Query 031502
Match_columns 158
No_of_seqs 77 out of 79
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 00:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031502.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031502hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dyja1 d.52.7.1 (A:4-94) Ribo 38.5 11 0.00078 24.5 2.8 17 86-102 29-45 (91)
2 d1josa_ d.52.7.1 (A:) Ribosome 27.0 22 0.0016 23.0 2.9 18 86-103 30-47 (100)
3 d2eifa1 b.34.5.2 (A:1-73) Euka 26.6 35 0.0025 21.4 3.8 28 83-110 26-53 (73)
4 d1iz6a1 b.34.5.2 (A:2-70) Euka 22.2 49 0.0036 20.3 3.8 30 81-110 20-49 (69)
5 d1bkba1 b.34.5.2 (A:4-74) Euka 21.9 45 0.0033 20.7 3.6 28 83-110 25-52 (71)
6 d2e7ga1 d.52.7.1 (A:86-201) Ri 19.7 30 0.0022 23.0 2.4 17 86-102 38-54 (116)
7 d1y0ga_ b.61.6.1 (A:) Lipid bi 18.3 51 0.0037 22.7 3.6 27 83-111 83-109 (169)
8 d2nn4a1 a.272.1.1 (A:1-62) Hyp 16.8 17 0.0012 23.1 0.5 16 57-72 2-17 (62)
9 d1pa4a_ d.52.7.1 (A:) Ribosome 16.7 12 0.00089 24.6 -0.3 17 86-102 29-45 (96)
10 d2cqia1 d.58.7.1 (A:1-90) Nucl 14.3 73 0.0053 19.2 3.2 26 86-111 34-59 (90)
No 1
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=38.51 E-value=11 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=16.0
Q ss_pred EEEEeEecCCCCceeeE
Q 031502 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAW 102 (158)
+||+|++.+|+.|.+.|
T Consensus 29 tIt~V~~S~Dl~~akVy 45 (91)
T d2dyja1 29 TVEAVRLSKDGSVLSVY 45 (91)
T ss_dssp EEEEEEECTTSSEEEEE
T ss_pred EEEEEEECCCcccEEEE
Confidence 79999999999999888
No 2
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=27.03 E-value=22 Score=23.04 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=16.2
Q ss_pred EEEEeEecCCCCceeeEE
Q 031502 86 EITKINLYKDGKHGKAWG 103 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAWG 103 (158)
+||+|++.+|+.|-+.|=
T Consensus 30 tIt~V~~S~Dl~~A~Vy~ 47 (100)
T d1josa_ 30 TVSDVEVSSDLSYAKIFV 47 (100)
T ss_dssp EEEEEEECTTSCEEEEEE
T ss_pred EEEEEEEcCCcceEEEEE
Confidence 799999999999998873
No 3
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.62 E-value=35 Score=21.35 Aligned_cols=28 Identities=43% Similarity=0.512 Sum_probs=23.5
Q ss_pred ceEEEEEeEecCCCCceeeEEEEeecCc
Q 031502 83 VSYEITKINLYKDGKHGKAWGIVHKDGL 110 (158)
Q Consensus 83 ~yW~ITrVkl~~dg~HGKAWGiltwkGk 110 (158)
.=|.|.++...+-|+||.|.=.+..++.
T Consensus 26 ~p~~V~e~~~~kpGk~G~A~~r~k~kni 53 (73)
T d2eifa1 26 VPCEIVDISVSKPGKHGGAKARVVGIGI 53 (73)
T ss_dssp EEEEEEEEEECCCCSSSCCEEEEEEEES
T ss_pred EEEEEEEEEEECCCCcccEEEEEEEEEE
Confidence 3499999999998999999877777666
No 4
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.17 E-value=49 Score=20.28 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=25.2
Q ss_pred CCceEEEEEeEecCCCCceeeEEEEeecCc
Q 031502 81 ANVSYEITKINLYKDGKHGKAWGIVHKDGL 110 (158)
Q Consensus 81 ~~~yW~ITrVkl~~dg~HGKAWGiltwkGk 110 (158)
...-|.|.++...+-|+||.|.=.+..++.
