Query 031502
Match_columns 158
No_of_seqs 77 out of 79
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 00:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8d_A Medulloblastoma antigen 30.5 46 0.0016 22.5 3.2 39 66-111 4-45 (67)
2 2dyj_A Ribosome-binding factor 27.1 45 0.0016 23.2 2.8 18 86-103 32-49 (95)
3 2nn4_A Hypothetical protein YQ 25.1 19 0.00065 25.1 0.5 17 56-72 2-18 (72)
4 2eqj_A Metal-response element- 23.9 78 0.0027 21.6 3.4 24 68-92 13-39 (66)
5 2kzf_A RBFA, ribosome-binding 22.9 48 0.0016 23.5 2.3 18 86-103 37-54 (106)
6 1jos_A RBFA, ribosome-binding 22.1 63 0.0022 23.6 2.9 21 85-105 35-55 (128)
7 2e7g_A Putative ribosome-bindi 20.8 58 0.002 23.8 2.4 19 86-104 45-63 (129)
8 2e5p_A Protein PHF1, PHD finge 19.4 1.1E+02 0.0039 21.0 3.5 26 66-92 7-35 (68)
9 1iz6_A Initiation factor 5A; S 11.7 2E+02 0.0067 21.3 3.4 31 80-110 20-50 (138)
10 3v1y_O PP38, glyceraldehyde-3- 10.5 68 0.0023 27.6 0.5 44 68-112 10-76 (337)
No 1
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=30.50 E-value=46 Score=22.54 Aligned_cols=39 Identities=23% Similarity=0.575 Sum_probs=27.6
Q ss_pred CCCCCccceEEEcccCCc-eE--EEEEeEecCCCCceeeEEEEeecCcc
Q 031502 66 LPNWGVGYHMAKTHWANV-SY--EITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 66 LP~~GVG~kVtRk~W~~~-yW--~ITrVkl~~dg~HGKAWGiltwkGk~ 111 (158)
+|.|=||-+|--+ |.++ || +|+.|. .+ |. +-+.+.+|..
T Consensus 4 ~~~~~vGd~vmAr-W~D~~yYpA~I~si~--~~---~~-Y~V~F~dG~~ 45 (67)
T 3p8d_A 4 SSEFQINEQVLAC-WSDCRFYPAKVTAVN--KD---GT-YTVKFYDGVV 45 (67)
T ss_dssp -CCCCTTCEEEEE-CTTSCEEEEEEEEEC--TT---SE-EEEEETTSCE
T ss_pred CcccccCCEEEEE-cCCCCEeeEEEEEEC--CC---Ce-EEEEEeCCce
Confidence 5789999988775 8777 46 688776 33 33 7777777763
No 2
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=27.14 E-value=45 Score=23.23 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=16.4
Q ss_pred EEEEeEecCCCCceeeEE
Q 031502 86 EITKINLYKDGKHGKAWG 103 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAWG 103 (158)
+||+|++.+|+.|-+.|=
T Consensus 32 tVt~V~vs~Dl~~AkVyv 49 (95)
T 2dyj_A 32 TVEAVRLSKDGSVLSVYV 49 (95)
T ss_dssp EEEEEEECTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 899999999999999874
No 3
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=25.06 E-value=19 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.9
Q ss_pred CCcHHHHHhhCCCCCcc
Q 031502 56 KKNLFEVAQFLPNWGVG 72 (158)
Q Consensus 56 ~KNLfqlLs~LP~~GVG 72 (158)
-+|||||.+.|-.||+=
T Consensus 2 MktlYDVqQLLK~fG~~ 18 (72)
T 2nn4_A 2 LNTFYDVQQLLKTFGHI 18 (72)
T ss_dssp CCSHHHHHHHHHTTTCC
T ss_pred cccHHHHHHHHHHCCEE
Confidence 47999999999999973
No 4
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=23.93 E-value=78 Score=21.63 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=19.4
Q ss_pred CCCccceEEEcccCCc-eE--EEEEeEe
Q 031502 68 NWGVGYHMAKTHWANV-SY--EITKINL 92 (158)
Q Consensus 68 ~~GVG~kVtRk~W~~~-yW--~ITrVkl 92 (158)
.|-+|.-| +.+|.++ || +|.+|+-
T Consensus 13 ~f~vGddV-LA~wtDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 13 KFEEGQDV-LARWSDGLFYLGTIKKINI 39 (66)
T ss_dssp CSCTTCEE-EEECTTSCEEEEEEEEEET
T ss_pred cccCCCEE-EEEEccCcEEEeEEEEEcc
Confidence 67889887 6789997 56 7999984
No 5
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=22.89 E-value=48 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=16.2
Q ss_pred EEEEeEecCCCCceeeEE
