd~a~eKa~eaKd~a~eka~ea 44 (44)
T PF02987_consen 13 DAAKEKAGEAKDAAAEKAEEAKDSAKEKAGEA 44 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46788888888899999999988888887643
No 8
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.71 E-value=44 Score=27.62 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=22.7
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhc
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKMK 34 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKat 34 (158)
..|+.+.++-+..+..+.+++..+++-.+.+.
T Consensus 98 ~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar 129 (204)
T PRK09174 98 RLKQEADAAVAAYEQELAQARAKAHSIAQAAR 129 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777777653
No 9
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=58.60 E-value=40 Score=27.36 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=28.9
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccCChhHHHHH
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMA 44 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKatAr~~~eKe~A 44 (158)
-+++.+..+-+.|++..++..+.+++++++.- ...+++..
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~--~kAe~ea~ 58 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELK--AKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 46777888888888888888888888888772 22444444
No 10
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=54.38 E-value=74 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=18.8
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhc
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMK 34 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKat 34 (158)
.++.+...-+...+.+.+++..+++-.+++.
T Consensus 77 ~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~ 107 (181)
T PRK13454 77 LKQKAVEAEKAYNKALADARAEAQRIVAETR 107 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666653
No 11
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=52.69 E-value=70 Score=25.31 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=23.1
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
..++.+.+.-+.+++.+..++..+++-.+.+...
T Consensus 72 ~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~ 105 (184)
T PRK13455 72 ALREEAQTLLASYERKQREVQEQADRIVAAAKDE 105 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777777777665443
No 12
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=52.57 E-value=74 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=19.9
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
.++.+...-+..++.+..++..+++-++.+...
T Consensus 48 ~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~ 80 (159)
T PRK09173 48 LREEAQQLLAEYQRKRKEAEKEAADIVAAAERE 80 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666655444
No 13
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=50.36 E-value=32 Score=26.49 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHhHHHhHhhhhhhh
Q 031500 4 MKESAANVAASAKAGMEKT 22 (158)
Q Consensus 4 ~KEkaan~aASAKag~ekt 22 (158)
++..+..+.+.|+...+..
T Consensus 66 A~~ea~~ii~~A~~~a~~~ 84 (159)
T PRK09173 66 AEKEAADIVAAAEREAEAL 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 14
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=49.93 E-value=84 Score=24.59 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=21.2
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccCCh
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDP 38 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKatAr~~ 38 (158)
..|+.+...-+.++..+..++..+++-++++...-.
T Consensus 55 ~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~ 90 (167)
T PRK14475 55 RLREEAQALLADVKAEREEAERQAAAMLAAAKADAR 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666665554433
No 15
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=47.86 E-value=1.2e+02 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
++.+...-+..++.+.+++..+++-.+.+...
T Consensus 69 ~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 69 LAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555544433
No 16
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=46.84 E-value=1.2e+02 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.223 Sum_probs=13.5
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKa 33 (158)
++.+...-+...+.+..++..+++-.+.+
T Consensus 55 ~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 55 RKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555544444443
No 17
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=44.17 E-value=1.3e+02 Score=24.79 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=17.3
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
.++.+...-..++..+..++..+++-.+.+...
T Consensus 94 ~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~e 126 (205)
T PRK06231 94 LKQQAQQLLENAKQRHENALAQAKEIIDQANYE 126 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555554443
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.45 E-value=1.6e+02 Score=30.63 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHhcc
Q 031500 38 PVEKEMATEKKEERRMQAELEKQEAREH-NSAAKQATG 74 (158)
Q Consensus 38 ~~eKe~A~erk~ak~aqAe~~kh~aka~-nAA~k~~a~ 74 (158)
..||++-++--.-.++|||+.||++|-. --++++...
T Consensus 478 e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~ 515 (1102)
T KOG1924|consen 478 ELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALS 515 (1102)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhcc
Confidence 3567777777777788999999997643 234444433
No 19
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=42.24 E-value=1.5e+02 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=20.3
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhh
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDK 32 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEK 32 (158)
.+++.+..+-+.|+...++....+.+++++
T Consensus 14 ~A~~ea~~il~~A~~~a~~i~~~a~~~a~~ 43 (198)
T PRK03963 14 EAEQKIEYILEEAQKEAEKIKEEARKRAES 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666666664
No 20
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=41.91 E-value=1.6e+02 Score=23.09 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
.++.+...-+.+++.+.+++..+++-++.+...
