Query 031502
Match_columns 158
No_of_seqs 77 out of 79
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 15:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5628 Predicted acetyltransf 37.2 4 8.6E-05 33.0 -2.5 34 58-91 69-104 (143)
2 COG2353 Uncharacterized conser 31.3 63 0.0014 26.5 3.5 54 73-127 87-147 (192)
3 TIGR00082 rbfA ribosome-bindin 28.8 60 0.0013 24.4 2.8 19 85-103 33-51 (114)
4 PRK13816 ribosome-binding fact 26.4 67 0.0015 24.9 2.7 17 86-102 34-50 (131)
5 PF06014 DUF910: Bacterial pro 25.4 27 0.00059 24.6 0.3 16 57-72 2-17 (62)
6 PRK13818 ribosome-binding fact 24.8 78 0.0017 24.2 2.8 17 86-102 33-49 (121)
7 PRK13817 ribosome-binding fact 24.5 80 0.0017 24.1 2.8 18 85-102 32-49 (119)
8 PRK13815 ribosome-binding fact 21.5 96 0.0021 23.8 2.7 21 85-105 32-52 (122)
9 PRK00521 rbfA ribosome-binding 20.0 1.1E+02 0.0025 22.9 2.8 18 85-102 35-52 (120)
10 PF10559 Plug_translocon: Plug 19.5 67 0.0015 19.9 1.2 13 59-71 2-14 (35)
No 1
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=37.20 E-value=4 Score=32.96 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=27.6
Q ss_pred cHHHHHhhCCCCCccceEEEcccCCc--eEEEEEeE
Q 031502 58 NLFEVAQFLPNWGVGYHMAKTHWANV--SYEITKIN 91 (158)
Q Consensus 58 NLfqlLs~LP~~GVG~kVtRk~W~~~--yW~ITrVk 91 (158)
|=|-++.+..+.|||++++|+.|... -|.|--|.
T Consensus 69 ~efFIi~k~~~~GvGR~aaK~If~~~~g~w~Va~i~ 104 (143)
T COG5628 69 AEFFIVRKHRRRGVGRAAAKAIFGSAWGVWQVATVR 104 (143)
T ss_pred hheEeeehhhccchhHHHHHHHHHHhhceEEEEEec
Confidence 44667888999999999999999985 48776654
No 2
>COG2353 Uncharacterized conserved protein [Function unknown]
Probab=31.35 E-value=63 Score=26.50 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=35.9
Q ss_pred ceEEEcccCCc------eEEEEEeEecCCCCceeeEEEEeecCccCCCC-CcccCCCcccce
Q 031502 73 YHMAKTHWANV------SYEITKINLYKDGKHGKAWGIVHKDGLPATDA-PRKISGVHKRCW 127 (158)
Q Consensus 73 ~kVtRk~W~~~------yW~ITrVkl~~dg~HGKAWGiltwkGk~~te~-~~rI~ga~Kr~W 127 (158)
..+.-.-|.+. .++-|+|+. .+...++.-|.||.+|++.... +.++.+..+.-|
T Consensus 87 ~~Lrs~dffda~kyP~itF~st~v~~-~g~~~~~v~G~LTi~GvTkpvtl~~~~~~~~~~p~ 147 (192)
T COG2353 87 AHLRSADFFDAAKYPTITFTSTKVEK-TGDDTGKVTGNLTIRGVTKPVTLDVELIGCGRDPM 147 (192)
T ss_pred hhhccchhccHhhCCeEEEEEEEEEE-CCCCccEEEeEEEEeeeccceEEEEEEeeccCCCc
Confidence 34445555442 388999995 4678889999999999954433 445545555544
No 3
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=28.78 E-value=60 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.9
Q ss_pred EEEEEeEecCCCCceeeEE
Q 031502 85 YEITKINLYKDGKHGKAWG 103 (158)
Q Consensus 85 W~ITrVkl~~dg~HGKAWG 103 (158)
=+||+|++.+|+.|-+.|=
T Consensus 33 vtVt~V~lS~Dl~~AkVyv 51 (114)
T TIGR00082 33 LTVTKVEVSKDLQHAKVFV 51 (114)
T ss_pred EEEeEEEECCCCCEEEEEE
Confidence 3899999999999999963
No 4
>PRK13816 ribosome-binding factor A; Provisional
