BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031502
         (158 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P82929|RT34_BOVIN 28S ribosomal protein S34, mitochondrial OS=Bos taurus GN=MRPS34
           PE=1 SV=2
          Length = 218

 Score = 37.0 bits (84), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 54  RKKKNLFEVAQFLPNWGVGYHMAKTHW-----ANVSYEITKIN---LYKDGKHGKAWGIV 105
           R++  L ++   LP +G+G  + +  W         + +T++      ++  HGKAWGI+
Sbjct: 59  RRESRLLQLLGRLPFFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGIL 118

Query: 106 HKDGLPATDAPRKISGVHKRCWRYIP--------SLSKSVESTPK 142
              G   ++A R+I  V    WR +P        S + + E TP+
Sbjct: 119 TFKGKTESEA-REIEQVMHHDWRLVPKHEEAAFTSFTPAPEETPR 162


>sp|O44712|AHR_CAEEL Aryl hydrocarbon receptor protein 1 OS=Caenorhabditis elegans
           GN=ahr-1 PE=1 SV=1
          Length = 602

 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 19/75 (25%)

Query: 30  STTTSASPSTPTPAPASSSAKPKRRKKKN---------------LFEVAQFLPNWGVGYH 74
           ST+ S  PS P P P ++ A   RR+K+N                F++  F P+W  G H
Sbjct: 440 STSNSLFPSVPVPTPTTTKAN--RRRKENSHEIVPTIPSIPIPTHFDMQMFDPSWNHGVH 497

Query: 75  MAKTHWANVSYEITK 89
                W +  Y +T+
Sbjct: 498 PPA--WPHDVYHLTQ 510


>sp|A4YIL1|SYFA_METS5 Phenylalanine--tRNA ligase alpha subunit OS=Metallosphaera sedula
           (strain ATCC 51363 / DSM 5348) GN=pheS PE=3 SV=1
          Length = 465

 Score = 30.4 bits (67), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 104 IVHKDGLPATDAPRKISGVHKRCWRY 129
           I  K  LP +D  RK+  VH++ WRY
Sbjct: 269 IEGKGNLPGSDLVRKVKEVHEKWWRY 294


>sp|Q9JIK9|RT34_MOUSE 28S ribosomal protein S34, mitochondrial OS=Mus musculus GN=Mrps34
           PE=2 SV=1
          Length = 218

 Score = 30.0 bits (66), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 98  HGKAWGIVHKDGLPATDAPRKISGVHKRCWRYIP 131
           HG+AWGI+   G  + D  R+I  V    WR +P
Sbjct: 111 HGRAWGILTFKG-KSEDTAREIEQVMYHDWRLVP 143


>sp|P82930|RT34_HUMAN 28S ribosomal protein S34, mitochondrial OS=Homo sapiens GN=MRPS34
           PE=1 SV=2
          Length = 218

 Score = 29.6 bits (65), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 98  HGKAWGIVHKDGLPATDAPRKISGVHKRCWRYIP 131
           HGKAWGI+   G   ++A R+I  V    WR +P
Sbjct: 111 HGKAWGILTFKGKTESEA-REIEHVMYHDWRLVP 143


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.125    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,458,098
Number of Sequences: 539616
Number of extensions: 2354240
Number of successful extensions: 9488
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9460
Number of HSP's gapped (non-prelim): 28
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)