BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031503
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
Length = 134
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Query: 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI 84
L+ G R ++ F + +V ++ +S D NPLH + A F+ +VHGML+AS+F +
Sbjct: 6 LEVGQKARLSKRFGAAEVAAFAALSEDFNPLHLDPAFAATTAFERPIVHGMLLASLFSGL 65
Query: 85 ISSHFP--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142
+ P G++Y+ QSL F+LPV++GDEV +++ +RE K + +T+ G L
Sbjct: 66 LGQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKP--IATLTTRIFTQGGAL 123
Query: 143 VLDGEAMAFLP 153
+ GEA+ LP
Sbjct: 124 AVTGEAVVKLP 134
>pdb|3IR3|A Chain A, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
pdb|3IR3|B Chain B, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
Length = 148
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 14 LRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVH 73
L++F + +K GD R F+ DV +S+++ D NPLH N + A++ F + +VH
Sbjct: 8 LQHFQHMH---IKVGDRAELRRAFTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVH 64
Query: 74 GMLVASMFPQIISSHF--PGAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKF 131
G+L+ + ++ + PG V++SQ + F P+YIG+ VL + V+++ KR++
Sbjct: 65 GVLINGLISALLGTKMPGPGCVFLSQEISFPAPLYIGEVVLA---SAEVKKL-KRFIAII 120
Query: 132 STKC-IKNGELLVLDGEAMAFLP 153
+ C + + V++G +P
Sbjct: 121 AVSCSVIESKKTVMEGWVKVMVP 143
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Query: 3 INNLLSTKPPLLRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESA 62
+ + S K ++ F E LK G + DV + +S D NP+HF+ + A
Sbjct: 15 MKGIYSKKGGKVKPFEKFEGE-LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFA 73
Query: 63 RNAGFDDRLVHGMLVASMFPQIISSHFPGAVY-VSQSLHFRLPVYIGDEVLGQLQAVNVR 121
F R+VHGML S+ + + PG V + QS + PV IGD V +++ V
Sbjct: 74 SKTRFGGRVVHGMLTTSLVSAAV-ARLPGTVVLLEQSFRYTSPVRIGDVV--RVEGVVSG 130
Query: 122 EMKKRYLVKFSTKCIKNGELLVLDG 146
K RY + KC G+ +V +G
Sbjct: 131 VEKNRYTI--DVKCY-TGDKVVAEG 152
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 38 SSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG---AVY 94
+SED ++S D NPLH + + A AGF ++HG+ + + + F A++
Sbjct: 490 TSEDQAALYRLSGDKNPLHIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQFADNNPALF 549
Query: 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLV 143
+ + F PV G Q + V K+ + F T ++ G+ ++
Sbjct: 550 KAVKVRFSGPVIPG-------QTLRVDLWKQGTRINFRTVVVETGKEVI 591
>pdb|1Q6W|A Chain A, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|B Chain B, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|C Chain C, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|D Chain D, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|E Chain E, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|F Chain F, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|G Chain G, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|H Chain H, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|I Chain I, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|J Chain J, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|K Chain K, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|L Chain L, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
Length = 161
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 35 RIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM----FPQIISSHFP 90
R + D+ ++ ++ D PLH + E A+ F + G LV S+ Q+I S++
Sbjct: 29 RTVTETDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYD 88
Query: 91 GAVYVS----QSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN--GELLV 143
+ ++ + + F PV+IGD + + V ++ ++ V +KN GEL++
Sbjct: 89 VSSVIAFFGIKDVRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVL 147
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 47 KVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG---AVYVSQSLHFRL 103
++S D NPLH + A AGFD ++HG+ + + F + + + F
Sbjct: 148 RLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAK 207
Query: 104 PVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLV 143
PVY G Q + K+ + F TK + G++++
Sbjct: 208 PVYPG-------QTLQTEMWKEGNRIHFQTKVQETGDIVI 240
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 47 KVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG---AVYVSQSLHFRL 103
++S D NPLH + A AGFD ++HG+ + + F + + + F
Sbjct: 189 RLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAK 248
Query: 104 PVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLV 143
PVY G Q + K+ + F TK + G++++
Sbjct: 249 PVYPG-------QTLQTEMWKEGNRIHFQTKVQETGDIVI 281
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 41 DVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSH----FPGAVYVS 96
D+ ++ VS D NP+H + +A AG + +VHGM +++ ++++ P A +
Sbjct: 1235 DMRPFAVVSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVVTATDGKPVPPAKLIG 1294
Query: 97 QSLHFRLPVYIGDEV 111
+ F V GD+V
Sbjct: 1295 WTARFLGMVKPGDQV 1309
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 45 YSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPGAV------YVSQS 98
Y++VS D NP+H + A A + HGM ++ +I + +V Y Q
Sbjct: 1553 YARVSGDLNPIHVSRHFASYANLPGTITHGMFSSASVRALIENWAADSVSSRVRGYTCQF 1612
Query: 99 LHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEA 148
+ LP + + +N R+ L+KF T+ +++VL GEA
Sbjct: 1613 VDMVLPNTALKTSIQHVGMINGRK-----LIKFETR--NEDDVVVLTGEA 1655
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 47 KVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG---AVYVSQSLHFRL 103
++S D N LH + E A++ GF ++HG+ + + + F G A + S + F
Sbjct: 224 RLSGDYNSLHIDPEIAKSVGFKQPILHGLCSMGVASRALFKQFCGGDVARFKSIRVRFSS 283
Query: 104 PVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152
P + G+ + ++ ++ + +VK I +G V +A A L
