Query 031500
Match_columns 158
No_of_seqs 68 out of 70
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 00:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 57.1 29 0.00098 29.1 6.8 67 3-69 370-464 (471)
2 4efa_E V-type proton ATPase su 48.0 96 0.0033 24.1 8.5 25 2-26 26-50 (233)
3 3v6i_A V-type ATP synthase sub 38.8 82 0.0028 23.6 6.2 31 4-34 11-41 (187)
4 3u1c_A Tropomyosin alpha-1 cha 37.8 1E+02 0.0036 21.7 6.7 26 38-63 41-66 (101)
5 1jzp_A Skeletal dihydropydrine 36.4 23 0.00079 20.5 2.1 18 38-55 2-19 (26)
6 1ic2_A Tropomyosin alpha chain 34.7 1E+02 0.0035 20.7 7.3 69 1-72 1-72 (81)
7 3u59_A Tropomyosin beta chain; 33.9 1.2E+02 0.0041 21.1 6.7 23 39-61 42-64 (101)
8 3lay_A Zinc resistance-associa 32.2 1.8E+02 0.0061 22.7 8.2 67 5-71 73-143 (175)
9 3bk6_A PH stomatin; archaea, t 21.1 1.7E+02 0.0058 21.6 5.1 31 41-71 125-155 (188)
10 3v6i_A V-type ATP synthase sub 17.3 3.2E+02 0.011 20.3 7.3 31 3-33 21-51 (187)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.07 E-value=29 Score=29.14 Aligned_cols=67 Identities=13% Similarity=0.257 Sum_probs=43.5
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHh---------Hhhhhhhhc-------------------cCChhHHHHHHHHHHHHHHH
Q 031500 3 SMKESAANVAASAKAGMEKTKAT---------AQEKVDKMK-------------------AHDPVEKEMATEKKEERRMQ 54 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~---------aqEKaEKat-------------------Ar~~~eKe~A~erk~ak~aq 54 (158)
+.++.++++....++-+++.++. +|.|.+... -.+..||+.+...|+-++.+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE 449 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665 455444321 12467788888888888888
Q ss_pred HHHHHHHHHHhcHHH
Q 031500 55 AELEKQEAREHNSAA 69 (158)
Q Consensus 55 Ae~~kh~aka~nAA~ 69 (158)
+|..++..+-+++.+
T Consensus 450 ~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 450 GEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777666543
No 2
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=48.03 E-value=96 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=15.6
Q ss_pred hhHHHHHHhHHHhHhhhhhhhhHhH
Q 031500 2 QSMKESAANVAASAKAGMEKTKATA 26 (158)
Q Consensus 2 qs~KEkaan~aASAKag~ektKA~a 26 (158)
|-++||+..|-+.|.+-.++-|..+
T Consensus 26 qEA~eKA~EI~~kAeeE~~~ek~~~ 50 (233)
T 4efa_E 26 KEAEEKAKEIQLKADQEYEIEKTNI 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776655444433
No 3
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=38.83 E-value=82 Score=23.60 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHHhHHHhHhhhhhhhhHhHhhhhhhhc
Q 031500 4 MKESAANVAASAKAGMEKTKATAQEKVDKMK 34 (158)
Q Consensus 4 ~KEkaan~aASAKag~ektKA~aqEKaEKat 34 (158)
+.+++..|-+-|++..++..+.+++++++..
T Consensus 11 A~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~ 41 (187)
T 3v6i_A 11 VEAEIQALLQEAEAKAEAVKREAEEKAKALL 41 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655543
No 4
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.81 E-value=1e+02 Score=21.66 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031500 38 PVEKEMATEKKEERRMQAELEKQEAR 63 (158)
Q Consensus 38 ~~eKe~A~erk~ak~aqAe~~kh~ak 63 (158)
..|-+++.-.++-+..+.++|+-+.+
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544433
No 5
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=36.36 E-value=23 Score=20.55 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 031500 38 PVEKEMATEKKEERRMQA 55 (158)
Q Consensus 38 ~~eKe~A~erk~ak~aqA 55 (158)
..||+-++|+++.+.++.
T Consensus 2 saqKekeEe~kr~k~~r~ 19 (26)
T 1jzp_A 2 SAQKAKAEERKRRKMSRG 19 (26)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 468888888888886654
No 6
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.72 E-value=1e+02 Score=20.68 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=45.1
Q ss_pred ChhHHHHHHhHH---HhHhhhhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHh
Q 031500 1 MQSMKESAANVA---ASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQA 72 (158)
Q Consensus 1 Mqs~KEkaan~a---ASAKag~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~aka~nAA~k~~ 72 (158)
|.++|.|+..+= -.|...++.+...+.+.-.+. ...|-++.--.++-+..+-++++-+.+..-+-.++.
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~---~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERS---KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888776553 344444455555444433332 456777888888888888888888877776666654
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.85 E-value=1.2e+02 Score=21.14 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031500 39 VEKEMATEKKEERRMQAELEKQE 61 (158)
Q Consensus 39 ~eKe~A~erk~ak~aqAe~~kh~ 61 (158)
.|-++..-.++-+..+-++++-+
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554433
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.16 E-value=1.8e+02 Score=22.66 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=48.1
Q ss_pred HHHHHhHHHhHhhhhhhhh----HhHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Q 031500 5 KESAANVAASAKAGMEKTK----ATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQ 71 (158)
Q Consensus 5 KEkaan~aASAKag~ektK----A~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~aka~nAA~k~ 71 (158)
++++.++-...+..+...+ ++-+|=-.-+.+-+|.+..|...-++.-..++++.....+-.+.-+|+
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566555555554443 333343445567888999999988998999999999999888888887
No 9
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=21.07 E-value=1.7e+02 Score=21.62 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Q 031500 41 KEMATEKKEERRMQAELEKQEAREHNSAAKQ 71 (158)
Q Consensus 41 Ke~A~erk~ak~aqAe~~kh~aka~nAA~k~ 71 (158)
+..|+.++++++.+||.+...++....+.+.
T Consensus 125 ~~~Aere~~A~i~~Aege~~a~~~~a~a~~~ 155 (188)
T 3bk6_A 125 QAEAERERRARITLAEAERQAAEKLREAAEI 155 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556677788888888888877766655443
No 10
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=17.27 E-value=3.2e+02 Score=20.26 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=23.6
Q ss_pred hHHHHHHhHHHhHhhhhhhhhHhHhhhhhhh
Q 031500 3 SMKESAANVAASAKAGMEKTKATAQEKVDKM 33 (158)
Q Consensus 3 s~KEkaan~aASAKag~ektKA~aqEKaEKa 33 (158)
.+++.+..+-+.|++..++-+....+++++-
T Consensus 21 eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e 51 (187)
T 3v6i_A 21 EAEAKAEAVKREAEEKAKALLQARERALEAQ 51 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888877777654
Done!