T Consensus 65 ~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~ 97 (174)
T PRK07352 65 RLRQAAQALAEAQQKLAQAQQEAERIRADAKAR 97 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666665555443
No 21
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=41.30 E-value=1.4e+02 Score=23.95 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.6
Q ss_pred hHhHhhhhh
Q 031500 23 KATAQEKVD 31 (158)
Q Consensus 23 KA~aqEKaE 31 (158)
++..+.|++
T Consensus 68 ~~~~~~~i~ 76 (157)
T PF14235_consen 68 RAAYQKKIA 76 (157)
T ss_pred hhhHHHHHH
Confidence 344444433
No 22
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=39.56 E-value=1.8e+02 Score=22.78 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
.++.+...-+.++..+..++..+++-.+.+...
T Consensus 64 ~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 96 (175)
T PRK14472 64 AKDEAEAILRKNRELLAKADAEADKIIREGKEY 96 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666655433
No 23
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=39.34 E-value=95 Score=25.90 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=22.3
Q ss_pred hhHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhcc
Q 031500 2 QSMKESAANVAASAKAGMEKTKATAQEKVDKMKA 35 (158)
Q Consensus 2 qs~KEkaan~aASAKag~ektKA~aqEKaEKatA 35 (158)
+.+++.+..+-+.|+...++.-..++.+++++-.
T Consensus 23 ~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~ 56 (207)
T PRK01005 23 KPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIR 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777666666666665544
No 24
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=38.46 E-value=1.6e+02 Score=23.26 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
++.+...-+-+++.+..++..+++-.+.+...
T Consensus 69 ~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~e 100 (167)
T PRK08475 69 LKESKEKKEDALKKLEEAKEKAELIVETAKKE 100 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555554443
No 25
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=38.36 E-value=1.6e+02 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=14.9
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhhc
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKMK 34 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKat 34 (158)
++.+...-+-+++.+..++..+.+-.+.+.
T Consensus 52 ~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 52 LAEAEKLEAQYEQQLASARKQAQAVIAEAE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555444443
No 26
>PRK00106 hypothetical protein; Provisional
Probab=37.58 E-value=1.5e+02 Score=28.40 Aligned_cols=8 Identities=63% Similarity=0.733 Sum_probs=4.1
Q ss_pred ChhHHHHH
Q 031500 1 MQSMKESA 8 (158)
Q Consensus 1 Mqs~KEka 8 (158)
|.|+||.+
T Consensus 26 ~~~~~~~~ 33 (535)
T PRK00106 26 MKSAKEAA 33 (535)
T ss_pred HhhhHHHH
Confidence 45555544
No 27
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=37.52 E-value=1.7e+02 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=20.6
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
..++.+...-+.+++.+..++..+++-.+.+...
T Consensus 69 ~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 102 (184)
T CHL00019 69 ERREEAIEKLEKARARLRQAELEADEIRVNGYSE 102 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666655443
No 28
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=37.22 E-value=1.7e+02 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
.++.+...-+.++..+..++..+++-.+.+...
T Consensus 62 ~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~e 94 (173)
T PRK13460 62 LRLEAEALLKDYEARLNSAKDEANAIVAEAKSD 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666655444
No 29
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.68 E-value=2.2e+02 Score=22.44 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhhccC
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKMKAH 36 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKatAr 36 (158)
++.+...-+..+..+..++..+++-++.+...
T Consensus 65 ~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~ 96 (173)
T PRK13453 65 KLNAQKLEEENKQKLKETQEEVQKILEDAKVQ 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555444433
No 30
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=34.93 E-value=1.8e+02 Score=22.26 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=23.9
Q ss_pred hhHHHHHHhHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 2 QSMKESAANVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 2 qs~KEkaan~aASAKag~ektKA~aqEKaEKa 33 (158)
+-+++++..+-+.|++..++-.+.+.+++++-
T Consensus 4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~ 35 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKE 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888777776665443
No 31
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=33.53 E-value=2.2e+02 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=15.0
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhhcc
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKMKA 35 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKatA 35 (158)
++.+...-+-.++.+..++..+++-.+.+..