Q 031502 86 EITKINLYKDGKHGKAWG 103 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAWG 103 (158)
+||+|++.+|+.|-+.|=
T Consensus 37 tVt~V~vs~Dl~~AkVyv 54 (106)
T 2kzf_A 37 TFSRVELSKDKRYADVYV 54 (106)
T ss_dssp CEEEEEECTTSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 799999999999998873
No 6
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=22.07 E-value=63 Score=23.63 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=17.7
Q ss_pred EEEEEeEecCCCCceeeEEEE
Q 031502 85 YEITKINLYKDGKHGKAWGIV 105 (158)
Q Consensus 85 W~ITrVkl~~dg~HGKAWGil 105 (158)
=+||+|++.+|+.|-+.|=-+
T Consensus 35 vtVt~V~vS~Dl~~AkVyvs~ 55 (128)
T 1jos_A 35 VTVSDVEVSSDLSYAKIFVTF 55 (128)
T ss_dssp EEEEEEEECTTSCEEEEEEEE
T ss_pred eEEeEEEECCCCCEEEEEEEe
Confidence 389999999999999987443
No 7
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.81 E-value=58 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.8
Q ss_pred EEEEeEecCCCCceeeEEE
Q 031502 86 EITKINLYKDGKHGKAWGI 104 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAWGi 104 (158)
+||+|++.+|+.|-+.|=-
T Consensus 45 tVt~V~vS~Dl~~AkVyvs 63 (129)
T 2e7g_A 45 ELSKVSLTPDFSACRAYWK 63 (129)
T ss_dssp CEEEEEECTTSCCEEEEEC
T ss_pred EEEEEEECCCCcEEEEEEE
Confidence 7999999999999998743
No 8
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.36 E-value=1.1e+02 Score=21.04 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCCCCccceEEEcccCCc-eE--EEEEeEe
Q 031502 66 LPNWGVGYHMAKTHWANV-SY--EITKINL 92 (158)
Q Consensus 66 LP~~GVG~kVtRk~W~~~-yW--~ITrVkl 92 (158)
.|.+.+|.-|-- +|.++ || +|.+|+-
T Consensus 7 ~~~f~eGqdVLa-rWsDGlfYlGtV~kV~~ 35 (68)
T 2e5p_A 7 GPRLWEGQDVLA-RWTDGLLYLGTIKKVDS 35 (68)
T ss_dssp CCCCCTTCEEEE-ECTTSSEEEEEEEEEET
T ss_pred CcccccCCEEEE-EecCCcEEEeEEEEEec
Confidence 478899999854 79997 56 8999984
No 9
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=11.73 E-value=2e+02 Score=21.30 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=24.9
Q ss_pred cCCceEEEEEeEecCCCCceeeEEEEeecCc
Q 031502 80 WANVSYEITKINLYKDGKHGKAWGIVHKDGL 110 (158)
Q Consensus 80 W~~~yW~ITrVkl~~dg~HGKAWGiltwkGk 110 (158)
+....|.|.++...+-|+||.|+-.+-.++.
T Consensus 20 ~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl 50 (138)
T 1iz6_A 20 IDDEPCRIVNITVSSPGKHGSAKARIEAVGI 50 (138)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCEEEEEEEET
T ss_pred ECCEEEEEEEEEeecCCCCCceEEEEEEEEC
Confidence 3445799999999888999999977666655
No 10
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=10.49 E-value=68 Score=27.61 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCC-ccceEEEcccCCceEEEEEeEec-------------CCCCceeeEE---------EEeecCccC
Q 031502 68 NWG-VGYHMAKTHWANVSYEITKINLY-------------KDGKHGKAWG---------IVHKDGLPA 112 (158)
Q Consensus 68 ~~G-VG~kVtRk~W~~~yW~ITrVkl~-------------~dg~HGKAWG---------iltwkGk~~ 112 (158)
+|| ||+.|.|-.+...--+|.-|+ + -|--||+-=| .|.++|+++
T Consensus 10 GfGrIGr~v~R~~~~~~~~~ivaiN-d~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I 76 (337)
T 3v1y_O 10 GFGRIGRLVARVALQSEDVELVAVN-DPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPV 76 (337)
T ss_dssp CCSHHHHHHHHHHHTCSSEEEEEEE-CTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEE
T ss_pred CCChHHHHHHHHHHhCCCcEEEEEe-CCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEE
Confidence 455 788999987766557787777 3 2346887666 688888854
Done!