Sbjct: 284 PCFPGETIQTRMWQEGSGKVLFQAVVKERGAVIVDGGEFVYTQDASARL 332
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI-------- 84
Q + SED+ ++S D NPLH + A+ A F ++HG + +
Sbjct: 164 QVDVPVSEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGXCTYGLSAKALIDKFGXF 223
Query: 85 --ISSHFPGAVYVSQSL 99
I + F G V+ ++L
Sbjct: 224 NEIKARFTGIVFPGETL 240
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI-------- 84
Q + SED+ ++S D NPL + A+ A F ++HGM + +
Sbjct: 164 QVDVPVSEDLAALYRLSGDRNPLQIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKFGMF 223
Query: 85 --ISSHFPGAVYVSQSL 99
I + F G V+ ++L
Sbjct: 224 NEIKARFTGIVFPGETL 240
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a
Length = 367
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 87 SHFPGAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYL--VKFSTKCIKNGELLVL 144
+HF Y S HF PVY E+ G L N ++++Y+ + T+CI NG +VL
Sbjct: 58 THFHSDHYAGLSKHFTFPVYC-SEITGNLLK-NKLHVQEQYIHPLPLDTECIVNGVKVVL 115
>pdb|4FFU|A Chain A, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|B Chain B, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|C Chain C, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|D Chain D, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|E Chain E, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|F Chain F, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|G Chain G, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|H Chain H, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|I Chain I, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|J Chain J, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|K Chain K, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|L Chain L, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
Length = 176
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 31 LRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF- 89
L R + D V ++ + D P H ++E A+ R+ HG + S+ + +S
Sbjct: 41 LTSGRTITETDFVVHAGHTGDFFPHHXDAEFAKTLPGGQRIAHGTXIFSIGVGLTASLIN 100
Query: 90 PGAV-YVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKR 126
P A Y L F PV+IGD + ++ + KR
Sbjct: 101 PVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKR 138
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 97 QSLHFRLPVYI--GDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLV 143
QS H L YI GD +L LQ VN+ +M K+ L + + + K +LLV
Sbjct: 347 QSGHIILLDYITTGDGMLSALQLVNIMKMTKKPLSELAGEMTKFPQLLV 395
>pdb|2BEI|A Chain A, X-Ray Structure Of Thialysine N-Acetyltransferase
(Ssat2) From Homo Sapiens
pdb|2BEI|B Chain B, X-Ray Structure Of Thialysine N-Acetyltransferase
(Ssat2) From Homo Sapiens
pdb|2Q4V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
pdb|2Q4V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
Length = 170
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 21 EPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
E + GDILR R ++ E+ K+S + + + E+ R GF D + LVA +
Sbjct: 8 EAKEGDCGDILRLIR-----ELAEFEKLS---DQVKISEEALRADGFGDNPFYHCLVAEI 59
Query: 81 FP 82
P
Sbjct: 60 LP 61
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 45 YSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRL 103
Y++VS D NP+H + + A + HGM ++ ++ + + +S H +
Sbjct: 1562 YARVSGDYNPIHVSRVFSSYANLPGTITHGMYTSAAVRSLVETWAAENNIGRVRSYHVNM 1621
Query: 104 P--VYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSLA 156
V D + +L+ V + + R ++K + K+ + VL GEA P A
Sbjct: 1622 VGMVLPNDAITVKLEHVGM--IAGRKIIKVDARN-KDTDESVLQGEAEVEQPVTA 1673
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|B Chain B, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|C Chain C, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|D Chain D, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
Length = 341
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 101 FRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142
FR+ V IGD +L + + ++RE + R + K ++N ELL
Sbjct: 284 FRVEVKIGDILLDEAEGNSIREAEHRA----AMKVLENDELL 321
>pdb|2C2I|A Chain A, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
pdb|2C2I|B Chain B, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
Length = 151
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 15 RYFSSLEPRILKTGDILRQTR--IFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLV 72
R F S+ G+ + Q+ + E+V ++ + D +H + E A F +
Sbjct: 2 RTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIA 61
Query: 73 HGMLVASMFPQIISSHFP------GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREM 123
HG ++ P++ + Y + F PV +G V V V ++
Sbjct: 62 HGFXTLALLPRLQHQXYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDL 118
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 PPLLRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHF 57
P LL YF + +LK D ++ F E V E+ K+ +NP F
Sbjct: 202 PALLDYFPGIHKTLLKNADYIKN---FIMEKVKEHQKLLDVNNPRDF 245
>pdb|3TS3|A Chain A, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
pdb|3TS3|B Chain B, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
pdb|3TS3|C Chain C, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
pdb|3TS3|D Chain D, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
Length = 208
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 85 ISSHFPGAVYVSQSLHFRLPVYIGDEVL------GQLQAVNVREMKKRYLVKFST 133
I ++PG + + L RL + GD V+ G+ A+ R ++Y++ FST
Sbjct: 117 IQKYYPGTTNLDEQLKQRLNLAEGDPVISMGDTNGRRAALFYRTSDEKYILFFST 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,298,937
Number of Sequences: 62578
Number of extensions: 152653
Number of successful extensions: 304
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 24
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)