T Consensus 55 ~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~ 85 (164)
T PRK14473 55 REQLANAKRDYEAELAKARQEAAKIVAQAQE 85 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554444443
No 32
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=32.85 E-value=51 Score=32.13 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=16.7
Q ss_pred hhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 031500 18 GMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELE 58 (158)
Q Consensus 18 g~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~ 58 (158)
..++-.++.-||.++-.+.....|||++ +++|...|||-
T Consensus 505 q~~eq~ekkkek~anqka~kk~kkelrk--aeekqk~ae~s 543 (591)
T KOG2505|consen 505 QEREQAEKKKEKKANQKAKKKLKKELRK--AEEKQKYAEMS 543 (591)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3333344444444444444444444443 33344444443
No 33
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=32.47 E-value=2.7e+02 Score=22.47 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=32.6
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKMKAHD--PVEKEMATEKKEERRMQAELEKQEAR 63 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKatAr~--~~eKe~A~erk~ak~aqAe~~kh~ak 63 (158)
.+.+++..+-+.|+...++..+.+++++++....- ..++ .+...++.-+..|+++.+..+
T Consensus 13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~-e~~~~~~riis~A~Le~R~~~ 74 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRA-EISRLKKSIIDKANIEARSIK 74 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHH
Confidence 45566666666677776666666666666554332 2222 233334444456666655533
No 34
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=31.21 E-value=96 Score=27.00 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=4.6
Q ss_pred hHhHhhhhhhh
Q 031500 23 KATAQEKVDKM 33 (158)
Q Consensus 23 KA~aqEKaEKa 33 (158)
|+.-+++.|.+
T Consensus 273 K~~~~~r~E~~ 283 (321)
T PF07946_consen 273 KEAHQERQEEA 283 (321)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 35
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.34 E-value=3.3e+02 Score=22.60 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=15.6
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhhcc
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKMKA 35 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKatA 35 (158)
++.+...-+.+++.+..++..+++-++++..
T Consensus 52 ~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~ 82 (246)
T TIGR03321 52 KREAEQERREYEEKNEELDQQREVLLTKAKE 82 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555554433
No 36
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=27.27 E-value=3.1e+02 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031500 39 VEKEMATEKKEERRMQAELEKQEA 62 (158)
Q Consensus 39 ~eKe~A~erk~ak~aqAe~~kh~a 62 (158)
..|.+|+-.+++++..|+.|....
T Consensus 247 ~~~~~aeA~a~a~~~~Aegea~a~ 270 (317)
T TIGR01932 247 VRKILSEAYRTARIIKGEGDAEAA 270 (317)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444444445555555444333
No 37
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.15 E-value=3e+02 Score=21.08 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=14.4
Q ss_pred HHHHHhHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 5 KESAANVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 5 KEkaan~aASAKag~ektKA~aqEKaEKa 33 (158)
++.+.+.-....+.+..++..++.-.+++
T Consensus 54 ~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 54 SSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555444433
No 38
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=25.59 E-value=2.8e+02 Score=21.15 Aligned_cols=60 Identities=27% Similarity=0.372 Sum_probs=30.5
Q ss_pred HhhhhhhhhHh-----HhhhhhhhccC--ChhHHHHHHHHHHHHHHHHHHH----HHHHHHhcHHHHHhcc
Q 031500 15 AKAGMEKTKAT-----AQEKVDKMKAH--DPVEKEMATEKKEERRMQAELE----KQEAREHNSAAKQATG 74 (158)
Q Consensus 15 AKag~ektKA~-----aqEKaEKatAr--~~~eKe~A~erk~ak~aqAe~~----kh~aka~nAA~k~~a~ 74 (158)
+|+...++||. ++.|+|+..++ +....+|+.-.+.+-+..|..+ .+..+....|.+.+.+
T Consensus 33 aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~t 103 (111)
T PF03763_consen 33 AWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRAT 103 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhC
Confidence 44555555543 45666666554 4455555555544444333332 3344555666666554
No 39
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.61 E-value=3.9e+02 Score=22.63 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=13.1
Q ss_pred HHHHhHHHhHhhhhhhhhHhHhhhhhhhc
Q 031500 6 ESAANVAASAKAGMEKTKATAQEKVDKMK 34 (158)
Q Consensus 6 Ekaan~aASAKag~ektKA~aqEKaEKat 34 (158)
+.+...-.-++..+..++..+++-++++.