T Consensus 20 ~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i 49 (69)
T d1iz6a1 20 DDEPCRIVNITVSSPGKHGSAKARIEAVGI 49 (69)
T ss_dssp TTEEEEEEEEEECCCCTTSCCEEEEEEEET
T ss_pred CCEEEEEEEEEEEcCCCcCccEEEEEEEEc
Confidence 344599999999888999999988888877
No 5
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=21.94 E-value=45 Score=20.66 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.1
Q ss_pred ceEEEEEeEecCCCCceeeEEEEeecCc
Q 031502 83 VSYEITKINLYKDGKHGKAWGIVHKDGL 110 (158)
Q Consensus 83 ~yW~ITrVkl~~dg~HGKAWGiltwkGk 110 (158)
.-|.|.++...+-|+||.|.=.+..++.
T Consensus 25 ~p~~V~~~~~~kpgk~G~a~~r~k~k~i 52 (71)
T d1bkba1 25 EPCRVVEIEKSKTGKHGSAKARIVAVGV 52 (71)
T ss_dssp EEEEEEEEEEECCSTTSCCEEEEEEEET
T ss_pred EEEEEEEEEEECCCCCCccEEEEEEEEe
Confidence 3499999999888999999988888777
No 6
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.75 E-value=30 Score=22.99 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.7
Q ss_pred EEEEeEecCCCCceeeE
Q 031502 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 38 tIt~V~vS~Dl~~AkVy 54 (116)
T d2e7ga1 38 ELSKVSLTPDFSACRAY 54 (116)
T ss_dssp CEEEEEECTTSCCEEEE
T ss_pred EEEEEEEcCCCcEEEEE
Confidence 79999999999999876
No 7
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli [TaxId: 562]}
Probab=18.33 E-value=51 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.3
Q ss_pred ceEEEEEeEecCCCCceeeEEEEeecCcc
Q 031502 83 VSYEITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 83 ~yW~ITrVkl~~dg~HGKAWGiltwkGk~ 111 (158)
..++.++|.. +++...+-|.||.+|++
T Consensus 83 i~F~s~~v~~--~~~~~~v~G~Lti~Gvt 109 (169)
T d1y0ga_ 83 ATFTSTSVKK--DGDELDITGDLTLNGVT 109 (169)
T ss_dssp EEEEEEEEEE--ETTEEEEEEEEEETTEE
T ss_pred EEEEEEEEEe--cCCeEEEEEEEEEEeEE
Confidence 3589999986 45678999999999994
No 8
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=16.82 E-value=17 Score=23.09 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=14.0
Q ss_pred CcHHHHHhhCCCCCcc
Q 031502 57 KNLFEVAQFLPNWGVG 72 (158)
Q Consensus 57 KNLfqlLs~LP~~GVG 72 (158)
|+||||.+-|-.||+=
T Consensus 2 ktlYDVqQLLK~fG~~ 17 (62)
T d2nn4a1 2 NTFYDVQQLLKTFGHI 17 (62)
T ss_dssp CSHHHHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHCCEe
Confidence 7899999999999973
No 9
>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=16.66 E-value=12 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.7
Q ss_pred EEEEeEecCCCCceeeE
Q 031502 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAW 102 (158)
+||+|++.+|+.|.+.|
T Consensus 29 tIt~V~vS~Dl~~AkVy 45 (96)
T d1pa4a_ 29 HVTHVKLSDDLLHVTVY 45 (96)
T ss_dssp CCSCCEEETTTTEEEEC
T ss_pred EEEEEEECCCCcEEEEE
Confidence 79999999999999986
No 10
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.34 E-value=73 Score=19.22 Aligned_cols=26 Identities=4% Similarity=0.004 Sum_probs=19.6
Q ss_pred EEEEeEecCCCCceeeEEEEeecCcc
Q 031502 86 EITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 86 ~ITrVkl~~dg~HGKAWGiltwkGk~ 111 (158)
.|.+|++..|...++-+|.++|.-..
T Consensus 34 ~i~~v~i~~d~~~~~~~afV~f~~~~ 59 (90)
T d2cqia1 34 PCKSCKMITEHTSNDPYCFVEFYEHR 59 (90)
T ss_dssp CEEEEEEECCCCSSCCEEEEEESSHH
T ss_pred CceeeeeecccCccceeeEEEECCHH
Confidence 56778876666667889999998763
Done!