BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031501
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
GN=At3g50808 PE=4 SV=1
Length = 110
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 35/139 (25%)
Query: 18 IQKVLDISGVQTYVINSARVVFLNER---PQPRPGKGVTNTCEVCDRSL--LDSFRFCSL 72
+ + +DISG+ Y IN +V++N+R R V + C++C+ + S FCS+
Sbjct: 1 MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60
Query: 73 GCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKMQSFSPSTPPPT 132
CK R +GS ++ N++++ S P
Sbjct: 61 ECKF------------RSVLGSQLDELME---------------NSSEVTEISEEIDEPV 93
Query: 133 AVSHRISKRRKGIPHRAPM 151
+ RRKG PHRAP
Sbjct: 94 M---KKRHRRKGSPHRAPF 109
>sp|P78364|PHC1_HUMAN Polyhomeotic-like protein 1 OS=Homo sapiens GN=PHC1 PE=1 SV=3
Length = 1004
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 56 CEVCDR-----SLLDSFRFCSLGC-KIVGTSKNFQKRKNRLAMGSDSEDSYS-------- 101
CE C + S RFCS+ C K S + Q R R M E +Y+
Sbjct: 800 CEYCGKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFRLKRKKMKEFQEANYARVRRRGPR 859
Query: 102 --------SSIHGKL----KNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRA 149
+ I GK ++ S+N++ ++ SP++P P +V +R G P+ A
Sbjct: 860 RSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALSPTSPGPLSVRAGHGERDLGNPNTA 919
Query: 150 P 150
P
Sbjct: 920 P 920
>sp|P27357|TLP_WHEAT Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1
Length = 173
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 GSDSEDSYS-SSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSH 136
G ++D Y S I G DFS + + +Q PS PPP A H
Sbjct: 108 GGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSCPPPQAYQH 152
>sp|P32937|PR1A_HORVU Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1
Length = 173
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 GSDSEDSYS-SSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSH 136
G ++D Y S I G DFS + + +Q PS PPP A H
Sbjct: 108 GGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSCPPPQAYQH 152
>sp|P32938|PR1C_HORVU Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1
Length = 173
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 GSDSEDSYS-SSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSH 136
G ++D Y S I G DFS + + +Q PS PPP A H
Sbjct: 108 GGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSCPPPQAYQH 152
>sp|Q03525|TMA23_YEAST Protein TMA23 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TMA23 PE=1 SV=2
Length = 211
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 65 DSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKMQSF 124
++FR L I+ K +K G+D E + G LKN D S+++NN F
Sbjct: 16 EAFREGGLKRPILVKHKRDKKGLGNAPGGNDGEAWWERLFDGHLKNLDVSTDSNNGSIKF 75
Query: 125 SPSTPPPTAVS 135
+ + TAVS
Sbjct: 76 TQNEAVATAVS 86
>sp|P11215|ITAM_HUMAN Integrin alpha-M OS=Homo sapiens GN=ITGAM PE=1 SV=2
Length = 1152
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 58 VCDRSLLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSI 104
+C L +F F SL C +VG + F + + +D EDSY + +
Sbjct: 775 ICQDDLSITFSFMSLDCLVVGGPREFNV---TVTVRNDGEDSYRTQV 818
>sp|Q6CVA2|STE20_KLULA Serine/threonine-protein kinase STE20 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=STE20 PE=3 SV=1
Length = 989
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 100 YSSSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGL 154
YSS++ G L DFS NN + F P+ P P RR IP +P+ L
Sbjct: 523 YSSNLQGPLLTNDFSETVNN--EKFIPTRPAPKPQGSSTVSRRVEIP--SPINSL 573
>sp|Q50DM8|GPR56_MACMU G-protein coupled receptor 56 OS=Macaca mulatta GN=GPR56 PE=2 SV=1
Length = 687
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 19 QKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCE--VCDRSLLDSFRFCSLGCKI 76
+KVL I T V N V L + QP+P K VT C V D +L + R+ S GC+
Sbjct: 310 EKVLGIVVQNTKVANLTEPVVLTFQHQPQP-KNVTLQCVFWVEDPTLSNPGRWSSAGCET 368
Query: 77 V 77
V
Sbjct: 369 V 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,885,879
Number of Sequences: 539616
Number of extensions: 2403386
Number of successful extensions: 9277
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 9171
Number of HSP's gapped (non-prelim): 113
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)