T Consensus 53 ~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 81 (250)
T PRK14474 53 QEAGQEAERYRQKQQSLEQQRASFMAQAQ 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445544444444444443
No 40
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=24.15 E-value=3.2e+02 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=13.7
Q ss_pred hHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 10 NVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 10 n~aASAKag~ektKA~aqEKaEKa 33 (158)
|+...-.+.|+.++.+.||..++-
T Consensus 76 d~v~~rqEa~eaAR~RmQEE~dak 99 (190)
T PF06936_consen 76 DVVVRRQEAMEAARRRMQEELDAK 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666665554
No 41
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=23.83 E-value=4.1e+02 Score=23.17 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=34.0
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhc
Q 031500 32 KMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQAT 73 (158)
Q Consensus 32 KatAr~~~eKe~A~erk~ak~aqAe~~kh~aka~nAA~k~~a 73 (158)
++..||+-=+||-.++.++-+-..++.|+.+|.+...+++.+
T Consensus 183 ~vDprd~RF~emLqqkEkeekK~~KeaKrk~k~ekr~A~lv~ 224 (225)
T KOG4848|consen 183 WVDPRDPRFEEMLQQKEKEEKKAVKEAKRKEKQEKRFAELVQ 224 (225)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577889999999888877777777888999998888877653
No 42
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.52 E-value=3.5e+02 Score=24.78 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=7.0
Q ss_pred hhhhhhHhHhhhhhhhc
Q 031500 18 GMEKTKATAQEKVDKMK 34 (158)
Q Consensus 18 g~ektKA~aqEKaEKat 34 (158)
.+..++..+++-++++.
T Consensus 61 ~L~~Ak~ea~~Ii~~A~ 77 (445)
T PRK13428 61 AVEDAKAEAARVVEEAR 77 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 43
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=22.90 E-value=75 Score=28.07 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 031500 38 PVEKEMATEKKEERRMQ 54 (158)
Q Consensus 38 ~~eKe~A~erk~ak~aq 54 (158)
.++++|.+||+|+|+.+
T Consensus 5 aEkrRLrRERReAKi~~ 21 (302)
T PF08690_consen 5 AEKRRLRRERREAKIKA 21 (302)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 45678999999999864
No 44
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.42 E-value=2.5e+02 Score=23.41 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=19.7
Q ss_pred HhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031500 26 AQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEARE 64 (158)
Q Consensus 26 aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~aka 64 (158)
-++++||...++|.+|. .+.+||.++++++.
T Consensus 119 ~~~~leklk~~~~~d~~--------~i~eaE~~l~~a~~ 149 (211)
T cd07598 119 QLKQLEKLRQKNPSDRQ--------IISQAESELQKASV 149 (211)
T ss_pred HHHHHHHHHhcCCchhh--------HHHHHHHHHHHHHH
Confidence 45778888777776554 33456666666654
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.49 E-value=4.1e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=12.4
Q ss_pred hhHhHhhhhhhhccCChhHHHHHHHHHH
Q 031500 22 TKATAQEKVDKMKAHDPVEKEMATEKKE 49 (158)
Q Consensus 22 tKA~aqEKaEKatAr~~~eKe~A~erk~ 49 (158)
.++...+..+....+-..|++++.+|++
T Consensus 136 n~~~~~~e~~~~~~~~~~E~~~~~~rr~ 163 (309)
T TIGR00570 136 NKEKSTREQEELEEALEFEKEEEEQRRL 163 (309)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334555555555443
Done!