Probab=26.37 E-value=67 Score=24.91 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031502 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 34 tVT~V~vS~DL~~AkVy 50 (131)
T PRK13816 34 TISSVKVSPDLGYADVY 50 (131)
T ss_pred EEeEEEECCCCCeEEEE
Confidence 79999999999999996
No 5
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=25.44 E-value=27 Score=24.61 Aligned_cols=16 Identities=38% Similarity=0.758 Sum_probs=12.4
Q ss_pred CcHHHHHhhCCCCCcc
Q 031502 57 KNLFEVAQFLPNWGVG 72 (158)
Q Consensus 57 KNLfqlLs~LP~~GVG 72 (158)
||||||.+.|-.||+=
T Consensus 2 ktlyDVqQLLK~fG~~ 17 (62)
T PF06014_consen 2 KTLYDVQQLLKKFGII 17 (62)
T ss_dssp -SHHHHHHHHHTTS--
T ss_pred CcHHHHHHHHHHCCEE
Confidence 7899999999999973
No 6
>PRK13818 ribosome-binding factor A; Provisional
Probab=24.82 E-value=78 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031502 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 33 tVt~V~lS~Dl~~AkVy 49 (121)
T PRK13818 33 TITAVECTNDLSYATVY 49 (121)
T ss_pred EEeEEEECCCCCEEEEE
Confidence 89999999999999995
No 7
>PRK13817 ribosome-binding factor A; Provisional
Probab=24.47 E-value=80 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=16.5
Q ss_pred EEEEEeEecCCCCceeeE
Q 031502 85 YEITKINLYKDGKHGKAW 102 (158)
Q Consensus 85 W~ITrVkl~~dg~HGKAW 102 (158)
=+||+|++.+|+.|-+.|
T Consensus 32 vtVt~V~vS~Dl~~AkVy 49 (119)
T PRK13817 32 ISLTAVSISPDLKQAKVF 49 (119)
T ss_pred eEEeEEEECCCCCEEEEE
Confidence 379999999999999996
No 8
>PRK13815 ribosome-binding factor A; Provisional
Probab=21.47 E-value=96 Score=23.77 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.9
Q ss_pred EEEEEeEecCCCCceeeEEEE
Q 031502 85 YEITKINLYKDGKHGKAWGIV 105 (158)
Q Consensus 85 W~ITrVkl~~dg~HGKAWGil 105 (158)
=+||+|++.+|+.|-+.|=-+
T Consensus 32 vtVt~V~vS~Dl~~AkVyvs~ 52 (122)
T PRK13815 32 VTITGVKVTDDLHLATIYFTV 52 (122)
T ss_pred eEEeEEEECCCCCEEEEEEEE
Confidence 389999999999999998433
No 9
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=19.97 E-value=1.1e+02 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.4
Q ss_pred EEEEEeEecCCCCceeeE
Q 031502 85 YEITKINLYKDGKHGKAW 102 (158)
Q Consensus 85 W~ITrVkl~~dg~HGKAW 102 (158)
=+||+|++.+|+.|-+.|
T Consensus 35 vtIt~V~vS~Dl~~AkVy 52 (120)
T PRK00521 35 VTVTDVEVSPDLAHAKVY 52 (120)
T ss_pred eEEEEEEECCCCCEEEEE
Confidence 389999999999999986
No 10
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=19.46 E-value=67 Score=19.86 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=10.9
Q ss_pred HHHHHhhCCCCCc
Q 031502 59 LFEVAQFLPNWGV 71 (158)
Q Consensus 59 LfqlLs~LP~~GV 71 (158)
||-+|++.|-+|+
T Consensus 2 lYl~ls~ipLyG~ 14 (35)
T PF10559_consen 2 LYLFLSQIPLYGL 14 (35)
T ss_dssp HHHHHHHSB-STS
T ss_pred EEEEeeCCccccc
Confidence 6788999999999
Done!